>input_sequence_54595
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---------------------------------------------ATGGGTGTAAGTCG------GGAGGTGGAGGTGGT
GGAATCATGCATGGTGACGCCCATCGAGCAGACGCCAAGCCATGGCCTCTGGCTCTCCCCGATCGACCTCGCAATTGTCA
GTAGAGGCCTCATCCCTACCGTCTACTTCTACAGCTCCAGCTCCAGCTCGGGCGTCGTCGATGACTTCTTCGACGTGACC
AGGCTGAAGCTGGCGTTGGCCAAGGCTCTCGTGGCCTTCTACCCTCTCGCCGGCCGTCTCAGCGTGCATGGCGACGGTCG
GGCGGAGATCGACTGCGCCGGCCAGGGCGTGCTCTTCGCCGTCGCTCGCTCGGACCTCGCCGTCGCCGACCTCGTCGATT
CCCAGCCGTCGCCGGAACTAAGGAGGCTCTTTGCTCCCCGCGTTGAGGACTTGCCGTCCATCATGTGCGCCATTCAGGTG
ACCTTCATGGGATGCGGTGGGGTGGTCTTGGGAACGGCGCTGCACCACGCCGCCGTCGACGCCCCAAGCGTGTTCCACTT
CTTC-CGGACATGGTCCGCCTTCTCCAGAGACCGTGATGGACATGTAGCCGGGCCCGGGGGTGCGGCGCTCGAGCTCCCG
TGCCACGACCGTACCCTCCTCCGCGCGCGCACACCGCCCATGGTCCACCCCGACGCTTTCACCGTGTTCT---GCCCGAA
GCTAAGCC---------TA---------TCCGAGACGTCGGGCATCGGCCCCATCGTTAGCGAGATTTTCGCCGTCTCCA
AGGACCAGGTTGCCGCTCTCAAGCGTGCATGCACCAGCAGAGGCGA------CGGTGGCCGAGTGAGCACGTTCGTCGCC
GTGAGCGCCCACGTGTGGCGGTCCATGTGCGCCGCGCGCCGGCTGCCACCGGACGCCACGACGCGGCTCACCTTCCCGGC
CAACGTCCGGCGCGTCCTGAGGCCGCCGCTGCCGGCCTGCTACTTCGGGAACGCGATCATCACCCTGGGCACCGCCGGCA
AGGTCCGGGACATAGGGTCGGAGGAGCTGGCCTCCGTGGCCGGCCGGATCAATGGCGTCGTCCGCCGAATGGACGACGAG
CTCGTGCGCTCGGCGATCGACTACTTGGAGATGAACGGC---GGCAAGCAGCCGGCC---GGCACCCTGCCGGAGACGGA
GCTGAGGGTGTTCAGCTGGCTAGGCATGCCGATGTACGACGCGGATTTCGGGTGGGGGAAGCCGCTCGCGACGCACCGCG
CGTTGGAGGAGCGCGGCGCGATCGTCTACCTCATGGATGGCCTCGGC------GGCGGCGTGCGCATACTCGTGTCTGCG
GAGGCTGCTGTTCTCAACGACTTCCAGCGCCTGCTATATGCCATCATCTAG-----------------------------
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------------------------------------
>chr3B_1_TraesCS3B01G485500
GAGATGATTAAATTAGAAAGGAAAAAGGAAAAAAGACAACCGTAGGATGAAGTGGGAGCACGGATGAAAGTATGGGGAGA
GAGCAGGCAAGCCGGATCCTACATAGCCTGATTACCTATGACGTGCATGCAGAATTGCAGACGCTCAGATTTGGGGCCAA
ATCACTGTTTTGACCCTTGATGAGATTATCACAAAATAAATCCTTCCGAAAAGTTTGGCAGACCCATTTCCACTGACGTT
CAATCTTTTTTTTTCTTTTGAGACGCCACCGACGTTCAATCAATCCTATGACGACGTTGCAGCTGCACTGCTTAGGCCTT
GTACAATGGGAGGTGCTTAGGGGAGGTGCTTAGAGAAATAAATCAGGCTTTTTTTAAGCACCGGTGCTTATTTGTACAAG
ATAGACGCTTAACTAAGCGTCTCTCCTGTAGAAATAGGCACCGGTGCTTCAGAAAAATCCGGTTTATTTTTCTAAGCATC
TCTCAAGCACCTCCCATTGTACAAGGCCTTAAAGGCCAAGTCCTTGGTGTTGCAGCCCTGGTCCACCAATTTGCATGTTG
CTACCTACTAGTCCTTGGTGTTGCAGCCCTGACCACCAAATTTGCAGCATGCGCTAGCGCTTCTAGCGCGTGCCCAACTA
GGTAGCTCGGGGTTTACTTTCACCGAGACAGTTCCAGCGAGAGCAACCACTAAAACCTGGCATGTGGCGGAAGGAGATTG
AGGAGATCAGATCAGAGTTCAGGTCAATGCATGTTCTCTAAAAATGATCGAGGAGATCAGGGGTCGTGATAGCCACTTGG
ACTTCATGGTGACGGGAGCCATACCTGATCTTGGTGATGATACGGTAGAGATCGTCGTCTTTGATTTTGATCAGGAGACG
TGATAGCTAGCCACTTGGACTTCATGGTGATCGATCGTCTATAAAATGTGGAGAAGAAGCGTGAGAGCAAGAGTGCAACA
CCTCAGCCTCTTCCTCTTCTCACTCGACCTG-----AGAAGGAAAATGGGTGTAAGTCG------GGAGGTGGAGGTGGT
GGAATCATGCATGGTGACGCCCATCGAGCAGACGCCAAGCCATGGCCTCTGGCTCTCCCCGATCGACCTCGCAATTGTCA
GTAGAGGCCTCATCCCTACCGTCTACTTCTACAGCTCCAGCTCCAGCTCGGGCGTCGTCGATGACTTCTTCGACGTGACC
AGGCTGAAGCTGGCGTTGGCCAAGGCTCTCGTGGCCTTCTACCCTCTCGCCGGCCGTCTCAGCGTGCATGGCGACGGTCG
GGCGGAGATCGACTGCGCCGGCCAGGGCGTGCTCTTCGCCGTCGCTCGCTCGGACCTCGCCGTCGCCGACCTCGTCGATT
CCCAGCCGTCGCCGGAACTAAGGAGGCTCTTTGCTCCCCGCGTTGAGGACTTGCCGTCCATCATGTGCGCCATTCAGGTG
ACCTTCATGGGATGCGGTGGGGTGGTCTTGGGAACGGCGCTGCACCACGCCGCCGTCGACGCCCCAAGCGTGTTCCACTT
CTTC-CGGACATGGTCCGCCTTCTCCAGAGACCGTGATGGACATGTAGCCGGGCCCGGGGGTGCGGCGCTCGAGCTCCCG
TGCCACGACCGTACCCTCCTCCGCGCGCGCACACCGCCCATGGTCCACCCCGACGCTTTCACCGTGTTCT---GCCCGAA
GCTAAGCC---------TA---------TCCGAGACGTCGGGCATCGGCCCCATCGTTAGCGAGATTTTCGCCGTCTCCA
AGGACCAGGTTGCCGCTCTCAAGCGTGCATGCACCAGCAGAGGCGA------CGGTGGCCGAGTGAGCACGTTCGTCGCC
GTGAGCGCCCACGTGTGGCGGTCCATGTGCGCCGCGCGCCGGCTGCCACCGGACGCCACGACGCGGCTCACCTTCCCGGC
CAACGTCCGGCGCGTCCTGAGGCCGCCGCTGCCGGCCTGCTACTTCGGGAACGCGATCATCACCCTGGGCACCGCCGGCA
AGGTCCGGGACATAGGGTCGGAGGAGCTGGCCTCCGTGGCCGGCCGGATCAATGGCGTCGTCCGCCGAATGGACGACGAG
CTCGTGCGCTCGGCGATCGACTACTTGGAGATGAACGGC---GGCAAGCAGCCGGCC---GGCACCCTGCCGGAGACGGA
GCTGAGGGTGTTCAGCTGGCTAGGCATGCCGATGTACGACGCGGATTTCGGGTGGGGGAAGCCGCTCGCGACGCACCGCG
CGTTGGAGGAGCGCGGCGCGATCGTCTACCTCATGGATGGCCTCGGC------GGCGGCGTGCGCATACTCGTGTCTGCG
GAGGCTGCTGTTCTCAACGACTTCCAGCGCCTGCTATATGCCATCATCTAGTTCGGAAACCTCCCGTCGATCGTATGCAC
TATCGTGCATAGTAGAGCTGAGTAAAAAAAAAAACCCAGCTGATAGGCTTTCGCTATGTACCATTATCTATCTTTTTCTC
A---TTTTTTTTTCTTTTGGGAAACATTATTCATCTTCTTTATTCGGGAATGTACCACTATATATCAATTATATCGCCTC
GCAAAAAATAT--ATATATCAATTATATCATTATTGTGACAGTTAAGATTTACGTAAGAATATTTTG-AAGTATAAATTT
ATTGTGTGATTCCGATTCAAAGAAATGTTC-TTTGCTAAACACAGCAGACGAGGATTAAAGTTTTAAATTTTAATCCCTC
TTTCCTCACTCTATTAATCTTCATACCTAGTAAGGTGTGTGTGTACGAAAGGAAGTACAAATCTAGCTAGTTAAGCTAGT
TCAATGGTTAAGTACCCAACCAAATAATCAAATGCTTGCTGGTGACTACCTGTACTCGAGTGAGACGGTAGCGGGCAAAT
TGAACTTGAAAAAAAAAAATCCCCTCCCATGTCGCTCCCGTGAGGCGACGGGGAGGGCGCCCTTAGATCTTCGCCGCAAT
TCTC---CCTCCTCCTCCCTCGCCACCACCAGGGGGCGCTGCCGGGCAAAGCGTGATTGGCATCGGCGACGGCTGGGCCT
GGA------------CATTCTCTCGCACGTGGGGGCGGCGCGGGCCGGCTTCCCCGTGGCACGGCGCGTCGCCGCGGTGC
TCTGGAGCAGCGGCGGCATACAAGAAAGGTTGCAGAGCGATGGGCAGCTTGGGTTTATATAATATATTTAGGGTATTCAA
TGCATTTTCAGC--TTTAATTGACATAAATCCAATTTGTAACTGAATGTGCATTAATAAAA-GCACAAATATGGTGAAAA
CATACCATTAAAGTTCTTTATGATCTTTATGCTAATCTTACAAAATCAACTGAAAATGTACTCCCTTCGTCCCAAAATTT
TTGTCTTAGATTTGTCTGCATACGGATGTATCAAGT
>chr3D_754
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---------------------------------TTCCCTAAAAATGATCGAGGAGATCAGGAGACGGGATAGCCACCTGG
AGTTGATGGTGAT-GGAGCCAAACCTGATCTTGG---TGATACGGTAGAGATCGTCGTCTGTC--TTTGATCAGGAGACG
TGATAGC----CACTTGGACTTGATCT-----GATCGTCTTTAAAA---GG---AGAAGCGTGAGAGCAAGAGCACTACA
CCTCAGTCTTTTCCTCTTCTCACTCGACCAG-----AGAAGGAAAATGGGTGTACGTCGTG---AGGAGGTGGAGGTGGT
GGAGTCGTGCATGGTGCCGCCCAGCGAGCAGACACCTAGCCATGGCCTCTGGCTCTCCCCACTCGACCTCACAATGGCCA
ATACAGGCCACACCCCAACCGTCTACTTCTACAGCTCCAGCTCCA------GCGTCGTCGACGACGTCTTCGACGTGACC
CGGCTGAAGGTTGCATGGGCCAAGGCTCTCGTGGCCTTCCACCCTCTAGCCGGCCGTGTCAGCGTGGACGGCGACGGTCG
GGCAGAGATCGACTGCGCCGGCCAGGGCGCGCTCTTCGTCGTCGCTCGCTCGGACCTCGCCGTCAAGGGCTTCGTCCACT
TCAAGCTGTCGCCGGAACTAAGGAGGCTCTTTGTTCCCCGCGTTGAGGACTCGCCGTCCATCATGTGCGCC---------
---TTCATGGGATGCGGTGGGGTGGCTCTGGGGACGGCTCTTCACCACGCCGCCATCGACGCTGTAAGCGCGGTCCACTT
CTTTACAGACGTGGTCCGCCTTCTCCAGAGACGGTGATAGA------------GCCGGGGGGCCGGCGCTCGAGCTCCCG
TGCCACGACCACACCCTCCTCCGCGTGCGCACACCACCTGTCGTCCGCCCCGACGCTCTCACCGTGTTCT---GGCCCAA
GCTAAGCC---------TA---------TCCGAGCCGTCCGT------CCCCGTCGCCAGCGAGATCTTCGTCTTCTCCG
AGGGCCATGTCGCAGCTCTGAAGCGTGCCTGCA---------GCGG------CGGTGGCAGCGTGAGCACGTTCAGCGCC
GTGAGCGCCCACGTGTGGCGGTCCCTATGCGCCGCGAGCCGGCTGCCGCCGGACGCGACGACGCGCCTCAGCTTCCCGGC
CAACGTCCGGCCGGTCCTGAGGCCGCCGCTGCCGGGGCGCTACTTTGGGAACGGGATCATCAACATGGGCACCGCCGGCA
AGGTGCGCGACATCGGATCGGGGGAGCTGGCATCCGTTGCCGGTCGGATCGAAGGCGCCGTCCGCCGGATGGACGACGAG
CTGGTGCGTTCGGTGATTGATTACTTGGAGATGAACGGC---GAGCAGCAGCCGGGCCGTGGCAGCCTACCGGAGACCGA
GCTTAGGGTGGTCAGCTGGCTGGGAATGCCGGCTC---ACGCGGATTTCGGCTGGG------------------------
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------------------------------------
>chr3B_919
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--------------------------------------CTATAAAAGGGGG---AGAAGCGTGAGAGCAACAACCCAACA
CCTGAGTCTCTTCCTCTTCTCACTCGACCCGGGCGCATAAGGAAAATGGATGTACACCG------GGAGGTGGAGGTGGT
GGAGTCGTGCATGGTGACGCCCAGCAAGGACACGCCTAGCCATGGCCTCTGGCTCTCACCACTCGACCTCAACATGGTCA
ATAGAGGCCACACCCCTACCGTCTACTTCTACAGCTCCAGCTCC------GGCGTCGTCGACGACTTCTTCGACGTGACC
AGGCTGAAGGTGGCGTTGGCCAAGGCTCTCGTGGCCTTCTACCCTCTCGCCGGCCGCCTCAGCGTGGACGGCGACGGTCG
GGCGGAGATCAACTGCGCCGGCCAGGGCGTGCTCTTCGTCGTCGCACGCTCGGACCTCACCGTCAACAGCTTCGTCGACT
TCCAGCCGTCTCCCGAGCTGAGGAGGCTCTTTGTCCCCCGCGTCGAGGACCCGCCGTCCATCATGTGCGCCATTCAGGTG
ACCTTCATGAGATGCGGCGGGGTGACCATGGGGACGGCGCTGCACCACACCGCCATCGACGCTGTAAGCGCAGCCCACTT
CTTC-CAGACGTGGTCCGCCTTCTCCAGAGACGGTGATGGA------------GCCAGCGGGGTGGCGTTCGAGCTCCCG
TGCCACGACCGCACCCTCCTCCGCGCGCGCTCACCGCCCGTCGTCCACCCCGACGCTCTCACCGTGCTAT---GCCCGAA
GCTAAGCC---------AA---------TCCGAGCGGTCGGC------CCCCGCGGTCAACGAGATCTTCCTCGTCTCGA
GCGACCAGGTGGCCGCTCTGAAGCGCGCCTGCGCCGGCAGCGGCGATGGTGGCGGTGGCCGCGTGAGCACGTTCTGCGCG
GTGGGCGCCCACGTGTGGCGGTCCATGTGCGCCGCCCGCCGGCTGCCGCCGGACGCCACGACTCGGCTCACCTTCCCGGC
AAATATCCGGCGCGCCCTGAGGCCGCCTCTGCCGGCGCGCTACTTCGGGAACGGGACCATCAGCCTGGGCACCGCCGGCA
AGGTGCGTGACATCGGGTCGGAAGAGCTGGGCTCCGTCGCCGCGCGGATCAGTGGCGCCGTCCGCCGGATGGACGACGAG
CTGGTGCGTTCCGCGATTGACTACCTGGAGATGAACGGC---GGCCGGCAGCCGGGCCGTGGCGCCCTGCCGGAGACAGA
GCTGAGGGTGGTGAGCTGGCTGGGCATGCCGATGTACGACGCGGATTTCGGGTGGGGGAAGCCGCTCGCGATGCACCGCG
CGGTGCAGCAGCGTGGCGGGAGCGTCTGCCTCATGGACGGCCCCAGC------GGCGGCGTGCGCATCCTCGTGTCTGCA
GAGGCTGCTGTTCTCGTCGACTTCCGGCGCCTGTTGTATGCCATCTTCTAGTT---------------------------
--------------------------------------------------------------------------------
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------------------------------------
>chr3B_969
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--------TCTTCCTCTTCTCACTCGACCTG-----AGAAGGAAAATGGGTGTACGTCG------GGAGGTGGAGGTGGT
GGAGTCGTGCATGGTGCCGCCCATGGAGCAGACGCCTAGCCAGGGCCTCTGGCTCTCCCCGCTCGACCTCGCAATTGTCA
ATAGAGGCCTCATCCCCACCGTCTACTTCTACAGCTCCAGCTCC------GGCGTCGACGATGACTTCTTCGACGTGGCC
AGGCTCAAGGTGGTTCTGGCCAAGGCTCTGGTGCCCTTCTACCCTCTCGCCGGCCGTATCGGCGTGGACGGCGGCGGTCG
AGCGGAGGTGCACTGCGCCGGCCAGGGCGCGCTCTTCGTCGTCGCTCGCTCGGACCTCACCGTCGATGGCCTCGTCGATT
GCCAGCCGTCGCCGGAACTAAGGAGGCTCTTTGTTCCCCGCTTCGACGACTCGCCGTCCATCATGTGCGCCATTCAGGTG
ACTTTCATGGGATGCGGTGGGGTCATCCTGGGGACGGCGCTGCACCACGCCGCCGTCGACGCCGCAAGCGTGTTCCACTT
CTTC-AAGACGTGGTCCACCTTCTCCAGAGACCGTGATGGG------------CCCGGGAGTGCGGCGCTCGACCTCCCG
TGCCACGACCGTACCCTCCTCCGCGCGCGCACACCGCCCATGGTCCACCCCGACGCTTTCACTGTGTTCT---GCCCGAA
GCTAAGCC---------TA---------TCCGAGACGTCGGGCATCGGCCCCGTCGTCAGCGAGATTTTCGCCGTCTCCA
AGGACCAGGTTGCCGCTCTCAAGCGTGCATGCACCAGCAGCGGCGA------CGGTGGCCGAGTGAGCACGTTCGTCGCC
GTGAGCGCCCACGTGTGGCGGTCCATGTGCGCCGCGCGCCGGCTGCCACCGGACGCCACGACGCGGCTCACCTTCCCGGC
CAACGTCCGGCGCGTCCTGAGGCCGCCGCTGCCGGCCCGCTACTTCGGGAACGCGGTCATCACCCTGGGCACCGCCGGCA
AGGTCCGGGACATAGGGTCGGAGGAGCTGGCCTCCGTGGCCGGCCGGATCAATGGCGCCGTCCGCCGAATGGACGACGAG
CTCGTGCGCTCGGCGATCGACTACTTGGAGATGAACGGC---GGCAAGCAGCCGGTC---GGCACCCTGCCGGAGACGGA
GCTGAGGGTGTTCAGCTGGCTGGGCATGCCGATGTACGACGCGGATTTCGGGTGGGGGAAGCCGCTCGCGATGCACCGCG
CGTTGGAGGAGCGCGGCGGGATCGTC-------TGGACGGCCTCAGC------GGCGGCGTGCGCATA------------
--------------------------------------------------------------------------------
-----------------------------------CCAGCTGATAGGCTTTCGCTATGTACCATTATCTATCTTCTTCTC
A---TTTTTTTTTCTTTTGGGAAACATTATTCATCTTCTTTATTCGGGAATGTACCACTATATATCAATTATATCACCTC
GCAAAAAATATATATATATCAATTATATCATTATTGTGACAGTTAAGATTTATGTAAGAATATTTTG-AAGTATAAATTT
ATTGTGTGATTCTGATTCAAAGAAATGTTCTTTTGCTAAACACAGCAGACGAGGATTGAAGTTTTAAATTTTAATCCCTC
TTTCCTCCCTCTATTAATCTTCATACCTAGTAAGGTGTGTGTGCACGGAAGGAAGTACAAATCTAGCTAGTTAAGCTAGT
TCAATGGTTAAGTACCCAACCAAATAATCAAGTGCTTGCTGATGACTACCTGTACTCGAGTGAGACGGTAGCGGGCAAAT
TGAACTTGGAAAAAAAAAATCCCCTCCCATGTCGCTCCCGTGAGGCGACGGGGAGGGCGCCCCTAGATCTTCGCCGCAAT
TCTC---CCTCCTCCTCCCTCGCCACCACCAGGGGGCGCTGCCAGCCAAAGCGCGATTGGCATCGGCGATGGCGGGGCTT
GGA------------CATTCTCTCGCACGTGGGGGCGGCGCGGGCCGACTTCCCCGTGGCAAGGCGCGTCGCCGCGATGC
TCTGGAGCAGCGGCGGCATACAAGAAAGGTTGCAGAGCGATGGGCAGCTTGGGTTTATATAATATATTTAGGGTATTCAA
TGCATTTTCAGC--TTTAATGGACATAAATCCAATTTGTAACTGAATGTGCATTAATAAAA-GCACAAATATGGTGAAAA
CATACCGTTAAAGTTCTTTATGATCTTTATGCTAATCTTACAAAATTAACTAAAAATGTACTACCTCCGTCCTAAAATTC
TTGTCTTAGATTTGTCTACATATGGATGTATCAAGT
>chr3B_992
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------------------------------------AGAAGGAAAATGGGTGTGGTGGGTCAGCAGGAGGTGGAGGTGCT
GGAGTCGTGCATGGTGAAGCCGAGCGTGGAGACGCCTAGCCATGGCCTCTGGCTCTCCCAACTCGACCTCAAAATGGTCA
ACAGAGGCCACACGCCGAACGTATACTTCTACACTCCCCACTCC------GGCGCCGTCGGCAACTTCTTCGACGTGGCC
AGGCTGAAGGCGGCGATGGCCAAGGCTCTCGTGCCCTTCTACCCTCTCGCCGGCCGTCTGGGCGTGGACGGCGAGGGCCA
GCCGGAGATCGACTGCGCCGGCCAGGGCGTGCTCTTCGTCGTCGCTCGCTCGGACCTCACCGTGGACGGCTTCGTCGACT
TCCAGCCGTCGCCGGAACTAAGGAGGCTCTTTGTTCCCCGCGTTGAGGACTCGCCGTCCATCATGTGCGCCATCCAGGTG
ACCTTCATGGGATGCGGCGGGGTGGCCTTGGGGACGGCGCTGCACCACGTTGCCATCGACGCCGTGAGCGCTGTCCACTT
CTTC-CAGACGTGGTCCGGCTTCTGCAGGGACGGCGACGCGGCGGCGG---------------CGGTGCTGGAGCTCCCA
TGCCACGACCGCACCCTCCTCCGCGCGCGCTCCCCACCCGTCGTCCACCCCGACGCCCTCACCGTGTTCTCCTGTCCGAA
GCTGAGCC---------TAGCAGTATCTGCCGAGCCGTCG------GGGGCCGTCGTCAACAAGATCTTCGTCCTCTCCA
ATGACCAGGTCGCCGCCCTCAAGCGCGCCTGCACCGGCGGCGGCGA------CGGCGGCCGCGTGAGCACGTTCTGCGCC
GTGAGCGCCCACGTGTGGAGGTCCATGTGCACCGCCCGCCGGCTGCCGACGGACGCGAGGACGCGCCTCACCTTCCCGGC
GAACATCCGGGGCGCCCTTCGGCCGCCGCTCCCCGCCCGCTACTTCGGGAACGGGATCATCGTCCTGGGCGCCGCTGGCA
GAGTGCGGGACATCGAGTCGGAGGAGCTGGGCTCCGTCGCCCACCGGATCAGTGGCGCGGTCGGCAGGATGGACGACGAG
CTGGTGCGTTCGGCGATCGACTACTTGGAGATAAACGGCAAGAGCAAGCAGCCCCCG---AGCAGCATGCCGGAGACGGA
GCTGAGGGTGGTGAGCTGGCTGGGCATGCCGGTATACGACGTGGATTTCGGGTGGGGGAAGCCCCTGGTGATGCACCGCG
CCGTGCAGCAGCGCGCCGGGATGGTCTACCTCATGGACGGCGTCAGCGGGAGTGGCGGCGTGCGCATCCTCGTGTCTACG
GAGGCTGTGATTCTCAACGACTTCCAGCGCCTGCTATATGCCAACTTCTAGTTGGA------------------------
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------------------------------------
>chr3D_999
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-------------------------------------------AAATGGGTGTGGATCAA------GAGGTGGAGGTGGT
GGAATCGTGCATGGTGAAGCCGAGCGAAGAGACGCCTAGCCATGGTCTCTGGCTCTCCCTACTCGATCTCAAAATGGTGA
ATAGAGGCCACACGCCGACCGTATACTTCTACAGTTCCGACTCC------GGCGCCGTCGATAACTTCTTCGACGTGGCC
AGGTTGAAGGCGGCGATGGCCAAGGCTCTCGTGGCCTTCTACCCTCTCGCCGGCCGTCTCAGCGTGGATGGCGACGGCCG
GCCAGAGATCGACTGCGCCGGCCAGGGCGCGCTATTCGTTGTCGCTCGTTCAGACCTCACCGTCGACGGCTTCGTTGACT
TCCAGCCGTCGCCGGAACTAAGGAGGCTCTTTGTTCCCCGCGTTGAGGACTCGCCTTCCATCATGTGCGCCATCCAGGTG
ACCTTCATGGGATGCGGCGGGGTGGCCTTGGGGACGGCGCTGCACCACGCGGCCATCGACGCCGTAAGCGCTGTCCACTT
CTTC-CAGACGTGGTCCGCCTTCTCCAGGGACGGCGACGCGGCGGCGA---------------CGGCGCTGGAGCTCCCA
TGCCACGACCGCACCCTCCTCCGCGCACGCTCCCCACCCGTCGTCCACCCCGACGCTCTCACCGTGTTCT---GTCCGAA
GCTACTGAGCCTAGCAGTA---------GCCGAGCCGTCG------GGGCTCGTGGTCAACCAGATCTTCGTCCTCTCCA
AGGACCAGGTCGCCGCTCTCAAGCGTGCCTGCACTGGCAGCGGTGA------CATCGGCCGGGTGAGCACGTTCTGCGCC
GTGAGCGCCCACGTGTGGAGGTCCTTCTGCACCGCCCGCCGGCTGCCGACGGACGCCACGACGCGCCTCACCTTCCCGGC
CAACATTCGGGGCGCCCTGAGGCCGCCGCTCCCGGCCCGCTACTTCGGGAACGGGATCATCGTCCTGGGCGCTGCCGGCA
AGGTGCGGGACATTGAATCGGAGGAGCTGGGCTCCGTTGCCCGCCGGGTCAATGGCGCGGTCCGCAGGATGGATGACGAG
CTTGTGCGCTCGGCGATCGACTACTTGGAGATAAACGGT---AGCAAGCAGCCCCCC---AGCAGCATGCCGGAGACTGA
GCTGAGGGTGATCAGCTGGCTGGGCATGCCGGTATACGACGCGGATTTCGGGTGGGGGAAGCCCCTCGTGATGCACCGTG
CTGTTCAGCAGCGCGCAGGATTCGTCTACCTCATGGACGGTGTCAGCGGGAGTGGCGGCGTGCGCATCCTCGTGTCTATG
GAAGCTCCAATTCTCAACGACTTCCAGCGCCTGCTATATGCCACCTTCGTCTAGTTC-----------------------
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------------------------------------
>chr3D_1202
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------GCGCTGGCCAAGGCTCTCGTGCCCTTCTACCCACTCGCCGGCCGTATCGGCGTGGACGGCGGCGGTCG
AGCGGAGGTGCACTACGCCGGCCAGGGCGCGCTCTTCGTCGTCGCTCGCTCGGACCTCACCGTGGATGGCCTCGTCGATT
GCCAGCCGTCGCCGGAACTAAGGAGGCTCTTTGTTCCCCGCTTCGAGGACTCGCCGTCCATCATGTGCGCCATTCAGGTG
ACTTTCATGGGATGCGGTGGGGTCATCCTGGGGACGGCGCTGCACCACGCCGCCGTCGACGCCGCAAGCGTGTTCCACTT
CTTC-AAGACGTGGTCCGCCTTCTCCAGAGACCT-------------------CCCGGGAGTGCGGCGCTCGACCTCCCG
TGCCACGACCGTACCCTCCTCCGCGCGCGCACACCGCCCATGGTCCACCCCGACGCTTTCACCGTGTTCT---GCCCGAA
GCTAAGCC---------TA---------TCCGAGACGTCG------GGCCCCGTCGTCAGCGAGATTTTCGCCGTCTCCA
AGGACCAGGTTGCCGCTCTCAAGCGTGCATGCACCAGCAGCGGCGA------CGGTGGCCGAGTGAGCACGTTCGTCGCC
GTGAGCGCCCACGTGTGGCGGTCCATGTGCGCCGCGCGCCGGCTGCCACCGGACGCCACGACGCGGCTTACCTTCCCGGC
CAACGTCCGGCGCGTCCTGAGGCCGCCGCTGCCGGCCCGCTACTTCGGGA-CGCGATCATCACCCTGGGCACCGCCGGCA
AGGTCCGGGACATAGGGTCGGAGGAGCTGGCCTTCGTGGCCGGCCGGATCAATGGCGCCGTCCGCCGAATGGACGACGAG
CTGGTGCGCTCGGCGATCGACTACTTGGAGATGAACGGC---GGCAAGCAGCCGGCC---GGCACCCTGCCCGAGACGGA
GCTGAGGGTGTTCAGCTGGCTGGGCATACCGATGTACGACGCGGATTTCGGGTGGGGGAAGCCGCTCGCGATGCACCGCG
CGGTGGAGGAACGCGGCGGGATCGTCTACCTCATGGACGGCCTCAGC------GGCGGCGTGCGCATCCTCGTGTCTGCC
GAGGCTGCTGTTCTCAACGACTTCCAGCGCCAGCTATATGCCATCATCTAGTTCGGAAGCCTCCGG----TCGTACGCAC
TATCGTGCATACTAGAGCTGAGTAAAAAAC--AAACCAGCTGAGAGGCTTTCATTATG--CCATTATCTATCTTCTTCTT
CTTTTTTTCTTTGCTTTTGGGGAACATTATTCATCTTCTTTATTCGGGAATGTACCACTATATATCAATTAT--------
--------------------------ATCATTATTGTGACGGTTAATATTTCTGTAAGAATATTTTTAAAGTATAAATTT
ATTGTGTGATTCTGATTCAAAGAAATGTTCTTTTCCTAAACACAGCAGACGAGGATTAAAGTTTTAAATTTTAATCCCTC
TTTCCTCCCTCTATTAATCTTCATACCT----------------------------------------AGTAAAGCTAGT
TCAATGGTTAAGTACCCAACCAAATAATCAAGTGCTTGGTGATGACTACCTGTACTCGAGTGAGACGGCAGCGAGCAAAT
TGGACTTGAAAAAAAAAA----CCTCCCATGTCGCTCCCGTGAGGCGACGGGGAGGGCGCCCCTAGATCTCCGTCGCAAT
TCTCCTTCCTCCTCCTCCCTCGCCACCACCAGGGGGAGCTGCCAGGCAAAGCGCGATCGGCATCGGCGCCGGCGCCGGCG
CCGGCGGGGCCTTGGCATCCTCTCGCACGTGGGGGCGGCGCGGGCCGGCTTCCCCGTGGCATGGCGCGGTGCAGTGATGC
TCTGGAGCAGCAGCGGCATACAAGAAAGGTTACAGAGCGATGGGCAGCTTGGTTTTATATAATATATTTAGGGTATTCAA
TGCATTTTCTGCTATTTAATAGACATAAATCCAATTT-TAACCGAATGTACATTAAAAGAATGCCCAAATATGGTGAAAA
CGTACCTTTAAAGTTCTTTACGATCTTTATGCCAATCTTACAAAATTAACTAAAAAT-----------------------
------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S------------------------S-S--S---------S---
-S--S-------SS-------S------------SSS-----------------------S-SSS---------------
-------SSSS-----------S--SSSSSSS--------------S-S--SSS-------------------SS-----
------S-----------------------------------------------S-------------------------
------S-----------------------------S------------------------S------------------
S--------------------------------------------SSSSS------------------------------
---------S--------------------------------------------------------S-------------
--------------------------------------S--------------------------S--S-----------
S--------------------------------S-----------------S----------------------------
--------------------------------S------------------------------S----------------
------S---S------------------------------SSS-SS-SSSSS---------------------------
--------------------------------------------------------------------------------
----------------------------------------------------S----S----------------------
----------------------------------------S---------------------------------------
--------------------------------------------------------------------------------
-------------------------------------S------------------------------------------
---------------------------------------------------------S----------------------
--------------------------------------------------------------------------------
---------------------S-------------------------------------------------S--------
------------------S------------------S------S-----------------------------------
----------------------------------------------------------S-----S-SSSS-----S----
-----------S-----------------SSS--S---------------------------------------S-----
---------------------------------------------------------------------------S----
----------------------------------------------------S---------------------------
------------S-------------------------------------------------------------------
-------S-----------------------------------S---S--------------------------------
-------------------------------S---------S--------------------------------------
--------------------------------------------------------------S-----------------
-------------------------------------------S---------S-------------------S------
-------------------------------------------------------------S--------------S---
--------------------------------------------------------------------------------
--------------------S-----------------------------------------------------------
------S---------------------------------------S----S----------S---S-----S------S
-----------------S----S-------------
>forward_536
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------CAAGTCCTTGGTGTTGCAGC------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>reverse_2182
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------AGGCATGCCGATGTACGAC----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>forward_678
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TTCACCGAGACAGTTCCAGC------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>reverse_2259
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------CGATCGTCTACCTCATGGATGG----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>forward_725
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------GGCGGAAGGAGATTG
AGGAG---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>reverse_2430
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------AAAAACCCAGCTGATAGGCT-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
