>input_sequence_54501
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ATGGGCGCCGTCTCGGCGACGGCGGACGTCGTGGTGGCGCTCTTCTCGCTGATCATGGCGGTGGCGGCCCCGCTGTTCGA
CTCTCAGGTCGTGCTCCCGCGCGACCTCTACCCGGCGCCGCTCGTGGACATCCACCGGTGGTTCGCCGTCGCGTTCGGGC
ACTACCTCGTCGCCTACCCGCCGCCTTTCTTCCTCGGCCTCGTCTGGCTCGACCTGGCCTTGCTGTGGCCCGTCTGCGTC
GCCAACCTCTACGGCATCCTCGCGCGCCGCCGCTGGTCGGCCACCACCTCGCTCATGGCGGGGGTCTACATGCTCACCTA
CTTGGTACGTACCCGTCTTGGTCCTGCGTTTGCCCTTTCTTCTTGCTTTGCTTCAAGATCCATACAGGCGAAGTGA----
---TAGCTTCTTTCTCCGTTGACCAAGCGACAAGCATTTCATACAAGAAAAATC-TTGATTGCTGCGCTGCCTTGGTGGT
GGAAGTTTGTGGAGGAGAG-TTTTTTTAGTGAAATGATTGATAATGTGATTCGAT----------------------AAT
TCCTTGAGCAAATTTCACCGCCAGTTG-----------TTGGTTCTGCCGACACTCGACTTGAGCAAATGA---------
---------------------------CTTTATCCTCTTGTCTTCTCGCGGAGAGTGAATTACAAAAAACATCGACATTG
AAGGCTAGATTTACAGAAACCACAAGTCTATAATTTTGTAGGTTTCTCTGACCGCCGCCGCCGCCGCCACTCTAGGGCAC
CATGGCGACGCGGCGGCGGTGGCGGTCGGAGATGTGACAGGGTTCGACGGCGGCGAACGAGTGGGAGCAGAGGGCGCGAG
AGAATGAGGGTTGGGGGTGGGCCTGTAACGATTCGTAGAAGAGGGTACCGGCTCGAGCAGGCCCGGGCACGGCGTCTGAC
GCCGTCTAACGGCTCAGACGGATGAACAGTGCCGCCACATCGACAAAAGCGGGCCTACCTGTCATAATCTCACTTAAAAC
GACCGAACTGAGCAACTCGTGTTTTCTACAAAAAAATTAGCCTGAAAGTTAGTGTTTTTGGGCACAAAATTGTAGACTTG
TAGTTTCTGCAAACCTAGCCTTCAATGTCGATATTTTTTACAATTCACACTCTCGCGGAAGA----TC-TTTCTCGATTC
GTTTCTAATGGTGACCGCAATTGTTTCAGTCCGCCATACTCGGCGACATGTTGGGCTCAGGAAAAGCAACGCTGAGGCTG
CTTCAGCTGTATGTTCCGTTCATCGTGGTTGCTGTAATTGCAGTTTTGCGTGGTCTCTGCTCATGGTCAGCGCCGTTAGC
TGCTGCAACATCGGTTGCATCTTCAGCTCAGAAGAAGAAAGCCTAG----------------------------------
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>chr3A_1_TraesCS3A01G099700
AGAAACCAAGTCGGATTGAGATTGTGATCACGACGCAGTACCGCCTCTGGTCCTAATATATATACTGCTACTGGTTGCGG
CCAAAGACACATCG--AAAA-CACCTAGTGTTTTACTTCATCTCAAAACTTGTGCTGCCATCGTAGTCTACTTCATCCCT
AACGCTGGTGTGCATCGGCGTGCGGGAGAGCGGGTCTCTGAAACCGTTCGTCCTTTCGATCCTGCACAGGGAGAGGACGA
ATTAGGTTTTTGGGAAGCGCTCTGCGCGACTGCTCAAGTTCATCATCATGGGTCGTCTTCTGTTCAAGTCGAGCGGTGCT
ACTCATTGACGTCTTCATCGCCGTCAACAACAAATCGTCACCAACATCGTCATCATCACCGTTGCTTCTTCAGCAACTAA
CAAATAGTACGTCCTACGTGTTCTGTTCATGTCTCTCCCCGAAACTTGCTACTTAATGTGTGATGCTGATGTGCA----T
GTTTAGTTGTTCATCTAGTTTGCCAGATTGTTGCATTCTAGTCTTTGTTTTAGTCATGAATTATTTACTGAAATTAATCA
TGAACTTGTCTAATATTCCAACATAGCTTTGTCAAACATGGTCGAAAGAGCATCAATGGCAAAGTTAAAATGGCAAAGAG
GGGACAACGGGTCACCTTATAGCAACCCTCTTTTCTTTGAAAGAAGTGACCAACATCGTCGTTGATCAAAATGGCAGTCT
GGCCCCCGCTTCGAACCCCTTTCGAATCTCATGAAGGAAAGCCCGGTTGAGCCGATC-----------------------
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----------GTAGGAGCAAAACAGCGTGGAAAGAAAATCTCCTCTCTACAGTCGCTTCCACTCCGCATCCCTCTCTATC
GCAATCTCAACGTCAACCTCCACCTCGCAGACACAGTTTCTTCCTGTCATCACACTCCTACACCACAAGATACAGAGCAG
CTCCTCTGTAGAAAAACAGGAACAGAGCGCGGTCCTCCACAGCTCCGCTCCGCTCCCTCCGGCCGCACCACAACAAACCA
ATGGGCGCCGTCTCGGCGACGGCGGACGTCGTGGTGGCGCTCTTCTCGCTGATCATGGCGGTGGCGGCCCCGCTGTTCGA
CTCTCAGGTCGTGCTCCCGCGCGACCTCTACCCGGCGCCGCTCGTGGACATCCACCGGTGGTTCGCCGTCGCGTTCGGGC
ACTACCTCGTCGCCTACCCGCCGCCTTTCTTCCTCGGCCTCGTCTGGCTCGACCTGGCCTTGCTGTGGCCCGTCTGCGTC
GCCAACCTCTACGGCATCCTCGCGCGCCGCCGCTGGTCGGCCACCACCTCGCTCATGGCGGGGGTCTACATGCTCACCTA
CTTGGTACGTACCCGTCTTGGTCCTGCGTTTGCCCTTTCTTCTTGCTTTGCTTCAAGATCCATACAGGCGAAGTGA----
---TAGCTTCTTTCTCCGTTGACCAAGCGACAAGCATTTCATACAAGAAAAATC-TTGATTGCTGCGCTGCCTTGGTGGT
GGAAGTTTGTGGAGGAGAG-TTTTTTTAGTGAAATGATTGATAATGTGATTCGAT----------------------AAT
TCCTTGAGCAAATTTCACCGCCAGTTG-----------TTGGTTCTGCCGACACTCGACTTGAGCAAATGA---------
---------------------------CTTTATCCTCTTGTCTTCTCGCGGAGAGTGAATTACAAAAAACATCGACATTG
AAGGCTAGATTTACAGAAACCACAAGTCTATAATTTTGTAGGTTTCTCTGACCGCCGCCGCCGCCGCCACTCTAGGGCAC
CATGGCGACGCGGCGGCGGTGGCGGTCGGAGATGTGACAGGGTTCGACGGCGGCGAACGAGTGGGAGCAGAGGGCGCGAG
AGAATGAGGGTTGGGGGTGGGCCTGTAACGATTCGTAGAAGAGGGTACCGGCTCGAGCAGGCCCGGGCACGGCGTCTGAC
GCCGTCTAACGGCTCAGACGGATGAACAGTGCCGCCACATCGACAAAAGCGGGCCTACCTGTCATAATCTCACTTAAAAC
GACCGAACTGAGCAACTCGTGTTTTCTACAAAAAAATTAGCCTGAAAGTTAGTGTTTTTGGGCACAAAATTGTAGACTTG
TAGTTTCTGCAAACCTAGCCTTCAATGTCGATATTTTTTACAATTCACACTCTCGCGGAAGA----TC-TTTCTCGATTC
GTTTCTAATGGTGACCGCAATTGTTTCAGTCCGCCATACTCGGCGACATGTTGGGCTCAGGAAAAGCAACGCTGAGGCTG
CTTCAGCTGTATGTTCCGTTCATCGTGGTTGCTGTAATTGCAGTTTTGCGTGGTCTCTGCTCATGGTCAGCGCCGTTAGC
TGCTGCAACATCGGTTGCATCTTCAGCTCAGAAGAAGAAAGCCTAGATTAAATTTGTGTTTATCACATTTTAGAAAGAAA
G---------------------TAATCAAGTTCCATTCGATGTAAATGTGCAAGTACTTGTTTAATGACTGGTGTATCTT
TTCTTTCATTATTAAGCATTAGCACCGT----------------------------------------------------
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----------AAAAGTCATCCCCCGTCGCGACGGCCACACGACGACGCTTGCAGCGACGTCCCGCCACCACCACCAACAG
CGCGAAGGGATGCCATGGCCCGCATGACAATGTTTTTCTTAAACTCTCTGCCCCTTTCACAGGGGCGGGCCCCTCTCTCC
CGCAATCTCCAATCAACAACTCACACGTTACATATTTACGTTAATTACGTAACTAGAATCATGTAGGTGTAGCATTACTC
ACCAACGACTCATGCATGCACAGCACAATAGCAAAGGATGTGTTTGGTACATGTGAAAAAAAATAGATGATGT-------
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---GTTTTTTTTAATGAAAAAGATCGGAGTTATCAA--------------------------------------------
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-------------------------------------------TTCACCGGAAGTACAAAGCATCTCAAACACACAAAAA
AGTA---CATCAAGATTCCGAAACCACCGATGTGTTTGGTAGCATTATCAACCTAGTATATATGTTCTCCTAGACATACT
AAGTGTAGACATGTTGAGTACATGCAACTGTTATTATTTAGTAGCGGTGTATGCTTTGAGACAAGCTGAGTTGAGACATT
TGTTTGGTCGCTTGCATTGTGATTAGACATGCTTTAAACTAAGACTGTGTTGGTAGGATGTATCTTATCCAGATGTGGTT
ACCTTCTTTTAAGGTGGTGAGGATACTATGACAATTACAAATAGACAACATTTTTTTGTGAATCGTTATAAATAAAATTG
GGTTCATATTTTATTATACTAGATGATACCACACGCATTGCTACGGGAATTGGTTGCAAAATATTTTAATTAGATTGTAT
TGTGTGGGATATAAATATTTAGATAAATAGCACATGAACCAAAATTAAAAATACATAACACTTATTATATTTGATTATGT
ACATTGGTAAATTTTTATTGAATATAAGT
>chr3A_1
AGAAACCAAGTTGGTTTGGGATTGTGATCGCGACACAATACCGCCTCTCGTCCTAATATATATAATGCTACCGGCTGCGG
CCATAGACACACCG--AAAAACACATAGGATTTTGCCTCGTCTCACAACTTGTGCCGCCATCATAGTCTACTCTATTACG
AACGTCGACATGCATTGGCGTGTGGGAGAGCCGGTCTCCGGAACCGGTCGTCTTTGTGATCTTTCACCGAGAGAGGACGA
ATTAGGTATTTGGGAAGCGCTCTGCGCGACTGCTCAAGTTTGTCATCACGGGTCGTCTTCCGTCCAATTCGTACGGTGCT
ACTCATCGTCGTCTCCATCGTCGTCAACAACATATCGTCGCCAACATCATCATCAACACCGTCGCTTCTGCTGCAACTAT
CGAATAGTACATCAATCATGATCTGTTCATGTCTCTCTCTTGAG-TTGCTATTTTGTGTGCAATGCTGATGTACA----T
GATTTTTGGATCTTTTAGTTTGCTAGATTGTTGCATGCTAATTTCTGTTCTAGTCATGAATTATTTACTGGAATTATTCA
CGAACTTGCCTAATTTTCCAA-----------------------------------------------------------
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>chr3B_1
AGAAACCAAGTCAGTTTGAGATTGTGATCGTGACACAATAACGCCTCCGGTTCAAATATATATACTGCTACCGGGTGCGA
TCAAGGACACACCGA-AAAA-CACCTAGGGTTTTACCTCATCTCGCAACTTGCGGCGCCATTGTAGTCTACTTCATCCCT
AATGCCGACATGCATTGGTGTGTGGGAGAGCAAGTCTCCGGAACCGTTCATCCTTGCGATCCTGCATCAGGAGAGGACGA
ATTAGGTTTTTGGGAAGCGCTCTGCTCGACTGCTCAAGTTTGTCATCAAGGGTCGTCTTCCGTCCAAGTCGGGTGGTGCT
ACTCATCGCCGTCTTCATCAATGTCAACAACTGATCTTGTCCAACATCGCCATCAACACCATGGCTCCTTCAACAACTAA
CGAACAGTATGTTCTGCATGTTATGTTCATTTCTCTCCTCGTAG-TTGCTACTTCATGTGTGATGTTGCTATACA----T
GTTTAGTTGTTCATCTAGTTTGCTATATTGTTACATGCTAGTCTTTGTTTTAGTCATGAATTATTTACTGGAATTAATAA
TGGATTTGTCTAATATTCCAACA---------------------------------------------------------
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>chr6D_1
AGAAACCAAGTCGGTTTGGGATTGTGATCGTGACACAATACCGCCTCTGGTCCTAATATATATACAGCTACCGGCTGCGG
CCAAAGACACATCG--AAAA-CACCTAGGGTTTTGCCTCATCTCGAAACTTGCGCCGCCGTCGTAGTCTACTCCATCCCA
AACGCCGGCGTGCATCGGCGCGTGGGACAGTAGGTCTCTGGAACCGTTCGTCCTTGCGATCCTGCACCGGGAGAGGACGA
ATTAGGTTTTTGGGAAGCGCTCTGCGTGACTACTCAAATTCGTCATCACGGGTCGTCTTCGGTCCAAGTCGGGCGGTGCT
ACTCATCATCATCTTCATC-CCGTCAACAACAGATCGTAGCCAGCATCGTCATCAACACAGTCGCACCCACAATAGCTAA
CGAACAGTACGTCCAACATCATCTGTTCATGTCTATCTCTACAG-CTGTTGTTTCATGTGCGATGCTGCTGC-------T
GTTTTGCTGTTCTTCTAGTTTGCTAGATTGTTGCATGCTAGTATTTGTCTTAGTCATGAATTATTTACTGGAATTAATCA
TGAACTTGCCTAATTTTCCAACA---------------------------------------------------------
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>chr6D_1
AGAAACCAAGTCGGTTTGGGATTGTGATTGTGACACAATATCGTCTCGGGTCCTAATATATATACTGCTACCGCCT-CGG
CCATATACACACCG--AAAA-CATCTAGGGTTTTGCCTCGTCTCACAACTTGTGTCGCCATCATAGTCTACTCTATTCCA
AACGCTGACGTGCATCGGCATACGAGAGAGCAGGTCTCTGGAACCGTTCGTCTTTGCGATTCTGCACCAGGAGAGGACGA
ATTAGGTTTTTGAGAAGCGCTCTGCGCGACTGCTCAAGTTCATCATCACAGGTCGTCTTCCGTCCAAGTCGGGCGGTGCT
ACTCATCGTTGTCTTCATCGTTGTCAACAACAGATCGTCGCCAACATCATCATCAACACCGTCGCTCCTGCTGCAACTAC
CGAACAGTACGTCAATCATGATGTGTTCATGTCTCTCCATGAAA-TTGCTATTTTGTGGGTGATGCTGATGTACA----T
GATCTGCTGCTCTTCTAGTTTGCTCGATTGTTGCATGCTAGTTTCTATCTTAGTCATGAATGATTTACTGTAATTGATCA
TGAACTTGCCGAATATTCCAACA---------------------------------------------------------
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>chr6D_1
AGAAACCAAGTCAGTTTGGGATTGTGATCGCGACACAATACCGCCTCTGGTCCTAATATATATACAGCTATCAGCTATGG
CCAAAGACACACCG--GAAA-CACCTAGGGTTTTGCCTCATCTCGCAACTTGCACCGCCGTCATAGTCTACTCCATCCCA
AACGCCGGCGTGCATCGGCGCGTGGGACAACAGGTCTCCGGAACCGTTCGTCCTTGCGATCCTGCACCGGGAGAGGACGA
ATTAGGTTTTTGGGAAGCGCTCTGCGTGACTACTCAAATTCGTCATCACGGGTCGTCTTCCGTCCAAGTCGGGCGGTGCT
ACTCATCGTCGTCTTCATTGCCGTCAGCAACAGATCGTAGCTAGCATCGTCATCAACACAGTTGCACCCACAATAGCTAA
CAAACAGTACGTCCAACATCATCTGTTCATGTCTATCTCTACAA-CTATTGTTTCATGTGCGCTGCTGCTGC-------T
ATTTTGCTGTTCTTCTAGTTTGCTAGATTGTTGCATGCTAGTATTTGTTTTAGTCATGAATTATTTACTGGAATTAATCA
TGAACTTGCCTAATTTTCCAACA---------------------------------------------------------
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>chr4D_1
AGAAACCAAGTCGGTTTGGGATTGTAATCGCGACACAATACCGCATCGGGTCGTAATATATATGCTGCTACCGGCTGCGG
CCAAG-ACACACCGAAAAAA-CACCTAGGGTTTTGCCTCATCTCACAACTTGCGCCGCCATCGTTGTCTACTCCATCCCA
AACGCCGGCGTGCATCGGCGCGTGGGAGAGCAGGTCTCCGGAACCGTTCGTCCTTGCGATCCTGCACCGGGAGAGGACGA
ATTAGGTTTTTGGGAAGCGCTCTATGCGACTGCTCAAATTCGTCAACACGGGTCGTATTCCGTCCAAGTTGGGCGGTGCT
ACTCATCGTCGTCTTCATCGCCGTCAGCAACAGATCGTCGCCAACATCGTCATCAACACCGTCGCACCCACAATAGCTAA
CGAACAGTACGTCCAACATCATCTGTTCATGTCTCTCTCTACAG-TTGTTGTTTCCTGTGCGCTACTGTTCTGCA----T
GTTTTGCTGTTCTTCTAGTTTGCTAGATTGTTGCATGCTAGTATTTGTTATAGTCATGAATTATTTACTGGAATTAATCA
TGAACTTGCCTAATTTTCCAACA---------------------------------------------------------
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>chr6B_1
AGAAACCAAGTCGGTTTGGGATTGTGATCGCGACACAATACCGCCTCTGGTCCAAATATATATACAGCTACCGGCTGCGG
CCAAAGACACATCG--AAAA-CACCAAGGGTTTTGCCTCATGTCGCAACTTGCGCCGCCTTCGTAGTCTACTCCATCCCA
AATGCCAGCGTGCATCGGCGCATGGGACAATAGGTCTCCGGAACTGTTCGTCCTTGTGATCCTGCACCAGGAGAGGACGA
ATTAGGTTTTTGGGAAGCGCTCTGCACGACTGCTCTGATTCTTCATCACGGGTCGTCTTCCGTCCAAGTCAGGCGGTGCT
ACTGATTGTCTTCTTCATCGCCGTCAGCAACAGATCATCGCCAACATCGTCATCAACACAGTCGCACCCACAATAGCTAA
CGAACAATACGTCCAACATCATCTGTTCATGTCTATCTCTACAG-CTGTTGTTTCATGTGTGTTGCTGATAC-------T
GTTTTGCTGTTCTTCTAGTTTGCTAGATTGTTGCATGCTAGTGTCTGTTCTAGTCATGAATTATTTAATGGAATTAATCA
TGAACTTGCCTAATTTTCCAACA---------------------------------------------------------
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>chr5B_7
------CAAGTCGGTTTGGTATTGTGATCGCGACACAATACCGCCTTGGATCCTAATATATATACTGCTACCGGCTGCGG
CCAAAGACACACCG--AAAA-CACCTAGGGTTTTGCCTCATCTCGCAGCTTGCGCCGCCATCATAGTCTATTCCATCCTA
AGCACTGGCATGCATCGGCGCATGGGAGAGCGGGTCTCTAGAACCGTTTGTCCTCGCGATCCTGCACCGGAAGAGGACGA
ATTAGGTTTTTGGGAAGCGCTTTGCGCGACTTCTTAAGTTCGTCATCACGGCTCATCTTCCGTCCAAGTCGGGCGGTGCT
ACTCATCGTCGTCTTCATCATCATCAACAACAGATCGTCGCCAACATCGTCATCAACTCCGCCGCACCCACAACAGCTAA
CGAACAATACGTCCATCATCATTTGTTCATGTCTCTCTCTACAA-CTGTTGTTTCATGTGCGCTGTTGTTATGCA----T
GTTTTGTTGTTCCTCTAGTTTGCTAGATTGTTGCATACT--TGTATGTTCTAGTCATGAATTATTTACTGGATTTAATCA
TGAACTTGTCTAATTTTCCAACA---------------------------------------------------------
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>chr4A_56
ATATAA------------------------------------------------------TATAGTGCTACTGGTTGCGG
CCAAGGACACACCT--AAAA-CACCTAGGGTTTTACCTCATCTCGCAAATTGCACTACCATCATAGTCTACTTCATACCT
AACGCCGACGTGCATCGGTGTGCGGGAGAGCAGGTCTCTGAAACCGTTCATCCTT--GATCCTGCTCCGGGAGAGGACGA
ATTAGGTTTTTGGGAAGCGCTTGGCGCGACTGCTCAAGTTCGTCATCACGGGTCGTCTTCCATCCAAGTCGGACGGTGCT
ACTCATCGTCGTCTTCATCGCCATCAACAACAGATCGTCGCCAACACCGTCATCAACTCTGCTGCTCCTTCAGCAACTAA
CGAACAATACGTTCTACGTGTTATGTTCATGTCTCTCCTCGTAG-TTGCTACTTCATGAGTGATGCCGGGGTACATGTTT
ATTTAGCTGTTCATCTAGTTTGTAAGACTGTTACATGCTAGTCTTTGTTTTAGTCATGAATTATTTACTAGAATTAATCA
TGAATTTACCTAATATTCCAACA---------------------------------------------------------
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>chr3B_766
TTTCTCGGTTCCTTTTTAACGGTGGCTGCAATTATTACGGTCCGCTATACTCGTTGACATGTTGGGCTCAGGAAAAGCAA
CGCCGAGGCTGCTTCAGCTGTATACTCCGTTCATCGTGGTTGCTGTAATTGCAGTTTTGCGTGGTCTCTGCTCATGCTCA
GCCCCGTTAACTGCTACAACATCGGTTGCATCTTCAGCTCAGAAGAAGAAAGCCTAGATTGAGTTTGTGTTTGTCATATT
TCAAGAAGAAAGTAATCATGTTTCACTCGATGTAAATGTACAAGTACTTGTTAAAGTACTGATGCATCTTTCCTTCCATT
ATTAAGCATTAGCACCGTAAAATATCACCCTCTGTCACGACGGCCACACGACGACGCCTGTAGCGACCTCACACCACCAC
CATCAACAGCGCGAAGGGATGCCATGGTCCATTGAGGGCCCGCATGACAGTGTCTGATTTAGTGGGCCTGTCGGGCTCGG
GCAACCACCAACGACTCATGCATGCACAACACCGTTGCAAGGATGTATTTGGTACATTAAAAAAAGGATGTGTGTTTTTT
TTTTACAAAAAGGATCGGAGTTATTATAAAAGTTCATGGGGAGTACAAAGCATCTCAAACACTGTAAAAATTCGATCAAG
ATTCCAAGACCATCGATGTGACTGCACAGCTCAAACATTGGATACAAAATGTAGGGACGGGATGGAACCCGAACGCCGCA
CACTTTGAATTTTGGCAAAATCACCTCATGTAAGTACAGAAATAGCCATAACGTTTCTCTAACATGTGCTGCCCCAAGCT
TCAACGAACACGAACAGATAAGGCTATGGAGCTCCGGCGGCGGACGTCGCCATGCGCTACGCTGCGGCCTCATTGTGAAC
ATGGGGAGGTAGGATGGAGGCATGAGTTAGTCAGACCGAGAAACACGTCCAACAACTTTGGAGTATAAGCTTTCCATTCT
AAGATGGTTAGCTGCCTATCACAAATAGGGAGGCCCAGTTAGATGATAGGGAATGCGGCTTACAATTGAGAACAGTGGCC
ATGTACTCACCCTCATCCATTGACATCCCCATGGCAACCATCTCGCATTTGTGAAAGTTTATCTTGAGACTTGATATCGC
CTCGAAGCAAAGCGACATCAGCTTAATTGGGCCGATGTTGTGTTGGTTCGGTTCAAATAGCAACACCATACCGTCCACAT
AGTGCAACTTCGATACCCCAGGTATAAGATGGGCCACAACACCCTTTATGCGACCCACCGCCTTAGCTTTGTCAAGCATG
GTCGAAAGAGTGCCAGCGACGAAGTTAAAGAGGAGCGGGGACAGCGGGTCACCTTGCCGAAACCCTATTTTGTTTTGGAA
GAAGTGACCAACATCGTCGTTAATCGAAATGATTGTCTGCCCTGAGACCAGCTGCAAAACACGATGAACCCAACCAGCCT
CGAACGTCTTTCTTTTTTTCTGGAGAAACTTCCAATCTACTCCCTCCGTTCCATATAGTCTTTTTAGACATTTTAAATGG
ACTACAACATAAGGATGTATATAAACATATTTTAGAGTATAGATTCACTCATTTTGCTCCGCATGTAGTCACTTGTTGAA
ATCTCTAGTAAGACTTATATTTGAAAATGGAGGAGCACTATTCATCATCTATCATGGGTTCACGGCAGTACATTTCAAAG
AAAATCGATCGTAGGAGCAAAACAGTCCGCAAAGAAAATCCTCTCTACAGTTGCTGCTCCACTCCGCGTCCCTCTCTATC
GTAATCTCAACGTCCACCTCCACCTCGCAGACACAGTTTCTTTCTGTCATCATACTCGTACGCCAC---ATACAGAGCAG
CTCCTCTGTAGAAAAACAGGAACAGAGT--GGTCCTCCACGGTTCCGCTCCGCTCCCTCCGGCGGCACCACAACAAACCA
ATGGGCGCCGTCTCCGCGACGGCGGACGTCGTGGTGGCGCTCTTCTCGCTGATCATGGCGGTGGCGGCCCCGCTGTTCGA
CTCCCAGATCGTGCTCCCGCGCGGCCTCCACCCGGCGCCGCTCGTGGACATCCACCGCTGGTTCACCGTCGCGTTCGGCC
ACTACCTCGTCGCCGACCCGCCGCCTTTCTTCCTCGGCCTCGTCTGGCTCGACCTCGCCTTCCTGTGGCCCGTCTGCGTC
GCCAACCTCTACGGCATCCTCGCGCGCCGCCGCTGGTCGGCGGCCACCTCGCTCATGGCGGGCGTCTACATGCTCACCTA
CTTGGTACGTGCCCGTCTTCGCCCTGCGTTTGCCCCTTTCTTCTTGCTTGCTTCAAGATCCATTCGAGTGATCAAGTGAT
AGCTAGCTTCTTTCGTCGTTGACCAAGCGTGAAACATTTGATAATATTATCTTA---GATTGCTGCGCTGTCCTGCTGGT
GGAAATTTGTAGAGGAAGTTTTTTTTTAGTGAACTTGAGGATAGAGATTTGATAATTCAAAATTTCAAAAAATAAAAAAT
TCCTCGAGGAAATTTCTTCACCAATTATATTTTTTCGTTTGGTTCTGTCAACACTCGACAGGTAGTTAATCTCCAGTCGC
CGGCCTATCACTCCTGTGGTACTTAACCTTTATCCTCTTCTC--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------CGTTTTCATGGTTTTTTTTTTTTTGCTCGCTTC
GTTTCTAACGGTGATTGCAATTGTTTCAGTCCGCGATACTCGGCGACATGTTGGGCTCAGGGAAAACAACGCCGAGGCTG
CT-----------------------------------------------------------CATGCTCAGCGCCGTTAAC
TGCTGCAACATCGGCTGCATCTTCAGCTCAGAAGAAGAAAGCCTAGATTGAATTTGTGTTCGTCATATTATTATTTTTGA
CCCGCATGTTTCAAGAAGAAAATAGTCAAGTTCCACTCGATGTAAACGTATAAGTACTTGTTCAATGAACGATGTATCTT
TTCTTCCATTATTAAGCATTAGCAGGACAAAGTGTCTCCTGAGGAGAATGCTAGATTAGAGGCCAAGTTCTCAGAAGAGG
AGATTAAAAATGTTGTGTTTGGGTCATACTCAGATGGGGCCCCTGGTCCTGATGGGATACCCTTTATGTTCTATCAAAGC
TCTTGGGAATTGGTTAAATATGATCTTATTGAGATGTTTAATGCTTGGTTTAATGGTAGACTGGACCTTTTTAGACTTAA
TTTTGCCATGATTACATTGATTCCTAAAGAGAATGAGGCTAAGACTATGAACAAATTTAGACCTATTAGTCTCCTTAATT
GTGTGTGCAAGATTTTTACTAAGGTTCTTACTAATAGGCTTGCTGGGTTGATTGGTAGGTTGATTTCTGACTTCCAATCT
GCCTTTGTGAGGGGGAGATATATTTTAGAGAGTGTGGTGTCTGCCCATGAAGTAGTGCATGCAGTGCATTCCACTGGTAG
ACAGGGTTTAGTGTTTAAAATAGACTATGAAAAGGCCTATGATAAAGTTAACCTGAATTTCCTTTATGAGATGTTGGCTC
TAAGAGGATTTGGGTCTAAGTGGATTGGTTGGATTAAGAGTATTACTCAAGGAGGCTCTGTTGGAGTCAAATTAAATGGG
GAGGAAAGTGACTTCTTCCTCACTGGTAAAGGTTTGAGGCAGGGGGACCCTGTAGCTCTTTTACTTTTTAACTTGGTGGT
AGATGTGTTCTCTAGGATGTTAATCAAAGGATCCCACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTT
GCAATATGCTGATGACACATTATTGTTTCTAGAAAAGGATAGTAGAGTAGCCTTAAATCTTAAATGGATTCTTACCTGTT
TTGAACAAGTGTCTGGTATGAGAATCAACTACCACAAGAGTGCTTTAGTTCCCATAAATGTTGCTCCACAGGAGTTGGAT
GAGTTTGTAGACATTTTCCAATGTGTGGTGGGATCCTTCCCTATCAAGTATCTAGGCATCCCATTACACTATGACAAATT
AAGCAGGGAGGACCTGCAATACCTGATTGATAAGATTCTGTCAAGAATAGCAGGGTGGAGAGGAAAGTTGTTGTCATATT
TAGGGAGGATTATTCTTATTAAAACCTGCTTAGCTAGCATCCCTATCTATCTCCTGTCTTTTTTCAAATTCCTTAAGTGG
GCTCTTAATTTGATTAATTCCCATATGGCCAATTGTCTATGGAGTGACACCGATGGTGCTCATAAAATTCATTTGGCTAA
CTGGCCTTCCATTTGCATGAAAAAAGAGTTTGGGGGTATGGGGTTCCAAACCTCCAAGATATGAACCTCTGCCTGATTGG
ATCTTGGGTTAAGAGATACATTGCTGGAGAGGGTTCTTTGTGGAGGAGAATTGTAGGTAACAAATATAATACTAAAAGCC
CCAACATCCTTTGCTGTAGAGATCCACACCCCTCCCAGTTTTGGAAAGGGTTGATGTGGGCATTGCATGCTGTGAAAGTG
GGGTACAAGTGGCAAGTGGGTGATGGTAGGTTGATTAGATTCTGGGAGGATACCTGGTATGGTAACACTCCCTTAGCTAC
CCAATACTGGGACTTGTATGTCTTGGTGAATGAAAAAAACAAAACCATTGCAGAGATCTGGGATGGCCAGGAGCTCAAAT
GCACCTTCAGGAGGACCTTCTCAGATGAGCTGATGTCACAATGGTTTGAATTGGTTGAAATTTTGTCACTGACTGTTTTC
TCCCAGGAGGCTGACTCTTTGATCTGGAAATATGAGTCAAAAGGGGTTTATTCTTCTAGATCTCTGTATGCTATTGTGAA
TTTCAGGGGTGTGCAACCTGTTTACCTCCCTGCTGTTTGGAGTGTGAAAGTTCCACCCAGGGTGCAAGGCTTCCTATGGC
TCTTTTCACAGAATAAAATCATGACTTGTGATAATCTTAGGAAGAGAGGCATAGTGAAGCCATTGGAGTGTGTTTTTTGC
AAGGAGATTGAATCTGTTCGTCACTTGCTTTTTGAATGTGTGGTAGCTAGGCTAGTTTGGGCTGAGGTTAATACTGTCTT
CAACATTTCTGTGGTTGGTTTTGAATCTGTGGCTAAATACTGGCTGTGCGCCAAAAAATGCAAGCAACTGAATGTTGTGA
GCTCTGCTGTACTGTGGGGATTCTGGAATTTTAGGAATTCTGTAGTGTTTAATAGGTGCTCTTGGATTTCTATGAAACGG
GTTCTGGGGCTAGTTTACCGCTATCTGAGGGACTGGACCAAGCTGTTCTAAGATGTCCAGGGGGGGGAATGCAAGAGTTT
CAAGATCTGATCTGGAGAACCCTGAGAAATCCATTGATGCTAGAACCAGGCTGAGCTGCCACAAGTGGTTTGAAGACCAA
ATCGTTGATGCTGGGCTCTGGAAAAAGGCAGTTGGAAATGCTGCACACGGAGGAAGGGCCACGCTGGAGTACCAACTACA
GCACCCAGAGGAAGCCGACAGCATCCATGTGGTCAGCATCGGTGGGGAGGGGGGTCTCTCTATCTAGGTCAGCCTAGAGT
GTGTTCGCCTCATGTTTGGAGTGGTTTGAGTGTAAGGTTGGTGGTCGAGAGTAAGTAATGTTGATGTCTGTTTGTAGAAT
GCTTCGGTAGTTTTTGTTTCAAAGTCTGTTTTGGGAGGTAGATCTCCTCCTGAGACTATTCTGGCTGTAGACTGTTCTCA
GTATGGGTGTTTCGGGTCTGTAAGGTACTGCTATGCTATGGTTTCTTTCTATATGAAATGGAGCCGGGGGTGATCCCCTG
TTTATCGAAAAAAAGTCATCCCCCGTCGCGACGGCCACATGACGCCTGCAGCTACC---TCGCGTCACCACCATCAGCAG
CGCGAAGCGATTCCATGGCGCATCGAGGGCCCGCATATGACAATGTCTGAAAGGGTGAGGCTGTCGGGCTCGGGCGTGCA
GGC----------------------------------------------------------------------------C
ACCAACGACTCATGCATGCACAACACCGTGGC-AAGGATATGTTTGGTACATCTAAGAGAAAAGTATGCTTTTGGTCCCT
CAAGTTTTCCAAAAGTATAGACTTGGTCCCTCAAGATTTTTGGTATACATTTGGTCCTTCAAGTCTCAAAACTAGATAAG
TTTGGTCCAAAACCAGATTTAAAGCACGTTACCCGGTTTTATCATGTTTGATTGGTTTTGACCACGTTGACCAGGTTTTA
CTGATGAACAGTACATTAAAAAAAATTAAATTTTGTGGCAACCAAGATGCTTGGGTGCGTTAGGTGCCTGAAAATTTGTG
TGTTGTTTTGACATTTGAGGAGTTCGTGGTCAAAAACAATTTTTGACTCACAAAAATAAGCCAAAGTTTGTTCTTTTTTG
CTAGGGCTCCTCGGATGTTATTTGACCACAAAAATTTACACGCACCGAGCGCACCCAAGCATGTTGGTTGTCACAAAATT
TTAGTTTTTTTTAATTTTGTTTGCTACTTTTTTGAATTTACCGTTCATCGATCAAACCTGGTCAACCCAGTCAAACATGG
TCAAACCCGGTCAACATGCTCAAAATATAGTTTTGGACCAAACTTATCCAGTTTTGACACTTGAAGGACCAAACGTATTC
CAAAAAATCTTAAGGGACCAATTCTATACTTTTAGGGAACTTGACGGACCAAAAACATAATTTTCTCTACATCTAAAAAA
GGAGGACGTGTATTTTTTTAAAGGATTGGAATTATTGTAAAAGTTCACTGGATGTACAAAGCATCTCAAACATAAAAAAA
AAACTTGCATCAAGATTCCGAGACTACCGATGTGTTTGGTAGCATTATCAACCTAGTATATATGTTATC-----------
--------------------------------------------------------------------------------
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>chr3D_954
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---------------------------------CCTCCACGGCTCCGCTCCGCTCTCTCCGGCCGCAGTCACCACAACCA
ATGGGCGCCGTCTCGGCGTTGGCGGACGTCGTGGTGGCGCCCTTCTCACTTATCATGGCGGTCGCGGCCCCACTGTTCGA
CTCCCAGGTCGTGCTCCCGCGCCGCCTCTACCCGGCGCCGCTCGTGGACATCCACCAGTGGTTCACCGTCGCGTTCGGCC
ACTACCTCGTCGCCGATCCGCCGCCTTTCTTCCTCGGCCTCGTCTGGCTCGACCTGGCCTTCCTGTGGCCCGTCTGCGTC
GCCAACCTCTACGGCATCCTCACGCGCCGCCGCTGGTCGGCCGCCACCTCGCTCATGGCGGGGGTCTACATGCTCACCTA
CTTGGTACGTGCCCGTCTTGGCCCTGCGTTTGCCCCTTTCTTCTTGCTCGCTTCAAGATCCATTCGAGTGATCAAGTGAT
AGCTAGCTTCTTTCATCGTTGACCAAGCGTGAAACATTTAATAATATTATCTTGATTGATTGCTGCGCTGTCTTGGTGGT
GGAAATTTGTGGACGAGAG-TATTTTTAGTGAATTTGGGAATAGAGATTTGAGAT----------------------AAT
TCCTCGAGCA------------------------TCGTTTGGTTCCGTCGACACCCGACAGGTAGTTAATCTTCAGTCGC
TAGCACAACACTCCTATGATGGTTAATCTTTATA-TCTTGTC--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------CATTTTCGTGGAAGA----TTTTTTCTCGGTTC
GTTTCTAACGGTGGCTGCAATTGTTTCAGTCCGCGATACTCGGTGACATGTTCGGCTCAGGAAAAGCAACGCCGAGGCTG
CTTCAGCTGTATGTTCCGTTCATCGTGTTTGCTGTAACTGCAGTCTTGCGTGGTCTCTGCTCATGCTCAGTGCCGTTTAC
TGCTGTTACATCGGCTGCA---TCAGCTCAGAAGAAGAAAGCCTAGATT-------------------------------
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-----------------------------
>SNPs
--------------S-------------------S--S------------------------------------------
----------------------------S---------------------------------------------------
--------S----------------------------------------------S-----------S------------
------------------------------------------------------------S--S-------S--------
--------S-----------------------S----------------------S------------------------
--------------------------------------------S---------S-------------------------
-----------------------S------------S---------------------------------S---------
------------------------SSSSSSSSSSS-SSS--SSS-S-S------SSSSS--SS--S-----SSS-SSS--
SSSS---SSSSSSSSS-SSS-SSSSS-SS--SSSSSS-SSS-S-SSSS-SSS-SSSSSSS-S--SSSSSSSSSSSSSS-S
SS-SSSSSS--SSSS-SSSS-SSSSSSS-SSSSSSSS-S-SSSS-SSSS-S-SSS-------------------------
--------------------------------------------------------------------------------
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-------------------------SSS-S----------SS----SS-SSSS-SSS----------S------------
-S------------S---------------------------S---------S----S---S----SSS-----------
---------------------------SSS----------S---------------------------------------
--------------------------------------------------------------------------------
---S-------------------S----------------------------------------S-------------S-
--------------S----------------------------------------------S------------------
------------------------------------------S-------------------------------------
----------S----------S-------------S--SS-SS-SSS----------------S-SS-S--SSSSS----
--------------SS-------------SS--S-----S---SS-SS-SSS-S----------------S---------
----S----------------------------S-SSSS----SS-SSS-SS----------------------------
----S-----------SS-S---S--S--------------------S-----------SS-SSSSS-SSS---------
------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S-S---S-----------S--------S---
--------S------S------------------S-------------------------------------S-------
---------------------------S---------S------S--------------------S------------S-
--------------S----------------------------------S----------SS---S---S-SSSSSSSS-
S-----------------------S----------S----------S--SS-----------S-----SS-S--------
-----S------------------SSSS----------------------------------------------------
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---------------------------------------S----S-SSSS--SS-SSSS--S--S--------S--S---
-------S---S-------S-SSSSSSSSSSSSSS-SSSSS--SSSSSSSSSSSS-SSSSSS-SSS--SS-SSS-SSS-S
S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
----------------------S---SS-S--S------S------------S-S-S-S----SSSSSSS-S--------
--------------------------------------------------------------------------------
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---------------SSSSSSSSSSSSSS--S-S----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------S---S-------------------S-S-----
-SSS-----------------S--S-----------------------------------------S--SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1708
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--------TCGTAGGAGCAAAACAGCGT----------------------------------------------------
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>reverse_2800
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-------------------------------------------------------------------------------G
AGAATGAGGGTTGGGGGTG-------------------------------------------------------------
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>forward_2282
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----------------------CCTGCGTTTGCCCTTTCTTC--------------------------------------
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>reverse_7794
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---------------------------------CGCATTGCTACGGGAATTGG---------------------------
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-----------------------------
