>input_sequence_54477
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TGTCTCTCG---------------CGCCTCCTCTGCTCCGCCTCCGCGCCCCCCGCCCCGACGCCGCCCTCTCCACCGCC
GTCCCGTCCCGCCCTCTCCCTGGATGCCTCGCCATCGGGCGGGGTCTCGGCTCCGGCCGCGCCTACTGCCTCTTCTCCGG
CGCCGGCGCCGGCCGCCGGAAGCAGGTGCGCGCAGCGTCCGTCTCTTTACCGAATCAATCATCTTCCGTGAGCAAGATCT
GGCCGGCTTTTAGATTTTTTTTTTCTGGGTTCAGATTTTGGACTGATGGCTGTATTCGGTGGCTGCGCGGAGACA----T
AACCTGCTAAATGCTAGCATCGACATTGTTCCTGTCTACGTAGTTAATAATCTTAATCCTGCATCGGGTTAGCAGTCGAG
GCTGATGTTGGATTGCTGGAACACATTCAGAATGATGGATTGATGAGTGATGTTTTTTAATCT------TGTAAGAACAT
GGCCAAACAGAATCAGGAT--------TCCTGCAAGT-----------ACCTTGTTGGTTGAGATTTGATGGTTGCAGAC
AGCCT-GAATTTTCTCAACTGTGCACTGTTAAGTAGTAGGAGTATTAAACTGCCCTCTTTGATTTGTGATAGGCATTGCT
GGACTGCGTTCTCGATAAGTATATGTTTGGTG--TTTATTCCTGCGAGAATCCAGTGTTACTCGCA-------ATCTTCA
ATGGTTAAACAG-CCAGAGCAACAAAAATATCGACA-----AGCTGTGTCCTTTCCTTGCAGGAGGAAGCTAGGAGAGGG
CTGGAGAGTGCCGTAGACCAGAACAAGACGGGGTTCGGGACATGGGGCGTGGAAACTGTTACAAGGCGGCTAAGAGACCG
GCGTGGTGGCCCTGCTCCTGC------TGTCGGTGGCGGTGGCAGGGGAAGGTCTGGAGGAGGAGGTGGTGGAGGTGG--
-------------AGGTGGTTGGTTCAGGTGGTTTAGCAGTGGAGGCTTCTGGGACGCTGCGAAGCAGACTGTTCTGACG
ATCCTTGGCATTATCGCGGCGGTAAGCGGGGAATGTCCTGTGTTACTATGTCTAGTCCTTTCTGTAAAACATGCTTATAT
AGTAGTGCTAACACTTGCTCAACTTTGCATTGCAGGTCTTCCTCATCGCGAATTTCAACGTGCTTCTGGGGGCTGCCGTC
TAC-------CCGTTGCTGGTCGTGCTGCGGCAAATAAGGCGCGCACTCACCTTTGCGGCTTATTGTGTTTCTCGGGCCA
TGTCGGCACCCGCTTCCAGGCCGAAGCCAACTC-----------------------------------------------
------------------------------CTGTAGACAGCGCTGAAGTGG----------TGGCCGCAGCGCCTGTCAA
AGAAAGAGCCAGAATGTCTGCAAGAGAAAGAGTTGTTGCGAAATGGCGTTCGGACTGA----------------------
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>chr4A_1_TraesCS4A01G306300
CTACCCCTGTCGCCTCTCGCTCGGACTGCTCAATGCCGAGCCAGAGCTGCTTGGCATTGTTCCTCCGGAGCCGTTAGGCG
TCTGTCTCCGTCGTGGTAAGTGACTGATGATACACGCACTGGAGGAAACGCTCATCCTCCTCGGGCAC---CGGCATCAT
GTGGCGG-------CGGACTGCACAACCGCATCGGACACGG-CCCAATCTTCCTTGCCCTCTTCCTCCCACGGGGGGTGG
CGCGTGACTGTGATTCCGGAGTCCG---CAC----GTGGTGC-CGGCGGAGCGGGAACTAGAACCCACCGCTATCCGCGC
GAAGCAGGGGCCGAAGATTGAGGAGGCTGTCGGACGGGCGACGCCGATTGAGCTGCCCTCGCAGATACATGCACGGGGCG
GG-AAGGGCCGGCGCTGGCATTGGCGCTGCGGCGACG-------GGCGGCATCGCACCAGAATCGGAGCTACCGCATTTC
TCGACCCGCGAGCGCTCCAGCGCGATACAGACCGCCAACTCGTCCTCGTCTCTGGAGCAACCATCAGAGTGGCCGCCGGC
GCTGGGATTGGACGGATTAGAAAAAGGCAAGCAGAGCAGAGTAAAGTGGAATGAAGTGAGCCTAGAGCTTGCTCCGGAAA
GAGATTTTGTGGAGTCGAGTGGTCGGACGGACGTGGCGTATGCGCCCGGGCGTGCCCGGGCCTCCTCATACTGCCTTAGA
TTTGGGCTGGATATGAGGGGTGCCGGCCAGCCGGGCGTTTGAGGCTGGTTTGGGGCGTCCGGTTGGGTAGCATTTTCGTC
ATCTGTCAGTGATCGATCCGTCCGTCCGCCCGGGTGTTTGAGACGGGTTTGAGACACCCGGCTGTACAACTAACAGAGT-
TCTTTTTACATGAACAGAGTTTGTTTTTGCCCTCAAAAAA-TAGTGAAAAATAACAAGCCCTAATCTTGTGTGGGACCCA
TGTGCTAGAGACTGGAGAGCAGGCTCAGTGGCCAGCCAAG---------AAAGCCATAGCCCGGAGCTT-AGATTAGCCA
TGTCTCTCG---------------CGCCTCCTCTGCTCCGCCTCCGCGCCCCCCGCCCCGACGCCGCCCTCTCCACCGCC
GTCCCGTCCCGCCCTCTCCCTGGATGCCTCGCCATCGGGCGGGGTCTCGGCTCCGGCCGCGCCTACTGCCTCTTCTCCGG
CGCCGGCGCCGGCCGCCGGAAGCAGGTGCGCGCAGCGTCCGTCTCTTTACCGAATCAATCATCTTCCGTGAGCAAGATCT
GGCCGGCTTTTAGATTTTTTTTTTCTGGGTTCAGATTTTGGACTGATGGCTGTATTCGGTGGCTGCGCGGAGACA----T
AACCTGCTAAATGCTAGCATCGACATTGTTCCTGTCTACGTAGTTAATAATCTTAATCCTGCATCGGGTTAGCAGTCGAG
GCTGATGTTGGATTGCTGGAACACATTCAGAATGATGGATTGATGAGTGATGTTTTTTAATCT------TGTAAGAACAT
GGCCAAACAGAATCAGGAT--------TCCTGCAAGT-----------ACCTTGTTGGTTGAGATTTGATGGTTGCAGAC
AGCCT-GAATTTTCTCAACTGTGCACTGTTAAGTAGTAGGAGTATTAAACTGCCCTCTTTGATTTGTGATAGGCATTGCT
GGACTGCGTTCTCGATAAGTATATGTTTGGTG--TTTATTCCTGCGAGAATCCAGTGTTACTCGCA-------ATCTTCA
ATGGTTAAACAG-CCAGAGCAACAAAAATATCGACA-----AGCTGTGTCCTTTCCTTGCAGGAGGAAGCTAGGAGAGGG
CTGGAGAGTGCCGTAGACCAGAACAAGACGGGGTTCGGGACATGGGGCGTGGAAACTGTTACAAGGCGGCTAAGAGACCG
GCGTGGTGGCCCTGCTCCTGC------TGTCGGTGGCGGTGGCAGGGGAAGGTCTGGAGGAGGAGGTGGTGGAGGTGG--
-------------AGGTGGTTGGTTCAGGTGGTTTAGCAGTGGAGGCTTCTGGGACGCTGCGAAGCAGACTGTTCTGACG
ATCCTTGGCATTATCGCGGCGGTAAGCGGGGAATGTCCTGTGTTACTATGTCTAGTCCTTTCTGTAAAACATGCTTATAT
AGTAGTGCTAACACTTGCTCAACTTTGCATTGCAGGTCTTCCTCATCGCGAATTTCAACGTGCTTCTGGGGGCTGCCGTC
TAC-------CCGTTGCTGGTCGTGCTGCGGCAAATAAGGCGCGCACTCACCTTTGCGGCTTATTGTGTTTCTCGGGCCA
TGTCGGCACCCGCTTCCAGGCCGAAGCCAACTC-----------------------------------------------
------------------------------CTGTAGACAGCGCTGAAGTGG----------TGGCCGCAGCGCCTGTCAA
AGAAAGAGCCAGAATGTCTGCAAGAGAAAGAGTTGTTGCGAAATGGCGTTCGGACTGAATTAGA----------------
-GGACATTTCAATGCCTTGTTTTTTT-----------GGCCGGTCAGATAGTTTTCAAACCATGACTGTATAAGTTCTAT
TTCTTTTCTTCGTTGGCAG----------GAGCCTTTAAATTAGAAGTAGATGGTGTTACAGCTATTTACAGGTGGCCAT
TTGAATGGTTCAGTTA-TAAGCACTATTTGTGTGGAAGATACCTTGGAAATACCACATTTAATTGCAG------------
-------TCTGGACTTGATCGGCAATATATATGGTTATACAGGCAGCTTTCAACAGCAGCAGACTAACACTGCCCAGTCT
GAACTTAGAGAGTGTTTTCAGTTC----TCAACTTTGATCCTGTTTTCAGTTCATGTTCCAAGCAACTTTCCTATGTGAA
TCTGAGTAGCTCACTGGAA-------------------------------------------------GATCATAAACGG
ACCCCGGTTCAAGTTATGATGCTGATT--TGTGTGCTGCAGCATCGTCCATTATCTTTGATTTCAAGCAGTTTCATGTCA
AATGGAATACATTTTGC---------------------------------------------------------------
--------------------------------------CTTTGTTTACGACAGTATACATTGATAGGTTAAGCATGTACT
TAATTTTAGTATC---AGAACAAGATGTGCAATGAGCAGTT-CACTAGAGATTGTGCATAGAGAAACAACAGCTTATATT
GCATATTATTAGAGAGATTCCTGTGTCAATCTGAGAAACTCACTGAAAGCTGCAGGTTATATTGCAAATTCAGGCTATCG
AGTCAAGTTTCAGACTGATCATGAGTAGACCCCAAATTTCAGTTATGATGTTGATTTGTGTGCTGCATCATAGATCATAT
CTTTGGTTTCAAGCATTTACAGCGCAAATTATAAACAT-TTTTTCTTTCTTTGTGACAGTACACATTGACAGATCAGAAC
-AAGATGTGCAGTGAGCAATTCCACTAGAGATTGTGCATAGAAAACCAGCACCTTCCAATCAACTTATTCATGTGCTACC
ATTAACCCAAAAACAGTATATTTCACCAAAGGTGGTAATTTAAATAGCACCAAGAAGAGGTTTCTAATTTGAGCTAGC
>chr2D_5
CCCTCGC---CGCCTCCCGCTCGGACTGCTCAATGCCGAGTCGGAGCGCCTTGGAGTTGATCCT-CGAAGCCGGTGGGCG
TCTGTCTCCGCCGTCGTAAGTGACAGGCGGTACAACCACTAGAGGGGACACTCATCCTTGTTTGGCACGTCCGGCATCAC
GCGGTGTTAGCGGGAGGACTGCGCTGCCGCATCCGACGCGGCCCCCATCTCCCTTGCCCTCTGCCTCTTGTGGCGGGCAG
TGCGCGCCTCCGATTCCGGAGTCCA---CATCCGTGTGGTGC-CGGTGAAGCGGGCACTAGAACCCATGGCTGCCTGCAC
GGAGCAGCGGCCGTAGGTGGAGGAGGCCAATGGACGGGCGACGCCGATTGAGCTGCCCTCACAGATCCGCACGC-GGGGC
GG-AAGTGCCGGCACCGGTGTCGGCGATGTGGCTGCAGGTGATAGGCGGCGTCGCACCTGAACCGGAGTTGTCGCTCGTA
TCCACCCGCAAGCGCTCCCGCTTGATCCAAAGCACCAGCTCGTCCTCGTCTTCGGAGC----------------------
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>chr3D_5
CCCTCGC---CGCCTCCCGCTCGGATTGCTCAATGCCGAGCCAGAGCTGCTTGGCGTTGAGCCTCCGGAGCCGTCGGGCC
TTCGCCTCCGCCTTAGTCAGTGACT-GCGACACACCCACTCGAAGAGACGGTCCTCGTCGTCGGCCAC---C--------
-CGGCGGCGGCGGGCGTACTGTCCAAACACGTCGGACCTGCCCACCATCGCCCTTGCCCTTTGCCTCTCGCGGCGGGCAG
CTCGTGCCTCCGACTGCAGAGTCTGCATC---CGC--AGCGT-CGGCTGAGTGGGCACTAGAACCCAGCGCTGCACGCGC
GGAGCAGCGGCTAGAGGTGGAGGAGGCTGTCAGTCGGGAGGAGCAGATTGGGCAGGCATCGCAGATCCGCGTGC-GGGGC
GGGAACGGTCGGCGCCGGCATCGGCGCTGCCGCGACGGGCGAAAGGGGGCGTCGCACCGGACCCGGAGCTGCCGCCCGTA
TCGACCCGCG--------AGCGCGATACGGAGCGCCAGCTCCTCCTTGTCTCCGGAGCTACA------------------
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-----------------------------------------------------------------------------GTC
GGAGTGGCTGCCGGTGCTGG------------------------------------------------------------
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>chr1A_9
--------GTCGCCTCCTGCTAAGACTGCTTAATGCCGATCCAGAGTTGCTTGGTGTTGATCCTCCGAAGCCGCCGGGCC
TCCGTCTGTGCTTTGGTAAGTGACTAACGTTACACCCACCGGAGGAGACGCTCCTCCTTGTCAGGCAC---TGGCTTCAT
GTGGCGGTATCGGGCAGACTGCGCAACCGCGTCGGACGTGACCCCCGTCTCCCTTGCCCTCTGCCTCACA--GCAGGCAG
CACATGCCTCCGATTCCGGAGTTCG---CATCCAC--AACGT-TGGCGGAGAGGGCACTAGAACCCACTGCTGCCTGCGT
GAAGCAGCGGCCGGAGGTGGGGGAGGCCGTCGGGCGGGCGGCGCTGATTGGGCTGCC-TTGCAAATCTGCGCAC-GGGGC
AGGAAGGGCCAGCGTTGGCGTCGGC--------GAGGGGCGACAGGCGGCATCGCTCATGAAATGAAGCTGCCGACCGTA
TCGACCCACG--------AGCT----------------------------------------------------------
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-----------CTCTAGCGCGATTCTGAGCGGCAGCTCGTCCTCATCTCC------------------GGAGTTGCCATC
GGAATGGCTACGGGTGTTGGACATGGTC----------------------------------------------------
-ACCGGCGCTCGGGATTG-ACGCACTGGAGAAAGTGGAGCTGAGCTGAGCGGAGTGAAGTGAGCCCAGCGTTTGCTCTGG
AGGGGGATTTTGTGGGGTCGGGTGGACCAGAGATGGGCCGGATGGAAGTGG----------GGGACACGCCCGGGCCGCC
TCATATCCGCCCTAGA--------------------------------TTTGGGCTGGATATGAGGGGTGCCGGTCAGCT
CGGGCGTTTGAGGCGGGTTTGGGGTGCACCGTTGGGTCG-----------------------------------------
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------------------------------------------CATTTTC-------------------------------
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>chr5A_11
----------CGCCTCCTGCTCGGACTGCTCAATGCCGAGCCAGAGATGCTTGGTGTTGATCCTCCAGAGCCAACGCCCG
TCCGTTTCCGCTGTGGTAAGTGCCCGACGGTACACCCACTGGAGGAGACACTCCTCTTCGTCGGGCCC---CGGCATCAT
GCGGTGGGGGCGTGCCGACTACGTAGCCGAGTCAGACGCGGCCCCCATCTCCCTTGCCCTCTGCCTCTCGCGGCGGGCGA
CGCGTGCCTCCGATTCTGGAGTCCG---CATCTGC--GACGC-CGGCGGAGCGCGCACTAGGACCCATCGCTGCCCGCAC
GGGGCAGCAGCCGGGGTTGGATGAGGCCGTCGGGCGGGCGGTGTCGATTGAGCTGCCCTCGCAGATCCGCATGC-AGGAC
GGGAATG------GGTGGCGTTGGCGCTGCCGTGACAGGCAACACGCAGCATGACACTTGAACCAGAGCTGTCGCCT-TA
TCAACCCGTC--------AGTG----------------------------------------------------------
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-----------CTCTGGCGCGATATGGAGCACCATCTCATCCTCATCTCC------------------AGAGATGTCGTC
AGAGTGGCTGTCGGTGCTGGACATGGTC----------------------------------------------------
-GTCGGCGCTTAGGATTGGACGGATTGGAGAAGGGAAGG-AGAGCGGAGCAGAATGAAGTGAGTCTAGGGTTTGCTCCGG
AGGGGTTTTTTGTGGGGTCGGGTGGGCCAGAGGTGGGCCGGGCGGACA---------CGCCCGGACACGCTCGGGCCGCC
TCATATCCACCCTAGA--------------------------------TTTGGGTTGGATACGAGGGGTGTCGGTTAGCC
TAGGCGTTTGAGGGTGGTCTGAGGCGTCTGGTTGGGTCA-----------------------------------------
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------------------------------------------CTTTTTTTGTGATCGATCAGTGAC--------------
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---------------------------------------------------------TAGACGGCCTGCCCAGGCGTTTG
AGACGGGTTTTAGAGGTCCGACTGTA------------------------------------------------------
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>chr2B_13
------------CCTCCCGCTCGGACTGCTCAATGCCGAGCCAGAGCTGCTTGGTGTTGATCCTCCGGAGCCGGCGGGCG
TCCGTCTATGCCATGATAAGTAACCGTCGGTACACCCACTTGAGGAGAAGCTCCTCTTCGTTGGGCAC---CGGCATCAC
GCGGTGGCGGCGGGCGGACTGCGCAGCCTGGCCAGACACGGTCTCCATCTTCCTGGCCATCTGTCTCTTGCGGCAGGCGG
CGCGTGCCTCCGATTCTGGATTCCG---C---CGC--GGCGC-CGGCAGAGCGGCCACTAGAAGCCACCGCTGTCAGCGC
GAATTAGTGGTCGGAGGTGGAGCAAGTCGTCGAGCGGGCGGCGCTGATTGAGCTACCCTCGCAGATCCGCGTGC-GGGTT
GGGAAGGGCCGGCGCTAGCGTCGGTGCTGCAGCGATGGGCGACAGGTGGCCTCACACTTGAACAGGAGCTGCCACCCCTA
TCGACCCATG--------AGCG----------------------------------------------------------
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-----------CTCCAGCGCGATAAGGACCGCCAACTCGTTCTCGTCTCC------------------GGAGCTGCCGTC
GAAGTGGCTGCCAGTGCTGGACATGGTC----------------------------------------------------
-GCCGGCGCTCAGAATTGGACGGGTTGGGGAAAGAGAAGCAGAGCGAAGTGGAGTGAAGTAAGCCTACGGTTTGCTCCGG
AGAGGAATTTTGTGGGATCGGGTGGGCCAGAGGTGGGCCGCGCGGACGTGGCGGGTGCGCCCGAGCGCGCCCCGGCCGCC
TCATATCTGCCCTAGA--------------------------------TTTGGGCTGGATATGAGGGGTGCCGGTTAGCC
CGGACATTTGAGATCGTTTTGGGACACCCAGTTGGGT-------------------------------------------
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>chr2D_204
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------------------------------------------------------TGCCGTCTGCCTCTCGCGGTGGGCGG
CGCGTGCCTCCGACTCCGGAGTCCG---CATCCGC--GGCGCGCGGCGGAGCGGGCACTAGAACCCACCGCTGCCCGCGC
GGAGCAGCGGCCGGAGGTGGAGGAGGCCGTCGAGCGCGCGGCGCCGATTGGGCTGCCCTCACAGATCCGCGCGC-AGGGC
GGGAAGGGCCGGCGCCGATGTCGACGCTGCGGCGAAGGGCGACAGGTGGCGTCGCACCTGAGAAGGAGCTGCCGCCCGTA
TCGACCCGCG--------AGCG----------------------------------------------------------
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-----------CTCCAGCGCGATACGGAGCACCAGCTCGTCCTCATCTCC------------------AGAGCTGCCATC
GTAGTGGCTGCCGGTGCTGGACATGGTC----------------------------------------------------
-ACCGGCACTAGGGATTGGACGGATTGGGGAAAAG----------GGAGCGGAGTGAAGTGAGCCTAGGGTTTGCTCCGG
AGGGGGATTTTGTGAGGTCAGGGTGGCCAGCGGTGGGCCGAGCAGACGTGG----------CGGACGCATCCGGGCCGCC
TCATATGCGCTCTACA--------------------------------TTTGGACTGGATATGAGGGGTGCCAGTCAGCC
CAGGCGTTTGTCCACTGTTTGAGAGCTCCGGTTGGGTCG-----------------------------------------
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------------------------------------------CTTT-TTTGTGACCGGTCAGTGAC--------------
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---------------------------------------------------------CAGACGGTCTACCCGGGCGTTTA
ATATGTGTTTGAGAGGTCCGGCTGTA------------------------------------------------------
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>chr4B_843
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---------------------------------------------------------------------CTAACAGAGTT
TCTTTTTTCATGAACAGATTTTGTTTTTGCCCTAAAAAAATTAGTGAAAAACAACAAGCCCTAATCTTGTGTGGGACCCA
TGTGCTAGAGACTGGAGAGCAGGCTCAGTAGCCAGCCAAG---------AAAGCCATAGCCCGGAGCTTCAGATTAGCCA
TGTCCCTCGCGCCTCCTCCGTGCCCGCCTCCTCTGCTCCGCCTCCGCGCGCCCCGCCGCGACGCCGCCCTCTCCGCCGCC
GTCCCATCCCGCTCTCTCTCCGGATGCCTTGCCATCGGGCGGGGTCCCGGCTCTGGCCGCGCCTACTGCCTCTTCTCCGG
TACCGGCGCCGGCCGCCGGAAGCAGGTACTCGTGGCGCCCGTCTCTTTACTAGACCAATCATCTTCCGCGAGCAAGATCT
GTCCGGGTTTTAGAT----TTGCTCTGGGTTCAGATTTTGGGCTGATGCCTTTGGCTGGCG------AGTGCAAGGTGTT
AACCTGCTAAATGCTGCTGAAACTGTAGCTAGAATTCAGT----------TCTTAATCCTGCGTTGAGTTGTCAGTTGAG
GCTAACGTTGGG--------ACACATTCAG-ATGCTGGATTTCTGTGTGATGTTTTGTTTTTAATCTTGTGTAAGAACAT
AGACAAATCGAATTGGGATGATACTGTTCCTGCAAGTACCATGTTTTGACCTTGTTGGTTGAGATTTGATGGTTGCAGAC
AACCGAGATTGTTCTGAACTGTACACTGTTAAGTAC------TATCAAACTGCCCACTTTGATCTATGATAGGCATTGTT
GGGCTACAATCTCGATAAG--TATAAAATTGACATTTATTCCTGCGAGAATCTAGTGTTACTTG--------TATCTTCC
ATGGTTAGACAATCAAGAGGAACAAAAATATTAACATAACCAGTTGTGTACTTTCC-TGCAGGATGAAGCTAGGATAGGG
CTGGAGAGTGCATACGACCAGAAAAAGACGGGGTTCGGGACATGGGGCG---------ATACAAGGCGGCAAAGAGACTG
GCGTGGTGGTCCTGCTCCTGCTGCCGTTGGCGGTGGTGGTGGCAGGGGAAGGTCTGGAGGAGGAGG------AGGAGG--
-------------TGGTGGTTGGTTCAGGTGGTTTAGCAGCGGAGGCTTCTGGGACGCGGTGAAGCAGACCGTTCTGACG
ATCCTCGGCATTATCGCGGCGGTAAGCGGGGAATGTCCTGTGTTACTATATCTAGTCCTTTCTGTAAAACATACTTATAT
AGTAGTGCTAACACTTGCTCAACTTTGCATTGCAGGTCTTCCTCATCGCGAATTTCAACGTGCTTCTGGGAGCTGCCGTC
TAT-------CCGTTGCTGGTCGTGCTGCGGCAGATACGGCGCGCAATCACCTTTGCGGCTTATTGTGTTTCTCGGGCCA
TGTCGGCGCCCGCTTCCAGGCCGAAACCAACTC-----------------------------------------------
------------------------------CTGTAGACGACGCCGAAGTGG----------TGGCTGCAGCGCCTGTCAA
AGAAAGAGCCAGAATGTCTGCAGCAGAAAGAGTTGTTGCGAAATGGCGTTCGGACTGAATTAGA----------------
-GGATATTTCAATGCCTTGCGAGTTATACTGTTTTTCCGCTGGTCAGATAGTTTTCATACCATGACTGTACAAGTTCTAT
TTCTTGTTTTCGAGTAAGTGGCAGGAGCGA--ACTTTATATTAGAAGTAGATGGTGCTACAGTTATTTACAAGCAGACAT
TTGAATGAGTTAATTA-TAAGCACTATTTCTGTGCAAGATACCTCGGAAAGTCCACATTTACTTGTAGCTGGTGGTTGGA
TTTGAGCTCTGGACTTGATCGGCGATATATATGGTTATACAGGCAGCTTTCAACAGCAGCAGACTAGGCCTGCCAAGTCT
GAACTCTGAGAATGTTTTCAGTTCATGTTCAACTTTGGTCCTGTTTTCAGTTCATGTTCGAAGTAACTTTCCTGTGTGAA
TCTGGGAAGCTCACTGAAACCTATGTTTCGTTGTGCATATTCAGCCTATTCGGGCCGAGTTTCAGGATGATCATAAATAG
ACCTCACTTTAAGTTATGATGCTGATATGTGTGTGCTGCACCATCGTCCAT-ATCTTTGTTTTCAGGCAGTTTCATGGCA
AATCAAATACTCCTTCCGATCCAAAATAAGTGTCAGCCATATCTTTATTTTTTATCGGAGGTAGTAGTATGTTTTTCTTT
GTTTACGGCAGTACACATGGAGGTAGTAGTATGTTTTTCTTTGTTTACGGCAGTACACATTGACAGGTTAAGCATGTACT
TAATTTTCATATCAGAAGAACAAGATGTGCAATGAGCAGGTCCACTAGAGATTGTACATAGAGAAACAACAGCTTATATT
GCATATCATTAGAGAGATTCCTGTGTCAATCTGAGAAACTCACTGAAAGCCGCAGGTTATATTGCATATTCAGGCTATCG
AGTCAAGTTTCAGACTGATCATGAGTAGACCCCAAATTTCAGTTATGATGTTGATTTATGTGCTGCATCATAGTTCATAT
ATTTGGTTTCAAGCATTTACAGGGCAAATTATAAACATATTTTTCTTTCTTTGTGACACTACACATTGACAGATCAGAAC
AAAGATGTGCAGTGAGCAATTCCACTGGAGATTGTGCATAGAAAACCAGCAGCTTCCA--CAACTTATTCATGT-CTACC
ATTAACCCCAAAACA---TATTTCACCACAGGTGTTAATTTAAATAGCACGAAGACGAGGTTCACAATTTGACCTAGC
>chr4D_893
TAGTG---------------------------------------------------------------------------
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-----------------------------------------------AAAATAAGATGCCCTAATCTC-TGTGGGGCCCA
TGTGCT-----CTGGAGAGCAGGCTCAGTGTCAGTAGCCAAGCCAGGAAAAAGCCATAGCCCGCAGCTTCAGATTAGCCA
TGTCCCTCGCGCCTCCTCCGTGCCCGCCTCCTCTGCTCCGCCTCCGCGGCCCCCGCCGCGACGCCGCCCTCTCCGCCGCC
GTCCCATCCCGCCCTCTCTCCGGATGCCTCGCCACCGGGCGGGGCCCCGGCTCCGGCCGCCCCTACTGCCTTTTCTCCGG
CGCCGGC------CGCCGGAAGCAGGTGCGCGCACCGCCCGTCTCTTTACTAGACCAACCATCTTCCGCGAGCAAGATTT
GGCTGGGTTTTAGAT----TTTCTCTGGGTCCAGACTTTGTACTGATGGT----TTTGGTGGCTGCAAGTGCAAGGTGTT
AACCTGCTAAATGCTGTTGAAACTGTAGCTCGAATTCAGT----------TCTTGATCCTGCATTGAGTTAACAGTTGGG
GGTAAT--------GCTGGAGCACATTCAGAGTGCTGGATTGCTGAGTGATGTTCTGTCTTTAT----------------
----AAATCGAATTAGGATGATACTATTCCTGCAAGTATCGTGTTTTGATCTTGTCGGTTCAGATTTGATGGTTGCAGAC
AGCCT-GAATTTTCTGAACTGTGCACTGGTAAGTAGTAGGAGTATTAAACTGCCCTCTTTGATCTGTTATAGGCATTGCT
GGACTATGTTCTCGGTAAGTATATAAAACTGACGCTTGTTCCTGCGAGAATCCAGTGTTACTCGTATAGTCATATCTTCC
ATTGCTGACAGTCTGGGTAAG---AAAATGTCAACATGACCAGTTGTGTGGTTTCCTTGCAGGAGGAAGCTAGGGGAGGG
CTGGAGGGTGCCGTAGACCAGAACAAGACGGGGTTCGGGACATGGGGCGTGGAAACTGATACAAGGCAGCGAAGAGACCC
GCGTGGTGGTCCGGGTCCTGC------TGCCGGTGGCGGTGGCAGGGGAAGGCCTGCAGGAGGAGG------AGGAGGAG
GAGGTGGAGGTGGAGGTGGTTGGTTCAGGTGGTTTAGCAGCGGAGGCTTCTGGGACGCGGCGAAGCAGACCGTTCTGACG
ATCCTCGGCATTATCACTGCGGTAAGCGGGGAATGTCCTGTGTTACTATGTCTAGTCCTTTCTGTAAAACATACTTATAT
AGTAGTGCTAACACTTGCTCAACTTTGCATTGCAGGTCTTCCTCATCGCGAATTTCAACGTGCTTCTGGGGGCTGCCGTC
TAC-------CCGTTGCTGGTCGTGCTGCGGCAAATACGGCGCGCACTCACCTTTGCGGCTTATTGTGTTTCTCGGGCCA
TGTCGGCGCCCGCTTCCAGGCCGAAGCCAACTC-----------------------------------------------
------------------------------CTGTAGACAGCGCTGAAGTGG----------TGGCTGCAGCGCCTGTCAA
AGAAAGAGCCAGAATGTCTGCAGCAGAAAGAGTTGTTGCAAAATGGCGTTTGGACTGAATTATA----------------
-GGACATTTCAATGCCTTGCGAGTTACCCTGTTTTCGGGCTGGTCAGATAGTTTTGATACCATGACTGTACAAGTTCTGT
TTCTTGTTTTCGAGTAAGCGGCAGGAGCAGAGACTTTATATTAGAAGTAGATGGTGTTATAGCTATTTATAA--------
TTGAATGGGTTAATTTTTAAGCACTATTTCTATGGAAGATACTTTGTAAATTCCACATTTACT------TGTTGGTTGGA
TTTGGGCTCTGGACTTGATCGGCGATATATATGGTTATACAGGCAGCTTTCAACAGCAGCAGACTAAGTCTGCCAAGTAT
GAACTCTGAGAATGTTTTCAGTTCATGTTCAACTTTGGTCTTGTTTTCAGTTCATGTTCGAAGCAACTTTCCTATGTGAA
TCTGAGAAGCTCACTGAAACCTATGTTTCGTTGTGCATACTCAGCCTATTCGGGCCGAGTTTCAGGATGATCATAAATAG
ACCTCACTTTAAGTTATGATGCTGACTTGTGTGTGCTGCACCATCGTCCAT-ATCTTTGTTTTCAGGCAGTTTCATGGCA
AATCAAAAACTCCCTCCGATCCAAAATAAGTGTCGTCCATATCTTTATTTTTTATCAAAGGCAGTAGTATATTTTTCTTT
GTTTACGA------------------------------------------CAGTACACATTGACAGGTTAAGCATGTACT
TAATTTTTGTATCAGAAGAACAAGATGTGCAATGAGCAGTTGCACTAGAGATTGTGCAAAGAGAAACAACAGCTTATATT
GCATATTATTAGAGAGATTCCTGTGTCAATCTGAGAAACTCACTGAAAGCCGCAGGTTATATTGCATATTCAGGCTATCG
AGTCAAGTTTCAGACTGATCATGAGTAGACCCCAAATTTCAGTTATGATGTTGATTTATGTGCTGCATCATAGTTCATAT
ATTTGGTTTCAAGCATTTACAGCGCAAATTATAAACAT-TTTTTCTTTCTTTGTGACAGTACGCATTGACAGATCAGAAC
-AAGATGTGCAGTGAGCAATTCCACTAGAGATTGTGCATAGAAAACCAGCAGCTTCCAATCAACTTATTCATGTGCTACC
ATCAACCCCAAAACAGTATATTTCACCAAAGGTGGTAATTTAAATAGCACCAAGACGAGGTTTCTAATTTGAGCTAGC
>SNPs
-SSS-S-S--------S--------------------------------------S---S---------------S----
----------S----------------S-------S----------S------------S--------------------
----------------------S----------------------S----------------S----S-----S---S--
------S--SS-------------------S------------------------S----------------S-------
-------S-----S--S-S-----------------------------------------------S-SS----S---SS
----------------------------------------------------------S---S-------S----S-S-S
-------------------------------S-----S--------------S-----S--SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------
-------S----------S--------------S----------------------------------------------
--------------------------------------------------------------------------------
----S----------------------------------------------------S----------------S-----
-----S------------S-S-------------------------S---------------------------------
-------------------------------------S------------SSS-S-------------S-----------
------S--------SSSS---S----------------------------S-S--S---------SS-SSS-SS-----
---------------SSSSSSSSSS-S-S--SSS-SS-SSSSSSSSSSSS--------------S-S----S----S---
---S-------SSS--------------------S-------S-------------S-SS-SS-----------------
S-S----SS----S------------------------------------------------------------------
---------------S-----------------------------------------------S----------------
-----S------------------SSSSSSSS--------------------------------S--------------S
-----------S--S----S------------S----------S-----S------------------------------
----------------------------------------------------------S-----------S---------
---------S-------------------S------------------------------------SSSSSS---S----
----------------------------------------S-----------------S-----------S---------
-----S------------------------------------------------------------------S-------
--------------------------------------------------------------------------------
-------------------------------------S------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------SS--------------------------------------------------------
--------------------SSS--S--------------S----------------S------------S---------
-----S-S----SSSSSSS-------------S-----S--------------------------------S-SS-S---
--------S-S-S----------------S---------------------S---------S---S--------------
-----------------------S-------------------------------------------SS-----S-----
-----SS----S-------------------------S---------------------S--------------------
------S---------S------------------------------------------------------------SS-
---S-SS--S------------------------------S----------S-------S-----S-----------S--
---SS-----SSS--S----------------------------------------------------------------
-------------------------------------------------S-----S-------S----------------
-------S------------------------------------------------------------------------
--------------------------------------------------S---------------S-------------
---------------------------------------------------------S---------------S------
S-------------------------------------------------------------------------------
---------------------------------------------------S----------------------------
--------S----------------------------------------------S----------------------
>forward_866
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------GTTTGAGACACCCGGCTGTA--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
>reverse_2786
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------CAGTCTGGACTTGAT
CGGCA---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
