>input_sequence_54487
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-----------------------------------------------------ACCTCGTCAATCCAATCACCCACCCAA
CCAA------CCACCTCTGCACGCGCAGCCCAGATCTCGGCCCCTTCCCTTCCTCGGACCAAGCACCAGCAATGGCCACC
ACGGCAGCCGACGCCACGGCCGCGGCGCCCAAGGACCAGC---CCGCCAACGGTTC---------------------CGA
GCAGGTCACGCGCCACTCCGAGGTCGGCCACAAGAGCCTGCTCCAGAGCGACGCCCTCTACCAGGTACTTGCTGCC----
--ACCGCACAACAAAATTTCGCTTCTTTCGCTCCATCCGTCTCCGGCGAGCTGGCCAGATCTCGCGGTTTCTGATACGGT
TTGATCTTGCGATTTCTGATGCGGTTTGGTCTGATTGTGC---------GCAGTACATCCTGGAGACGAGCGTGTACCCG
CGCGAGCACGAGTGCATGAAGGAGCTCCGCGAGATCACCGCCAACCACCCATGGTACGGACCTCTTTCTTCCTCATCTGC
CTTCGTCTCACCTCGGCCGGATCTGGCGTGACATCTTCTGATC----------AGGATCTCGTTTGTTTGCGCGTGCGTG
CGCGCAGGAACCTGATGACGACGTCGGCGGACGAGGGCCAGTTCCTCAACATGCTGCTCAAGCTCATCGGCGCCAAGAAG
ACCATGGAGATCGGCGTCTACACCGGCTACTCCCTCCTCGCCACCGCGCTCGCCATCCCCGACGACGGCACCGTAAGCTC
CCTCACTTCTCCGCTCCCAGATCCACCGCTCCCAATTCACCAAGAAACTGAAACCGGAATGAAA-------------CAG
ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTGGGGCTGCCGTGCATCGAGAAGGCCGGCGTGGCGCACAAGAT
CGACTTCCGCGAGGGCCCGGCGCTGCCGGTGCTGGACGCGCTGCTGGAGGACGAGGCCAACCACGGCACCTTCGACTTCG
TCTTCGTGGACGCCGACAAGGACAACTACCTCAACTACCACGAGCGCCTCATGAAGCTCGTCAAGCTCGGCGGCCTCCTC
GGCTACGACAACACGCTCTGGAACGGCTCCGTCGTGCTCCCCGCCGACGCCCCCATGCGCAAGTACATCCGCTACTACCG
CGACTTCGTCCTCGACCTCAACAAGGCCCTCGCCGCCGACCAGCGCGTCGAGATCTGCCAGCTCCCCGTCGGCGACGGCA
TCACCCTCTGCCGCCGCGCCAAGTGAACCA-----CAGAACCCGTCTCCGCCGCTCCGCCATAGACGCCAAGAACAAGAA
TTAATTAATTACTCCCCATTTTGTCTTTCCTGCTCGCCTTCTGTACTCTATATCTATCTTCTGCAATTCGTATAAAGATT
TCTCCAGACA----------------------------------------------------------------------
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>chr7A_1_TraesCS7A01G127600
ATCTAGGCTCACCAAATCATCTTCATTCTCGTCGTTGAGGATCACTGCCGAGGCCTCCTCTGAGGTGAGATTGAGGCGCC
CTAGCAGTTCCGCCACGCCGTCCTCTGGTCCGGTTGTATCTTTGCCGGACCCATCCACCTTCTCCTTCAAATCCAGCGCC
GCCGTTACCAGATCGGAGTTGGTGTTGGCTGCTAACATCGCCTTCTCGCTGCTTTCCCTCAAATCTGCCAAGAACACTCT
CTGATTTCAGCCACCAAAGCTACAACCAAGGGTGGGCAGCGAATCTCCGTTCGCCCCTTGATCACCCCGAACTGCAGTGT
TGGAGTTCGATCTCGGAGGGAGGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNATATATATATATATATATATATATATATATATATATATAAAATATGGTTTCTCCATTTTCCG
TGTGTTACAATCACACGTGTGTTTGCACACACATCGTCAATGTTTTACTTTATTCTAGCATCTATCCACTGCTATCCTAA
TACTACCTTGAGGACCCCCTGCAAGTCAAAAAGTCCCTTGTCCAGACGGAGGTCATCAAACCACGACCTTCCGCACGCCT
GTTGTGCCTGCGTGGCTGTGTTTTCCACTCGAGAAAGCGACGACCTTCCGCACCCACCCTGCCCACGACGGTTGAACGAT
GCACGCAACAAGCACAGGTCGCCGAGCCCCGCCGCACCGCACCGATTCGGGGCTTCGCTCCACCGCTCCCTCCCGTTCGC
CGACGGCCGACGCGCCACCCGTCTCTCTCCCACCAACCCCTCCCCCTCCCCCTACCACTCGCTCGGTCTCCGCCCCGCAC
CACTCGAGTGTTCCTCCTCCTCCTCCTCCCTTCCTGGCTCCTCCCTCC-------------CCTCTCCCCCTCCCGCTGC
CGCGCGCCCGCCAGCGCTGCTATATAACCCGCGCGTCGAGTCTCTTCCCGGCAACCTCGTCAATCCAATCACCCACCCAA
CCAA------CCACCTCTGCACGCGCAGCCCAGATCTCGGCCCCTTCCCTTCCTCGGACCAAGCACCAGCAATGGCCACC
ACGGCAGCCGACGCCACGGCCGCGGCGCCCAAGGACCAGC---CCGCCAACGGTTC---------------------CGA
GCAGGTCACGCGCCACTCCGAGGTCGGCCACAAGAGCCTGCTCCAGAGCGACGCCCTCTACCAGGTACTTGCTGCC----
--ACCGCACAACAAAATTTCGCTTCTTTCGCTCCATCCGTCTCCGGCGAGCTGGCCAGATCTCGCGGTTTCTGATACGGT
TTGATCTTGCGATTTCTGATGCGGTTTGGTCTGATTGTGC---------GCAGTACATCCTGGAGACGAGCGTGTACCCG
CGCGAGCACGAGTGCATGAAGGAGCTCCGCGAGATCACCGCCAACCACCCATGGTACGGACCTCTTTCTTCCTCATCTGC
CTTCGTCTCACCTCGGCCGGATCTGGCGTGACATCTTCTGATC----------AGGATCTCGTTTGTTTGCGCGTGCGTG
CGCGCAGGAACCTGATGACGACGTCGGCGGACGAGGGCCAGTTCCTCAACATGCTGCTCAAGCTCATCGGCGCCAAGAAG
ACCATGGAGATCGGCGTCTACACCGGCTACTCCCTCCTCGCCACCGCGCTCGCCATCCCCGACGACGGCACCGTAAGCTC
CCTCACTTCTCCGCTCCCAGATCCACCGCTCCCAATTCACCAAGAAACTGAAACCGGAATGAAA-------------CAG
ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTGGGGCTGCCGTGCATCGAGAAGGCCGGCGTGGCGCACAAGAT
CGACTTCCGCGAGGGCCCGGCGCTGCCGGTGCTGGACGCGCTGCTGGAGGACGAGGCCAACCACGGCACCTTCGACTTCG
TCTTCGTGGACGCCGACAAGGACAACTACCTCAACTACCACGAGCGCCTCATGAAGCTCGTCAAGCTCGGCGGCCTCCTC
GGCTACGACAACACGCTCTGGAACGGCTCCGTCGTGCTCCCCGCCGACGCCCCCATGCGCAAGTACATCCGCTACTACCG
CGACTTCGTCCTCGACCTCAACAAGGCCCTCGCCGCCGACCAGCGCGTCGAGATCTGCCAGCTCCCCGTCGGCGACGGCA
TCACCCTCTGCCGCCGCGCCAAGTGAACCA-----CAGAACCCGTCTCCGCCGCTCCGCCATAGACGCCAAGAACAAGAA
TTAATTAATTACTCCCCATTTTGTCTTTCCTGCTCGCCTTCTGTACTCTATATCTATCTTCTGCAATTCGTATAAAGATT
TCTCCAGACAAACGATT-AATATTGGTACTCCTATC--AGAAGA-TTTCTTCTTGTTTGCTTGCGACAATGGCGGCCGCC
GCCGCCGACGACGAC------------CCACCTGCGCAAATCAAAACATTCCATTTCGCCCCCCTGCTCGCTCGCTTGG-
---AAAACATGTCCAAATGCGGCGCCCCCGTCGAATCCGTTGAACAAATCATTTGCGACGTCTGGCAGGCACAATAAATT
TGACCGAATTTTACCCCTTTGGGCTGAAGATTTCCATCTTCTGACGGCGATGCACAGGGGTTCGTGGACGGTTTCGTCGA
CGGCGATAGCCTTGTGTTGTTGCGCAGA----------CATTTGTCTTTCCACAAGTAGATGACTGACTGGCA-------
----TGCATGATGCATGTGGCCAGTGATCTAGAAGTCGATCGATCGCTGGATGACAAAGGCCTCCTCAAATGTCAAAGTC
T-GAGTAAGAGTAGGTTGGAAGGAGAAGCTTCCTCCAATGGAAGAGTCAAGGTTTGTTCGGTTGCTGAGCTGCTCATGTG
AGGAGTTTATGACTTTTTGGCTGAACTGAATGGCTGATGTTACATCACATGGTCACCTAAATTATTGCTTTGATTTCGCT
TAAAATAAGTTCAGATCTAACAACACCGAGTACTAG-----------------GTGTGCTTGGATTGAAGTGTACTGAGT
ACTGGACAAGA------------------------------------GTGTTGGTGAAACCCATTATTTTAGGCTACCGT
ACGATAATTACCATTCTCTGAGATCAACTTGTGCCTTTTATTTGCGTTGGGATTTGGGTTCTTTATTCAACAAAAGCACA
CATGGCACAGTCCACCATAAGGCTACTGACCAGGAAAGGAGGTACTCCCTCTGTTTTTATTTAGTCTGCATATTAGGTTT
GACCGAAGTCAAACTTTGCAAAGTTTGACCAAGTTTATAGAAAAATATATAAATATTTACCATAACAAATCTAAATGATG
TGAAAGTACATTCAATAATGAATCTAGTGGTATTGATTTTTTATTGTATATATTAATATTTTTGT
>chr7D_891
TTCCTT--------------------------------------------------------------------------
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----------------------------CCTTCCTGCCTCCTCCCCTCTCGCCATCGGCCGCCCCTCCCCCTCCTGCTGC
CGCGCGCGGGCCAGCGCTCCTATATAAGCCACGCGTTGAGTCTCTTCCCGGCAAGCTCGTCAATCCAATCACCCAGCCAA
CCACCTCTCCCCTCCCCTGCAAGCTCAGCCCAGATCTCGTCTCCTT-CCTTCCTCGAACCAAGCATCACCAATGGCGACC
ACGGCAGCCGACGCCACGGCCGCGGCGCCCAAGGAGCAGC---CCGCCAG------------------CACCGGCGGCGA
GCAGGTCACGCGTCACTCCGAGGTCGGCCACAAGAGCCTGCTCCAGAGCGACGCCCTCTACCAGGTAGTACTTAGTTATA
CTACTGCACAAAAAAAA-TCGCTTCTTCCGCTCCATCCGTCTCCGGCGAGCCGGCCAGATCTCGCGGTTTCTGATGTGGT
TTGGTCTGATTGTTCC---------------------TGC---------GCAGTACATCCTGGAGACGAGCGTGTACCCG
CGCGAGCACGAGTGCATGAAGGAGCTCCGCGAGATCACCGCCAACCACCCATGGTACGGAG----TTCTTCCTCATCCGT
GTTCGTCTCGGCCCGGCCGGATCTGGCGAGACATATTCTGATC----------TGGATCTCGTCTGT-------------
-GCGCAGGAACCTGATGACGACGTCGGCGGACGAGGGCCAGTTCCTCAACATGCTGCTCAAGCTCATCGGCGCCAAGAAG
ACCATGGAGATCGGCGTCTACACCGGCTACTCCCTCCTCGCCACCGCGCTCGCCATCCCTGAAGACGGCACCGTAAGCTC
CTA-ACTTCTCCACT-CCAGATCTACCACTCCCAATTTACCAAGAAACTGAAGAAAAATGAAAATGAAACGGAAATGCAG
ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTGGGGCTGCCGTGCATCGAGAAGGCCGGCGTGGCGCACAAGAT
CGACTTCCGCGAGGGCCCGGCGCTCCCGGTGCTGGACGCGCTGCTGGAGGACGAGGCCAACCACGGCACCTTCGACTTCG
TCTTCGTGGACGCCGACAAGGACAACTACCTCAACTACCACGAGCGCCTCATGAAGCTCGTCAAGGTCGGCGGCCTCCTC
GGCTACGACAACACCCTCTGGAACGGCTCCGTCGTGCTCCCCGCCGACGCCCCCATGCGCAAGTACATCCGCTACTACCG
CGACTTCGTCCTCGACCTCAACAAGGCCCTCGCCGCCGACCAGCGCGTCGAGATCTGCCAGCTCCCCGTCGGCGACGGCA
TCACCCTCTGCCGCCGCGCCAAGTGAACGGACACGGAGCACCCGTCTCCG-CGCTCCGCCGTAGATGCCAAGAACAAGAA
TTAATTAATTTC-CCCCATTTTGTCTTTCTTGCTCGCCTTCCGTACTCTATATCTATCTTCTGCAATTCGTATAAAGATT
TCTCCAGACAAATGATCAAATAGTATTACTCCTATA--AAAAAGGCTTCTTGTTGTTTGCTTGCGACAATGGCTGCCGCC
GCCGCGGCCGCCGGCGCAGGTGATGATCCAATTGTGCAAATCGGAGTGTTCCATTTCGTTCTCCTGCCTGTTTGGAGGA-
---AAAACATGTCTAGATGCGGCGCCTTCGTTGAATCTGTTGAATGAATCATGGCAG----------GGCACAATAAATT
TGACCGAATTTTACTCCTTTGG-TTGAAGATTTCCATCTTCTGACGGGGATGCACAGGGGTTCGAGGACGG-TTCGTCGA
CGGCGACAGCCTTGTGTTGTTGCGCAGATATTTGCTGACATTTGTTTTTCTACAAGTAGGTGACTGACTGGCA-------
------------GCATGTGGTCG----TCTACAAGTCGATCGATCGCTGAATGACAAAGGCTTCCACATATGTCAAAGTC
TGGAGTAAGGGTAGGTTGGAAGGAGAAGTTTCCTCCAATGGAAGAGTCAAGGTTTGTTCGGTTCTTGGGCTG-TCATGTG
AGGAGTTTATGACTTGTTTGG----CTGAATGGCTGATGTTACATCACATGGTCACCTAAACTATTGCTTTGGTTTCGCT
TAAAATAAGTTCAGATCTAACAACATGTAGCAGTACAGTACATGTTATGGTACGTGTGCTTGGATTGAAGTGTACTGAGC
CATAGTGTTCTTTAACATGGAGTAGTATACTACTGGACTGGAAAAGGGTGTTGGTGAAACCCATTATTTTAGGCTCCCGT
ACGATAATC-CCATTCTCTGAGATCAACTTGTGCCTATTTA---------------------------------------
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>chr7B_997
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-------------------------------------------------GGCAAGCTCGTCAATCCAATCACCCAACCAA
CCGCCTCTA----------CAAGCGCAGCCCAGATCTCGGCTCCTTCCCTTCCTCGAACCAAGCATCAGCAATGGCGACC
ACGGCAGCCGACGCCACGGCCGCGGTTCCCAAGGAGCAGCAGCCCGCCAACGGTTCCGCGGCCGCCACCACCGGCGGCGA
GCAGGTCACGCGCCACTCCGAGGTCGGACACAAGAGCCTGCTCCAGAGCGACGCCCTCTACCAGGTACTACTTGCGT---
-------------------------------TCCAACCGTCTCCGGCGAGCTGGCCAGATCTTGCGGCTTCTCC------
---------------------CGGCTTGATCTGATCCTTGCGTGCGTTTGCAGTACATCCTGGAGACGAGCGTGTACCCG
CGCGAGCACGAGTGCATGAAGGAGCTCCGCGAGATCACCGCCAACCACCCATGGTATGTGTTC-----------------
GTCCATCTCGGCTCGCCTGGATCTGGTGTCATCGGTTCTGATCTGACGATTTCTGGATCTCGTTTGTGCGTGCGTGCGT-
---GCAGGAACCTGATGACGACGTCGGCGGACGAGGGCCAGTTCCTCAACATGCTGCTCAAGCTCATCGGCGCCAAGAAG
ACCATGGAGATCGGCGTCTACACCGGCTACTCCCTGCTCGCCACCGCGCTCGCCATCCCCGACGACGGCACCGTAAGCTC
CTTCTCCACA------CCAGATCTACCGCTCCCAATTTAGCAAGAAACTGAAGAAGAAATG----GAAACGGGAATGCAG
ATCTTGGCCATGGACATCAACCGCGAGAACTACGAGCTGGGGCTGCCGTGCATCGAGAAGGCCGGCGTGGCGCACAAGAT
CGACTTCCGCGAGGGCCCGGCGCTGCCCGTCCTGGACGCGCTGCTGGAGGACGAGGCCAACCACGGGACCTTCGACTTCG
TCTTCGTGGACGCCGACAAGGACAACTACCTCAACTACCACGAGCGCCTCATGAAGCTCGTCAAGGTCGGCGGCCTCCTC
GGCTACGACAACACCCTCTGGAACGGCTCCGTCGTGCTCCCCGCCGACGCCCCCATGCGCAAGTACATCCGCTACTACCG
CGACTTCGTCCTCGAGCTCAACAAGGCCCTCGCCGCCGACCAGCGCGTCGAGATCTGCCAGCTCCCCGTCGGCGACGGCA
TCACCCTCTGCCGCCGCGCCAAGTGAACCA-----GAGAACCCATCTCCGCCGCTCCGCCATAGATGCCAAGAACAAGAA
TTAATTAATTACTCCCCATTTTGTCTTTCCTGCTCGCCTTCTGTACTCTACATCTATCTTCTGCAATTCGTATAAAGATT
TCTCCAGACAAATGATT-AATAATAGTACTCCCCCCATAAGAAGCTTCCTTGTTGCTTGCTTGCGAC-------------
------------------------GATCCACCTGCGCAAATCAAAACATTCCATTTCGTTCTCC----CGCTCGCTTGGT
TGGAAAACATGTCCAAATGCGGCGCCCCCGTAGAATCCGTTGA--AAATCATTTGCGATGTCCGGCAGGCACAATAAATT
TGACCGAATTTTACCCCATTGGGTTGAAGATTTCCGTCTTCCGACGGGGATGCACAGGGGTTCGTG------------GA
CGGCGACAGCCTTGTGTTGTTGCGCAGATATTTGCTGACATTTGTTTTTCTACAAATAGGCGACTGACTGACTGGCAACG
CATCTGCGTGATGCATGTGGTCG----TCTGGAGGTCGATCGATCGCTGAATGACAAAGGCTTCCTCAAATGTCAAAGTC
TC----------------------GAAGTTTCTTTCTATGGAAGAGTCAAGGTTTGTTCGGTTGTTGAGCTGCTCATGTG
AAGAGTTTATGCTTG--TTGG----TTGAATGGCTGATGTTACATCACATGGTCACCTAAATTATTGCTTTGATTTCGCT
TAAAATAAGTTCGGACCTAACAACACGGAGTA------------------------------------------------
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>SNPs
S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S--------SS----------------S----------S-----
-------SS---------S--------S--S-----S-----------------S--------------------S----
---S--------S--S-----S-------------------S--------------S--------S----------S---
-----------------------------------S--------------------------------------------
---------------------------------------------------------------------SSS---S----
----S------S----SS---------S-----------------------------------------------SS---
---S---SSSSS--S-SSSSS---S---S------SS-------------------------------------------
------------------------------------------------------------SSSSS------------S-S
S--------SS-----------------------S------------------S-------------SS-S--------S
S-------------------------------------------------------------------------------
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-S----------S--S-------S-------------S--------------SSS-S-----------------------
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-----------------------------------------------------------------S--------------
--------------S-----------------------------------------------------------------
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-----------------------------------S-----------------------------S--------------
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------------S---------S-S--------------S--SS-------S---------------------S------
-----S-S--S--S--------------------------------------------SS-S-----S------------
-------------------------------S------------S-------------S---S-----------------
-----------------------S-----------------------S-----------------------S--------
------S--------------------------------------S----S--------S--------------------
-------S------------S-SSSSS----------------------S-----------S------------------
---------S------------------S-----------------------------------S---------------
---------------S--S-SSSSS-------------------------------------------------------
--------------------------S-----S--S-------------------------------------------S
SS-S-SSSSSS----------------------------------------------------------------S----
--------SS--------------------------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_221
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-----------------------------------------CTTCTCGCTGCTTTCCCTCA-------------------
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>reverse_1381
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--------------------GCGGTTTGGTCTGATTGTGC----------------------------------------
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>forward_626
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----------------------------------------------CGGAGGTCATCAAACCACGA--------------
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>reverse_2548
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-------------------------------------------------------------------TCGCTCGCTTGGA
AAACATG-------------------------------------------------------------------------
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