>input_sequence_54540
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-------------------------------------------------------------------------ATGAAGA
GCAGGAGGCAGAGCGGCCGCGGAGGAGCCATGCTGC---CGGACGGC---------------------------------
---------GGCT------------------GCAGCGGCAAGATGGAGCGCAAGGACGTGGAGAAGAACCGCAGGCTGCA
CATGAAGGGCCTCTGCCTCAAGCTCTCCTCCCTCCTCC---C------CGCCTCATCCGCACACCACCTCCGCCACTATT
---CTTCTACATCTTCCTCGCCGCCGTCCAGCAACAAGGTACGTAAAAACA-----------------------------
-----------------------------------------CTCTTGATTCGC---------CCC---------------
-------------------------------------------CAAAAGGC-------------------AGACTAATTT
GCTCAACTCACGCAGCTGT---------CCGGGGAACAGACACCTGATTAACCACACTCTTACCGATCA-----------
---------GTA---ACACGCAGTAGAGAATACACT-ATTCTA---TTCATACTAGTACCAAAAAATC------------
-------------------------------------TCACTGTTACCCATAACAA------------------------
----------------------------GTGTGTGATGGG---GAGCACCTACTTGTGTG--------------------
---------------------------------GTCCACTGAATTA---------------------------GTACGTA
TGTCTCAACTTGGTTGGTGGAGACAAAGTGACGACGTTCACAAGAAAAAG-AA---------------TATCTCATCAT-
---CATTTCGGCACGTGTCAG----ATTCGGTGGCAGTAGGAGCCATAGAAATTGATCAGC------------------G
TAGTACCACTCACTCATTTGGAT--------------------------------AACAATTATTTTGTGGTCAATTTTT
TTT---ACTTTGTTGTAAAGAAAAATTAAAATGTTTG-------GTCGGTGAATCCATCCCCAACAAT--TAATCCTTTC
AACT--------ACCAACCCAAGATT----GAAG----ATCACTCC-------TCTGATTCGATTCACATGGAC----CT
GCCATACAAAATCTGAATATAT---TTTT----------------------------GATT----------------GCA
AGTGCAAGATGATGCCAATCAGTGGATCGTCTGTTTTTTGGACTACTA--------------------------------
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-----CTAGCTACTACCAGCAGGA--------------------------------------------------------
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-----------------------------------------------------------------------------TTG
ATTGATCGGCTAATCT-------GACAACCACGAC-TTGGT---TCTGTTTGTGCAGGACGCGGCGACGCAGCTGGACCA
GCTCGACAGCGCGGCGGCGTACATCAAGCAGCTCCGGGGCCGGATCGACGACCTCAAGCGCCGAAAGCAGGCCGCCCTCT
CCGGC---------------AACACCGTTGGC---------TGCTCATCCTCCGTCTCCGCCGGCGACTACAAGTCACAG
------------ACGGCAGCGCTGCCTGTGATCGAGGTGCGTCACCAGGACGGCA---CCCTGGACGTGGCTCTGGCGAG
CGAGGCCGGGCGGCCGTTCCGGCTGCACGAGGTGATCGCCGTGCTGGAGCAGGAGGGCGCCGACGTGGTCAGCGCCAGCT
TCTCTGTAGTCGGCGACAAGATCTTCTACACTGTCCATTCCCAGGCGCTCTGCCCCCGCATCGGCCTCGACGCCGGCAGG
GTCGCCCACCGGCTCCGTGGCCTCGCCGCAGCCGC------CACCGTCTCGTCCTCCGTCCTCATGACATGA--------
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>chr3D_1_TraesCS3D01G009200
CATACAACGTAGTGTTTTCCCTACTTATTTGTGCATTATAAGAGGTATGCGTTCGCCGGCGAATTACTAACTAATTAATA
TGTACAAATAATATCTCACTTCCCTGTCGGTCCATATCTCAATTCCCATGGTGTATTTATGACATTTGTGGGGACAAGAC
GTCGATGTCATCACGTGATCATTC----ATTAATGGGGTCATTGTGACTTGTATTATACGGTTGATAATTGATCGGATTG
GAAGGCGTGGGTGCATGATTGCGAAAGGCTGCTAAGAGCGCTTGTGATTGTATTTTTGTGGGACACGTAGGTTGATAGTG
ATTGTGTTTTTGCGTACGTAGTGCCTATATACACACACGTGTGTACAGGCGGGCTAGCAGCAACGTTATCAATCGCAC--
------TGTATATATACGTAGCCCACGCGATTGCACAGTTCGTCT-----------------------------------
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---------------------------CTTGTTCACACCAGAAAGGGGATATCCAAAGGCATGTATTGATGTATAGTACT
ATACTTGCATTGCTGGTACGATC---------------------------------------------------------
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-------------------------------------------------------------------------------T
GTGTTGACCGTGAAACCGCGTGGTCGTCGTTTTCTCACTCGGTCACTGCTGCTCGTGGATCCCTTCACCGTCACGCGC--
------GTGCATCTCATCAACCCATGTTACGTCG-----CATTTCACTCTCGTTACGCGCGTGGCATCAC----------
----------ATTATGTTTGTGCAACGTGAGAG--------------------CGCGAAAACATACACGTTTCGGTGGAC
CTCTGACTTTCCAC------------------CGTTGCTCTACTCCTCTCCACTCATCTTCATCTCTATCTCTCTCAAAA
AAACATATTAAAAAAAA--------GAAAAAAGAAAAGAGATTCCATCTCCTTTCTTTTTCCCTCGCTTTCTCGCTGGCA
GG------------TCCGTCTTCCTCCTCCGTCCACTGGAATCCTCTGCT---------GCTGTATAAATAAGCTCAACT
ACCAGCTCCAACCTC-----CCTCCCTCCTCCTATCCATTCCATCCACACCTCACCCTCAGCTCACCTGCTCC-------
-------------ATCCCTCCTCCTCGATCGGGAGAGAGAG------------AACTCATCTAAAC------AATGAAGA
GCAGGAGGCAGAGCGGCCGCGGAGGAGCCATGCTGC---CGGACGGC---------------------------------
---------GGCT------------------GCAGCGGCAAGATGGAGCGCAAGGACGTGGAGAAGAACCGCAGGCTGCA
CATGAAGGGCCTCTGCCTCAAGCTCTCCTCCCTCCTCC---C------CGCCTCATCCGCACACCACCTCCGCCACTATT
---CTTCTACATCTTCCTCGCCGCCGTCCAGCAACAAGGTACGTAAAAACA-----------------------------
-----------------------------------------CTCTTGATTCGC---------CCC---------------
-------------------------------------------CAAAAGGC-------------------AGACTAATTT
GCTCAACTCACGCAGCTGT---------CCGGGGAACAGACACCTGATTAACCACACTCTTACCGATCA-----------
---------GTA---ACACGCAGTAGAGAATACACT-ATTCTA---TTCATACTAGTACCAAAAAATC------------
-------------------------------------TCACTGTTACCCATAACAA------------------------
----------------------------GTGTGTGATGGG---GAGCACCTACTTGTGTG--------------------
---------------------------------GTCCACTGAATTA---------------------------GTACGTA
TGTCTCAACTTGGTTGGTGGAGACAAAGTGACGACGTTCACAAGAAAAAG-AA---------------TATCTCATCAT-
---CATTTCGGCACGTGTCAG----ATTCGGTGGCAGTAGGAGCCATAGAAATTGATCAGC------------------G
TAGTACCACTCACTCATTTGGAT--------------------------------AACAATTATTTTGTGGTCAATTTTT
TTT---ACTTTGTTGTAAAGAAAAATTAAAATGTTTG-------GTCGGTGAATCCATCCCCAACAAT--TAATCCTTTC
AACT--------ACCAACCCAAGATT----GAAG----ATCACTCC-------TCTGATTCGATTCACATGGAC----CT
GCCATACAAAATCTGAATATAT---TTTT----------------------------GATT----------------GCA
AGTGCAAGATGATGCCAATCAGTGGATCGTCTGTTTTTTGGACTACTA--------------------------------
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-----CTAGCTACTACCAGCAGGA--------------------------------------------------------
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-----------------------------------------------------------------------------TTG
ATTGATCGGCTAATCT-------GACAACCACGAC-TTGGT---TCTGTTTGTGCAGGACGCGGCGACGCAGCTGGACCA
GCTCGACAGCGCGGCGGCGTACATCAAGCAGCTCCGGGGCCGGATCGACGACCTCAAGCGCCGAAAGCAGGCCGCCCTCT
CCGGC---------------AACACCGTTGGC---------TGCTCATCCTCCGTCTCCGCCGGCGACTACAAGTCACAG
------------ACGGCAGCGCTGCCTGTGATCGAGGTGCGTCACCAGGACGGCA---CCCTGGACGTGGCTCTGGCGAG
CGAGGCCGGGCGGCCGTTCCGGCTGCACGAGGTGATCGCCGTGCTGGAGCAGGAGGGCGCCGACGTGGTCAGCGCCAGCT
TCTCTGTAGTCGGCGACAAGATCTTCTACACTGTCCATTCCCAGGCGCTCTGCCCCCGCATCGGCCTCGACGCCGGCAGG
GTCGCCCACCGGCTCCGTGGCCTCGCCGCAGCCGC------CACCGTCTCGTCCTCCGTCCTCATGACATGATTTCTTTC
TTTCTCTCTTTCTTTGTTG-------------------------------TTTTTTCATCAATCGCGGTAGCTT------
-------------AGCTTAGCTTAGTACTGCTCTGCTCTGCTCGTGAGT--GAGCTTCAGGTTTGTCTGAAATCTACTAG
TGTAGCCATGTACT-----TGCATGTCTCCTCC-TTTCTGAAGATGTGAGATATTTT-AACTTTCAGAATGCTGGGTTTC
TTTCTACTAAGAAGGCTTGAGACATGGGTGTGGGGGCATTAGGCTCTGTTTGGTTGAGCCCAAGATTCTGAAAAAGCCGC
TGTGAGCCGTGAGCATCTGAAA------------AAACTGCCGCTATCACGGCGTGATCGCTTCTTTGAAACAGCCACGT
GATCTGCCTGGCTTGGGGAATCGTGCGAGATCACGGGGCTATCATGGCGTGATCGCTGCTTTGAAATGGACACGCGATCT
GCATGGCTTTTTCTTATGTTTTTGATGGAAGCGATGGCTGTTATACTAGACATTTGCAACC-------------------
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---GTGTACGTGGTCTGGACCTCCGTGGCTGAGCAAGGTACATGGTACATGGTCCATGGTCCAGAGCGTGGCGTGGATGG
CCATGGTAGTACATGGTCCAGATCGTGCTGTGGATGCACTTAA-------------ACTTAATTTGGCATGCATCTCTCT
TGTTCTGGGTCCACAACGTGGTCTGGGGCCTGAGCTTACGGCCACCAGAAAGACGTGTGTGGGTTTTGTTTTCCAGGAGT
AAACACTGTAGCTCTAGTGTTCCTATTCTTGGGCTCAGGGAGTAAATACGGTGGTTCCTATTTGGCGGATTTTTTTTTGA
CAGGAAATCTTTCATGCTAGCTATATTAACTTCAAATAATGCCTACATCGTCGGTTAAAAAATAGAGACAATACTAAGGA
ATGAATCCAACCACAAAGACGATGGTCTAACTTCAACGGGGTAGAGTACAGAGCTAGTGACGTCTTACGAAATGACGATG
GTGGCGTACCACGCAAAGAAAAAAACGATGCTCCGTAGGATCGACTTTTTACAACATC
>chr3B_88
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-------ATAGTATCTCCATGCCCTGTCAGTCCATATCTCAATTCCCACAGTGTATTTTTGACATTTGTGGAGACA-GAC
GTCGATGTCATCACGTGATCACTG----ATTAATGGGGTCATTGTAACTTC---TATATGGTTGATAATCGATCGGATTG
GAAGGCGTGGGTGCGTGATAGCGAAAGGCTGCTAACAGCTCTTGTGATTTTGTTTTTGTGGGACACGTAGGTTGATAGTG
ATTGTGTTTTTGCC-ACGTAGTGCCTATATAG--ACACGTGTGTACAGGCTGGCTAGCAGCAACATTATCAGTCGCACAG
TTGCACTGTATATATACCTAGCCCACGTGATTGCACAGTTGGTCTGCTACTTAACACTAGAAGAACGCCCGTCGTTGCAA
CGGGGCCACACTAACTTTAAGAGTTCAATACTAATATTCTCATACATATCAAGTGACATTGACGACCTTTTTTACCATCA
AATCCTCACACACACCCTCTCTGCCTCCCTTTTTCTCACTCTCTCCCCCCTCTCTCTCTAACACACACACACATATCCAT
ATTATTGGGTACGGGACCATAATCAATCTATTTCACACACGCTAGTGCATAACAATATGGATTATGTGTATTATATTTGC
CACCACAACTGAGGGAATTAATTTCATGTAAATCGGCTAGCCACATCTCCAAGAATACGCGGAGG---------------
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------------------------------------ATGTGGCCCGCTTCCAAGTGCGTCTGCGTGCCGGCCACCCACGT
CGGGTCCTTCAAGTGCCGCTTCCACCGCACCAACTCCCAGGGCCAGGGAAGCCGCCCTTCTTCGCCCCCTTCACCGGCCG
CGGCCAACGCGGTGCCGCGGCACCCGGCCTCGCCGTTCTCGTCCTCCGGCACCGTCACGACCCAGTGACGTAGCCCAAGC
ATGGGCCTCGAGAATCAAGAACGCTTGACAACGGAGAGGGAAGGGAAGATCATATACATGTCATAAGAAATGGAGTTTAT
TTACCGCTCCCTCGATGTATTGTTTTCTTTGTTTGGAGATTGATTACCATCCATGAGTTAAGGTAAGGTTAATGTGATTG
AGTGACTTTGTCTAAAAATTAATTATTTGTTTTCTAATTAATGTGATTGAGCGATTTAAGGTAAGGTTAATTAATTTAGA
TTTGACCTTTAGAGATTGTTCGTGATTGATTCTACATTACTAAATAACTTGCGCCAGTATGGAAAGTTCTGATCTGTTCA
GATTTCTTTTGTTGTGTGAGAGGGTGACGCAAAAATAAACCGATGAAGTGGGGGGAGGGGATGAAAAAAATCTACGAAAA
AACCCAGCGAAGGTGGGAGGAGGTACCAAAAAAAACCATGGGAGGTGAGACGAAAAAAAACCTCCCATACTTCATGCAGG
AAGAGCACACATTCATAAGCTAACGGCTTCACAATGTGTTCTTGCTGATAGTAATTGAACAAAATGAAACGATGGACAAG
CAAATTGATTAAGGAACTCTAGGTAATACTTCATGCGGCATTGGCTCAAAAAGTTAATTTGTAAGTAACAAAAAAAGGCC
TAGAAGAATAGTTCTACCTAAATAAAGTTTACTGCTGCACATGAGCAGATCCACATGAAGCAGAGGGGAGGTGGAGCAGG
CCGGTAACCAGGGGAAGGAGCAGAGTGGGAGAAGATTTACACCGCCGTCTCCATTGGATATGGTGTCTCCGCCGCATCTG
TGGAGGCGCCGCGGCTCCGCCTCGGATGGTGCTCGTGGCTATGGTGAAGAGGAGGGGCGACGCATGGGCGAAGAGGCAGG
CGGTACTCGTGGCCAAAATAGTGGGTCGTTCGAGCTGCGGGAGGGAGGAGGGGATCGCCGGGAGGCGGCGAGATCGGTGG
GCGGCGGCGGCGGCGTCCAGGTAGGGAAGTCGAGGTAGGGCGCTGTGTTTTTAGGGGAATTGCTTGTGAAAATAACGTGC
CACAACGATGTAGCGAGCGGATCCCCTTAAAAAAGACATAGCGAGTGGATTCCCTTAAAACTGGTAGGAATGGACACGAT
TGATGACGTTGATAAATAGTGGTGAATGTTGGCCTAATTTACTATCATCATGCATGGAAACGAATCATCAAGAAAA----
----------------------------------------------------------------------------AGAA
TACTTCCTATTACTACGCTCATAGGAAGCTTCCTAATCTCTGCTACCAAACAGTTTCTGCCCAAACAAGAAAGAAAAGTT
ATGGACCTGATTCGGAAGGAAACAAACGTTATGAAGATTAATTAATTTAGATTTGATCTTTAGAGATTGATTGTGATTGA
TTCTTTTACATAAAGACATTACTAAATAATTTGTGTCAGTATGGAAAGTTCTGATCCGTTCAGTTTTTTTCGATGTGTGA
GAGGGTGAAGCAAAAATAAACCGATGAAGTGGGGGGAGGGGACGAAAAAAAATCTACGAAAAAAACCAGCGAAGGTGGGA
GGAGGTACCAAAAAAACCATGATAGATGGGACAAAAAAACCTGGAAGCGAGACTACCAACTGCTTCATTAGAGATAGAGA
TTTTCTTCTTTTAGTTACCTCTAATGTTTTTCCCT---------------------------------------------
ATGCGGTGAGAAAACACGGGAGAAGAGAAGAGAAGAGAAGTGGATGTGGGCAGAGCAAGAGGGCGACCGGCGGGCGGGAT
GTGTTGACCGTGAAACCGCGTGCGCGGGGTTCTCTCGCTCAGTCAATACTGCTCGTGGATCGATCCCAACACGATCACGT
GCGTGTGTGCATCTCATCAACCCATGTTGCATGACTTGACAGTTCACTCTGGTTACGTGGCGGATGTGAAGGTGCAGAAG
AGCAACGCCTATCATATTTGTGCAACGTGCACTAAAAGGAACGGTTGGACCCACGCGAGAAGAAACACGTTTTGGTAGAC
CCGATCACCCGCGGGTAGACATGGGACTTGCACGTTGCTCTAATCCTCTCCACTCATGTTCATATCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTGAAGGAAAAGAAAAGCCTCCGTCTCCTTTCTTTTTCA------------CTGGCA
GG------------TCCGTCTTCCTCCTCCGTCCACTCCTCTG----CTGCTGGCTCTGGCTGTATAAATATGCTCCCCC
TCCCCTCCCACCATCCCCAACCTCCCTCCTCCTATCCATTTCATCCACACCTCAGCCTCAGCTCACCTGCTCC-------
-------------GTCCGTCCTCCTTGGGATTGGGAGAGAAGAGACCACGCGAAACTCCTCTAAAAAATAAAAATGAAGA
GCAGGAGGCAGAGCGGCCGCGGAGGAGCCATGGTCGCCGACGGG------------------------------------
---------------------------------GGCTGCAAGATGGAGCGCAAGGACGTGGAGAAGAACCGCAGGCTGCA
CATGAAGGGCCTCTGCCTCAAGCTCTCCTCCCTCGTTC---CGGCCTCCTCCTCCTCTGACCACCACCTCAGACACTA--
----------TTCTTCCTCGCCGCCGTCCAGCAACAAGGTTAA-------------------------------------
-----------------------CTATTCTTCTGTGGGTAGG--------------------------------------
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-----------------------AGTACGTGTGTGATGTAGCAGAGCACCTACTTCTGAA--------------------
-----------------------------------------------------------------------------TTA
TGTCTGAAATTGGTTGGTGCTG----AGTGACGACCTTCACAAGAAAAGAAAA---------------TATCTCATCAT-
---CATTTCGGCACGTGTCTG----ATGGAATCAGCGGCAGT------GAAAGCGATCAGT------------------G
TAGTACCACTCACTCATTCTCTCCCCGACCGTCC---ATGGGATAAGCCTAGGCGT-----------------AACTACT
TC--------TGTGGACAAGAAATTTTTCAATGTTTG-------GTCGATCATTCAATCCATCCCCTCAATAATGCTTTC
AGCCACCAACCCA---AGATTGCA------GCAG----ATCACTCC-------TCTGATCCGATTCACATGCCT----CT
GCCACACAAAATCTGAATATAT---ATTT----------------------------GAT--------------------
---------------------------CATCTCTTTATTT---TACTG--------------------------------
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-----CTAGCTATTACCAGCAGGA--------------------------------------------------------
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-----------------------------------------------------------------------------TTG
ATTGATCGGCAAGTCT-------GACAACCACGACTTGGTTGTGTCTGTGCTTGCAGGACGCGGCGACGCAGCTGGACCA
GCTGGACAGCGCGGCGGCCTACATCAAGCAGCTCCGGGGCCGGATCGACGACCTCAAGCGCCGCAAGCAGGCCGCCCTCT
CCGGC---------------GGCACCGCCGGC---------TGCTCATCCTCCGTCTCCGCCGGCGACTACAAGGCACAG
------------ACGACTTCGCTGCCGGTGATCGAGGTGCGGCACCACGACGGAA---CTCTGGACGTGGCGCTGGTGAG
CGAGGTCGGGCGGCCGTTCCGGCTGCACGAGGTGATCGCCGTGTTGGAGCAGGAGGGCGCCGAGGTAGTCAGCGCCAGCT
TCTCCGTCGTCGGCGACAAGATCTTCTACACGCTCCACTCCCAGGCGTTCTGCCCACGCATCGGCCTCGACGCCCGCCGC
GTCGACCAACGGCTCCGCGGCCTCGCCGCAGCAGC------CACCATCTCGTCGTCGGTCCTCCTCACATGATATCTTTC
TTT------------GTTG-------------------------------TTTTTTCATCAATAGCGGCAGCTT------
-------------AGCTTAGCTTAGTACTGCTCTACTCTGCTAGTGAGTGAG--CTTCAGGTTTGTCTGAAATCTACTAG
TGCAGCCATGTACT-----TGCATATCTTCTCCTTTTTTGAATATGTGAGATATCTT-AGCTTTCAGAATGTTGGGTTGC
TTTCTGCTAAGAAGGCTTGAGAAA----CCGGGGAACATCAGACCGTGTTTGGTTGAGCCGAAGATTCTGGAAAAGCTGC
TGTGAGCCGTGAGCATAGATTAAAATCGCGGGCGAAACTGCC-------TGGCGTGATCTCTTCTTTGAAACGGCCACAC
GATCTGCATGGCTTGCGGAATCGCACGAGATCGCGGTGCTATCACGGAGCGATCGCTGCTTTGAAACGGCCAGGCGATCT
GCATGGCTTCTTGTTATGTT------------------------------------------------------------
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>chr3B_88
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-------ATAGTATCTCCATGCCCTGTCAGTCCAAATCTCAATTCCCACGGTATATTTTTGACATTTGTGGAGACA-GAG
GTCGATGTCATCACGTGATCATTGATTAATTAATGGGGTCATTGTTACTTC---TATGCGGTTGATAATCGACCGGTTTG
GAAGGCGTGGGTGCATGATTGCGAAAGGCTGCTAACAGCTTTTGTGATTTTATTTTTGTGGGACACGTAGGTTGATAGTG
ATTGTGTTTTTGCC-ACGTAGTGCCTATATAG--ACACGTGTGTACACGCGGGCTAGCAGCAACATTATCTGTCGCACGG
TTGCACTGTATATATACCTAGCCCACGTGATTGCACAGTTCGTCTTCACTTAACATTTCCTCCTCTTTTTTCGAAACAGC
GGCAAAAGATTTGTCTCACTCATTATTTAAGCAAAAGAGAATTGCTCATCTAATTAGCGAAAAACCAGATGAAAACTATC
AGAAACCACTGAGCGGCATACAAAA---------------------------------TACCACACACACACCTCTCCAA
AGAGGGTCTGCCGATACAGCACACGGGCGTCATCGTAATCACTCCTCCCCTAGAAGGCATGCATCATCGTCATCCCTAAA
CCCTGAGCAAATGACTCCGACTTAGCCGTAGATGATCGTCAACCCACCACACATTGTAGAGGAAACTGAAGTTGTATGAA
GATCAGTGCCAGAACTCGGCCACATGCACCTAGACAACGCATCTACGACTCTAACATAGAACTGCGAAGGAGAACTAGAC
AGTGCTGGCGCCGTGAATGATCACCAAACGGACCACATGTTGCCCGTCATCATATGCCACGAGGACCCCGCCACTTCACA
ACAAC---------------------------------------------------------------------------
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-----------------------------------------------------------------------AAAAAGGCC
AAGAAAATCCTATGGACACGTCCGAGAAGAGCTGACTACCTCAACCATTGCCACATCTCAGTCATCACTCACAGCCGCCA
TCGTCGGCACCGAAGTATAAACGCCAACACACACCAACATCTTCCATTGGTCGCCACCCGACGACGTTCGCCGCGCCTAT
GCTTCCGTGACTAGAGGGGGTGGTGAGTT---------------------------------------------------
-------------------------------------------------------------------GGGAGGGTGGTTT
GCGGCGGCGCCGGTTTCTCCCGGACCGCTCACGGGGAGCCAAACATAATAAAATTTACATCGTGGTGTTTGGACCACGGA
ACAACCACTAGCACAGCCAACATGCTACTGTCACTGCTCCCTTATTACCAAAGCCAAACTAACTTTGCTACTGACAGCCG
AAACGTTTTGTCGGCATTCTTGAATCGACCTGAAGCGTCTGACGGTAAAACCCATCGACGCATGACGAAATATCACAACC
TCACCGTTCAAGGAGGCAAACAGAATTCTACGCCAGGGATCCGTCGAATCAATGAATTTGAGGTGGATCGAAGCCCAGAA
GACTAGCTATCTCGACGCCGATGCGCCCGTCGAACATGTATTACTAGTAACCAAGAAAGGTTCTTGGTGAC---------
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-------------GTTACCTCTAATGTTTTTTGTTATGCCATGATTGATTAATACATTAGAAATTTCCCTCGAAAAAAAA
ATGCGGCGAGAAAACAGAGGAGAACACAGGAGAAGAGAAGAGGATGTGGGCAGAGCAAGAGGGCGACC----GGCGGGAT
GTGTTGACCGTGAAACCGCGTGCGCGGGGGTTTCTCACTCAGTCAGTACTACTACTTGTCG-------------------
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------------------------------------------ATCCTCTCCACTCATGTTCATCTATCTCTCTCTCTCTC
TATC----------AAA--------AAAGAAAAAAGAAAGATTCCATCACCTTTCTTTTTCA------------CTCGCT
TTTTCGCTGGATGCTCCGTCTTCCTCCTCCGTCCTCTCCCCTCCCCTCTGCTGGCTCTGGCTGTATAAATAAGCTCCCC-
TCCCCTCCCACCACCCCCAACTCAACCACCCTCCC----TCCATCCACACCTCAGCCTCAGCTCACCTGCTCCTGCTCTC
CTTGCCTCCCTCCATCCGTCCTCCTTGGGATTGGGAGAGAAGAGACCAAGCGCAACTCACCTCAAC------AATGAAGA
GCAGGAGGCAGAGCGGCCGTGGAGGAGCCATGCTGCTGCCGGACGGGAACCTCCAC------------------------
---------------------------AGCAGCGGCAGCAAGATGGAGCGCAAGGACGTGGAGAAGAACCGGCGGCTGCA
CATGAAGGGACTCTGCCTCAAGCTATCCTCCCTCGTTC---CGGCCTCCCCCTCCTCAGACCACCACCTCAGACACTA--
----------TTCTTCCTCGCCGCCGTCCAGCAACAAGGTACGTACAAGTAGAAAACTATTCTGCCTGCTACCTTAAGCA
TCCTCCTCTTCTCTTCTTCC------------TCTCCTCTTGTGTTGATTCGC---------CTC---------------
-------------------------------------------CCCAGCAAAAGGCACATCTTGGCAGATTGATTCATTA
GCCCAACTCACGCAGCTGT---------CAGG---ACACACAGCTGATTACCCACACTGTTACCGAGCA-----------
---------GCA---ACACGCAGTAGAGAATACGTG-CTTTCCTC-----------------------------------
-----------------------AAGAAAAAGAAAAAAAACATC------------------------------------
----------------------AAGTACGCGTGTGATGTG---GAGCACCTACTTCTATG--------------------
---------------------------------GTCCACTGAATTATG-------------------------------A
TGTCTGAAATTGGTTGGTGCTG----AGTGACCACCTTCACAAGAAAAGAAAA---------------T-TCTCATCAT-
---CATTTCGGCACGTGCCAG----ATTCGAT----------GCCATAGAAAGCGATCAGT------------------G
TGGTACCACTCACTCATTTTGCTAC---CCGTCT---ATCGGATAACCCGTCCCCAATAAT-------------------
--T---ACTTTCTGGTCAAGAAAATTTAAAATGTTTG-------GTCGATCAATCCATCCCCAATAAT--TTGTCATACA
AAATTATTT---------------TT----GAAG----ATCACTCT-------CCCGATTGGGTTCACATGGAT----CT
GCCATACAAAATCTGAATATAT---TTTT----------------------------GATT----------------GCA
AACGCAAGATGATGCCAACTAGTTGATCAGTTATTTTACTAGCCATTAGAGCATGGTTAATAGTATAACTAGTTGATGGC
TATATGATATTGTCAATGTCATCTATAGTTAACCTTATGCATGGCCAACAAGTACAATAGTAATATATGAAGATGTGCTA
CTTTCTTAATACATGGCTCACTTTTCATTCTCACATAGTGCCTATGAGCATGTGTTGCAGCTGGCTCTAATTCTATAGCC
GGCTCTTCTTCTCTCCACTTCGTATCATCAGAAAAATAATATTTTAACTCTTATAGCCTGCTTACAGAAGCTCAAGCTTA
TTGTACTTGCTCCTGCCAACAGGA--------------------------------------------------------
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-----------------------------------------------------------------------------TCA
ATTGGTCGCCTAATCT-------GACTTAGTTGTGTG----------GTGTTTTCAGGACGCGGCGACACAGCTGGACCA
GTTGGACAGCGCGGCGGCGTACATCAAGCAGCTCCGGGGCCGGATCGACGACCTGAAACGCCGCAAGCAGGCCGCCGTCT
CCGGC------------------ACCGCTGGC---------TGCTCATCCTCCATCTCCACGGGCGACTACAAGGGAGCT
CCTTCAACGGCCACGACAGCGCTGCCGGTGATCGAGGTGCGGCACCAGGACGGAA---CTCTGGACGTGGCGCTGGTGAG
CGAGGTCGGGCGGCCGTTCCGGCTGCACGAGGTGATCGCCGTGCTGGAGCAGGAGGGCGCCGAGGTGGTCAGCGCCAGCT
TCTCTGTCGTCGGCGACAAGATCTTCTACACGGTCCATTCCCAGGCGTTGTACCCCCGCATCGGCCTCGAGGCCGGCCGC
GTCGCCCAAGGGCTGCGCGGCCTCGCCGCAGCCGCAGCCG------TCTCGCCGTCGGTCCTCCTGACATGATCTCTTTC
TCT------------CTTT-------------------------------CTTCGTTGTTTTGCCATGGTGACAGATTAG
CTGATCTATTGGCAGCTTAGCTTAGTACTGCTCTACTCTGCTCATGAGTGAGAGCTTCAGGTTTGTCTGAAATCTACTAG
TGTAGGCACGTGCTTGC-------ATATCCTCC-TTCCTGAAGATGTGAGATATTTTTAGCTTTCAGAATGTTGGGTTTC
TTTCTACTAAGAAGGCTTGAAAACA-----GGGGAGCATTAGGCTGTGGTTGGCTGAGCCGAAGATTCTGAAAAAGCTGC
TGTG---------------------------------CTACCGCTATCGTGGCGTGATCGCTGCTTTGAAACGCCCACGC
GATCTGCATGGCTTGGGGAATCGCGCGAGATCGCGGTGCTATTGAGGCGTGATCACTGCTTTGAAACGGCCATGCGATCT
ACATGGCTTTTTCTTATGTTTGTAAATTAGGTGCAGATTTTCAGCTGTCCGGTAATTTCCCTCTCTATGTATAACTTGCA
GTTCAAGAGCGAAAAAACATTAGAATTCCATCATAATGTGAAATATATCATTAAAATAGAATAAATTATAGTAGGAAATA
GTCATGCAAAATGGACGTATCACCTTCTTGCTTGGCAAGCACTACAAAGTAGATCCTTGTCAACAGTGGCGGATTCAGGA
CCTAGGCCGGGAGGGGGGGGGGGGCCTGGGCCTGGGGCGTGAGGATGATTTACTTCATGGGCTGTAGCATATTGTGCACT
GTGTCAACACTGTACTAGTCTGGGGCCCTGGGCTTGGCCCAATCCTGGGTCCGCCCCTGCTTGTCAAAGATGACATCTCT
CACACCCAATACGTGATCACTCTTGATCAACTTGTTGAGATTGCACAACCCTACATGTCCAAGCCTTCTATGACAAAGCC
ATCCATAAGCAAATTTAGCAATAAGACATGTACGAACTCTTGATCCTTGTGAAAAAATGATAACGTAAATATCTTCAAGA
ACACGGGTAAGAACCATAGTACAATCATCTTTGCGAAAGACTTGACAATCAACTTAGCACACAAAATCCATAGTCAGTTA
GTTTTGCAATGGAAAGAAGATTGTAACCAAGTGATTCAACAAGCATGATATTTTGATTGAGTTGTGTCTAGATATGATCA
CTTTACCAAGACCGTATACCTTCCCTTCGGAATTGTCTCCAAAGGTGAAATTTCTTCTTGATCTATCATTCTTATGGAGT
TCTTGGAACCTGTATTTATCTTCGTTCATGTGGTGAGAGCACTCGCTATCGAGTACCCATTCTATTGCACCGGGAGAATT
GTGTTTGTGAGATCTTGACATGAGACACCTAAAGATACAATCACATTCATCTTCTCCATCGACATCATAGTCATTATGAT
TGCCTGCATTGTTAGTTTCTCCAACACCATGTTTTTCACTTATGCAATGAATTAGAAGAGCTGGTGAAAGGATATTGACA
ATGATAGGGACATCGCTTTTCTCCCGAGTGAGTGCATTGAGTTCATGCAATTGCTGCGCAAAGCTTGGATCGTTTTCGTC
CTTCATCTTCAAAACTGCCATAGCCTTATGGAGAAATTCATCAGGATTTTTGAGAGAATAATATGGAGAGACATAATAGC
ATTAGTCCGATTCCTTCCAAACAACATAAGCATTGTCAAAGTCAGTTAACTTTCTAAGTACATGATCATTAATGCCTCTA
ACAGTAAGTTGTGTAGCTCTAGCATTACATATCATATTAAGTTCTTCTTTAGAAGTAAGATGACTAGGATCCAACAGAGC
GAAAGTCATATTCAACCCCTAGGTGCAAATGAGCTCGGGATGAATGGTAAATTCAAAAAAAAAGATGAAGATACATTAAA
AAAAATTCTGAAAAACTTTCATGGCAAACATTGATAATTTTTTTGGATGCTTGCAAATTTTCATCATGAAAGAACATTCG
TGAAAGTGGTGGAAAAAATAACAAAATCATCACTCCAAAACGCTTTTGAAAATAGCACTATTGTAGCATTGATTTTGTTT
TTGTTTTCTTGCCACGACTTCCGTGAATGTTCTTTCATTATGAAATTTTGCAAGCATCCAAAAAAAATCGTCAATGTTTT
CCAAAGAAAAATTCAGATTTTTTTGAATTTACTGTTCGCCCGAGCTCATTTGAGCTCGGGCTGATAAACATCAGGTCCCA
AACAGAGGTACATATTGATTTTCAATGATATCAAGAAAGTCACGTTCCTCATATAAGCTAGGGTATTTAACTTTCCAAGA
TTGATAATTAGAGCAAACACATATAGGAACTCTGCATCGAAGACTATCCATTAGATACCGTACTCTCCTAGGCGGTAAAG
CCAAACCAAAGGGTCAATTTTCCTAGGATTCGCTAATGGAGGAACTTGTAGAGCAGACCAATGCTTGGATACCACTTTTA
GGATCGATAAGTATGTCTAGAGGGCAGGTGAATAGACTACTAAGCCAAATAATGGACTCTTTCTGAAGTTTTAATTTCTT
GTCCGATTATAGGCTTTTCTGGCAATCCATAGAGCATGCACACGTGCAAACCAAAAGTAATAGGCAACAGAAAGTAAAGA
CATGCAAGTGCAAACTAAAGAGGTGGACTTGAGATAATCACAAACACAATTGGCTTGGTGAAGACTTTTTACGTGCTTCA
AATAGTTGGGGGTATCTCACATCCATGTTGATGGATATCTTCCATCCATGAATGAATAAGATCAAAAGGGCCCCGTTTAG
GAGATGCCATGGAGGGACAGTCCAAGGACCATTGTTCAAAAAATCATCTGATTCAGCGATTTATCGTCAAATTAATCACT
ACTCAGGGGGTGACCGATATATAAGATTATGCCGACAAGCGATTTATCGGGAATCTACTGATATATCGGGCCTATTCCTA
GCAACATGTGTGCAAGAAATATATTTATTTTTGTTTTTTGGACCTAGTTATGTAATATGTATTCTTGTCCAATTTTGTTC
ATCATTGTAAAAGGATTGAAAGCCGAGTAATCAAGTTAGCACTTCTGTCCAATATTGTTTTTGTGTCGCATATGGGGAAT
CCATTGGTGCTCCCGGCAGGCGCGCGCTACTGCCCATGACATTGTTTTTTCAAATGTCAAAAAAAAATTCCAGCAAAAAT
TCTGCGTGTTCATTGTCACAACCAAATTTGTAAGCTAAAAAATTAAACATTTCCGCTTGTGCAAAAAAAAGAAAAAAAGA
AATGTTACCCCAAAATGTCACCCTAAATTTGTTTTCTTCACCGGTGAAACACCACTGCTCTATTTCGCATGAAAATTTTC
AAGGATGCTTGCGACACTAACACGAACATCTACAAGAAAAATTCAAGAATTTTTTAAAATATTTCCTATATTTTTTGTTT
ACTATTCACGCGGGAGCGCGCGCTCCCGGGAGCCAAAACGTCATTCTCGTTGAATATAGCATATTTTAGTGCTCGGAACC
CGGGATAGCAATCTTGGGGTGGAGTAATAGTAGTACATGCAGTTGGTTTAATACTCTACTTATGCCAGACATAAAGCCTA
TGTGAAATTATGCCATGAATATCATAGTCATACTCGTTGTTATTCTTGTCAGTTGTCCAACTTTAATTTGTGACCATGTC
GTTTGCCTTCTTTTCTAGTGAGATACCTCGTGTGAACATATGCCCCTGATCCATTCTTCCATCGATAAAAGCATACAAAA
TTGCTCTTTCATATTTGCTTTTACTTTTACTGCTCAATTAGCTATCGATTTGTTTTTAACCTTTACAGTTAGGTACAAGT
TGGGTTCCAACTGCATAGAGTAACATTGTTTAGAGTCTGCGTTAACTGAGTCAGACTAAACCGAGCATGCACAGATTCCA
AAAATGATGCAAACTTGCAAAGTGATGGCTAGCCCAAAGCATTTTTGTGATAGTGATGTTACGATATGTATAATGGTGGC
ATGTGGATACAGATGTCTCATGACAAAAAATAGCTTCAAGCACATATATTGATTTTTTTTTCCCCAATGCAAACTACTAC
TAGTGGGCCTCATCAAATAATAAAAAGTAGAGTCCCACTACACATGCATCCATATTCTTCACTTTAACTTTTCCAGCTTT
ATGGACCAGACCAAAATTTTCTTTTCAAGCACCCGCCTCCGTAGGGGATCACGCCGCTCCATCCAAACATACTTTTACTG
ACATCGCCGATCCTACATAGCATATGAGACATCACCCTGAGGTTATGCATTGTACATGCCCTTTATACTAGAATTTGCAA
CCTGTGTACATGGTCTGGACCTCCGGGGCTGAGCAAGGTACATGGTACATGGTCCATGGTCCAGAGCGTGGTGTGGATGG
CCCTGGTAGTACATGGTCCAGAACGTGGCGTGGATGGCCATGGCAGTACATGATGCACTTAATTTGGCATGCACCTCCCT
TGTTCTGGGTCCACAACGTGGTCTGGGGCCTGAGCATACGGCCACCAGAAAAACGTGCGTGGGTTTTGTTTCCCAAGAGT
AAACACTGTAGCT-------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------
>chr3B_999
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-----------------------------------------------------------------C------AATGAAGA
GCAGGAGGCAGAGCGGCCGCGGAGGAGCCATGGCGGT---GGACGGG---------------------------------
---------AGCCACACCCACACCACAAGCAGCGGCTGCAAGATGGAGCGCAAGGAGGTGGAGAAGAACCGGCGGCTGCA
CATGAAGGGACTCTGCCTCAAGCTCTCCTCCCTCGTCC---CCTCCTCCTCCTCCTCCGACCACCACCTCCGCCATTA--
----------TTCTTCCTCGCCGCCGTCCAGCAACAAGGTAAA-------------------------------------
-----------------------C--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------AAAATCGTCAAAAGATC------------------------TCTTCACAATAATCCTCTC
ACCCACCTACTGACCTACACAAGATT----GCAG----ATCACTTC-------TCTGAGTCGAAGCACATGCCTTTCTCT
TCCTGACAAAATCTGAATTCGT---TTTTTAATTGTGCGTGGATCACTACACTTATTGATC----------------ACA
AGTACAATATT------ATCAGTGGATCATTTCTTTATTTTACTACTA--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----CTAT--------TATACA---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------CTAAAAAACACAAGATTGTTTGTGTGTGTCTATGCAAATTCA-------TC
AATTCTCGCATGGCCT-------GACGACGACGGCTTTGGT---TGTGTCTGTGCAGGACGCGGCGACGCAGCTGGACCA
GCTGGACAGCGCCGCGGCCTACATCAAGCAGCTCCGGGGCCGCATCCACGACCTGAAACGCCGCAAGCAGGCCGCCCTCT
CTCTCTCCGGCGGCACCGG---------CGGC---------TGCTCATCCTCCGTCTCCGCCGGCGACTACAAGGCACAC
ACT---------ACGACGTCGCTGCCGGTGATCGAGGTTAGGCATCAGGACGGGA---CGCTGGACGTGGCGCTGGCGAG
CGAGGCCGGGCGTCCCTTCCGGCTGCACGAGGTGATGGCGATGCTGGAGCAAGAGGGCGCGGAGGTGGTCAGCGCCAGCT
TCTCCGTGGTGGGGGACAAGATCTTCTACACGCTCCACTCCCAGGCGCTCTGCCCACGCATCGG----------------
--------------------------------------------------------------------------------
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>chr3A_999
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-----------------------------------------------------------------C------AATGAAGA
GCAGGAGGCAGAGCGGCCGCGCCGGTGGCCTGGCCGT---GGACACCACAAGCAGCGGCTGCGGCGGCGGCGGCGTCGTA
GGGGGAGGAGGCT---------------GCAGCGCCAGCAAGATGGAGCGCAAGGACGTGGAGAAGAACCGGCGGCTGCA
CATGAAGGGACTCTGCCTCAAGCTCTCCTCCCTCGTCC---C------GCCCTCCTCCGCACACCACCTCCGCCACTATT
---CTTCTACTTGTTCCTCGCCGCCGTCCAGCAACAAGGTCTGTCCCAAAATAAGTGTCTCAAGCATCAT----------
--------------TCTTCTCTTCTCTTTTGGTCTCCTCTTCTGTTGATTCGC---------CATCAAAAGAAAGGTACG
CGCGTAAAAAACTATTCATCTCCTGTTGATTCACCAGCACCAGCAAAAGGC-------------------AGATCGATTA
GCGCAACTCATGCCGCTGT---------C------------------------ACACTGTTACCGAGCACTAGTAACATA
TACTACTATGTA---GTACACAGTTGAGAATACCGT-ATTTTTAC-----------------------------------
-----------------------ACAAAAGAAAGGCGTCACTGTTGCTCATAGCTGCCTGTACACATAATATACTAGACC
TGTTTTCTTTCTGAAAACAAATACGTACACACATATCTACTCCGGACTAATACATATGTACACATAATATACTGTATTTG
TTTCTGAAAACAAATACATACGTACACACATAAGTCCACTCAAGATGAATTATTGTGC----------------------
--TCTCAAATTGGTTGGTGGTGGCGACGTGCACACCAAACGTGCTACTAGTATA--ACTCCACCAAGATTTT------T-
----ATTTCCACACGCGGCAGATTCATTGATTCGCTCATCAGATTCAGACAGCGATTTCATCAGTCTACTATACTACAAC
TAGTACCACTCACTCATTCAC-----------------------------------------------------------
--------------------------------------------------------------------------------
--CC--------ACCTACACAAGATT----GCAGGCAGATCACTCCTCTGAAATCTGAATCGAGGCACATGCCTTT---T
GTCAGACAAAATCTGATTTCTC---TTTT----------------------------GTA--------------------
--------------CCAATCAGTGGATCATTTCTTTATTTTACCACTA--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----CTAGCTAGTAGC----CA---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------CTAGAAAGGACAAGATTGTTTGTGTGTGTGTGCAGAACTGCAAATCAGTGG
ATCAATCGCACCATCT-------GACGACGACGGCTTTGCT---TCTGTGTGTGCAGGACGCGGCGACGCAGCTGGACCA
GCTGGACAGCGCGGCGGCCTACATCAAGCAGCTCCGGGCCCGGATCGACCACCTCAAGCGCCGCAAGCAGGCCGCCCTC-
--------------ACCGG---------CGGC---------TGCTCATCCTCCGTCTCCGCGGGCGACTACAAGGGAGCT
CCTTCAACTTCA---ACGGCGCTGCCGGTGATCGAGGTGCGGTGCCAGGACGGGTCGGCGCTGGACGTGGCGCTGGCGAG
CGAGGCCGGGCGTCCCTTCCGGCTGCACGAGGTGATCGCGGTGCTGGAGCAGGAGGGCGCCGAGGTGGTCAGCGCCAGCT
TCTCCGTCGTGGGCGACAAGATCTTCTACACGGTCCACTCCCAGGCGCTCTGCCCCCGCATCGGCCTCGACGCCGGCCGG
GTCGCCCAGAGGCTCCGCGGCCTCGCCGCGGCCGCAGCCACCGTCTCG--------------------------------
--------------------------------------------------------------------------------
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>chr3A_1032
GAGCA---------------------------------------------------------------------------
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---------------------------------TGGTGCCGGACGGG---------------------------------
---------GGCT---------------GCAGCGCCAGCAAGATGGAGCGCAAGGACGTGGAGAAGAACCGCAGGCTGCA
CATGAAGGGCCTCTGCCTCAAGCTCTCCTCCCTCGTCC---C------GCCCTCCTCCGCACACCACCTCCGACACTATT
---CTTCTACTTCTTCCTCACCACCGTCCAGCAACAAGGTCTGTCCCAAAATAAGTGTCTCAAGCATCAT----------
--------------TCTTCTCTTCTCTTTTGGTCTCCTCTTCTGTTGATTCGC---------CATCAAAAGGCGCTTCTT
TTCTTCTTTGCTGAAGAAAAGAAAAGAAAAGAAAACATGAATAGTATGTGTT----------------------------
---------------------------------------------------------------------CTACTGAAGAA
AAG-------------AAAAGAAAGGAAAACATGAATAGTATGTGTTTTGCTGAAGAAACGAAAAGAAAAGAAAACATGA
ATAGTATGTGTTTTGCTGAAGAAAAGAAAAGAAAAGAAAACATC------------------------------------
----------------------AAGTACGTGTGTGATGTAGCAGAGCACCTACTTGTGTG--------------------
---------------------------------GTCCACTGAATTATG--------------------------------
--TCTCAACTTGGTTGGTGGTC----AGTCACCACCTTCACAAGAAAAGAAAAAGTGCTCCACCACAATATCACATCATC
ATGCATTTCGGCACGTGCCATCC--------------------------AAAGCGATCGGTGTGGTAGGAGGG-----AG
GAGTACCACTTACTCATTTGCTACCCGTCC-------ATCGGATAAGCCATCCCCAATAATTACTTTGTGCTCAATTTTT
TCTTTCACTTTGTGGTCAAGAAAATTTACTAAAACGTTTGGCCAGTCAATCAATCCATCCCCAATAAT--TAACCCCTTG
AGCC--------ACCAACCCAAGATT----GGAG----ATCACTCT-------CCTGATTCGATTCACGTGCCT----CT
GCCATACAAAATCTGAATACGTCCATTTTTCATTGCGAGTGCATGAGGATGCCA--------------------------
--------ATG------ATCAGTGGATCAGTTAGTT----------TA--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----CTAGCCATTGCCAGCAGGA--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------TCA
ATTGATCAGCTGATCT-------GACTTGATCGTGCC----------GTGTTTGCAGGACGCGGCGACGCAGCTGGACCA
GCTGGACAGCGCCGCGGCGTACATCAAGCAGCTCCGGGGCCGGATCGACCACCTCAAGCGCCGCAAGCAGGCCGCCCTCT
---------------CCGGCGGCACGGCCGGC---------TGCTCCTCCTCCGTCTCCGCCGGCGACTACAAGTCACAG
A------------CGGCCTCGCTGCCGGTGATCGAGGTTCGGCACCAGGACGGGA---CGCTCGACGTGGCGCTGGCGAG
CGAATCCGGGCGGCCGTTCCGGCTGCACGAGGTGATCGCCGTGCTGGAGCAGGAGGGCGCCGAGGTGGTCAGCGCCAGCT
TCTCGGTCGTCGGCGACAAGATCTTCTACACGGTCCATTCCCAGGCGATGTGCCCCCGCATCGGCCTCGAGCCCGGCAGG
GTCGCCCACCGGCTCCGCGGCCTCGCCGCAGCCGCAGCCGCCACCGTCTCGTCGTCGGTCCTCCTGACATGATCTCTTTC
TTT------------CTTGTTTTTGCCATGGTGACAGACCAGCCGGTCTATTTTTTCATCAATCGCAGCAGCTT------
-------------AGCATAGCTTAGTACTGCTCTACTCTGCTCGTCATT--GAGCTTCAGGTCTGTCTGAAATCTACTAC
TAGCGTAGTCATGTGTACCTGCATATCTCCTCC-TTTGTGAAGATGTGAGACATTTT-AGCATTCAGAATGTTGGATTTC
TTTCTACTAACAAGGCTTGAGACA----TGGGGGAGCATTAGCCTGTGTTTGGTTGAGCCGAAAATTCTGGAAAAGCTGC
TGTGAGCCGCCAACATAGATTAAAATCACGGCTCAAACTGCCGCTTTCGCGGCGTGATCGCTCCTTTGAAATGACCACGC
GATCTGCATAGCTTGGGGAATCGCGCAAGAT-------------------------------------------------
--------------------------------------------------------------------------------
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>chr3D_1056
--------------------------------------------------------------------------------
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-------------------------------GCAGCGGCAAGATGGAGCGCAAGGACGTGGAGAAGAACCGGCGGCTGCA
CATGAAGGGACTCTGCCTCAAGCTCTCCTCCCTCGTGC---C------CGCCTCCTCAACCCACCACCTCCGCCATTATT
---CTTCTTCCTCTTCCTCGCCGCCGTCCAGCAACAAGGTAAA-------------------------------------
-----------------------CTCTTGTCTTGTCTTCTTCGTCGACTTCTCTTAACTTGGCCC---------------
-------------------------------------------AAAAAGGC-------------------TGATTGATTA
GCCCAACTCATGCCGCTGCCTGTCAGGACAGG---ACACACAGCTAATTGACCACCCA-----CGAGCACTAGTAAAACA
CAT-------------TATACAGTAGAGAATACATACAGTATA---TTTACAAAAGAAACAAGAAATAAAAG--------
----------------------------------------------------GCTGCCTGTACACATGATAGACTACAAC
TGTTTTCTTTCTGAAAACAAAAAAATACGTGTGTGATGTG---AAGCACCTACTTCCCTG--------------------
---------------------------------GTTCACTGAAGATGAATTATTGTGCTCTC-----CTCTCTGTATGTC
TGCCTGAAATTGGTTGGTGGCC----------------ACGTGCTACTAGTATA--GCTCCACCAAGATTTT------T-
---TATTTCCACACGTGGCAG----ATTGATTCGCTCATCAGACAGCAGTGTGC-----------------TAGTACAAG
TAGTACCACTCACTCATTCGCTCCACGTCCCGGCCGAATCGGATAAGTCTGAACAA-----------------AACTATG
TAT---ACTTCGTGGTCAACAAAATCCTCAAAAGATG------------------------TGTTCACAATAATCATCTC
ACCGACCTACT----TACAAAAGATT----GCAG----ATCACTCC-------TCTGAATCGAGGCACATGCCTTTCTCT
CTCTTCC--------ACACAAA---ATCTTCATTTTCTATACATCAGTA--------GATCGACCATCTTGATTGAAACT
AGTACAATATGATGGCAACCAGTGCATCAATTATTTATTTTACCACTA--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----GTAA--------TAGCCACTAAAAAGCGGG---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------AATGGCTAGAAATCAGTCAGCTGAATTTTTGGTTTGAGGTCAATCGATTTGTGCACCGTTTGATGCAAAA
TCAATGGCCCACAGTTTTCTTCAACCTCTGGACACATCTCCTTTCTTCATTCATTTAGAAATCGATTGACGCCGAATTCG
CATCAGCTGACTGATGTGCAGCTAAACTGCTAAAAAGCACAAGATTGGTTGTGTGTGTGCGCGCGCGCAA----------
-----------GCACGATCTGACGACGAAGAG----TTGGT---TGTGCCTATGCAGGACGCGGCGACGCAGCTGGACCA
GCTGGACAGCGCGGCGGCGTACATCAAGCAGCTCCGGGCCAGGATCGAGGACCTCAAGCGCCGCAAGCAGGCCGCCCTCT
---------------CCGGCAACACCGTTGGC---------TGCTCATCCTCCGTCTCCGCCGGCGACTACAAGTCACAG
------------ACGGCAGCGCTGCCTGTGATCGAGGTGCGGCACCAGGACGGGA---CGCTGGACGTGGCGCTGGCGAG
CGAGGCCGGGCGTCCCTTCCGGCTGCACGAGGTGATGGCGGTGCTGGAGCAGGAGGGGGCCGAGGTGGTCAGCGCCAGCT
TCTCCGTCGTCGGCGACAAGATCTTCTACACGCTCCATTCCCAGGCGCTCTGCCCCCGCATCGGCCTCGACGCCGGCCGC
GTCGCCCAGAGGCTCCGCGGCCTCGCCGCCGCAGC------CACCGTCTCG-----------------------------
--------------------------------------------------------------------------------
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>chr3B_1062
--------------------------------------------------------------------------------
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-------------------------------------GCAAGATGGAGCGCAAGGAGGTGGAGAAGAACCGGCGGCTGCA
CATGAAGGGCCTCTGCCTCAAGCTCTCCTCCCTCCTCCCCGC------CTCCTCCTCAGACCACCACCTCCGCCATTATT
CCACTTCTTCCTCTTCCTCGCCGCCCTCCAGCAGCAAGGTACGTCAAAAACTAC--------------CTACCTTAAGCA
TCCTCCTCCACTTCTCTTCTCTTCTCTTGTCGTGTCCTCTTCTGTTGATTCGGCAGATTAGAGCAT--------------
--------------------------------------------------------------------------------
--GCAGCTCATGCCGCTAATTCAC------------------------------CACTATTACCAAGCACTAGTGACATA
CATACATACATACATACATACAGTAAAGAATACAGT-ATTTGCCTTTCTCTCTGTCTTTATAATAAAGAATACTCATAGA
TGTGCGGCG---------------------------------------------------------TAATATACTCCAGT
-------TTTCTGAAAACAAAAACACACACATAAATATAAATATA----CTTCTTCCCCG--------------------
---------------------------------GTCCACTC------AATTATTGTGCTCTCTCTGTCTCTCTATCTTTC
TGTCCGAAATTGGTTGGTGGTGGCGACGTGCACACCAAGATAGTGAG---------------------------------
---TATTTCCACACGTGGC-------------------------------------------------------------
--------------------------------------------------------------------------------
--------TTTGTGGTCAACAAAATCCTCTAAAGATC------------------------TGTCGACAATAATCATTTC
ACCCACCTACTCT---ACACAAGATTGCAGGCAG----ATTAATCC-------TCTGATTCGAGGCACATGCCTTTCTCT
TCCTCACAAAAA---ACTTAAT---TTCTTCTGTGTGTGTCTATCAGTG--------GATC----------------ACA
AGTACAAGATT------ATCAGTGGATCATTTTCTT----------TA--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----TTTTACTACAAGTAGCCACTACTAGCTACTCCCTCTGTTCCTAAATATTTGTCTTTCTAGACATTTCAAATGACT
ACTACATACGGATGTATGTAGACATATTTTAGAGTGTAGATTCACTCATTTTGCTTCGTATGTAGTCACTTGTTGAAATG
CCTAGAAAGACAAGTATTTAGGAACGGAGGGAGTGGAAAGCACAAGATTGTTTGTGTTTGTGTGTATGTTCGTATGTAGT
CACTTGTTGAAATGCCTAGAAAGACAAGTATTTAGGAACGGAGGGAGTG-------------------------------
--------------------------------------------------------------------------------
--------------------------------GAAAGCACAAGATTGTTTGTGTTTGTGTGTATGTGCA----------A
ATTGATCAACCGCATGATCTGACGACGACGACGGCTCTGCT---TCTGCCTCTGCAGGACGCGGCGACGCAGCTGGATCA
GCTGGACAGCGCGGCGGCCTACATCAACCAGCTCCGGGGCCGCATCGACGACCTCAAGCGCCGCAAGCAGGCCGCCCTCT
---------------CCGG---------CGGC---------TGCTCATCCTCCGTCTCCGCCGGCGACTACAAGCCACAG
ACT---------ACGGCGTCGCTGCCGGTGATCGAGGTTAGGCACCAGGACGGGA---CTCTGGACGTGGCGCTGGCGAG
CGAGGCCGGGCGGCCCTTCCGGTTGCACGAGGTGATGGCGGTGCTTGAGCAGGAGGGCGCTGAGGTGATCAGCGCCAGCT
TCTCCGTGGTGGGCGACAAGATCTTCTACACGGTCCACTCGCAGGCGCTCTGCCCCCGCATCGGCCTCGACGCCGGCCGC
GTCGCCCAGAGGCTGCGCGGCCTCGCCGCAGCCGC------CACCGTCTCGTCCCTCC----------------------
--------------------------------------------------------------------------------
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>chr3A_1840
--------------------------------------------------------------------------------
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-------------TCT-------GACGACGACGGCTTTGGT---TGTGTCTGTGCAGGACGCGGCGACGCAGCTGGATCA
GCTGGACAGCGCGACGGCCTACATCAAGCAGCTCAAGGCCCGCATCGACCACCTCAAGCGCCGCAAGCAGGCCGTCTTCT
---------------CTGG---------CGGCACCGCTGGCTGCTCATCTTCAGTCTCCGCCGGCGACTACAAGGCACAG
A------------CGGCCGCCCTGCCGGTGATCGAGGTTCGGCACCAGGACGGAA---CGCTGGACGTGGCGCTGGCGAG
CGAGGCCGGGCGGCCGTTCCGGCTGCACCAGGTGATCGCCGTGCTGGAGCAGGAGGGCGCCGAGGTGGTCAGCGCCAGCT
TCTCCGTCGTCGGCGATAAGATCTTCTACACGCTCCACGCCCAGGCGCTCTGCCCCCGCATCGGCCTCGAGGCCGGCCGC
GCCGCCCACCGGCTCCGCAGCCTCGCCGCAGCAGC------CGCCGTCTCGTCGTCGGTCCTCCTCACATGATCTCTCTC
TTT------------GTTG-------------------------------CTTTTTCATCAGTCGCGGCAGCTT------
-------------AGCTTAGCTTCGTACTGCTCTACTTTGCTCGTGAGT--GAGCTTCAGGTTTGTTTGAAATCTACTAG
TGTAGCCATGTA--GTACCTGCATATCTCCTCC-TTTGTGAAGATGTGAGATATTTT-A---------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------
>SNPs
S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS---S------SS-S-------S-------------------S---------S------------S----S---
-----------------------S---------------------S----SSSS---------------S----------
-----------------------------------S---S---------S------------------------------
-------------SS----------------SSS------------------------------S------S--------
-----------------S---------S----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------SS--SS------------S----S-S-------------SS-S-SSSSS-SSS-S---
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-------------------------------------------------S------------------------------
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---------S---------------S---------------------------------------------S--------
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>forward_3550
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----------TCCATCCCTCCTCCTCGATC--------------------------------------------------
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>reverse_6822
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---------------------TTGATGGAAGCGATGGCTGT---------------------------------------
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