>input_sequence_54581
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------------------------------------------------------------------ATGCTCTCTT
TCTTTTACACAACTATTGGGTTTTATCTCAACACAATGATGGTTGTGCTAACCGTATATGCATTTGTGTGGGGCCGCTTT
TATCTTGCACTTAGTGGGCTCGAAGACTATATCAGCAGCAACACTAGCTCTATTGATAATGCAGCTCTGGGGGCTGTGTT
GAACCAGCAGTTTATCGTACAGCTTGGCCTGTTCACAGCATTGCCCATGATTATTGAGAGCTCACTTGAGCATGGTTTTC
TGACCGCGGTGTGGGATTTCATAATAATGCAGTTGCAGTTTGCGTCTGTCTTCTACACCTTCTCCATGGGGACCAAGACA
CACTATTTTGGGCGGACACTTCTTCATGGAGGTGCAAAGTACCGTCCTACTGGCCGTGGTTTCGTGGTGGAGCACAGGAA
ATTTTCCGACAACTATAGGCTATACGCCCGTAGCCATTTCATGAAAGCAATAGAGCTTGGTGTGATATTGTCCCTTTATT
TCTCTTATAGCAACGTCTCTGGGAGTACGTTGGTGTACATCCTGCTGACGCTTTCTAGTTGGTTTCTAGTATGCTCGTGG
ATTCTTGCCCCCTTCATTTTTAACCCATCGGGTTTGGACTGGCAGAAGAATGCCGATGATTTTGAGGATTTCTTCAACTG
GATTTGGTTCCGGGGTGGAATTTTGGTCAAGTCCGAGCAAAGCTGGGAGAGGTGGTGGGAAGAGGAAACCGACCATCTCC
GAACCACTGGCCTGTGGGGGAGCATCATTGAGATCATACTGGACCTCCGGTATTTCTTCTTCCAGTATGCTATTGTGTAT
CGGCTTCACATAGCCGGTGGGAGTAGAAGCATCCTTGTCTATGTTCTATCATGGGTATGCATACCGATGGCTCTTGTGGC
TCTTGTCACGATTACCTACTTCAGAGACAAATATTCAGCAAAGAAGCACATCCGCTACCGGCTTGTCCAGGCTGTTACTG
TTTGTGCCTCTTTGGCGGCTATAGTTGTGCTGCTTGCACTTACAGAGTTCCAGTTCATTGACACTTTCACCTGTCTCTTG
GCTTTTATACCAACTGGCTGGGGGATCATATCCATTGCTCTGGTTTTCAAGCCGTGCCTGGGGAAGTATGGCACTGTTTG
GAAAACCGTGGTTGATGTGGCACGTTTTTATGATATAATGTGCGGATTAATTGTGATGGCACCGATAGCTATCTTGTCAT
GGTTGCCCGGACTCGAGGAGATGCAAACAAGGATCCTGTTTAACGAAGCTTTCAGTAGGGGACTTCATATTTCCCAAATG
ATTACTCGCAAAAAAGCACGTGGAGCTTAA--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
>chr2A_1_TraesCS2A01G493000
CGAGATGCTGACTTTTCTTGAATCCGCATCTGAAGAGGAATTGGTTGCTGGATCCAGCACGAGCAGGCCTT---------
---CTTCTTCAAGCAGCGCATCTTCTTCACGTGCA------------CCGAGCAGAGCAAGCAGT------GGCGTGAGC
TCCTTGTTTAAAGGTGGCGAGTGTGGGGCTGTCTTTCTGAAATACACTTATGTGGTTGCATGCCAAATTTACGGTCAGCA
GAAAGCTAGAGATGACCCCCATGCCGTTGAGATACTGGAGCTAATGAAGAAGTACGAGGCACTCCGTGTTGCGTACGTTG
ACGAGAAACGCTCCAACGGCAACGGTGGTGAAACGGAGTATTTCTCCGTCCTTGTGAAATACGATCAGCTGCTACAACAG
GAGGTTGAGATCTACCGGATTAAGCTGCCCGGGCCGTTGAAGCTTGGCGAAGGCAAGCCAGAGAACCAGAACCATGCGCT
CATCTTCACAAGGGGTGATGCGGTTCAAACCATTGACATGAACCAGGACAACTACTTTGAAGAAGCTCTCAAGATGAGAA
ACCTGCTCGAGGAGTTGAATCCACGAGTTCGTCCGTCGGTTCGCAAGACGCCAAAAATCCTTGGAGTTCGGGAGCATGTG
TTCACCGGCTCTGTGTCTTCTCTTGCCTGGTTTATGTCTGCCCAAGAAACATGTTTCGTCACTCTGAGTCAGCGTGTCCT
TGCTAATCTACTCAAGGTTAGGATGCATTATGGCCACCCGGATGTATTTGATCGTCTTTGGTTCTTGGGCCGAGGTGGCA
TTAGTAAAGCATCAAAAGTGATCAACCTCAGCGAAGATATATTTGCTGGATTTAACTGTACTCTGCGTCGGGGCAATGTC
ACACACCATGAATACATCCAGGTTGGTAAAGGAAGGGATGTGGGGCTCAATCAGATCTCCATGTTTGAAGCCAAGGTTGC
TGGTGGCAATGGGGAGCAAACTCTAAGCAGAGATGTCTACAGACTGGGCCAAGGATTGGATTTCTTCCGGATGCTCTCTT
TCTTTTACACAACTATTGGGTTTTATCTCAACACAATGATGGTTGTGCTAACCGTATATGCATTTGTGTGGGGCCGCTTT
TATCTTGCACTTAGTGGGCTCGAAGACTATATCAGCAGCAACACTAGCTCTATTGATAATGCAGCTCTGGGGGCTGTGTT
GAACCAGCAGTTTATCGTACAGCTTGGCCTGTTCACAGCATTGCCCATGATTATTGAGAGCTCACTTGAGCATGGTTTTC
TGACCGCGGTGTGGGATTTCATAATAATGCAGTTGCAGTTTGCGTCTGTCTTCTACACCTTCTCCATGGGGACCAAGACA
CACTATTTTGGGCGGACACTTCTTCATGGAGGTGCAAAGTACCGTCCTACTGGCCGTGGTTTCGTGGTGGAGCACAGGAA
ATTTTCCGACAACTATAGGCTATACGCCCGTAGCCATTTCATGAAAGCAATAGAGCTTGGTGTGATATTGTCCCTTTATT
TCTCTTATAGCAACGTCTCTGGGAGTACGTTGGTGTACATCCTGCTGACGCTTTCTAGTTGGTTTCTAGTATGCTCGTGG
ATTCTTGCCCCCTTCATTTTTAACCCATCGGGTTTGGACTGGCAGAAGAATGCCGATGATTTTGAGGATTTCTTCAACTG
GATTTGGTTCCGGGGTGGAATTTTGGTCAAGTCCGAGCAAAGCTGGGAGAGGTGGTGGGAAGAGGAAACCGACCATCTCC
GAACCACTGGCCTGTGGGGGAGCATCATTGAGATCATACTGGACCTCCGGTATTTCTTCTTCCAGTATGCTATTGTGTAT
CGGCTTCACATAGCCGGTGGGAGTAGAAGCATCCTTGTCTATGTTCTATCATGGGTATGCATACCGATGGCTCTTGTGGC
TCTTGTCACGATTACCTACTTCAGAGACAAATATTCAGCAAAGAAGCACATCCGCTACCGGCTTGTCCAGGCTGTTACTG
TTTGTGCCTCTTTGGCGGCTATAGTTGTGCTGCTTGCACTTACAGAGTTCCAGTTCATTGACACTTTCACCTGTCTCTTG
GCTTTTATACCAACTGGCTGGGGGATCATATCCATTGCTCTGGTTTTCAAGCCGTGCCTGGGGAAGTATGGCACTGTTTG
GAAAACCGTGGTTGATGTGGCACGTTTTTATGATATAATGTGCGGATTAATTGTGATGGCACCGATAGCTATCTTGTCAT
GGTTGCCCGGACTCGAGGAGATGCAAACAAGGATCCTGTTTAACGAAGCTTTCAGTAGGGGACTTCATATTTCCCAAATG
ATTACTCGCAAAAAAGCACGTGGAGCTTAAGGTATGATGACCCACGTCCACGTGTCTCCTCTTTGTTACTCCAGTGTTTA
TCTGATTGTCTATAAACACTTCATGTAGTAAGTATTCTAGGTGACTTCTTGAACATGTAAATATGCCGGCTTAGGTGACA
CTTTTGACTATCATACTAGCGTACGTTTCCAGAAACTACAATCCATCCTTTCAGGTGGAGATATGATCTCAAAGAAGACT
TGCATAGTTGCATCTGATATAGGACAAACATGTTGTTTGTTTCCAGGAGTGGTTCTCAGTTAACTTCTAATTCTTTGATC
ATGATGCCAAAAACTGGAATTGGATAGTTATCTTTTTTTCTTCCTCCTAGATTTTTTTGTAGTTTCTTTCCTTTTGCTCC
CTATTTTGTACTGTATCATACTTTTATATTATTGAAAATTACAGTAGACGTTACACGGTTCAGCGTTTCAAAAAAAAAAC
CTGCTCTTCGCCCGAAATTACTTATCGTAGAAATGTGTGTATCTAAATGTATCTTAGTTTTAGATGCAACCTGTTTTATT
CATTTTTGTGACCAGTAATTTGGGACGAAGGGAGTATCATGCTAGTGTTGCCCACGTGTATGTTGGCTGGGGTTGGGAAA
GGATAGGTTCCATCTAGTTTTTGTGTGCCTGCTGCGTCATAGTGATCCATTCAGACATTCAGAAATAATGTTGTTTTTTA
CAACAAACAATATCTTTCTTTTCTTTTGCAGATTATCAATAGGTGTAACAGTTGGCCACCATCTTGGTGTGGTAATTTGC
AACGTCCGGTGACCTGGGAGGGCATCACGTCAGCATCTGCTGTGTTGGAGGGTGTTACCAGGAAGATATACTCCAGCACA
GATGCATGGCCGCCTAATAATAGGATTTGTGATGCTTGATTATTTGGTCCATATATGTACCACATATTGTGTTTTCTTTT
CCTCTAGGCAGGCTTCATGCCATGTCTTTTTTTCTTTAGCGCTCAAAGTGCTTCGACGTAAAAACAATTG
>chr2B_3
--AGATGCTGACTTTTCTTGAATCCGCATCTGAGCGTCGATTGATTACTGGATCGAGGAAGATCTCTTCAAGACCAGGTT
GGGCTTCTTCAAGCAGCGCATCTTCTTCACGTGCAGCACCACTGAGACTGAGCAGAGCAAGTAGTGGGGTTGGTGTGAGC
TCCTTGTTTAAAGGTAGCGAGTATCGGACTGCCCTTATGAAATACACTTATGTGGTTGCATGCCAACTTTATGGCCAACA
GAAATCTCGAAATGACCCCCATGCCGTTGAGATATTGGAGCTAATGAAGAAGCACGAGGCACTGCGCGTCGCTTATGTCG
ATGAAAAGCAATCCAG------CGGTGGTGAAACAGAGTACTTCTCTGTCCTTGTGAAATACGACCAACTGTTTCAGCGG
GAGGTCGAGATCTACCGGGTTAAGCTGCCTGGACCCATGAAGCTTGGTGAAGGCAAGCCAGAGAACCAGAACCATGCACT
CATCTTCACGAGGGGTGATGCCGTTCAGACCATCGACATGAACCAAGACAACTACTTTGAAGAAGCTCTTAAGATGAGAA
ACCTGCTTGAAGAGTTCAATCGCTATA---------GCAA---------GCCAAATATCCTTGGAGTTCGGGAGCATGTG
TTCACCGGTTCTGTGTCTTCTCTAGCTTGGTTTATGTCTGCTCAAGAAACATGTTTCGTCACTCTGAGCCAGCGCGTTCT
TGCTAATCTACTCAAGGTTAGAATGCATTATGGCCACCCGGATGTGTTTGACCGCCTCTGGTTCTTGGGCCGAGGTGGCA
TCAGTAAAGCATCGAAAGCAATCAACATCAGTGAGGATATATTTGCTGGATTTAACTGTACTCTCCGTGGGGGCAATGTT
ACACACCATGAATATATCCAGGTTGGTAAAGGAAGGGACGTTGGGCTCAATCAGATTTCCATGTTTGAAGCCAAGGTTGC
TGGTGGCAACGGGGAGCAAACTCTAAGCAGAGATGTCTACAGACTAGGCCACGGATTGGATTTCTTCCGGATGCTCTCAT
TCTTTTATACAACCATTGGATTTTATCTCAACACCATGATGGTTGTGCTAACTGTCTATGCATTTGTGTGGGGGCGCTTT
TATCTTGCACTCAGTGGGCTCGAGGACTACATCACAAACAACACTAGCTCTACTGATAATGCAGCCCTGTGGGCTGTCCT
GAACCAGCAATTTTTCATACAGTTTGGCCTCTTCACAGCATTGCCCATGATTATTGAGAACTCCCTAGAGCATGGTTTCC
TCATTGCGGTGTGGGATTTCATAGTAATGCAATTGCAGTGTGCATCTGTTTTCTACACCTTCTGCATGGGGACCAAGACA
CACTATTATGGGCGGACACTCCTTCATGGAGGCGCAAAGTACCGTCCTACTGGCCGTGGCTTCGTGGTGGAGCACAAGAA
ATTTGCTGAGAACTATAGGCTGTACGCCCGTAGCCATTTCACGAAAGCAATAGAGCTTGGTGTGATATTGTGTCTTTATT
CATCTTATAGCAACATCGCAGGGGATACATTGGTGTACATCCTGCTGACACTTTCCAGTTGGTTCCTAGTATGCTCCTGG
ATTCTTGCCCCCTTCATTTTCAATCCATCAGGTTTGGACTGGCAGAAGAATTCTAATGATTTTGAGGATTTCTTCAGTTG
GATTTGGTTCCAGGGCGGAATTTCGGTCAAGTCTGATCAGAGCTGGGAGAAGTGGTGGGAAGAGGAAACCGACCATCTTC
GGACCACTGGTCTGTGGGGGAGCATCATTGAGATCATACTGGACCTCCGGTATTTCTTCTTCCAGTATGCAATTGTGTAT
CGGCTTCACATGGCCGGTGGGAGTAGAAGCATCCTTGTCTATGTTCTATCCTGGGCATGCATACCGTTGCCTTTTCTGGC
TCTTGTCACGGTTACCTATTTCAGAGACAAATATTCAGCAAAGAAGCACATTCGCTACCGGCTTGTCCAGTCTGTTATTG
TTTGTGCCTCTTTGGCTGCTATCATTGTGCTGCTTACACTCACAAAGTTCCAGTTCATTGACACTTTTACTAGTCTCTTG
GCTTTTCTACCAACTGGCTGGGGAATCATATCCATTGCTCTGGTGTTCAGGCAGTACCTGAAGAAGTCTGACACTGTTTG
GAAAACTGTGGTTGTTGTGGCACGTTTTTATGACATAACATTGGGATTAATCGTTATGGCACCCATAGTTGTGCTGTCAT
GGTTGCCTGGACTCCGGGAATTGCAGACGAGGATCCTGTTTAATGAAGCTTTCAGCAAGGGACTTCATATTTCCCAAATG
ATTACTCGCAGAAAAACGCATCGAGCTTAGGGTATGAT------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
>chr3A_80
--------------------------------------------------------------------------------
-----------AGCAGGGCCTCTTCGTCACACACA------------CTGAGCAGAGCAACCAGT------GGTGTGAGC
GCTTTGTTTAAAGGTAGCGAGTATGGGACTGTCCTTATGAAATACACTTATGTGGTTGCATGCCAAATTTATGGCCAGCA
GAAAGCTAAAAATGATCCGCATGCTTATGAGATATTGGAGCTAATGAAGAATTATGAAGCACTTCGTGTTGCCTATGTTG
ACGAAAAACACTCGGCTGGTGCC------GAACCGGAGTACTTCTCCGTCCTTGTGAAATACGACCAGCAGTTGCAGAAA
GAGGTTGAAATTTATCGAGTGAAGTTGCCTGGGCCACTGAAGCTTGGTGAAGGCAAGCCAGAGAACCAGAATCATGCACT
CATCTTCACAAGGGGTGATGCGGTTCAAACTATTGATATGAACCAAGACAATTACTTTGAAGAGGCTCTGAAGATGAGAA
ATCTGCTAGAAGAGTTCAATCGCCATTATGGAATTCGCAA---------GCCAAAAATCCTTGGGGTTCGGGAACATGTG
TTCACTGGCTCTGTATCTTCTCTAGCTTGGTTTATGTCTGCCCAAGAAACAAGTTTTGTCACTCTGGGGCAGCGGGTTCT
AGCTAACCCACTCAAGGTTAGAATGCATTATGGCCACCCAGATGTGTTTGATCGTCTTTGGTTCTTGGGCCGAGGTGGTA
TTAGTAAAGCATCAAGAGTAATCAACATCAGTGAGGATATCTTTGCTGGATTCAATTGTACCCTCCGTGGGGGCAATGTT
ACACACCATGAGTACATCCAGGTTGGTAAAGGAAGGGATGTGGGGCTCAACCAGGTTTCTATGTTTGAAGCCAAGGTTGC
TAGTGGCAATGGTGAGCAAACTCTGAGCCGTGATGTTTACAGACTGGGCCACAGATTGGATTTCTTTCGGATGCTCTCGT
TTTTTTATACAACCATTGGATTCTATTTCAACACAATGATGGTTGTGCTAACTGTCTATGCATTTGTCTGGGGGCGATTT
TATCTTGCACTTAGTGGGCTGGAGGAGTACATCACCAAGAACACTAGCACTACTAATAATGCAGCCCTGGGAGCTGTCTT
GAATCAGCAGTTCGTCATACAGCTGGGCCTGTTCACAGCATTGCCCATGATTATTGAAAATTCACTTGAGCATGGTTTCC
TCAATGCTGTATGGGATTTCTTAAAAATGCAATTGCAGTTTGCATCTGTTTTCTACACCTTCTCCATGGGAACCAAGACA
CATTATTATGGGCGGACAATCCTTCATGGAGGTGCAAAGTATCGAGCTACTGGCCGTGGATTTGTTGTGGAGCACAAGAA
ATTCGCCGAGAACTACAGGCTATATGCCCGTAGCCATTTTCTAAAAGCAATAGAGCTTGGCGTGATATTGGTTCTCTATG
CATCTTACAGCAGCAGCGCTGGGAATACATTTGTGTACATCCTGCTGACGCTTTCCAGTTGGTTTTTAGTATCCTCGTGG
ATTTTGGCCCCCTTCATCTTTAATCCATCAGGTTTGGACTGGCTAAAGAATTTTAATGATTTTGAGGATTTCCTAAGCTG
GATTTGGTTCCAGGGTGGAATCTCAGTGAAGTCAGATCAAAGCTGGGAAAAGTGGTGGGAGGAGGAAACTGATCACCTTA
GGACCTCTGGTCTGTGGGGGAGCATCTTGGAAATCATTATAGACCTCCGATATTTCTTCTTTCAGTATGCAATTGTTTAC
CGGCTTCACATTGCCAATGAGAGTAGAAGCATCCTTGTCTATCTTCTTTCATGGACATGCATACTGCTGGCTTTTGTGGC
TCTTGTCGCAGTTGCTTACTTCCGAGACAGATACGCAGCAAAGAAGCACATAAGGTATCGGCTTGTCCAAGCTGTAATTG
TTGGTGCCACTGTGACTGGTATTGTCCTGTTGATAGAATTCACAAATTTCCAGTTCATTGATGCCTTTACTAGTCTCTTG
GCTTTTCTGCCAACTGGCTGGGGAATCATATCTATTGCTCTGGTGTTCAAGCCATACCTGAGGAGGTCTGAGACAGTCTG
GAAAACTATTGTCACAGTGGCACGCCTGTATGATATACTGTTTGGAGTAATTGTTATGACACCTGTAGCTGTGTTGTCAT
GGTTGCCGGGGCTCCAGGAAATGCAAACAAGGATCCTATTCAATGAAGCCTTCAGCCGAGGACTTCATATTTCTCAAATG
TTTACTGGCAAAAAAGGACATGGAGTTTAAGGTATGAT------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
>chr3B_80
--------------------------------------------------------------------------------
-----------AGCAGGGCCTCTTCGTCACACACA------------CTGAGCAGAGCAACCAGT------GGTGTGAGC
TCTTTGTTTAAAGGTAGCGAGTATGGGACTGTCCTTATGAAATACACTTATGTGGTTGCATGCCAAATTTATGGCCAGCA
GAAAGCTAAAAATGATCCGCATGCTTATGAGATATTGGAGCTAATGAAGAATTATGAAGCACTTCGTGTTGCCTATGTTG
ACGAAAAACACTCGGCTGGTGCC------GAACCAGAGTACTTCTCCGTCCTTGTGAAATACGACCAGCAGTTGCAGAAA
GAGGTTGAAATTTATCGAGTGAAGTTGCCTGGGCCACTGAAGCTTGGTGAAGGCAAGCCAGAGAACCAGAATCATGCACT
CATCTTCACAAGGGGTGATGCGGTTCAAACTATTGATATGAACCAAGACAATTACTTTGAAGAGGCTCTGAAGATGAGAA
ATCTGCTAGAAGAGTTCAATCGCCATTATGGAATTCGCAA---------GCCAAAAATCCTTGGGGTTCGGGAACATGTG
TTCACTGGCTCTGTATCTTCTCTAGCTTGGTTTATGTCTGCCCAAGAAACAAGTTTTGTCACTCTGGGGCAGCGAGTTCT
AGCTAACCCACTCAAGGTTAGAATGCATTATGGCCACCCAGATGTGTTTGATCGTCTTTGGTTCTTGGGCCGAGGTGGTA
TTAGTAAAGCATCAAGAGTAATCAACATCAGTGAGGATATCTTTGCTGGATTCAATTGTACCCTCCGTGGAGGCAATGTT
ACACACCATGAGTACATCCAGGTTGGTAAAGGAAGGGATGTGGGGCTCAACCAGGTTTCTATGTTTGAAGCCAAGGTTGC
TAGTGGCAATGGTGAGCAAACTCTGAGCCGTGATGTTTACAGACTGGGCCACAGATTGGATTTCTTTCGGATGCTCTCGT
TTTTTTATACAACCATTGGATTCTATTTCAACACAATGATGGTTGTACTAACTGTCTATGCATTTGTCTGGGGGCGATTT
TATCTTGCACTTAGTGGGCTCGAGGAGTACATCACAAAGAACACTAGCACTACTAATAATGCAGCCCTGGGAGCTGTCCT
GAATCAGCAGTTCGTCATACAGCTGGGCCTGTTCACAGCATTGCCCATGATTATTGAAAATTCACTTGAGCATGGTTTCC
TCAATGCTGTATGGGATTTCTTAAAAATGCAATTGCAGTTTGCATCTGTTTTCTACACCTTCTCAATGGGAACCAAGACA
CATTATTATGGGCGGACAATCCTTCATGGAGGTGCAAAGTATCGAGCTACTGGCCGTGGATTTGTTGTGGAGCACAAGAA
ATTCGCCGAGAACTACAGGCTATATGCCCGTAGCCATTTTCTAAAAGCAATAGAGCTCGGCGTGATATTGGTTCTCTATG
CATCTTACAGCAGCAGCGCTGGGAATACATTTGTGTACATCCTGCTGACGCTTTCCAGTTGGTTTTTAGTATCCTCGTGG
GTTTTGGCCCCCTTCATCTTTAATCCATCAGGTTTGGACTGGCTGAAGAATTTTAATGATTTTGAGGATTTCCTAAGCTG
GATTTGGTTCCAGGGTGGAATCTCAGTGAAGTCAGATCAAAGCTGGGAAAAGTGGTGGGAGGAGGAAACTGATCACCTTA
GGACCTCTGGTCTGTGGGGGAGCATCTTGGAAATCATTATAGACCTCCGATATTTCTTCTTTCAGTATGCAATTGTTTAC
CGGCTTCACATTGCCAGTGAGAGTAGAAGCATCCTTGTCTATCTTCTTTCATGGACATGCATACTGCTGGCTTTTGTGGC
TCTTGTCGCAGTTGCTTACTTCCGAGACAGATACGCAGCAAAGAAGCACATAAGGTATCGGCTTGTCCAAGCTATAATTG
TTGGTGCCACTGTGACTGGTATTGTCCTGTTGATAGAATTCACAAATTTCCAGTTCATTGATGCCTTTACTAGTCTCTTG
GCTTTTCTGCCAACTGGCTGGGGAATCATATCTATTGCTCTGGTGTTCAAGCCATACCTGAGGAGGTCTGAGACAGTCTG
GAAAACTATTGTCACAGTGGCACGCCTGTATGATATACTGTTTGGAGTAATTGTTATGACACCTGTAGCTGTGTTGTCAT
GGTTGCCGGGGCTCCAGGAAATGCAAACAAGGATCCTATTCAATGAAGCCTTCAGCCGAGGACTTCATATTTCTCAAATG
TTTACTGGCAAAAAAGGACATGGAGTTTAAGGTATGAT------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
>chr3D_80
--------------------------------------------------------------------------------
-----------AGCAGGGCCTCTTCGTCACACACA------------CTGAGCAGAGCAACCAGT------GGTGTGAGC
TCTTTGTTTAAAGGTAGTGAGTATGGGACTGTCCTTATGAAATACACTTATGTGGTTGCATGCCAAATTTATGGCCAGCA
GAAAGCTAAAAATGATCCGCATGCTTATGAGATATTGGAGCTAATGAAGAATTATGAAGCACTTCGTGTTGCCTATGTTG
ACGAAAAACACTCGGCTGGTGCG------GAACCAGAGTACTTCTCCGTCCTTGTGAAGTACGACCAGCAGTTGCAGAAA
GAGGTTGAAATTTATCGAGTGAAGTTGCCTGGGCCACTGAAGCTTGGTGAAGGCAAGCCAGAGAACCAGAATCATGCACT
CATCTTCACAAGGGGTGATGCAGTTCAAACTATTGATATGAACCAAGACAATTACTTTGAAGAGGCTCTGAAGATGAGAA
ATCTGCTGGAAGAGTTCAATCGCCATTATGGAATTCGCAA---------GCCAAAAATCCTTGGGGTTCGGGAACATGTG
TTCACTGGCTCTGTATCTTCTCTAGCTTGGTTTATGTCTGCCCAAGAAACAAGTTTTGTCACTCTGGGGCAGCGAGTTCT
AGCTAACCCACTCAAGGTTAGAATGCATTATGGCCACCCAGATGTGTTTGATCGTCTTTGGTTCTTGGGCCGAGGTGGTA
TTAGTAAAGCATCAAGAGTAATCAACATCAGTGAGGATATCTTTGCTGGATTCAATTGTACCCTCCGTGGGGGCAATGTT
ACACACCATGAGTACATCCAGGTTGGTAAAGGAAGGGATGTGGGGCTCAACCAGGTTTCTATGTTTGAAGCCAAGGTTGC
TAGTGGCAATGGTGAGCAAACTCTGAGCCGTGATGTTTACAGACTGGGCCACAGATTGGATTTCTTTCGGATGCTCTCGT
TTTTTTATACAACCATTGGATTCTATTTCAACACAATGATGGTTGTGCTAACTGTCTATGCCTTTGTCTGGGGGCGATTT
TATCTTGCACTTAGTGGGCTCGAGGAGTACATCACCAAGAACACTAGCACTACTAATAATGCAGCCCTGGGAGCTGTCCT
GAATCAGCAGTTCGTCATACAGCTGGGCCTGTTCACAGCATTGCCCATGATTATTGAAAATTCACTTGAGCATGGTTTCC
TCAATGCTGTATGGGATTTCTTAAAAATGCAATTGCAGTTTGCATCTGTTTTCTACACCTTCTCCATGGGAACCAAGACA
CATTATTATGGGCGGACAATCCTTCATGGAGGTGCAAAGTATCGAGCTACTGGCCGTGGATTTGTTGTGGAGCACAAGAA
ATTCGCCGAGAACTACAGGCTATATGCCCGTAGCCATTTTCTAAAAGCAATAGAGCTCGGCGTGATATTGGTTCTCTATG
CATCTTACAGCAGCAGTGCTGGGAATACATTTGTGTACATCCTGCTGACACTTTCCAGTTGGTTTTTAGTATCCTCGTGG
ATTTTGGCCCCCTTCATCTTTAATCCATCAGGTTTGGACTGGCTAAAGAATTTTAATGATTTTGAGGATTTCCTAAGCTG
GATTTGGTTCCAGGGTGGAATCTCAGTGAAGTCAGATCAAAGCTGGGAAAAGTGGTGGGAGGAGGAAACTGATCACCTTA
GGACCTCTGGTCTGTGGGGGAGCATCTTGGAAATCATTATAGACCTCCGATATTTCTTCTTTCAGTATGCAATTGTTTAC
CGGCTTCACATTGCCAATGGGAGTAGAAGCATCCTTGTCTATCTTCTTTCATGGACATGCATACTGCTGGCTTTTGTGGC
TCTTGTCGCAGTTGCTTACTTCCGAGACAGATACGCAGCAAAGAAGCACATAAGGTATCGGCTTGTCCAAGCTATAATTG
TTGGTGCCACTGTGACTGGTATTGTCCTGTTGATAGAATTCACAAATTTCAAGTTCATTGATGCCTTTACTAGTCTCTTG
GCTTTTCTGCCAACTGGCTGGGGAATCATATCTATTGCTCTGGTGTTCAAGCCATACCTGAGGAGGTCTGAGACAGTCTG
GAAAACTATTGTCACAGTGGCACGCCTGTATGATATACTGTTTGGAGTAATTGTTATGACACCTGTAGCTGTGTTGTCAT
GGTTGCCGGGGCTCCAGGAAATGCAAACAAGGATCCTATTCAATGAAGCCTTCAGCCGAGGACTTCATATTTCTCAAATG
TTTACTGGCAAAAAAGGACATGGAGTTTAAGGTATGAT------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
>SNPs
SS-------------------------------SSSSSS----S--S-------S--S-S--S-SSSS-SS---------
------------------------------------------------S------------------------S------
---------------S------S----S-----S--S----------------------------------S--S-----
----------S-----------------------S----------------------------S--------S--S----
----S----S-----SS--SSS------------------S-----------------------S------S-S--S---
------------------S----------S-----SS----------S-----------------------------S--
---------------------------------------------S-----------------------S----------
-------S--S-----S----SS-SSSS-S-SSSSSSSSSSSSSSSSSS-------------------------------
-----------------------S--S-----------------------------------------S-----S--S--
---------------------S-----------------------S----------------------------------
-------------------S------S----S--S-----------------------------S---S----------S
--------------------------------------------------------S-----------------------
---------------------------------------------------S--------------------------S-
-------S-----S-----S--------------------------------S--S-----------------S------
-----------------------S-----S----S--S--------------S------------S-----------S--
-------------S--S------------------------------------------S------------------S-
-S-SS--------------------------S-----------S-----S------------------------------
-------S------------S--------------------------------------S----------------S---
----S----S-------------------------------------------------------------SS-------
SS------------S--S------S---S--------------------------S------------------------
-----------------------S-----S---------------------S-SS---------------------S---
-----------S-----------S---------S--S-------------S---------------------------S-
-S--------S-----------------------------------------------------------S---------
-----------S-------------------------------------------S----------S-----S-------
----------S----------------------------------------S-------------------------S--
----------------S-----S-----------------S---S----------------------S--SS--------
------S----------------S--------------------S----------S----S------S--S---------
------S-------S--------------------------SS-----------S--------S------S-S-------
-------S------S----S-----------------------S-----------S------------------------
-------------------S------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_325
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------GTGTTGCGTACGTTG
ACGAG---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
>reverse_1630
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------GGGTTTGGACTGGCAGAAGA-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
>forward_1576
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------ACATCCTGCTGACGCTTTCT------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
>reverse_3154
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------CATCTGCTGTGTTGGAGGGT---------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
