>input_sequence_54645
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-------------------------------------------------------------------------------A
TGGATTGGAAACCTATGGTGACGATGTTGGCGGTGGTCACCGTGTTCGCGGTGATGAACACGCTGACAAAGATGGCTTTT
AACGAAGGGATGCACACCACCGTCCTCATCGTCCTCCGCCAGCTCACCGCCACGCTCTTCCTCGCCCCGATCGCCTACTT
CAAAGAGAGGTTTGTGTCAGCGCTAATTAATCTA-----------------GAGTAATG-AAGCTTTTATTTTCAGAAAA
GACGCCAATTCCTGTTCTTGAGTTTGCTCATTTCTATGTGGTTTCCATG--TATATATGTAGGAAGACTAGGCCTAAGAT
GACCACAGAGATCTTCGTCTACCTCTTCTTGAGTGCCTTGCTCGGGTAAT-AAGATATTTTGTTTAATCATAGCAAGTGT
TGACAGA----------------------GCTTAATTGTAGCAAGAGTAGCAAGTGTTAATCAGTCTAAATCAGTCTTCA
GTTTCATGCGCTAATTAATCCATGGCAATGGCAATGGCATGG--CAGAGCGTCCCTAACCCAGTGGCTCTTCTTCTTTGG
CCTGCGGTACACGACGGCGACGTTCGCGAGCGCCTTCATCAACATGACCCCCATGTTCACCTTCCTGCTGGCGCTGCCCT
TCAAGATCGAGAAGCTCGACGTGGCCACCGGCTCCGGCGCAGCCAAGCTCACCGGCACGGCCGTGGGGCTGGCCGGAGCG
ATTTTGATGGCGCTCTACCAAGGCCCGGCCCTGACGGGGGCGCCGACGACGGACCATCATGCTGCTGCCGGTGCCCATG-
-----GTGGAGGCGCGTGGAGGTGGGCGATCGGGTCGGCGGCGCTGCTGGGCGGCTCGGCGAGCTGGTCGCTGTGGTTTA
TATTACAGTCCAAGATCGGCACCAAGTACCCCGCTCTCTACTCCAGCACGGCGTGGACGTTCCTGCTGAGCACGGCGCAG
ATGGCGGCCGTCGGGGCGGCGACGGAGGCGATGACCCTCCAGGTGTGGCTCCCCGGCACGGCGCTGAAGGCCGTGACGGT
GCTGTTCGTGGGAGTGGTGGGGTCCGGGCTGGGTTTCCTGGCCATGTCGTGGTGCGTGGAGCGGCGCGGGCCCGTGTTCA
CCACGGCGTTCATGCCGCTCATCCAGATGATCGCCGCCGGGATCAACGTGACGGTGCTCCGCGAGCAGCTCCACCTCGGG
AGCGTGGTCGGGTCGGCGCTCGTCGTCGTGGGGCTCTACTTGGTCCTCTGGGGGAAGAGCAACGAGGCGAGCAGCAAATC
CAAGTTGCCTCCTCCGTCAAATTCCAAGCTCGCGTTGGATGAGGAAGCAGAGCATGGCGGTGATTCACGGATCATGCAGA
GTGTGTGA------------------------------------------------------------------------
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>chr6B_1_TraesCS6B01G015700
CATTTCTTTTGGTAGATGATAATTTCCTTCATTACTTTTGGATGGCCGGTCTAGTATGCGAGTCATTCATGGATGAGCAT
ATTGGAG------CACACAGTTTTTTA-TTCAAATTTAAAAATTTCAAAAGTATGAATTTGAAATATTTTAGAATTGTGT
ACGATAAAAACATAATGATTTGATTATTCTAATGTGAAATTGGAGGTCATATGCACGTATATAAGAGCAATAGAAGAGA-
-ATGAAATATAGGGGCAACACTTCTATAAAATCTGTCAAAGCAATGCACCCTAATAATCCTAGAAAAAAAAAGTAAGGGG
CTGCAACTAAATTGGGTTTAGGGTCTTC--CTTTTTAGAGTATCTGTTAGATTAGCGCTAATACGA-TCGTGCATGC---
------ATATGGCCCAACACATATTGGTATAACATTCTTCAGTGCA--C-AAATTAAAGTAAATAATGATGTACTGATTT
AACTAATCAAGTCATAGAATGTTGTACACATGCACCTCCATAGATTGTTTGCAGGGCATGAGTGGATACCGTTAATAGTC
TCACTACAAGCATGTCGGATGCTATAATGTAAGGTACTGAATTAGCCAGTTAATCCATGTAAAGCTAACTACATGCAAAG
ATTCTTCCATTTCTT-TTGCTACATGATAATGCCTTGTTCCATTACTACTT-----TTGGAGGGCCGGTCTAGATAGCTA
----ATGCCACTATGCCAGTCATGCATGGCCGAACACATTGCACACAAATTT--AAAGCAAATAGTGATGTACTGCTGAT
TTAACTAGTTAAATTGTAGAATATTGTACTCATGGATCTCCAAAGATTGTCTGCAGGGCATGAGTGGAGGCCATAAATAG
CCCTTCCACTAACATGTCTCTTGTTATAAATCAAGGGCCTAGTTTAGTTAGTTAATTAGTATCACACTCATCATATAGCT
TTTTTCTGAAAAGAAAGGCGAAGCCTCTCTCACCATATATCGAGCTAGTTAACTTGATTGCGTTGATCAAG---GGAGAA
TGGATTGGAAACCTATGGTGACGATGTTGGCGGTGGTCACCGTGTTCGCGGTGATGAACACGCTGACAAAGATGGCTTTT
AACGAAGGGATGCACACCACCGTCCTCATCGTCCTCCGCCAGCTCACCGCCACGCTCTTCCTCGCCCCGATCGCCTACTT
CAAAGAGAGGTTTGTGTCAGCGCTAATTAATCTA-----------------GAGTAATG-AAGCTTTTATTTTCAGAAAA
GACGCCAATTCCTGTTCTTGAGTTTGCTCATTTCTATGTGGTTTCCATG--TATATATGTAGGAAGACTAGGCCTAAGAT
GACCACAGAGATCTTCGTCTACCTCTTCTTGAGTGCCTTGCTCGGGTAAT-AAGATATTTTGTTTAATCATAGCAAGTGT
TGACAGA----------------------GCTTAATTGTAGCAAGAGTAGCAAGTGTTAATCAGTCTAAATCAGTCTTCA
GTTTCATGCGCTAATTAATCCATGGCAATGGCAATGGCATGG--CAGAGCGTCCCTAACCCAGTGGCTCTTCTTCTTTGG
CCTGCGGTACACGACGGCGACGTTCGCGAGCGCCTTCATCAACATGACCCCCATGTTCACCTTCCTGCTGGCGCTGCCCT
TCAAGATCGAGAAGCTCGACGTGGCCACCGGCTCCGGCGCAGCCAAGCTCACCGGCACGGCCGTGGGGCTGGCCGGAGCG
ATTTTGATGGCGCTCTACCAAGGCCCGGCCCTGACGGGGGCGCCGACGACGGACCATCATGCTGCTGCCGGTGCCCATG-
-----GTGGAGGCGCGTGGAGGTGGGCGATCGGGTCGGCGGCGCTGCTGGGCGGCTCGGCGAGCTGGTCGCTGTGGTTTA
TATTACAGTCCAAGATCGGCACCAAGTACCCCGCTCTCTACTCCAGCACGGCGTGGACGTTCCTGCTGAGCACGGCGCAG
ATGGCGGCCGTCGGGGCGGCGACGGAGGCGATGACCCTCCAGGTGTGGCTCCCCGGCACGGCGCTGAAGGCCGTGACGGT
GCTGTTCGTGGGAGTGGTGGGGTCCGGGCTGGGTTTCCTGGCCATGTCGTGGTGCGTGGAGCGGCGCGGGCCCGTGTTCA
CCACGGCGTTCATGCCGCTCATCCAGATGATCGCCGCCGGGATCAACGTGACGGTGCTCCGCGAGCAGCTCCACCTCGGG
AGCGTGGTCGGGTCGGCGCTCGTCGTCGTGGGGCTCTACTTGGTCCTCTGGGGGAAGAGCAACGAGGCGAGCAGCAAATC
CAAGTTGCCTCCTCCGTCAAATTCCAAGCTCGCGTTGGATGAGGAAGCAGAGCATGGCGGTGATTCACGGATCATGCAGA
GTGTGTGATGAGCTGCTGCGTCAAGGTGATCAAGGTGGAATCATCTCTCGGCAACAAAAGGAGGAGGACATAGTTCGCTA
-----------TTTTCTTCATCTTTTTACTAGAATCAAGTGAACTTTAGATAGGTTATTGGAAATAATTCACGTGGATTA
GTCAACGTGGATCATTGTTCAAACGGGTAAAGAT-TTTTACTTTTCAATACAAGGCTTTACACTCCTCGGCCCTCACTTT
A--AATTAACAAAGCTCTTGACGACTATA--GTGCAACTACAAAGTGGAAAAAAGCAAGCAGGAGATAAACATGTGGCTA
GCTCTCCCGCCCCACGTCGCCTTAGAGTATTTAATCAAAAACTGTCCCATTTCATAAAAACATGTCCAGAAACTATCACT
TTATAAATTTATCT---CAAAAACTAC----------------------------CATTTTTTTTACTAACCCGTAGCAA
AAAAATACCATTTTCAAAAAATGACAAGTTTAAAAGATTTAAACACGTTTATAACAAGTGGGGCC---C-CCGTCAGGGC
TGACGTCGCAAGTCAACAAGCGCACGAGAAGACGGTGAGCACGCCAGGAGGCCAGCATGCGGCTGCGATCCGCACACCCG
GCGGCAGCACGCGGTGGCGACGCCCCGATCGGGCACTCCGACGGACGCACGCTGCTCGACCGCACGCGGCCACCCAGCGC
TAGCTTGCTAGCACCAACGAGCAAGTATGGATGGCTTGCCGACCAGCCAGCGCGAGCAGGCATGCATGCGGCTGCACAAC
CAGCGGGAGCACGCAC----GGCTTGGCGACGGGCCAGCGCGAGCATGCGGCTCGGCTCGACGG-------------CTG
CGCGCGGCTCGACGGCTGCGCGAGCACCCATGGGACGGCTGCGGCGGCCCGCTTGCACTTCTCCACGCGACAGCTACAGC
AGCGAGCTCGGATGCCGGCCCGCACGCGACCGCAACCAGGGCCGGCCCTGAGGGGGTGGCAGGGGGGCGGCCGCCCAGGG
CCCCCGAAATCTAAGGGCCCCCTCTAGGGTTTGCAA
>chr6B_1
CATTTCTTTTGGTAGATGACAATGTCTTCCATTACTTTTGGATGGCCGGTCCAGTATGCCAATCATGCATGTC-------
-TAAACATATTGTCACACATTTTTTTT---------TGAAAGTTTCAATAGTATGGATTTGAAATATTTTTGAATTACGC
GAGATAGAAACATAATAGTTTAATTAGCATAATGTGAAATTGGATTTCATATGCACAGATAGAAGAGAAAGGGA--AGA-
-ATGAAATATAGGGCCTACACTTTTATGAAATTTGTCAAAGCAGTGCACCCTAAAAATCCTAGAAAAATTTT---AGGAG
CTGCATCTAAAATAGGTTTATAGCCTCTATGTTTCTAGTGTACCTCTTAGAGTTGCTCCAATAGAT-TCGTGTGCATGCA
TATGGGATATGGCCCAACACATATTGATATATCATTCTTCAGTGCACACAAAATTAAAGCAAATATTGTTGTGCTGATTT
AATCAATCAGATTATAGAATATTGTACATATGCACCTCGATAGATTATTTGCAGGGCATGAGTGGATACCATTAATAGTC
TTACTACAAACATGTCTGATTCTATCAATTAAGGGACTAAATTAGCTAGCTAATTCGTGTAAAGCTAGCTAGATGCACAA
ATTCTTCCATTTC-T-TTGCTAGATGATAATGTCTTGTTCCATTAGAACTTTACTTTTGGATGGCCGAACTGTATAACTA
ACTAATGCCGCTATGCCAGCCATGCCTGGCGGAACATATTGCACGTAAAGTACAAAAGCAAATAGTGATGTACTGCTGAT
TTAACTAGTTAAATTGTAGATTATTGTACACATGGATCTCCAAAGATTGTCTGCAGGGCATGAGTGGAGGCCATAAATAG
CCCTTCCACTAGCATGTTTCTTGTTATATATCAAGGACCTAGTTCTGTTAGTTAATTAGTATCACACTCATCATATAGCT
TTTTTCTGAAAAGAAAGGCGAAGCCTCTCTCACCATATATCGAGCTAGTTAACTTGATTGCGTTGATCAAGGGAGGAGAA
TGGATTGGAAACCTATGGTGACGATGCTGGCGGTGGTCACCGTGTTCGCGGTGATGAACACGCTGACGAAGATGGCTTTT
AACGAAGGGATGCACACCACCGTCCTCATCGTCCTCCGCCAGCTCACCGCCACGCTCTTCCTCGCTCCGATCGCCTACTT
CAAAGAGAGGTTTGTGTCAGCACTAATTAATCTA-----------------GAGTAATG-AAGCTTTTATTTTCAAAAAA
CACGCCAATTTCTGTTGTTGAGTTTGCTCATTTCTATGTGGTTTCCATG--TATATATGTAGGAAGACTAGGCCTAAGAT
GACCACAAAGATCTTCGTCTACCTCTTCTTGAGTGCCTTGCTTGGGTAATTAATCTATTTTGTTTAATCATAGAAAGTGT
TGACAGA----------------------GCTTAATTGTAGCAAGAGTAGCAAGTGTTAATCAGTCTAAATCAGTCTTCA
GTTTCATGCGCTAATTAATCCATGGCAATGGCAATGGCATGG--CAGAGCGTCCCTAACCCAGTGGCTCTTCTTCTTTGG
CCTGCGGTACACGACGGCGACGTTCGCGAGCGCCTTCATCAACATGACCCCCATGTTCACCTTCCTGCTGGCGCTGCCCT
TCAAGATCGAGAAGCTCGACGTGGCCACCGGCTCCGGTGCCGCCAAGCTCACCGGCACGGCGGTGGGGCTGGCCGGAGCG
ATTTTGATGGCGCTCTACCAAGGCCCGGCCCTGACGGGGGCGCCGACGACGGACCATCATGCTGCTGCCGGTGCCCATG-
-----GTGGAGGCGCGTGGAGGTGGGCGATCGGGTCGGCGGCGCTGCTGGGCGGCTCGGCGAGCTGGTCGCTGTGGTTTA
TATTACAGTCCAAGATCGGCACCAAGTACCCCGCTCTCTACTCCAGCACGGCGTGGATGTTCCTGCTGAGCACGGCGCAG
ATGGCGGCCGTCGGGGCGGCGACGGAGGCGATGACCCTCCAGGTGTGGCTCCCCGGCACGGCGCTGAAGGCCGTGACGGT
GCTGTTCGTGGGAGTGGTGGGGTCCGGGCTGGGTTTCCTGGCCATGTCGTGGTGCGTGGAGCGGCGCGGGCCCGTGTTCA
CCACGGCGTTCATGCCGCTCATCCAGATGATCGCCGCCGGGATCAACGTGACGGTGCTCCACGAGCAGCTCCACCTCGGG
AGCGTGGTCGGGTCGGCGCTCGTCGTCGTGGGGCTCTACTTGGTCCTCTGGGGCAAGGGCAAGGAGGCGAGCAGCAAACC
CAAGCTGCCTCCTCCGTCCCATTCCAAGCTCGCGTTGGATGAAGAAACAGAGCAT---GGTGATTCACGGATCATGCAGA
GTGTGTGATGAGTTGCTGCGTCAAGGTGATCAAGGTGGAATCATCTCTCGGCAACAAAAGGAGGAGGACATAGTTCGCTA
-----------TTTTCTTCATCTTTTTAATAGAATCAAGTGAACTTTAGATAGGTTACTGGAAATAATTCACGTGGATAA
GTCAAAGTGGATTATTGTTCAAACGGGTAAAGTT-TTTTACTTTTCAATACAAGGCTTTACACT-------CCTCACTTT
A--AATTAACATAGCTCTTGATGACTATATAGTGCAACTACAAAATGGAAGAAAGTAAGGAGATAAACA--AAGTGGTTA
GCTCTCCCGCCCCACGTCGCCTTA--------------------------------------------------------
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------------------------------------
>chr6D_1
CATTTCTGTTGGTAGATGATAATTTCCTTCATTACTTTTGTATGACCGGTCTAGTATGCCAGTCATTCATGGC-------
-TTGGAG------CACACAATTTTTTTGTTCAAATTTGAAAATTTCAGAAGTACGAATTTGAAATATTTTAGAATTGTGT
GAGATAAGAACATAATAATTTGATTATTATAATGTGAAATTGGAGTTCGTATGCACGTATATAAGACAAATGGA--AGAG
AATGAAATATAGGGGCTACACTTCTATAAAATCTGTCAAAGCAATGCACCCTACTAATCTAGT---AAAAAAATCAGGGG
CCGCATCTAAATGGGGTCTGGGGCA--TATCTATTTAGAGTACCTGTTAGATTAGCTCTAATACGAGTCGTGCATGC---
------ATATGGCCCAACACATATTGGTATATTATTCTTCACTGCACAC-AAATTAAAGTAAATATTGTTGTACTGATTT
CGTTAATCAAGTTATAGAATATTGTAC------------------------------------------CATTAATAGTA
TTACTACAAGCATGTCTGATGCTATCAATGAAGGGCCTAAATTAGCTAGCTAATTCCTCTAAAGCTAGCAAGATGAACAA
AATCTTCCATTTC-TGTTGCTAGATGATAATGTCTTGTTTCATTAGAACTT-----TTGGATGGCCCGACTAGATAACTA
----ATGCCACTATGCCAGTCATGCCTGGCCGAACATATTGCACACAAAGTT--AAAGCAAATAGTGATGTGCTGCTGAT
TTAACTAGTTAAATTGTAGAATATTGTAGACATGGATCTCCACAGATTGTCTGCAGGGCATGAGTGGAGGCCATAAATAG
CCCTGCCACTAGTATATCTTTTGCTATAAATCCAGGACCTAGTTTAGTTAGTTAATTAGTATCACACTCATCAAATAGCT
TTTTTCCGAAAAGGAAGACAAAGCCTCTCTCACCATATATCGAGCTAGTAAACTTGATTGTGTTGATCAAGAGAGGAGAA
TGGATTGGAAACCTATGGTGACGATGTTGGCGGTGGTGACCGTGTTCGCGGTGATGAACACGCTGACAAAGATGGCTTTT
AACGAAGGGATGCACACCACCGTCCTCATCGTCCTCCGCCAGCTCACCGCCACGCTCTTCCTCGCCCCGATCGCCTACTT
CAAAGAGAGGTTCGTTTCAGCACTAATTATGTCGTTGCAAATATAGACCAGGAGTAATGAAAGCTTTTATATTTTCACAA
GATACTAGTTTCTGATGTTGAGTTTGCTAATTTGTATGTGGTTTTCATGTATATATATGTAGGAAGACTAGGCCTAAGAT
GACCACAGAGATCTTCGTCTACCTCTTCTTGAGTGCCTTGCTCGGGTAATTAATCTATTTTGCTTAATTACACCAAGTGT
TGGCAGAG--------CTTAATCTCTTTTGCTTAACTATAGCAAGAGTAGCAAGTGTTGATCAGTCTTG----------A
ATTTCATATGCTAATTGATGCATGGCTAT------GGCATGG--CAGAGCGTCACTGACCCAGTGGTTATTCTTCTTTGG
CTTGCGGTACACGACGGCGACGTTCGCGAGCGCCTTCATCAATATGACCCCCATGTTTACCTTCCTGCTGGCGCTCCCCT
TCAAGATCGAGAAGCTCGACGTGGCCACCGGCTCTGGCGCAGCCAAGCTCACGGGCACGGCCGTGGGGCTGGCCGGAGCG
ATTTTGATGGCGCTCTACCAAGGCCCGGCCCTGACGGGGGCGCCGACGACGGACCACCATGCTACTGCCGGTGCCCATG-
-----GTGGTGGTGCGTGGAGGTGGGCGATTGGGTCGGCGGCGCTGCTGGGCGGCTCGGCGAGCTGGTCGCTGTGGTTCA
TACTACAGTCCAAGATCGGCACCAAGTACCCCGCTCTGTACTCCAGCACGGCGTGGATGTTCCTGCTGAGCACCGCGCAG
ATGGCCGCCGTCGGTGCCGCGACGGAGGCGATGACCCTCCAGGTCTGGCTTCCCGGGACGGCGTTGAAGGCCGTGACGGT
GCTGTTCGTGGGGGTGGTGGGGTCCGGGCTGGGGTTCCTGGCCATGTCGTGGTGCGTGGAGCGGCGGGGGCCGGTGTTCA
CCACAGCGTTCATGCCGCTCATCCAGATGATCGCCGCCGGGATCAACGTCACGGTGCTCCACGAGCAGCTCCATCTCGGG
AGCGTGGTCGGGTCGGCGCTGGTGGTCGTGGGGCTCTACTTGGTCCTCTGGGGGAAGAGCAACGAGGCGAGCAGCAAACC
GAAGCTGCCTCCTCCATCACATTCCAAGCTCGCGTTGGCTGAAGAAACAGAGCAT---GGTGATTCACGGATCATGCAGA
GTGTGTGATGAGCCGCTGCGTCATGGTGATTAAGGTGCAACTGTCTCTCGGCACCAAAAGGAGGAGAACATAGTTCGCTA
TTTTCTTCCATTTTTCTTCATCTTTCTACTAGAATCAAGTGAACTTTAGATAGGTTATTGGAAATAATTCACGCGGATTA
GTCCAAGTGGATTATTGTTCGAACGGGTAAAGTT-TTTTACTTTTCAATACAAGGCTTTACATT-------CCTCACTTT
A--AATTAACAAAGCTCTTGACAACTATA--GTGCAACTACAAAGTGGAAAAAAGCAAGCAGGAGATAAACAAGTGGTTA
GCTCTCCCACCCCGCATCGCCTTA--------------------------------------------------------
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>chr6A_239
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-------TATAGGGGCTACACTTCTGTGAAATTTGTCCAAGCAATGCACCCTAAAAATCCTTGAAAAAGTATTA---GGG
CTGCATCTAAAATGGGTTTAGGCAT--TATCTTTTTAGATTATCTCTTAGAGTTGCTCTAATGCTAGTCGTGCATGC---
------ATATGGGCCAACACTGTGTGATATAGCATTCCTCAGCGCACAC-AAATTAAAGCAAATATTGCTGTAC--ATTT
AACCATTAAAGTTATAGAATATTGTACACATGCACATCCATAGATTATTTGCAGGGCATGAGTTGATACCTTTAATAGTC
TTACTACAAACATGTCTGATGCTATCATTTAAGGAACTAAATTAGCTAGCTAATTCGTGTAAAGCTAGCTAGATGCACAA
ATTCTTCCATTTA-TAATGCTAGATGATAATGTCTTGTTCCATTAGAACTT-----TTGGATGGCCCGACTAGATAACTA
----ATGCCACTATACCAGTCATGCCTGGCCGAACATATTGCACACAAAGTT--AAAGCAAATAGTGATGTACTGCTGAT
TTAACTAGTTAAATTGTAGAATATTGTACACATGGATCTCCACGGATTGTCTGCAGGGCATGAGTGGAGGCCATAAATAG
CCTTGCCACTAGTATGTCTTTTGCTATAAATCCAGGACCTAGTTTCGTTAGTTAATTAGTATCACACTCATCATATAGCT
TTTTTCCGAAAAGGAAGACAAAGCCCCTCTCACCATACATCGAGCTAGTGAACTTGATTGTGTTGATCAAGAGAGGAGAA
TGGATTGGAAGCCTATAGTGACGATGTTGGCGGTGGTGACCGTGTTCGCGGTGATGAACACGCTGACAAAGATGGCTTTT
AACGAAGGGATGCACACCACCGTCCTCATCGTCCTCCGCCAGCTCACCGCCACGCTCTTCCTCGCCCCGATCGCCTACTT
CAAAGAGAGGTTCGTGTCAGCACTAATTATGTCGTTGCAAATATAGACCAGGAGTAATGAAAGCTTTTATATTTTCACAA
GATACTAGTTTCTGATGTTGAGTTTGCTAATTTATGTGTGGTTTTCATG--TATATATGTAGGAAGACTAGGCCTAAGAT
GACCACAGAGATCTTCGTCTACCTCTTCTTGAGTGCCTTGCTCGGGTAATTAATTTATTTTGCTTAATTACACCAAATGT
TGACAGAG--------CTTAATTTCTTTTGCTTAACTATAGCAAGAGTAACAAGTGCGGATCAGTCATA----------A
ATTTCGTATGCTAATTGATGCATGGCAAT------GGCATGG--CAGAGCGTCGCTGACCCAGTGGCTCTTCTTCTTCGG
CCTGCGGTACACGACGGCCACGTTCGCGAGCGCCTTCATCAATATGACCCCCATGTTCACCTTCCTGCTGGCGCTGCCCT
TCAAGATCGAGAAGCTCGACGTGACCACCGGCTCCGGCGCCGCCAAGCTCACCGGCACGGCCGTGGGGCTGGCCGGAGCG
ATTTTGATGGCGCTCTACCAAGGCCCGGCCCTGACGGGGACGCGGACCACAGACCACCACGCCGCCGCGGCTGCTGCCC-
-----ACGGTGGCGCGTGGAGGTGGGCGATCGGGTCGGCGGCGCTGCTGGGCGGCTCGGCGAGCTGGTCGCTGTGGTTCA
TACTACAGTCCAAGATCGGCACCAAGTACCCCGCTCTGTACTCCAGCACGGCGTGGATGTTCCTGCTGAGCACCGCGCAG
ATGGCCGCCGTCGGGGCCGCGACGGAGGCGATGACCCTCCAGGTGTGGCTCCCCGGCACGGCGCTGAAGGCCGTGACGGT
GCTGTTCGTGGGGGTGGTGGGGTCCGGGCTGGGGTTCCTGGCCATGTCGTGGTGCGTGGAGCGGCGGGGGCCCGTGTTCA
CCACGGCGTTCATGCCGCTCATCCAGATGATCGCCGCCGGGATCAACGTCACGGTGCTCCGCGAGCAGCTCCACCTCGGG
AGCGTGGTCGGGTCGGTGCTGGTCGTCGTGGGGCTCTACTTGGTCCTCTGGGGGAAGAGCAACGAGGCGAGCAGCAAACC
CACGCTGCCTCCTCCGTCACATTCCAAGCTCGCGTTGGATGAAGAAACAGAGCAT---GGTCATTCACGGATCATGCAGA
GCGTGTGACGAGCCGCTGCGTCAAGGTGATTAAGGTGCAACTGTCTTTCGGCACCCAAAGGAGGAGGACATAGTTCGCTA
TTTTCTTCCATTTTTCTTCATCTTTCTACTAGAATCAAGTGAACTATAGATAGGTTATTGGAAATAATTCACGTGGATTA
GTCAAAGTGGATTATAGTTCGAACGGGTAAAGTTTTTTTACTTTTCAGTACAAGGCTTTACACT-------CCTCACTTT
A--ATTTAACAAAGCTCTTGACGACTATA--GTGCAACTACAAAGTGG-AAAAAGCAAGCAGGAGATAAACAAGTGGTTA
GCTCTCCCGCCCCGCGTCGCCTTA--------------------------------------------------------
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>chr1B_1246
TTTAGCTAATT---------------------------------------------------------------------
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------------------------------TCTATGTATGGTTTCCATG--TATATATGCAGGAAGAATAGACCTAAGCT
TACCATCGAGATCTTTGTCTACCTCTTCATCAGTGCCTTGCTCGGGTAATTAATCTCTTTTGCTTAATTATAAAATGTCT
TGATTAATTAATCTTACCTCATTTTTTTTGCATTACTGTA-----AATAACCAGCGCTGATCAGTCTTAATTTCTCTCCA
ATTTCATAAGCTAATTGATGCATGCATGCCA-------ATGG--CAGAGCCTCACTGATCCGGTGGCTCTTTTTCCTGGG
CTTACCGTACACTACGGCAACGTTCGCAAGCGCGTTCAACAACACAACCCCCATGTTCACCTTTATCCTTGCGCTCGCCT
TCAAGGTCGAGAAACTCGACGTGGCCAGCCGCCCTGGCGCCGCCAAGCTCACCGGCACGGCCGTGGGGCTGGCCGGAGCG
ACGGTGTTGGCACTCTACCAAGGCCCAACCCTGATAGGGGCGCCGTCGGCGTACCACCTA---GCCGCTGCTGCGACCC-
-----ACGGGGATGCACGAAGGTGGGCTCTGGGGTCGGTGGCGCTGCTGGGCTTCTCGGCGAGCTGGTCGTTGTGGTTCA
TCCTACAGTCCAAGATCGGGACAAAGTACCCGGAACTCTACTCTAGCACAACGTCGATGTTCTTGCTCAGCTTCGTCCAG
ATGGCCATTGTCGGGGCTGCCACCGAGAAGATGACCATGAAAGTCTGGGTCCCCTGCACGGTCCTCCAGGGCATCACCGT
GCTCTTCGCGGGTATCGGGGTGTCCAGGTTGGGGTTCCTGGCCATGTCATGGTGCGTTGAGCGGCGAGGGCCTGTGTTCA
CCACCGCCTTCATGCCGCTTATCCAGATTGTCACCGCCGGGATCGACGTCTCCGTCCTCTACGAGCAACTCCACCTAGGA
AGTGTGGTGGGGTCGGCGATCGTGGTCGTGGGGCTCTACTTCCTC--CTGGGGAAAGAGCAATGAGGCAAGGACCATTAG
TGGAA---CTCCGACGTCACATTCCAAGGTTGAATTGGATGAAGAAACAGAGGAT-------------------------
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>chr5A_1440
--------------------------------------------------------------------------------
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-TTTCATATGCTAATTGATGCATGCATCGCA-------ATTGCACAGAGCCTCTCTGATCCAGTGGCTCTTCTTCCTTGG
CCTGCGGTACACGACCGCCACGTTCGCGAGCGCCTTCAACAACACGACCCCCATGTTCACTTTCCTCCTCGCACTCGCCT
TCAAGGTTGAGAAGATCGATGTTGCCAGCCGCTCCGGCGCAGCGAAGCTCACCGGCACGGCCGTGGGGCTGGCCGGAGCG
GCGGTGCTGGCACTCTACCATGGCCCGACCCTGATGGGAGCGCCGTCGGGGGACCACATG---GACTCCACAGCCACCC-
-----ACGGCGGTGCGCGGAGGTGGGCGGTGGGCTCGGTGGCGCTGCTGGGCTTCTCGGCGAGCTGGTCGTTGTGGTTCA
TCCTACAGTCCAAGATCGGGACAAAGTACCCGGCGCTCTACTCCGGCACAGCGTGGATGTTCGTGCTCAGCTTCATCCAG
ATGGCCACAGTCGGGGCTGCCACCGAGAAGATGAACTTGCAGATCTGGGTCCCACGCACGGCGCTCCAGGCTGTGACCGT
GGTATTTGCTGGCGTGGGGTCGTCCGGGCTGGGGTTCCTGGTCATGTCATGGTGTGTGGAGCGGCGAGGGCCTGTGTTCA
CCACCGCCTTCATGCCGCTAATCCAGATCGTCACGGCCGGGCTCGATGTCACCGTCCTCCATGAGCAGCTCCACCTCGGG
AGCGTTGTCGGGTCGGCGGTCGTGGTCGTGGGGCTCTACTTGGTCCTGTGGGGAAAGAGCAACGAGGCGAGCATCGGATC
CAA-----------------------------------------------------------------------------
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>chr5D_1448
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---------GCTAATTGATGCATGCATGGCA-------ATTGCACAGAGCCTCTCTGATCCAGTGGCTCTTCTTCCTCGG
CCTGCGGTACACGACGGCCACGTTCGCGAGCGCGTTCAACAACACGACCCCCATGTTTACCTTCCTCCTCGCACTCGCCT
TCAAGGTCGAGAAGATCGATGTCGCCAGCCGATCCGGCGTCGCCAAGCTCACCGGCACGGCCGTGGGGCTGGCCGGAGCG
ACGGTGCTGGCATTCTACCAAGGGCCGACACTGATGGGGGTGGCGTCGGGGGACCACCTG---GCCGCCGGTTCCACCCA
TAGAGACGGCGGTGCGCGGAGGTGGGCGGTGGGCTCGGTGGCGCTGCTGGGCTTCTCGGCGAGCTGGTCGTTGTGGTTCA
TCCTGCAGTCCAAGATCGGGACAAAGTACCCGGCGCTCTACTCCGGTACAGCGTGGATGTTCGTGCTCAGCTTCATCCAG
ATGGCCACCGTCGGGGCTGCCACCGAGAAGATGAGCTTGCAGATCTGGGTCCCACGCACGGCGCTCCAGGCCGTGACCGT
GGTATTTGCTGGCGTGGGGTCGTCCGGGCTGGGGTTCCTGGTCATGTCATGGTGTGTGGAGCGGCGAGGGCCTGTGTTCA
CCACCGCCTTCATGCCGCTAATCCAGATCGTCACCGCCGGGCTCGATGTCAGCGTCCTCCATGAGCAGCTCCACCTCGGG
AGCGTTGTCGGGTCGGCGGTCGTGGTCATGGGGCTCTACTTGGTCCTGTGGGGAAAGAGCAACGAGGCGAGCATCGGATC
CAA-----------------------------------------------------------------------------
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------------------------------------
>chr5B_1472
--------------------------------------------------------------------------------
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-------------------------ATGGCA-------ATTG--CAGAGCCTCTCTGATCCAGTGGCTCTTTTTCCTGGG
CCTGAGGTACACGACGGCCACGTTCGCGAGCGCCTTCAACAACACGACTCCCATGTTCACCTTCCTCCTCGCACTGGCCT
TCAAGGTCGAGAAGATCGATGCCGCCAGCCGCTCCGGTGCAGCCAAGCTCACCGGCACGGCCGTGGGGCTGGCCGGAGCG
ACGGTGCTGGCACTCTACCATGGCCCGACCCTGGTGGGGGCGCCGTCGGGGGACCACCTA---GCCGCCGCTGCCACCC-
-----ACGGCGGTGCGCGGAGGTGGGCGGTGGGCTCGGTGGCGTTGCTGGGCTTCTCGGCAAGCTGGTCGCTGTGGTTCA
TCCTGCAGTCCAAGATCGGGACAAAGTACCCGGCGCTCTACTCCGGCACGGCGTGGATGTTCCTGCTCAGCTTCTTCCAG
ATGGCCGCCGTCGGGGCTGCCACCGAGAAGATGAGCTTGCTGGTCTGGGTTCCCCGCACGGCGCTCCAGGCCGTCACCGT
GGTGTTTGCTGGCGTGGGGTCGTCCGGGCTGGGGTTCCTGGCCATGTCATGGTGTGTGGAGCGGCGAGGGCCGGTGTTCA
CCACGGCCTTCATGCCGCTGATCCAGATCGTCACCGCCGGGATCGATGTCGCCGTCCTCCACGAGCAGCTCCACCTCGGG
AGTGTCGTCGGGTCGGCGGTCGTGGTCGTGGGGCTCTACTTGGTCCTGTGGGGAAAGAGCAACGAGGCGAGCATCGGATC
CAAACTCCCTCCTCCATCACTTTCCAAGCCCG------------------------------------------------
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>chr6B_2391
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-----------TTTTCTTCATCTTTTTACTAGAATCAAGTGAACTTTACATAGGTTATTGGAAATAATTCACGTGGATAA
GTCAAAGTGGATTATTGTTCGAACGGGTAAAGT-TTTTTACTTTTCAATACAAGGCTTTACACT-------CCTCACTTT
ATAAATTAACAAAGCTCTTGAAGACTATA--GTGCAACTACAAAGTGGAAAAAGGCAAGCAGGAGATAAACATGTGGTTA
GCTCTCCCGCCCCACGTCGCCTTAGACTATTTAACCAAAAACTATCCCATTTTATGAAAACGTGTCCAAAAACTACC---
----------------------------ACTTTACAAATTTATGCAAAAAACCACCA-TTTTTTTACTAACCCGTAGCAA
AAACCTATCACTTTCAGAAAATGGCCAGTTTACAAGATTTAAACACGTTTATGACAAAGTAGGGCTCAC-CCATCAGGGC
TGACGTGGAAAGTCAACAAACGCACGAGATGACGGTGAGCACGCCAGGAGGCTAGCATGCGGCTGCGATCCGCACA-CCG
GCGGCAGCACGTGGTGGCGACGCCCCGATCGGGCACTCCGACGGACGCACGCTGCTCGACCGCAGGCGGCCACCTAGCGC
TAGCTTGCTAGCACCAACGAGCAAGTATGGATGGCTTGCCGACCAGCCAGCGCGAGCACGCATGCATGCGGCTGCGCAAC
CAGCGCGAGCACGTACGCATGGCTTGGCGACCGGCCAGCGCGAGCATGCGGCTCGGCAACCAGCGCGTGCTCGCGGCCTG
CGCGCGGCTCGACGGCTGCCTGAGCACCCAGGGGACGGCGGCCG--------CCACACTTTTGCACGCGACAGCTACGGC
GGCGAGCTCGGATGCCTGCCCGCACGCGACCTCAACGGCGGCCAGCCC--------------------------------
------------------------------------
>chr7D_2639
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------------------------GAGTATTTAG-------------------------------CCAAAAACTACCACA
TTTCATGAAAAGGTGTCCAGAAACTACCACTCTACAAATTCGTGCCAAAAACTAACA--TTTTTCACTAACCCGTAGCAA
AAAACTACCATTTCCGAAAAATGACCAATTTAGAAGATTTAAACACGTTTATGACAAGTGGGGCC---CACCGTCAGGGC
TGACGTGGCAAGTCAACAAGCGCACGAGATGATGGTGAGCACGCCCGGCGGCCAGCATGCGGCCGCGACCCGCACACCCG
GCGGGAGCATGCAGTGGGGACGCCCAGATCGGGCACTCCGACGGACGCACGCTGCTCGACCGCACGCGGCCACCCAACGC
TTGCTTGCTAGCACCAACAAGCAAGTATGCATGGCTTGCCGACCAGCCAGCGCGAGCATGCATGCATGCGGCTGCGCAAC
CAGCGCGAGCACGTACGCACGGCTTGGCGACCGGCCATCGCTAGCATGCGGCTCGGCGACCAGCGCGTGCTCGCGGCCTG
CGCGCGGCTCGACGGCTGCGCGAGCACCCACGGGACGGCTGCGGCGGCCCGCCCGCACTTCTGCACGCGACAGATACGAC
GGCGAGCTCGGATGCTGGCCCGCACGCGACCGCAAC--------------------------------------------
------------------------------------
>chr1B_2639
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------------------------GAGTATTTAA-------------------------------CCAAAAACTACCACA
TTTCATGAAAACGTGTCCAGAAACTACTACTTTACAAATTTATGCCAAAAACAACCA-TTTTTTTACTAACTCGTAGCAA
ACAATTACCACTTTCGG-AAATGACCAGTTTAGAAG-----AACACCTTTATGACAAGTGGGGCC---CGCAGTCAGGGC
TGACGTGGCAAGTCAACAAGCGCACGAGATGACGGTGAGCACGCCCGGCGGGCAGCATGCGGACGCGACCCACA------
-------CACCCGGTGGCGATGCCCAGATCGGGCACTCCGACGGACCCACACTGCTCGACCGCACACGGCCACCCAGCGC
TAGCTTGCTAGCACCAACGAGCAAGTATGCATGGCTTGGCGACCAGCCAGCGT---------------------------
------GAGCACGTACGCACGACTTGGCGACCAGCCAGCGCGAGCATGCGGCTCGGCGACCAGCGCGTGCTCGCGGCTTG
TGCGCGGTTCGACGACTGCGCGAGCACCCACGGGATGGCTGCGGTGGCCCGCCCGCACTTCTGCACGCGACAGCTACGGC
GGCGAGCTCAGATGCCGGCCCGCACGCGACCGCAAC--------------------------------------------
------------------------------------
>chr6B_2680
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-----------------------------------------------------------------CCAAAAACTACCACA
TTTCATGAAAACGTATCCAGAAACTAC----------------------------CA--TTTTTTACTAACCCATAGCAA
AAAACTACCACTTTCAAAAAATGACCAGTTTAAAAAATTTAAACACGTTCATGACAAGT-GGGGC---CACCGTCAGGGC
TGACATGGCAAGTCAACAAACGCACGAGATGACGGTGAGCACGCCCGGCCGCCA---TGCGGCCACGACCCACACACCCG
GCGGCAGCACGCGGTGGCGACGCCCAGATCGGGCACTCCGACGGACGCAGGCTGCTCGACCGCACGCGGCCACCCAGCGC
TAGCTTGCTAGCACCAACAAGCAAGTATGCATGGCTTGCCGACCAGC-AGCGCGAGCACGCATGCATGCGGCTGCGCAAC
CAGCACGAGCACGTACGCACGGCTTGGCGACCGGCCAGCGCGGGCATGTGG-TCGGCGACCAGCGTGTGCTCGCGGCCTG
CGCGCGGCTCGACGGCTGCGCGAGCACCCACGAGACGGCTGCGGCGGCCCGCCCGCACTTCTGCACGCGACAGCTACGAC
CGCGAGCTCGGATGCCGGCCCGCACGCGACTGCAACGGCGGCCAGCCC--------------------------------
------------------------------------
>SNPs
-----------------------------------------------------------S------------SSSSSSSS
S------------------S------S----------S------------------------------------------
SS--------------S-----------S----------------S---------------------S---S--SS----
----------------S-------------------------------------------------------S-S-----
-----S-----------------S--SS----------------------------S-----------------------
-------------------------------S---------------------------------S--S-----------
------------S-------S-------------------------S-----------------------S---------
-S--------------S--------S--S-----S---S-------S--S----S-S----------S---S-----S-S
-------------S--------S---------S------------SS--------------S------S-------S---
-------------------------S----------S------------S------------------------------
-----------------------------S--------------------------------------------------
-----------S------------------------S-------------------------------------------
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---------------------S-----------------------------------------------------S----
----------S-----S---------------------------------------------------------------
-----------------------------------------------------SS-------------------------
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---------------------------------------------------------S----------------------
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----S--------------S----------------------S---S--------SSS----------------------
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-----S------S-------------------S-------------------------------SSSSSSS---------
-----------------------------------------------------------------------------S--
----------------------------------S--------S--------S--S-----S------S------S---S
--SS-SSSSS-SS------S-------------------------------------S----------------------
----S--------------------S--------------------------S---------------------------
------S----------------------S--------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------S----------------S----
-----S-------S-----------------S-------------------------SSSSS-S----------------
------------------------------S---------------------SS--------S--------------S--
S-----------------------------------SSS----S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_717
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---------------------------------------------------------TGGAGGGCCGGTCTAGATAG---
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>reverse_2376
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-------------------------------------------------------GGCGGTGATTCACGGATCAT-----
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>forward_2340
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CAAGTTGCCTCCTCCGTCAA------------------------------------------------------------
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>reverse_3436
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---------------------------------------------------------------------------CAGGG
CCCCCGAAATCTAAG---------------------
