>input_sequence_54520
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----------------------------------------GTACATGTGTCTGCAGCCGCACCAGTTATAGCATTGCATA
AGCTGACTTCTCTATCAATGTCACATGGACAACGAGGAACACCGCCGCCACATCGCCACCTGCCTCGTCAAAGGCGTTTA
CGTCCACGAGAAGGAGAGAGCAGCGATGAACAGGACGGAGAAGCTCGCGCCGGCGTGGTGGGAAAGCTTTGGCTTCCGCC
TAGAGAAGGAACTCAGAGAGCAGATATCCTTCTCCATCTCCGACACCATCTCCGACACCATCTTCAACACCATCGCCGAC
AACATCTACGGTGCCATCTTCGGCACCAACTACGGTGCCATCTCCGACACCATCTACGGTGCCATCTTCGAGTACGTGCC
CAGCCCAGAGCCCGGCGCGCGCCGGCACCGGTGCG------CTCCACGGTATGTCGTCGCCTTCAGGGGCACCATGCAAT
TCGCAAGCACCCCGATAGGAAGGTGCCGGCGAAAGACTTCTGGCTTGACGCCAATATAGTGGCCAACACAATGAACGACC
GCACGCGCTACAAGCTAGCTCGAGGAGCGGTCGAGGAACTTATGGTTGGCCAAACCCCAGACCCGAAGCGCTGCCTTGAC
GTT------------TGGCTCGCCGGGCACTCTCTCGGCGGTTCGCTGGCGCTGGAAGTGGGGCGGGACATGATGGTGCA
GGG------GCTCAACCTGCCGACCTTCCTCTTCAATCCGCCGCAGGTGTCGTTGACACCACTACTCAACTTGCTGAACG
CGACGGAGGTGGCCAAGTGGGACCTGCACTTCACGAGTTTCGTCTTGAAGGTCGCTGTGGGACATTTCTCCGAATCCCGA
CGGGACCACATGGAAGAGCTGTTCAGCAAGCTTGAACCGTGGGTGCCGAATCTGTACGTGAACGAGAATGACTGGATCAG
CCAGGGCTTCATCGACTACTTGGAGTTGCGGCAGAAGTTCCAGGAGCGATTCCCCAATGCTGGCGCCGTGTGGATGACAA
TGTCGTACCGAGACTTGGTCCACCGCCTGCTGGTCGACGGTAAGGAGCA--------------GCCGCACCTCCTGCCAT
CGGCGACGCTGTGGAAAAGCAGGCTCCATCCCCGTGA---------GCACAGTCTCGACCAGTTGTTGAAACCGGACAGT
GAGCTCGGATTGGGCGCCACGCCTTATAGGTACACTCTACCTGAAGCGTAAACTACTTCTAGTTTTATGCCGGC------
-------------TAGCTGTTGCTCCTTGTCGAAGATTGTGTACCTTT--TTTTTTTGAACAAATGCAGTTTATTGCCAT
AGCGTTTTCTGG---TTAAACCACATGAAAATGGTGATATCAGATACCAGTTTAAAAAAAGAGAATTGTAACTT------
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>chr5B_1_TraesCS5B01G402500
TTGAAAAAACTGTATTTTAACACTTTTGTAATTTTGAATTCAAAAGTCGTTTGAATATTTCCGATGAACAAATCCAAAAT
TTCAGAGATTTTCCGAAAATCGGATATTCCGGCCACGACCAAAAAATAAACGGGATCGAAAAAGAAAAAACTTCGCACCA
GTACACGTCTCGTGAGTGTAATTTAGGGAGACAGAAATCAGACTGCCTCCCGATCAACCAAGCCAACCCTTCGTCTTCAG
TCTTCACATCTCCCGCATGGCTGCACGCACGCCGGCACGCGCCCGTTAGTTCGGATTACTGCGGCCACGTGGTCGCCTCC
ATATTTCACGCCTCCTCTGCGGGCGGCCGCCGCCGCATATCGTCTTCTTCTGCGAGCCCTCGTCCCTTTCCTCGGCCATG
CTAACGGCCATGCACTCCAGAACGTGCTCCTCTTCTTCGGCCGTACCGCCCCGTAGCAGCCCGCGACTAGGGAAATTAGA
TGTGTAGTGCCTATTTCCGAAGCTATGAATCGACGGAATGCATAAATCAACCAAAACACAGCATCCCAATCGACCAGGAA
GAAATCAAAAACAATAAGACTAGTACTCTGAGTTGAGTGATGAACCACCAATCCGCCATCGTACCAAGACAGAGGAGGTG
GGATAGATTGCGGTCAGTAGTCTCTCTTTTTTTCCGGGGAGCGGCCTGTACTGACCAGCACGCGGCCGTGGTGTGACTGT
GTGAGAGCGATGTGTGCCCCGGCGGGAGATGCGGCTGGATGTGCAGCGAGGCGGCAGCGAGGTTGACACACGCCCGGTCT
AGGTCAAGCGCGCGGGGGGAGGGTGGTGGCCGGAGCACGCCGGTATATAGGGATGCAACAGCGAGTTCGCCGATCGCCTT
TTCTTCTTCCAAGTATAACGAACAGACCGACCGCTGATGGGCTGAAATCAACGGTTGAGGTTGATGATTATATACTGCTC
CCTCACCTCCGTAGCAGTACAGGGTACCACACCGAATCACGTACATGTGTCTGCAGCCGCACCAGTTATAGCATTGCATA
AGCTGACTTCTCTATCAATGTCACATGGACAACGAGGAACACCGCCGCCACATCGCCACCTGCCTCGTCAAAGGCGTTTA
CGTCCACGAGAAGGAGAGAGCAGCGATGAACAGGACGGAGAAGCTCGCGCCGGCGTGGTGGGAAAGCTTTGGCTTCCGCC
TAGAGAAGGAACTCAGAGAGCAGATATCCTTCTCCATCTCCGACACCATCTCCGACACCATCTTCAACACCATCGCCGAC
AACATCTACGGTGCCATCTTCGGCACCAACTACGGTGCCATCTCCGACACCATCTACGGTGCCATCTTCGAGTACGTGCC
CAGCCCAGAGCCCGGCGCGCGCCGGCACCGGTGCG------CTCCACGGTATGTCGTCGCCTTCAGGGGCACCATGCAAT
TCGCAAGCACCCCGATAGGAAGGTGCCGGCGAAAGACTTCTGGCTTGACGCCAATATAGTGGCCAACACAATGAACGACC
GCACGCGCTACAAGCTAGCTCGAGGAGCGGTCGAGGAACTTATGGTTGGCCAAACCCCAGACCCGAAGCGCTGCCTTGAC
GTT------------TGGCTCGCCGGGCACTCTCTCGGCGGTTCGCTGGCGCTGGAAGTGGGGCGGGACATGATGGTGCA
GGG------GCTCAACCTGCCGACCTTCCTCTTCAATCCGCCGCAGGTGTCGTTGACACCACTACTCAACTTGCTGAACG
CGACGGAGGTGGCCAAGTGGGACCTGCACTTCACGAGTTTCGTCTTGAAGGTCGCTGTGGGACATTTCTCCGAATCCCGA
CGGGACCACATGGAAGAGCTGTTCAGCAAGCTTGAACCGTGGGTGCCGAATCTGTACGTGAACGAGAATGACTGGATCAG
CCAGGGCTTCATCGACTACTTGGAGTTGCGGCAGAAGTTCCAGGAGCGATTCCCCAATGCTGGCGCCGTGTGGATGACAA
TGTCGTACCGAGACTTGGTCCACCGCCTGCTGGTCGACGGTAAGGAGCA--------------GCCGCACCTCCTGCCAT
CGGCGACGCTGTGGAAAAGCAGGCTCCATCCCCGTGA---------GCACAGTCTCGACCAGTTGTTGAAACCGGACAGT
GAGCTCGGATTGGGCGCCACGCCTTATAGGTACACTCTACCTGAAGCGTAAACTACTTCTAGTTTTATGCCGGC------
-------------TAGCTGTTGCTCCTTGTCGAAGATTGTGTACCTTT--TTTTTTTGAACAAATGCAGTTTATTGCCAT
AGCGTTTTCTGG---TTAAACCACATGAAAATGGTGATATCAGATACCAGTTTAAAAAAAGAGAATTGTAA-CTTCTCAT
TAGTTATAC-GTTTCTCCATTTTATCAATTTTATGTTGTCCTGTAAAATGTTTG-ATTTGTAAATATATTCTTGAACCTT
GGGTTCAAAGCTTCTAAGCCTCACTGTGAACTATGCGTTTCTCTGGCATTCCTTTCCCCCCGATCTCCCCCACCTCTGTA
AATGCATCTATAATTTAACCACACTAATGTCCAGATTTTTTTGCTTTTTGTGAGAATTCCCAGT----------------
---ATATAGCATCACA---GAGTTCACAAAAAAATTGATCTATTACTAATCAAACAAAATAGAAAATTTGGATCCATTCT
TGATCCCAAAAATATTCATACATTCATCATAATCAAACAAAAATAATCATAATAGTCATCATGGAAAAAACTACTACATC
CTACTCACTCCGTTCCCAAATATTTGTCTTTCTAAAAATTTCAACAAATGACCACATACGAAGCAAAATGAGTGAATCTA
CACTCTAAAATATGTCTACATACATCCGTACGTTGTGTCCATTTGAAATGCCTAGAAAGACAAATATTTGGGAATGGAGG
GAATACAAAATATCCACGCATTCAAAATCAAACCAGAACATCATATTTGTCATCATGAAAGGAAAAATAGAACCATTCCC
GATCGAACGAAAATATTCATACATTACCAATCAACAAAATATTCGAATCCACTACATCCAATGAAGATGGGAGGACCATA
TCTTAGCCAAACAATTTTTCTACCCTCCATACGGGCATAA----------------------------------------
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------------------------------------------------------------------------------TT
TACTAAAGAATTACTAACTATATTCTGACTATGGCTAACATGATAATACAAGTTTGACAAGAG-CCATTAGTGAGTTGAT
CTCAAGCATTAAAGAGGAATAGATAGACCTATCATGGTCACCATTATGGGCCTTCTTCACCACCTCCAAGGCATCTACCT
CAATGATCGCTGACACTTCACACCATTGCAAGCCTTAAAAAAACCC--TTCACACCATTGCAAGCCT-AAAAAAAAACTT
CACGCCATTGCAATGCAAGTG
>chr5B_1053
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------------TATCAATATCACAGGGACAACGAGGAGCACCGCCGCTGCATCGCCGCCTGCCTCGTCAAAGGCACTTA
CGTCCACGAGAACGACAGAGCGGAGCG---CAGGGCGGTTAAGCTGGCGCCGGCGTGGTGGGAAAGCTTTGGCTTCCACC
TAAAGAAAGAACTCAGAGAGCCGATATACTCCATCGTCGGTGTTATATT-------------------------------
--------------------------------------------CGACACCATCTACGGTGCCATCTTCGAGTACAGC--
----------CCCAGCGCGCCCCGCGACCGGTGCGCTCCGCCTCCACGGTATGTCGTCGCCTTCAGGGGCACAAAGCCGG
GGAGTATTCGAGACTACTACCTCGACTTGAAA-----------------------ATAGTGGTCAACAAACTGGAGAAAC
GCACGCGCGTCCAGCAACCGTGCCGGTTGGTCGACCAACTTATGACTGATATGAGAAAGGAGGACGAAGCAAGCCAAGGC
CAAGACAGCTGCATCTGGCTCGCCGGACACTCCCTCGGAGCGGCTGTGGCGCTGGTCGTGGGACGGTACATGATGGTGCA
GGAGAAGCCGCCCAACCTCCGGACCTTCCTCTTCAATCCACCGCACGTCTCATTTATAACGTCGATCAACTTGCTGAAGC
TGGATCCGGTGGCGAAGGAGAGCGTGCACCGGGTGGGTAACTTCTTAAGGAAGGGTGCTGCAAAGGTCTTGCACTCCCAT
CGGGAGCACATGAACAACTTGTTCCAGCAGCTTTCCCCTTGGGTGCCGAATCTGTACGTGCACGAGAAGGACCCCATCTG
CCAGGGGTTCATCGACTACTTCGAGCAGCGGCAGAAGTTCATGG-----------AAGGCTCCCCCCGTGTTGACACAAC
GTTCGCGGCATTCTCTCTCCGTGACGCGTTCTGGTGGCACCCTATTGGCAAGAACAAGGACCGGCCGCAACTCCTGCCAT
CGGCGACGCTGTGGAAAAGCTGTCTCGACCACGAGCTGCACGATCCGCACGGTCTCCAGCAGTGGTGGAAACCGGACAGC
GAGCTCCGCTTGGAAGCCAAGCATTATAGCTACCCTGTACCTCAAGCACAAACTACTTCTACCTCATCCGCACGGTCTCC
AGCAGTGCCGGCTTAGCTGTTGCTCCTTGTCGAAGTCAGTTGATCTCTTATTTTTTCGAATAAATGAAGTTCGTCGTCGT
ATCGTTTTCTTGTTATTAAACCACAGGAACCTGGTAATACCAGGGACCGATTTAGAAATAGAGAATTGTAAACTTCTCCT
TAGTTATAAAGTTTTTCCATTTTACCAATTTTATGTTGTCATGTAAATTTTTTTAATTTGTAAATCTGTTCTTGTAGCTT
GGGTTTAAAGCTTCTAAGCCTCGTCCTGCTAATTAACACGAGGTTGGATGGGATTCAACATCTGTATTTTGATATAAAAA
A-------TATAATTCAATCACAGTAATGTCCT--TTTTTTTGCTTTTCGTGATAATTTCTAGTGATCCTCTTTTTTACT
GGTATATAGCATCAAAACTGAGTTCACAAAAAAAAATT-------CTAATCAAACAAAATAGAGAAGTTGGATCCATTCT
TGATCCC-AAAAATTTCATACAT---TCATAATCAAACAAAAATAATCATAATAGTCATCCTGAAAAAAACTATTACATC
CA------------------------------------------------------------------------------
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----ACAAAATATTCACGCATTCAATATCAAACCAGAACATCATATTGGTCATCATGAAAGGAAAAATGGATCCATTCCC
GATCAGACGAAAATATTCATACATTACCGATCAACAAAATATTCGAATCCACTACATCTAATAAAGATG-GAGGACCAGC
TCTAAGCCAAACAATATTTCTACCCTCCATACGGGCATAA----------------------------------------
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------------------------------------------------------------------------------TT
TACTGAAGAATTACTAACTGTATTCTGACTATGGCTAACATGATAATACAAGTTTGACAAGAGGCCATTAGCGACTTGAT
CTCAAGCACTAAAGAGGAATAGATAGACCTATCATGGTCACCATTATGGGCCATCTTCACCACCACCAAGGCATCGAACT
CAATGATCGCTGACATGTCACACCATTGCAAGCCTCAAAAAAGAAAATTTCACGCCATTGCAGGCCTCAAAAAAAAAATT
CACAACATTGCAATGCAAGTG
>chr5A_2890
AAG-----------------------------------------------------------------------------
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----------------------------CAGACCAGAACATCATATTTGTCATCATGAAAGAAAAAATAGATCCATTCCC
GATCAAACGAAAATATGCATACGTTACCGATCAACAAAAAATTCGAATCCACTACATCCAATAAGATGG-GAGGACCAGA
TCTAAGCCAAACAATATTGCTACCCTCCATACGGGCATAATCTCTACTACTCCCTCCGTTCCTAAATATAAGTCTATTTA
GAGATACCAATGTAGACTACAAACAGAGAAAAATAAGTGAATCTATATTCTAAAATACGTCTATATACATCTGTATATAG
TTCTTATTGAAATATCTAAAAAAAAATTAAGAACGGAGGGGGTACCTAAAAAGAACTTAAAGTTCTCATTTCACCTTTCT
TTCCACTATCCCTTCGTCCAACCTTCCTTATATGATAATAAATTAACTTAATTTACTTACCTTCTGAACAAGTTCCACTT
TAATTTACTTACCAAACTTCGGATCAAAATATAAGGTAATTCATGAGTAGAATTTGATGATCATTTATTTACACAATCGC
ATTATTATAGACAAATAAATCACAAATCAACGTACTAGAAGATTTATATCCCGTTGCAACCCACGGACATTGTTCTAGTT
TACTCAAGAATTATTAACTGTATTCTGACTATGGCTAACATGATAATACAAGTTTGACAAGAGGCCATTAGCGACTTGAT
CTCAAGCACTAAAGAGGAATAGATAGACCTATCATGGTCACCATTATGGGCCATCTTCACCGCCTCCAAGGCATCGAACT
CAATGATCGCTCACATTTCACACCATTGCAAGCCTAA-------------------------------ATAAAAAGACTT
CACACCATTACAA--------
>SNPs
SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS-------S-----S------------S---------SS-------S-----------------SS---
------------S--S-----S-S-SSSSS----S---SS-----S-------------------------------S--
--S----S-------------S-----S--S-SS-S--SSS-SS-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------SSSSS
SSSSSSSSSS---S------S---SS----------------------------------------------S-S--SSS
SSSSS-SSSSSSSSSSSSSSSSSSS-SS-SS-SSSSSSSSSSSSSSSSSSSSSSS-------S-----S-S--S-SS-S-
--------SS-S---S-S-SS-SS-SSS------SS--------SS--SSSSS-SSSSS--SSSSS-SSSSS---SS-S-
SSS-----------------------S-----S-----S-SSS-SS---------SS-----S---S-------------
--S--------S------S-S------------------S-----S--S--S--S-S-S-SSSSS-------------SS
S-SSSSS------S---SS-SS-S-----SSSSS-S--SS-S----S-S-SSS-S--SS-S-S-SS---SSS-S----SS
-----S------S-SS-SS-----SSSS-----SSS--S---------------------S-------S---SSS---S-
------S--------------S---SS-------------SS--SSSSSSSSSSS--S---SS-S------S--SSSS-S
SS---SSS-SSSSSS-SSS-SSSSSS-SSSSS-SS-S-SSSSSSSS-SS--------------------S----------
--------------------S-S---S-S-S-SSSSS-------------S-----S-S----S--S------------S
------S-S----SS----S--S------S---S--S-----S----SS------------SS-SSSSSS-SSS------
-----------------------------------SSS--SS-S--S---------S---S-----S----SS-S-S-S-
-S--------S--------------S---SS----S---S---SS---SS----S---S-------------------S-
--------S-----S---------S---------------S------S-S---S-----------S-S------S-S---
-----S----------------SSSS--SSSSS-SSSSSSSSS-S-S--SSSS---SS-SSSSSSSSSSSS-SS-SSSS-
-SSSSSSS-------S--S----S--------SSS-------------S----S----S-S-------------------
--------------S-------------------SSSSSSSSSSS------------------S--S-------------
-------S----SS---------SSS----------------------------------S--S---------S------
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS---------S-----------S---------------------------------------------S--------
----S-----------------------S---------------------------------S------S--------S-
---S-----------S----------------------------------------------------------------
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----S--------------S---------------------------------------------------S--S-----
--------S-------------------------------------------S----------------------S-S--
---------------S-------------------S------SSSS-------S--------S-----------------
---S-----------------
>forward_730
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----------------------------------------------------------------------GTGTGACTGT
GTGAGAGCGA----------------------------------------------------------------------
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>reverse_2117
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------------------------------------AGCACAGTCTCGACCAGTTG------------------------
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>forward_1254
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----------------------------------CATCTCCGACACCATCTCCG--------------------------
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>reverse_2147
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------------------------------------------------------------------TGAAACCGGACAGT
GAGCTC--------------------------------------------------------------------------
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>forward_1831
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---------------------------------------------------TCGCTGTGGGACATTTCTCC---------
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>reverse_3804
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-------------------------------------------CCCTTCACACCATTGCAAGC-----------------
---------------------
