>input_sequence_54648
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-----------------------------ATGGCGGCGTCGCAGGAGTACATGGACAAGGCGCTGCTCCGGCGGAGCTAC
CGCAACGTCTGGCATACCGACCTCACCAACGCCATCCAGGCGGATTTCCCATGTGCGTATCCTATTCTTCCAACTTATGA
AGC----AGTAGCTGTTTTGATTTCTTAAGATATGCCAGGACCTGA-CTTACTTTTTGTGTCTTTTTGTTCTTCCTTTTG
ATGCAGACTGCTGTCTGTCGCTGTGGTGGTGAGTGGGCACTGTTCCGATCCTCTGGA----------------TCCCAGC
TGATGAATTCTAACAAATGTGTATCTGTTTTGTGTTC--------TGATGTTATCCAGCGGCCCATGCGTCTCCTACATG
CTCCGCAGGCGTGCTCTCTACCACGACATGTCGAGGTGAGGCTTAAATTTGATTCTTCTAGTATTTCCTTTGATTT---G
TACTGGTGCAGTTCTCTGTTCTTCAGTCTCGCTAATCCATGCGTCTCTGTCGGCGTTCCAGATATGTGTGCTGCGCCGGG
TACATGCCATGCAGCGGCAGGTGCGGCGAGAGCAAATGCCCAGAACTATGCCTCGCAACAGAGGT----GCGTGCGTGAC
ACATGCGTTCTTCTACCTCTTGGCCTC---TTGATTTTCAGCTCTGATCAACCGGATTTCCAGGCGTTCCTCTGCTTCGG
CAGCTCGGTTGCTTCGACCAGGTTCCTGCTGCAGGACGAGTTCAACATCCAGACGACCCAGTGCGACAACTGCATCATCG
TACTTACCACCATCACCTCATTCCCGCTGCTATCTTCGTTTCACAACTTTGCAGGTGATTATAACTTACCTCTGAACCCG
TTTTGGTCACTGCGTGCGTGCAGAGCTCCATGTTCTGCCTCCAGCAGCTGGCCTGCATCTGCTCCCTGGTCGCCTGCATC
GTCGGCAACCAGGAGCTCTCCGAGGCTTCGCAGGCGATCTCCTGCGTCTCCGACACGGTCTACTGGACGTAAGGCACTCT
CTGACTTCTTCCCCAGGCCATTTGAAGAAACATTCTTTCTGAACTGCATGAATTTGTTTGTGCAGGGTTTGCTCCTGTAT
GCAGGTAATGGCACGCGAGCTTTGCTTCGCTCAAACAACTGAAGTTTTCTTATTCCTTGATGACATTGAACACTTGAGCC
GACGCTGACACGGCGATCGATCTAATGGAATTTTCCAGACGCAGCACAAGGTGGAGATGGACAAGAGGGACGGCAAGCTG
GGCGGGGCTGCGATGACGGTCCCTCCGATGCAGCAGATGTCGCGCATCGATCAGCCGATGCCGCCTCAGGTCGGGTATGC
GCCGCAGCCAGCGTCCAACAGGTAG-------------------------------------------------------
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>chr1A_1_TraesCS1A01G199200
GGCTGATACGCACACGCACGCTC-GGTTGTTTGTTAATCGATGTTTCTGTTCGCTAATCGCTCGCCTCCTCCTGCGCTGT
TCGGCT------GCCTACCGCATGGAAATA----GCGCGCCTAGCGGCGGCGTTCGGAGGCTGGCCTTGGCCTCGGCGAG
CGGCCGGCGGCAGGATGAGCAGATCTGTCCCGGGGA----AGGCAGGAACGGC-TTGCAACCTTGCCTACTCGTTCCCTC
CTTCATAATCAGATTGGGTAAGATTGCTAACTGATGTGCCTATCCACATC--TAGGG----------------CGTAGAT
TTCAAGGTCAGGCCATTGAAATTTATCCAAGTTAGATCATG---ATTATAATATTATTCGAACATTTATCGCAACAGAGT
ATCACAAATTGAATCTGCCTCGTGGTTTTTT-GTAACACACTATTC----TATGTTCCATTTATTCGTACAAGCT-----
-------------------------CTCTAT--TTTGAATATATCCACAAATTACAACGATCAATTTATGTGAATTCCGA
ATCTG-TTTTCTC-ATCTT-------------------------------------------------------------
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--------------------------------------------------------GTAGTA-TTTTTTAGGACATTTGG
ATGGTAATTTGGATAGCTATATTTTTGCTTGGAACAAGGTGAG-------------------------------------
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--------------------------------------------------TTTGATTCCATGCATAGCCTGGTTTTATGA
CTTTTATTGTCAAGTCTCAAATTTATTT-------TG-TCTATGAAATTGAACATCGATATGTTACATATTAGTCCACTA
TAAAACT-----------------ACATTTTATGGC-------------TTTGTTTTTTCGTTATTAGTGTCGATTTGTG
GTTTTGAAGTTTGGGATTATTTTACA-----TGT--TGTATCTATCAGAACA---TCAAATTTTTATTTCGACATTAGAC
ACTTAGGCTAAAGCTTGCCCAGGCTCCAGAAAAATTCTGGCTCCGCCACTGCCGACCGGGACTGGCACCAAAGCGCGCCT
ACCTTAAGCGACCAGCCATCGCCAATTCGCCATTGCTACCTAAGTTAGCCAC--------AGCTCCCTCGCAGTCGCCGC
CAAGACGATCGCGTGGGACCGCGAGAGCCA--------------------------------------------------
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--GAGCAACCGAGTGCGCGCGGCGGCGAGATGGCGGCGTCGCAGGAGTACATGGACAAGGCGCTGCTCCGGCGGAGCTAC
CGCAACGTCTGGCATACCGACCTCACCAACGCCATCCAGGCGGATTTCCCATGTGCGTATCCTATTCTTCCAACTTATGA
AGC----AGTAGCTGTTTTGATTTCTTAAGATATGCCAGGACCTGA-CTTACTTTTTGTGTCTTTTTGTTCTTCCTTTTG
ATGCAGACTGCTGTCTGTCGCTGTGGTGGTGAGTGGGCACTGTTCCGATCCTCTGGA----------------TCCCAGC
TGATGAATTCTAACAAATGTGTATCTGTTTTGTGTTC--------TGATGTTATCCAGCGGCCCATGCGTCTCCTACATG
CTCCGCAGGCGTGCTCTCTACCACGACATGTCGAGGTGAGGCTTAAATTTGATTCTTCTAGTATTTCCTTTGATTT---G
TACTGGTGCAGTTCTCTGTTCTTCAGTCTCGCTAATCCATGCGTCTCTGTCGGCGTTCCAGATATGTGTGCTGCGCCGGG
TACATGCCATGCAGCGGCAGGTGCGGCGAGAGCAAATGCCCAGAACTATGCCTCGCAACAGAGGT----GCGTGCGTGAC
ACATGCGTTCTTCTACCTCTTGGCCTC---TTGATTTTCAGCTCTGATCAACCGGATTTCCAGGCGTTCCTCTGCTTCGG
CAGCTCGGTTGCTTCGACCAGGTTCCTGCTGCAGGACGAGTTCAACATCCAGACGACCCAGTGCGACAACTGCATCATCG
TACTTACCACCATCACCTCATTCCCGCTGCTATCTTCGTTTCACAACTTTGCAGGTGATTATAACTTACCTCTGAACCCG
TTTTGGTCACTGCGTGCGTGCAGAGCTCCATGTTCTGCCTCCAGCAGCTGGCCTGCATCTGCTCCCTGGTCGCCTGCATC
GTCGGCAACCAGGAGCTCTCCGAGGCTTCGCAGGCGATCTCCTGCGTCTCCGACACGGTCTACTGGACGTAAGGCACTCT
CTGACTTCTTCCCCAGGCCATTTGAAGAAACATTCTTTCTGAACTGCATGAATTTGTTTGTGCAGGGTTTGCTCCTGTAT
GCAGGTAATGGCACGCGAGCTTTGCTTCGCTCAAACAACTGAAGTTTTCTTATTCCTTGATGACATTGAACACTTGAGCC
GACGCTGACACGGCGATCGATCTAATGGAATTTTCCAGACGCAGCACAAGGTGGAGATGGACAAGAGGGACGGCAAGCTG
GGCGGGGCTGCGATGACGGTCCCTCCGATGCAGCAGATGTCGCGCATCGATCAGCCGATGCCGCCTCAGGTCGGGTATGC
GCCGCAGCCAGCGTCCAACAGGTAGTTCTGTGGGATCTTGGGCTGCCGTTGCGAGTGGGAAATGGATGGAGATCAAGTAG
CTGATATTATGTTCCTGTTTGTATGCCATTGTGACTTGATTTTTTTTTGAGAGGCATTATGACTTGATTTATGAGTGTGT
AAACTGTCCTCCTGTTATAGTAGGCGAATTTTGAGGCTTGGGGTCAGCTTAGAATTTTGTCATATTTTTTTGCATCCAAA
TAT----------------------ATCAATAGCAATCTACGTAGGGAATTTACTACAGAACCAGAACAGCCTCGTCATA
AAAGGAGAGACCTCTTCTTCTGTCACGGAGAAGAAAATCCCAGCATGATAAAGCAAACTCAAAG--TCCCAGGAGAGATG
CAAAAGAGTTTCCTCAGTGCTTTGTTAACAAAGGCTGCAATTATAATTATTCATATAGAAGTCTTTCCTCTTGAGCAGAG
CTTTGGTGTTTGTTCTGTCGTGGAGAGCCAACCAGAAAAAGATCTTACGTTTGAGTCTACTTTCATTCTTTGAGTTT---
--TTTTTTTTGAAAATCACATGGCCTTTAAAGTTTCCCGTAACGTTTGTATACATTTTGGTGGAGGAGTATTTGTTAGGC
TGATCACTGCAAATCCAGATGTCCTTTCCATCCAGCTGGGAGCCCTGTGGCAAAAGGTTTTGAAGCTCAATGAACTGATC
ATATGCTTGAACTGAAAATGGCCCATGGAAGAGTTCAGAAAGGTCAACAGAGGCCTTGACCAATGAAAGAGGCACCATAA
CATCTTTGGCAAAAGAGTGCAATTCAGGAAATTTATGAGCAAGTGCCCCATCAGTCCAATTATCATGCGAGAACAATATT
GTATCCCCTTCCTCATGCTTTACACACACAGTGTTGTTTTGAACTGAAAGCAGGAATGAGGTTCAACACACTTTGCATTA
GCCATCTGAGGGCGTATATATACAGTTACAGAAAGGGAAATGTTCCCAGACGGTGCACCGGCCGAGCGTTTCGGCCGGTC
CCGCGCACGCCGCT
>chr3B_1
GGCTGATACGCACACGCACGTTC-GGTTGTTTGTTAATCGATGTTTCTGTTCGCTGATCGCTCGCCTCCTCCTGCGCTGT
TCGGCT------GCCTACCGCATGGAAATA----GCGCGCCTAGCGGCGGCGTTCGGAGGCTGGCCTTGGCCTCGGCGAG
CGGCCGGCGGCAGGATGAGCAGATCTGTCCCGGGGAAGGCAGGCAGGAACGGC-TTGCAACCTTGCCTACTCGTTCCCTC
CTTCATAATCAGATTGGGTAAGATTGCTAACTGATGTGCCTATCCACATC--TAGGG----------------CGTAGAT
TTCAAGGTCAGGCCGTTGAAATTTATCCAAGTTAGATCATG---ATTATAATATTATTCGAACATTTATCGCAACAGAGT
ATCACAAATTGAATCTGCCTCGTGGTTTTTT-GTAACACACTATTC----TATGTTCCATTTATTCGTACAAGCT-----
-------------------------CTCTAT--TTTGAATATATCCACAAATTACAACGATCAATTTATGTGAATTCCGA
ATCTG-TTTTCTC-ATCTT-------------------------------------------------------------
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--------------------------------------------------------GTAGTA-TTTTTTAGGACATTTGG
ATGGTAATTTGGATAGCTATATTTTTGCTTGGAACAAGGTGAG-------------------------------------
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--------------------------------------------------TTTGATTCCATGCATAGCCTGGTTTTATGA
CTTTTATTGTCAAGTCTCAAATTTATTT-------TG-TCTATGAAATTGAACATCGATATGTTACATATTAGTCCACTA
TAAAACT-----------------ACATTTTATGGC-------------TTTGTTTTTTCGTTACTAGTGTCGATTTGTG
GTTTTGAAGTTTGGGATTATTTTACA-----TGT--TGTATCTATCAGAACA---TCAGATTTTTATTTCGACATTAGAC
ACTTAGGCTAAAGCTTGCCCAGGCTCCAGAAAAGTTCTGGCTCCGCCACTGC----------------------------
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>chr2A_8
-------ACGCACACGCACGTTCGGGCTGTTGGTTAATCGTTGTTTCTGTTTGCTGCTCGCTCGCCTCCCTCTGCGCTGT
TCGGCT------GCCTACCGCGCGGAAACA----GCCTAGCG-GCGACGGCGGCTGGAGGCTGGCCTTGGCCTCGGCACG
CGGCCAGCGGCGGGATGAGCGGATCTGTCCCGGGGA----AGGCAGGAACGGC-TTGCAACCTTGCCCACTCATTCCTTC
CTTCGTAATCAGATTAGGTAAGATTGCTAACTGATGTGCCTATCCACATC--TAGGGATGGATAGA-TTAGGGCTTAGAT
TTTAAGTTCAGACCGTTGATTTTTTTTCAAGTTAGATCATG---ATAAAAATATTATTTGAACATTCATTGCAACGAAGT
ATCACAAATTACATCTGCCTTGTGATTTTCT-TTAACACACTATTC----TATGTTCCGTTTATTCCTACAAGCT-----
-------------------------CTCTAT--TTTGAATATATCAACAAATTACAATGATGAATTTATGTGAACTCAGA
ATCTG-TTTTTT--ATCTT-------------------------------------------------------------
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--------------------------------------------------------GTAGTA-TTTTTTAGGACATTTGG
ATGGTAATTTGGATAGCCGTACTTTTGCTTGGAACAAGATGAG-------------------------------------
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--------------------------------------------------TTTGGTTCCATGCATGGCCTTGTTCTATGA
CTTTTATTGTCAAGTCTCAAATTCATTT-------TGGTCTATGAAACTGAATATCGATATGCTACATATTAGTTCACTT
TAAAACC-----------------ACATTTGTATGACTTTGTTTTTAAATTCGTTTTTTCGTTATTAATGTGGATTTGTG
GTACGGAAGTTTGAGGCTATTTTATA-----TGT--TGTATCTATCGGAACAACATCACGTTTTAATTTCGACATTAGAC
ACTTCGGCTCAAGCTTGCCCAGGCTCGACAAAAGTTCTGGCTCCGCCACTGCTGTCCG----------------------
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>chr7B_11
----------CACACGCACCTTC-GGTTGTTGGTTAATCGATGTTTCTGTTTGCTGATCGCTCGCTTCCCCCTGCGCTGT
TCGGCT------GCCTAC-GCATGGAAACAGCGCGCCTAGCG----GCGGTGTTCGGAGGATGGCCTTGGCCTCGGCGAG
CGGCCGGCAGCGGGATGAGCAGATCTGTCCCGGGGA----AGGCAGGAACGGC-TTGCAACCTTGCCTACTCGTTCCTTC
CTTCGTAATCAGATTAGGTAAGATTGCTAACTGATGTGCCTATCCACATC--TAAGG----------------CGTAGAT
TTCAAGGTCAGGCCATTGAAATTTATCCAAGTTAGATCATG---ATTAGAATATTATTCTGACATTTATCGCAACAAAGT
ATCACAAATTGCATCTGCCTCGTGGTTTTTT-GTAACACACTATTC----TATGTTCCATTTATTCCTACAAGCT-----
-------------------------CTCTAT--TTTGAATATATCCACAAATTACAACAATCAATTTATGTGAATTCCGA
ATCTG-TTTTCTC-ATCTT-------------------------------------------------------------
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--------------------------------------------------------GTAGTA-TTTTTTAGGACATTTGG
ATGGTAATTTGGATAGCTATACTTTTGCTTGGAACAAGGTGAC-------------------------------------
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--------------------------------------------------TTTGGTTCCATGCATAGCCTGGTTTTATGA
CTTTTATTGTCAAGTCTCAAATTTATTT-------TGGTCTATGAAATTGAACATCGATATGTTACATATTAATCCACTT
TAAAACT-----------------ACATTTTATGGC-------------TTTGTTTTTTCGTTATTAGTGTCGGTTTGTG
GTTCTGAAGTTTGGGATTATTTTACA-----TGT--TGTATCTATCAGAACA---TTAGATTTTTATTTCGACATTAGAC
ACTTAGGCTCAAACTTGCCCAGGCTCCAGAAAAGTTCTGGCTCCGCCACTGC----------------------------
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>chrUn_11
----------CACACGCATGTTC-GGTTGTTGTTTAATCGATGTTTCTGTTCCCTGATCGCTCGCCTCCCCCTGCGTTGT
TCGGCT------GCCTACGGCATGGAAACA----GCGCGCCTAGCAGCGGCGTTCGGAGGCTGGCCTTGTCCTCGGTGAG
CGGCCGACGGCGGGATGAGCAGATCTATCCCGGGGA----AGGCAGAAACGGC-TTGCAACCTTGCCTACTCGTTCCTTC
CTTTGTAATCAGATTAGGTAAGATTGCTAACTGATGTGCCTATCCACATC--TAGGG----------------CGTAGAT
TTCAAGGTCAGGTCGCTGAAATTCATCCAAGTTAGATCATG---ATTAGAATATTATTCGAACATTTATCACAATAAAGT
ATCACAAATTGCATCTGCCTCGTGGTTTTTT-GTAACACACTATTC----TATGTTCCATTTATTCCTACAAGCT-----
-------------------------CTCTAT--TTTGAATATATCCACAAATTACGACGATCAATTTATGTGAATTCCGA
ATTTG-TTTTCTC-ATCTT-------------------------------------------------------------
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--------------------------------------------------------GTAGTA-TTTTTTAGGACATTTGG
ATGGTAATTTGGATAGCTATACTTTTGCTTGGAACAAGGTGAG-------------------------------------
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--------------------------------------------------TTTGGTTCCATGCATAGCCTGGTTTTATGA
CTTTTATTGTCAAGTCTCAAATTTATTT-------TGGTCTATGAAATTGAACATCGATATGTTACATATTAATTCACTT
TAAAACT-----------------ACATTTTATGGC-------------TTTGTTTTTTCGTTATTAGTGTCGATTTGTG
CTTCTGAAGTTTGGGATTATTTTACA-----TGT--TGTTTCTATCAGAACA---TCAGATTTTTATTTCGACATTAGAC
ACTTAGGCTCAAGCTTGCCCAGGCTCCAGAAAAGTTCTGGCTCCGCCACTG-----------------------------
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>chr1D_13
------------CACGCACGTTC-GGCTGTGGGTTAATCGCCTTTCCTGTTCGCTGATCGCTCGCCTCCCACTTCACTGT
TCAGCT------GCCTATCGCGCGGAAACA----ACCTAGCA----GCGGCAGCCGGAGGCTGGCCTTG---TCGGCGCG
CGGCCGGTGGCGTGATGAGCGGATCTATCCCAGGGA----AGGCAGGAACGGC-TTCCAACCTTGGCTACTCGTTCCTTC
CT-CATAATCAGATTAGGTAAGATTGCTAAGTGATGTGCCTATCCACATC--TAGGGATGGATAGACTTAGGGCTTAGAT
TTTAAGGTCGGACGGTTGAAATTTATTCAAGTTAGATCATACTAATAAGAATATTATTTGAACATTTATCGCAACGGAGT
ATCACAAATTACATCCGCCTCGTGATTTTCT-TTAACACACTATTCTATATATGTTCCATTTATTCCCACAAACT-----
-------------------------CTCTATATTTTGAACATATCCACAAATTGCAACGATCAATTTATGTGAACTCCGA
ATCTGTTTTTTT--ATCTT-------------------------------------------------------------
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--------------------------------------------------------GTAGTA-TTTTTTAGGACATTTGG
ATGG------------CTATACTTTTGCTTGGAACGAGGTGACTT-----------------------------------
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--------------------------------------------------TTTGGTTCCATGCATGGCCTTGTTCTATGA
C-TTTATTGTCAAGTCTCAAATTTATGT-------TGGTCTGTGAAACTGAATATCGATATGTTACATATTAGTCCACTT
TAAAACTGAATATCGATATGTTACATATTTGTATGACTTTGTTTTTCATTTCTTTT-----TTCCTTATGTGGATTTGTG
TTTCGGAAGTTTGGGGCTATTTTATA-----TGT--TCTATCTATCAGAACA---TCAGATTTTGATTTCGACATTAGAC
ACCTAGGCTCAAGCTTGCCCAGGCTCCAGAAAAGTTCTGGCTCCGCCACTG-----------------------------
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>chr3B_13
------------CACGCACGTTC-GGCTGTTGGTTAATCGATGTTTCTATTTGCTGATCGCTCGCCTCCACCTGCGCTGT
TCGGCTTCGACTGCCTATCGCGCGAAAACA----GACTGGCG----GCGGCGGCCGGAGGCTGGCCTTGGCCTCGGAGCG
CGGCTGGCGGCGGGATGAGTGGATCTGTCCCGGGGG----AGGCAGGAACGGC-TTGCAACCTTGCCTACTCGTTCTTTC
CTTCGTAATCAGATTAAGTAAGATTGCTAACTGATGTGCCTATCCACACATGTAGG------------------------
-------TCAACCTGTTGAAATTTATTCAAGCTAGATCATG---ATAAAAATAGTATTCGAACATTCATCGCAACCAATT
ATCACAAATTACATCTGCCTCGTGATTTTCT-TTAACACACTATTC----TATGTTCCATTTATTCCTACAAGCT-----
-------------------------CT----------------------------------GAATTTATGTGAACTCCGA
ATCTGTTTTTTATATTGTACTCCCTCCGTAAAGAAATATAAGAGCGTTTGGATTACTAAAGTAGTGATCTAAATAT----
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---------------------------------TCTTATATTCCTTTACAGAGAGAGTAATATTTTTTTAGGACATTTGG
ATGGTAATTTGGATAGCTATACTTTTGCGTGGAATGAGGTTAGTT-----------------------------------
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--------------------------------------------------TG----------------------------
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>chr7B_13
------------CACGCACGTTC-GGCTGTGGGTTAATCGCCTTTCCTGTTTGCTGATCGCTCGCCTCCCACTTCACTGT
TCAGCT------GCCTATTGCGCGGAAATA----GCCTAGCA----GCGGCAGCCGGAGGCTGGCCTTG---TCGGCGCG
CGGCCGGTGGCGGGATGAGCGGATCTATCCCGGGGA----AGGCAGGAACGGC-TTCCAACCTTGCTACTCGC-------
---CATAATCAGGTTAGGTAAGATTGCTAAGTGATGTGCCTATCCACATC--TAGGGATGGATAGACTTAGGGCTTAGAT
TTTAAGGTCGGACAGTTGAAATTTATTCAAGTTAGATCATACTAATAAGAATATTATTTGAACATTTATCGCAACGGAGT
ATCACAAATTACATCCGCCTCGTGATTTTCTT-GAACACACTATTCTATATATGTTCCATTTATTCCCACAAACT-----
-------------------------CTATAT--TTTGAATATATCCACAAATTGCAACAATCGATTTATGTGAACTCCGA
ATCTGTTTTTTT--ATCTT-------------------------------------------------------------
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--------------------------------------------------------GTAGTA-TTTTTTAGGACATTTGG
ATGG------------CTATACTTTTGCTTGGAACGAGGTGACTT-----------------------------------
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--------------------------------------------------TTTGGTTCCATGCATGGCCTTGTTCTATGA
CTTTTATTGTCAAGTCTCAAATTTATGT-------TGGTCTATGAAACTGAATATCGATATGTTACATATTAGTCCACTT
TAAAACTGAATATCAATATGTTACATATTTGTATGACTTTATTTTTCATTTCTTTT-----TTCGTTATGTGGATTTGTG
TTTCAGAAGTTT-GGGCTATTTTATA-----TGT--TCTATCTATCAAAACA---TCAGATTTTGATTTCGACATTAGAC
ACCTAGGCTCAAGCTTGCCCAGGCTCCAGAAAAGTTCTGGCTCCGCCACTGC----------------------------
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>chr1D_76
----------------------------------------------------------------------------CTGT
TCGGCT------GCGTATTGCGCGGAAACA----GGCTAGCA----GCGGCCAGCGGAGGCTGGCCTTCGCCTGGGCGCG
CGGCCGGTGGCGGGATGAGCGGATCCATCGCCGGAT----AGGCAGGAACGTCTTTGCATCCTCGCCTACTTGTTCCTTC
CTTCCTAACGAGATTAGGTAAGATTGCTAACTGATGTGGCCATTCAGATC--TGGGGATAGATAGACTTGGGGCTTAAAT
TTTGATGCCAGGCCGGTTGAAATTATTCAAGTCCGTTGATG---ATAAGAATTCTAATTGAACTTTTATCGCAATCAAGT
ATCAGAAACGACATTCT--TCATGATTTTCTT-TAGCACGCTATTCG---TATGTTCCATACTACTCCTATTTTCATTTT
TTTAAGCTGTTCACAAATCACAACACT----------------------------------CAGTTTATGTGAATTGCAA
ATCTGTTTTTTT--ATCAT-------------------------------------------------------------
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---------------------------------------------------------TAGTATTGTATTAGGACATTTGG
ATGGTAATTTGGATAGCAATACTTTTGCTTGAAACAAGGAGAGTTTGA--------------------------------
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-------------------------------------------------------TTCCGTGGATGACCTGATTCTATAA
CTTCTATTGTCAAGTCTCATATTTATTT-------TG-------AAACTGAATATCAATATATTACATATTAGTTCACTT
CAAAATT-----------------ACGTTTGTATGACTTTGTTTTTCACTTCGTTATG--------AATGTGGATCTGTG
CTTCGGAAGTTTGGGACTATTTTATACTGTATGT--TGTATGTATCTGAACA---TTCGATTTTGATTTCAAGATTAGAT
ACTTAGGCTTAAGCTTGCCCAGGCTCCACCAAAGTTCTGGCTCCGCCACTGCC---------------------------
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>chr5D_143
CGGCG---------------------------------------------------------------------------
-------------------------------------------------------------------------------G
CGGCAGGCGGCGGGATGAGCGGATCTGTCCCGGGGA----AGGCAGGAACGGC-TTGCAACCTTGCCTACTCGTTCTTTC
CTTCGTAATCAGATTAGGTAAGATTCCCAACTGATGTGCCAATCCACACATGTAGGGATGGATAGA-TTAGGGCGTATAT
TTTAAGGTCAACCCGTTGAAATTTATTCAAGCTAGATCATG---ATAAAAATATTATTCCAACGTTCATCGCAACGAAGT
ATCACAAATTACATCTGCCTCGTGATTTTCTT-TAACACACTATTC----TATGTTCCATTTATTCCTACAAGCT-----
-------------------------CT----------------------------------GAATTTATGTGAACTCCGA
ATCTGTTTTTTATATTGTACTCCCTCCGTAAAGAAATATTAAAGCGTTTGAATTACTAAAGTAGTGATCTAAACACTCTT
ATATACCTCCGCGAACGGAAAAAAGTCCTCCTTTCAGCCATCCAGGCCTTGGACTACCGCGCGGACACCTCCGGGATCTC
CCCGGATGAGTGGATGGTGCGATATGATCTCGAGGATCAGCTCGCCACCATCTACACGGATGAAGAAGCTTACTGGAGGC
TCTACGGTACCCAGCGTTGGGTGCTGCGGGGCGATGCTAATACGGCATATTTCTAGGCGATCGCGAATGGGCGGCGACGT
CGGAACTCCATCCACTGTTTGTGGGATGGTGATTCCCAGCTCGTCCGCCCCTTGGACATCCGGACGCATGTAGATGGCTT
CTATAAAGCCCTATTCTCCCCCACCCCTTGGGGTGGGATCGCTCTGGCGCCCGACATCTGGTCGGGCGCCCAGCTTGTGT
CTGTTGCGGACAATGCCGCCTTAGTTGCCCCGTTCTCCGAGGAGGAAGTCCTCGCGGCGATTAAGGGCATGAACGCCTCC
TCGGCGCCGGGGCCGGATGGACTGCCAGTCTCCTTTTTTAAAGCATTCTGGCAGACCATCAAACCTGAGATCATGGCTCT
CTTTGACGAGTTTTTCTTAGGGACCATGGATCTTGGGCGCCTGAACTATGGGGTAGTCACTCTTATCCCCAAAGTTCTGG
GTGCGACGGACATCCGCCAATTCCGGCCCATCACTGTGATCAGTGTGATTTTTCGGATCCTGGCCAAAGGGTACGCCAGT
AGGGTGACCCGGCTCGCCGACTCGATCACTCACCCCAACCAGTGGGCTTTCATTCAGGGCCGTTTTATCCTGGATGGGGT
GTTGGTCTTCCACGAGGTCCTTCACGAAGTCCGCTCCAAGCACCAACGGGCGGTATTCCTGAAGCTCGATTTCCATAAAG
CCTATGACACTGTACACTGGCCCTTCCTTCGGGAAGTTTTACTCCGTAAGGGCTTTGATGACCGTTGGGTGACCAGAGTT
ATGCAGCTTGTCTCCTGCGGTCGGACCGCTATTAACATTAACGGTGAGATCGGCCCCTTCTTCCCCACGCTCTGTGGGGT
TCGCCAAGGCGACCCTTTCTCGCCGTTCCTGTTTAACATGGTGGTGGACGCCCTTGCGGCCATTCTTGACAAAGCCAAAT
CGGCCGGTCACATTCACGGCGTGGTCCCACACCTTGTAGGAGGGGGTGGGGTATCCCTCCTACAATATGCTGACGACACC
ATAACAATGGTTGAGGGCTCCGCGTCCGATATTACCAACCTGAAGTTCCTCCTCCTCTGCTTCCAACAGATGTCCGGTCT
GACCATCAACTTCGATAAGAGTGAAGTGATGGTGCTGGGATACCCACCAGTGGAGGCCCAGGGCATTGCGGACCGGCTTA
ATTGCCGCCTGGGTTCTTTCCCCACGACCTATCTGGGGATCCCCATTAGTGACTCGCGCCTCACCATAGCGGACCTCCGC
CCTTCCGTGACCCGGATGCAACACCGGGTCGAGCCCTGGAAGGGCCGGTGGCTCTCGAAGGCGGCTCGGGTAATCCTCAT
CAACTCCTCGCTGGCTAGCCTCCTCTGGTTCCTCATGAGCTTCTATAGACTCCATGAGACGCTTCACCAGGAGGTGGCCA
AATATCAGTCCAGATTTTTCTGGGCTGGCGAGGGGGACAAGCAAAAATACCACATGGTGAGCTGGCCGGACATTTGCAAA
CCCAAGGACCAGGGAAGTCTGGGGATCTTGTCCTCCCGTCGCATGAACATTGCTCTCCTGACCCGATGGCTATGGCGTAT
CGCCAACGGGGAGGGCGGCCTCTGGCTTACCATCATTCAAAATAAGTACCTCCGAGGACAACCTCTTGCTTTCTGCCAGC
GCTCTAGGGGATCCCAGTTCTGGCAGGCTGTGATTCAGCTCCTCCCCGTGCTCCGGATTGGCACTTCCATCTCGGTGGGT
TCCCGGTCCTCGACCCTGTTTTGGTTCGACCGCTGGCTTGGGGATTCCCCTCTGGCCGCCCGCTTCCCGGGCTTATTTGC
CATTGCGGCAGACCCCCGAATTTCCGTCGAGACGGCCCTTATTGACCTAGGGGCCTCGCCTTTCGGCGCTCCTTTGGCCC
CCAGGAGGTTGACGCGTGGGACGCCCTTCTACAGGACATCGCTCTCTTGCCAATGGATGTAGAGGGCGCCGCCGACTCCA
TGGCGTGGCGCCTGGAGCCCTCGGGAAGCTTCTCCACGAAGTCTTTGTATGCTGCCATCGCCCCTTCGTTGGCCCCTGAG
CCCTTTAGCCTGATCTGGGACATTCGTCTCCCCCTCAAGATCCGGATATTCCTCTGGCAGTGGATCCGGGGACGTCTCCC
CTCTGGGGTGGAAGTCCGCAAGCGCAATGGCCCTGGGGACGGGATGTGTCCCCTGTGCGCCACGGTGGAGGATTCGAACC
ACATTTTCTTCAACTGCTCCACTGCCCAGTTCCTGTGGTCGTGCTTCCGTGAAACGGTCGGTGGACAGTGGTGCAATACC
AACTTCCCTGACCTACTCGCGGAGATCCATGCCTCCTCCCCGCGTTACCGCCATATTAGATGGCTGTGCATTGGGATCCT
AGCATGGACGCTTTGGAATATTCGCAACGAGCTCGTTATTCAGAAAGTGCCTCTGCGACGTGCGACTGACGTGATCTTCA
AAATGTGTGGCTATTTGCAGCTTTGGCGGCCGCTTAGGCGCCCCCAGGACCGGAGCGTCATCGACACCCTCGTCACCGAC
CTTCGATCGATGGCCTTCCGCATGGCACCCCCACTTCCGCCACCGCCGCCGGAGCCTGATTAGGCTGGACTCGTCCGTGG
CGGTCTTTGTGTGTGTCCTTTTGTTCTTAGGGCTTGTTGAGCTGTGCCCTCAGCATTAACCCTACTGGTACCGTGCGGTG
TGTGCGGCTGTGGCTTTGAGTGTTTGTGTGTGTGTGTGTGAACTCTGTTGGCTGTTTGGCTCGGGCGGTTTGCTTTATCT
ATAAAGCGGGGCGAAAGCCTTTTTCGGTAACACTCTTATATTTCTTTACAGAGGGAGTAGTATTTTTTTAGGACATTTGG
ATGGTAATTTGGATAGCTATACTTTTGCTTGGAACGAGGTTAGTTTGCGAAAGTGCTCTTTTGATCCTGAGCTCATATGC
TCCCGCATGCACAGTAAAATCCAAAAACATAGTAAAAATTCAAAAAATCTGACTTTTTTGGTCATGAACATTAATGAATA
TTCTAACTGCGTGCAAAGTTTCAGGTTAAAATGACATTCGTGGAGGTCTGGACAAAAATACCAAAATCGATGCTCCAAAA
TGCTTCCAACAATAGTCTTTTTGGACCATCGATTTTAATTTTTTTACCCAGACCTCCACGAATGTCATTTCAACCTGAAA
TTTTGCACGCAGTTAGAAAATTCATCAATGTTCATCACAAAAAAAAAACAGATTTTTTTGAATTTTTCTTGGATTGTACT
GTTCATGCAGGAGCATGTGAGCTCGGGATCAAATACTCCATGTCCGTTAGTTCGGTTCCATGCATGGCCTGCTTCTATGA
CTTTCATTGTCAAGTCTCAAATTCATTTTGGTCTATG-------AAACTGAATATCGATATGTTACATATTAGTCCACTT
TCAAACT-----------------ACATTTTTATGACCTTGTTTTTAAT----TTTTTTTGTTATTAATGTGGATTTCTG
GTAAGGAAGTTTGGGGCTATTTTATA-----TGT--TGTATCTATCAGAACA---TCACATTTTTATTTCGACATTAGAC
ACTTAGGCTCAAGCTTGCCCAGGCTCCAGAAAAGATCTGGCTCCGCCACTG-----------------------------
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>chr4B_193
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-----------------------------------------------AACGGC-TTGCAACCTTGCCTACTCGTTCCTTC
CTTCGTAATCACATTAGGTAAGATTGCTAACTGATGTGCCTATCCACACC--TAGGGATGGATAGA-TTAGGGCTTAGAT
TTTAAGGTCAGACTGTTGAAATTTATTCAAGTTAGATCATG---ATAAAAATATTATTCGAACATTCATCGGAACGAAGT
ATCACAAATTTCATCTGCCTCGTGATTTTCTTTTAACACACTATTC----TATGTTCCATTTATTCCTACAAGCT-----
-------------------------CTCTAT--TTTGAATATATCAACAAATTACACTGATGAATTTATGTGAACTACGA
ATCTGTTTTTTTTTATCTT-------------------------------------------------------------
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--------------------------------------------------------GTAGTGTTTTTTTAGGACATTTGG
ATAG------------CTATGCTTTTGCTTGGAACAATGTGAG-------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------TTTGGTTCCATGCATGGCCTTGTTCTATGA
CTTTTATTGTCAAGTCTCAAATTTATTTTGGTCCATG-------AAACTGAATATCGATATGTTACATATTAGTCCACTT
TAAAACC-----------------ACATTTGTATGACTTTGTTTTTAAATTCGTTTTTTCGTTATTGATGCAGATTTGTG
GTACGAAAGTTTGAGGCTATTTTATA-----TGTTGTATATCTGTCGGAACA---TCACATTTTAATTTCGACATTACTC
ACTTAGGCTCAAGCTTGCCCAGGCTCGAAAAAAGTTCTGGCTCCGCCACTGC----------------------------
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>chr1D_842
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--------------------------------------------------GCCGACCGGGACTGGCACCAAAGCGCGCCT
ATCTTAAGCGACTAGCCATCGCCAACCCGCCATTGCTGCCTTGCTAGATAAGCTATCCAGAGCTCCCTCGCAGTCGCCGC
CAAGACGACCGCGTGGGACCGCGAGGATGCTGAAATGTTCAAGAACCCTCAACAACGAATATTACAAGTGTACGCGTCGG
CTAGGGAGCCTTGACTACGGTGGCCTCCGTGGTCTTTTTTGAGTGTTTGGCGAGCCTGCACGCTCTGTACGGGCTATGCT
TTGTAATTCGATAGTGGCTTGTTAAGCTCCGTCCGAACTTTGTGTCATGGGCCGGTGTGGCTTTTGGTTGTTTTAAGACT
GGTTGGTGTGCTACTCTGTTGTTGGGGTTTTATTAATTTAAAGCCGGATGTATCTGGCGTCTTCATTCTAAAAAAAGAGC
CGGAGCAACCCAGCGCGCGCTGCGGCGAGATGGCGGCGTCGCAGGAGTACATGGACAAGGCGCTGCTCCGGCGGAGCTAC
CGCAACGTCTGGCAGACCGACCTCACCTGCGCCATCCAGGCGGATTTCCCATGTGTGTATCCTATCCTGCCAACTTATGA
AGTACTGAGTAGATGTTTTGATTTCTCAAGATATGTCAGGACCTGATCTTATTTTTTGCGTCCTTTTGTTCTACCTTTTG
ATGCAGACTGCTGTCTGTCGCTGTGGTGGTGAGTGGGCACTGTTCCGATTCTCCGGATCCCAGGCGTTGGAGTTCCCAGC
TGATGAATACTAACAAC--TGTATCTGTTTTGTGTTTTGAACTTTTGATGTTATCCAGCGGCCCATGCGTCTCTTACATG
CTCCGCAGGCGTGCTCTCTACAACGACATGTCGAGGTGAAGCTTAATTTTCATTGTTCTAGTGTTTCCTTTGATTTGTAG
TACTGGTACAGTTCTCTGTTCTTCAGTCTCGCTCATCCATGCGTCTCTGTCGGCGTTCCAGATACGTGTGCTGCGCCGGG
TACATGCCATGCAGCGGCAGGTGCGGCGAGAGCAAATGCCCAGAACTATGCCTCGCAACAGAGGTGCGTGCGTGCGTGAC
ACATGCGTTCTTCTACCTCTTGGCCTCCTCTTAATTTTCAACTCTGATCAACCGGATTTGCAGGCGTTCCTCTGCTTCGG
CAGCTCGGTTGCTTCGACCAGGTTCCTGCTGCAGGACGAGTTCAACATCCAGACGACCCAGTGCGACAACTGCATCATCG
TACT----------ACCTCATTCCCACTGCCA---TCGTTTCACAACTTCGCAAGTGATCACTTATCATCTCTGAACTCG
TTTTGGTTACTGCGTGCGTGCAGAGCTTCATGTTCTGCCTCCAGCAGCTGGCCTGCATCTGCTCCCTGGTCGCCTGCATC
GTCGGCAACCAGGAACTCTCCGAGGCTTCGCAGGCGATCTCCTGCGTCTCCGACGCGGTCTACTGGACGTAAGACACTCT
CTGACTTCTTCCCCAGGCCATTTGAAGAAACCTTCTTTCTGAACTGCATGAATTTGTTTGTGCAGGGTTTGCTCCTGTAT
GCAGGTAATGGCACACGAGCTTCGCTTCGCTTAAACAACTGAAGCTTTCTTGTTCCTTGATGACATTGAACACTTGAGCC
GACGCTGACACGGCGATCGATCTGATGGAATTTTCCAGACGCAGCACAAGGTGGAGATGGACAAGAGGGATGGCAAGCTG
GGCGGGGCTGCGATGACGGTCCCTCCGACGCAGCAGATGTCACGCATCGATCAGCCGATGCCGCCTCAGGTCGGGTATGC
GCCGCAGCCAGCGTCCTACAGGTAGTTCTGTGGGGTCTTGGGCTGCCGTTGCGAGTGGGAAATGGATGGAGATCAAGTAG
CTGATATTATGTTCCTCCTGTTT---------------------------------------------------------
-----------------TAGTAGGCGAATTTTGAGGCTTGGGGTCAGCTTAGAACTTGTCATA--TTTTTTGCATCCAAA
TATTCCAGCAAGTGAGAATGATTATATCCATAGCAATCTACATATGGAATTTACTCCAGAGGCAGAACAGTCTCGTCATA
AAAGGGGAGACCTCTTCTTCTGTCACGGAGAAGAAAATCCCAGCATGATAAAGCAAACTCTCACAATCCCAGAAGAGATG
CAAAAGAGTTTCCTCAGTGCTTTGTTGACAAAGGCTGCAGTTGTAATTATTCATAAAGAAGTCTTTCCTCTTGAGCAGAG
CTTTGGTGTTTGTTCTATCGTGGAGAGCCAACCAGACAAAGATCTTACGTTTGAGTCTACTTTCATTCTTTCAGTTTTTA
CTTTTTTTTTGAAAATCACATGGCCTTTAAAGTTCCCCATAAGGTTCGCATACATTTTGGTGGAGGAGTATTTGTTAGGC
TGATCGCTGCAAATCCAGATATCCTTTCCATCCAGCTGAGAGCCCTGTGGCAAAAGGTTTTGAAGCTCAATGAACTGATC
ATATGCTT-AACTGAAAATGGCCCATGGAACAGTTCAGAAAGGTCAACAGAGGCCTTGACCAATGAAAGAGGCACCATAA
CATCTTTGGCAAAAGAGTGCAATTCAGGAAATTTATGAGCAAGTGCCCCATCAGTCCAATTATCACGCGAGAACAATATT
GTATCCCCTTCCTCATGCTT---ACACACAGTGTGTTTTGAAC-------------------------------------
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>SNPs
--------------------S----------------------------------S------------------------
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----------------------------------------------------------S---------------------
---------------------------------S----------------------------------------------
-S----------S------------SS----------S---SSS-SSSSS-S----------------------------
--------S----------------SSSSS--------------------------------------------------
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----------S--S------S-----------------------------------------------------------
--------------S------------SS--------------------------S---------S--S-----------
--S---------S-------------S--------S---------------S------S---S---------S-------
-------------------------------------------------S---S--------------------------
--------S-------SSS-----------------S------------------------------------S------
---------------------S-----------------S------S---S---S-------S-----------------
-------S-------------------------S------------------------------S---------------
--------------------------------------------------------------------------------
--------------------------------S-------S------------------S--------------------
--------------------------------------------------------------------------------
----SSSSSSSSSS-----------S----S-SSS--------------S---S-----S-SSSS-S-S--------S--
-------S-------------------S----------------------------------------------------
--------------S---------------------------------------S------------------S------
-------------------------------S------------------------------------------------
--------------S-------S--------S------------S------S----------------------------
-----------------------S----------------------------------------------S---------
----------------------------S------------S--------------------------------------
----------------S-----------------S---------------------------------------------
----------------SS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS-------------------------------------S--SSSSSSSS---------------
----------------------------S------------S--S----------S----SS--------S---------
-----S------------------------------------------------------SS-S--------S-------
--------------------------S------------S--S------------S------------------------
----------------S-------------------S----------------------------------S--------
----------------------------------S---S---S---S-S-------------------------------
-----S--------------S-----------------S-----------------------------------------
--------S---------------------S-------------------------------------------------
-----------------------------------------------------------------S--------------
--------------------SSS-----------SS---SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS
>forward_4434
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--------------TTGCCCAGGCTCCAGAAAAA----------------------------------------------
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>reverse_6536
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-------------------------------------------------------ACAGAACCAGAACAGCCTCG-----
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--------------
