>input_sequence_54436
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-------------------------------------------------ATGGCGGAGCACGACCTGACGGCGAGCGTGG
CGGCGTGGATGGACCCCCACCTGGTGCTCCCGGTGCTGGAGTTCCTCCAGGAGCGCGGGGTCTACGCCGACGAGGAGATC
CTGCGGGGCAAGATCCGCCTCCTCGGCGGCACCAACATGGTCGACTACGCCATGGACATCCACAAGTCGCTCCACGGCAC
CGACGACGTCCCCGCCGACATGGTCGCCCGCCGCTCCGAGGTCGTCGAGAGGCTCCGGGCCCTCCAGGAGGCCGTCGCGC
CCATAGTCGCCTTCCTCTCCAGCCCGCAGCTCGTGCAGGAGCTCCACGCCGACAAGCAGTACAACCTCCACATGCTCCAG
GAGCGCCACCAGATCGGCCCGGACCAGATCGAGGCCCTCTACCAGTACGCCAAGTTCCAGTACGAGTGCGGGATGTACTC
CGACGCCGCCGATTTCCTGTCCCAGTACCGCGCTCTGTGCACCAACAGCGAGAGGAGCCTGAGTGCCCTGTGGGGGAAGC
TGGCGGCGGAGATACTGATGCAGAACTGGGATGTCGCGCAGGAGGAGCTCAACAGGCTCAAGGAGATGATTGATTCCAGC
AGCTTCACCTCGTCGCCTGTGAACCAGCTCCACAGCAGGATATGGCTGATGCACTGGAGCCTCTTCATCTTCTTCAACCA
TGAGAATGGAAGGAACGGGATCATCGACCTCTTCTTCCAGGACAGGTACCTCAATGCTATCCAGACCAACGCTCCCCATC
TTCTGAGGTACCTTGCTGCTGCAGTTGTTGTCAACAAGAGGAGAAGGAACATGCTTAAGGAACTCATCAAGGTCATCCAG
CAGGAGCAGAACAGCTACAAGGATCCCATCATTGAGTTCCTGGAGTGCCTGTATGTCAAGTATGATTTTGATGGCGCTCA
GCAGAAGCTCGTCGAGTGCGAGCAGGTTATACTGAATGATCCTTTCCTGGGCAAGCGCGTTGAAGAGAGGAATGGCATCG
CTGTTCCTCTGAGAGACGAGTTCCTTGAAAATGCTCGCCTGTTCATTTTTGAGACTTACTGCCGTATACATCGCTGCATC
GATATTGGTGTGCTTGCGGAGAAGCTGAACATGACCTATGATGAAGCCGAGTTGTGGATAATGAACATGGTCAAGAGTTC
CAAGCTAGATGCCAAGATTGATTCAGTGACGGGAACTCTCATCATGACGACCAATCGTGTTGATGTCCATGAGCAGATTA
TTGAGAGCATGAAGAACCTCAATGCCAGGACCTACATGCTAGCAAAGAGCGTCGTGGATCCAGGGCATGCAGCAGCACAG
CAGGCTGCTCGGTGA-----------------------------------------------------------------
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>chr5D_1_TraesCS5D01G269200
CAATTCTGTCTACCTTTTCAAAATAGACGGACTTTTTTCAATGTTGTGTTTTTTTAAATCGATGAACTTTTTTTAAAATC
CATGAACTTTTTTGTAACTGACAACCTTTTTTTGTGTTTTTTCCGCTAAAGTGAATAGTTGACCGATGAATTAGTCGACC
ACGACAAAATGCAATCGGGAGACCAACGAAAACGGTTGAATGCGATCGAGTGTCGCATTCTTCTTGGGCTGGCCTATGAG
CGGGGCCACGTGAGCGCTAGGGAATGGTTCAGGCGCTTAAGGCGCCGAATTATTTTATAGCAAAACTTACGGGGAAAGTA
TCGGGTGCTCCCAGCCTTATGGTGCTCCCTGTGCTCCGATGTAAAAAACACACTTTTAAATGTTTCAAAAGATTTTAGAA
AAATATATGAATGTTTGCAAGGAATGTGACTACATCCTCTAAAAGTTTCCGGTCCAAATTTGGAATGCACATTGAGGAAC
AAAAAGGTGAAATCTAGCATGAATAGTTTAAAAAAGACAAAACCAACATTTGACACTATTTACATTTGGATTTGTCTTTT
TTGTTTCTTAATGTGCAATTCGAGTTTTGACCTGAAATTTTTAGGTGTTGTATTCACATTCCTTATGAACATTCACAATT
TTTTTGAAGCATATAAAATACTTTTTTAACATTGGAGCACCGAGAGCACCATAAAGCTGGGAGCAGCCGATACTTTCCCC
AAAACTTAAGGCGCCAAACCGGGACAGCAGGACTCCGAAAAGTG---GAAAAAAGAGCTTTGGGCTTCTCTCTATGTAAT
CGGCCTACTAAGAGCGGCAATAGGCCCGGCCCAAACAGCGGGAGGGAACTAGGGTCACGTCTTGCTTTCTT--TTTCCAA
CTTATAGCAAGAATCGCATACCTCTCCCGTGCCAGCCAGTCTCCCCCCTCCCTCCCTCCACCC----GCCGCCGCCGCCA
CCCACAAACCCTAGAAACCCTAGCTCTCATCCCCTCGCCCGAGACAGCCATGGCGGAGCACGACCTGACGGCGAGCGTGG
CGGCGTGGATGGACCCCCACCTGGTGCTCCCGGTGCTGGAGTTCCTCCAGGAGCGCGGGGTCTACGCCGACGAGGAGATC
CTGCGGGGCAAGATCCGCCTCCTCGGCGGCACCAACATGGTCGACTACGCCATGGACATCCACAAGTCGCTCCACGGCAC
CGACGACGTCCCCGCCGACATGGTCGCCCGCCGCTCCGAGGTCGTCGAGAGGCTCCGGGCCCTCCAGGAGGCCGTCGCGC
CCATAGTCGCCTTCCTCTCCAGCCCGCAGCTCGTGCAGGAGCTCCACGCCGACAAGCAGTACAACCTCCACATGCTCCAG
GAGCGCCACCAGATCGGCCCGGACCAGATCGAGGCCCTCTACCAGTACGCCAAGTTCCAGTACGAGTGCGGGATGTACTC
CGACGCCGCCGATTTCCTGTCCCAGTACCGCGCTCTGTGCACCAACAGCGAGAGGAGCCTGAGTGCCCTGTGGGGGAAGC
TGGCGGCGGAGATACTGATGCAGAACTGGGATGTCGCGCAGGAGGAGCTCAACAGGCTCAAGGAGATGATTGATTCCAGC
AGCTTCACCTCGTCGCCTGTGAACCAGCTCCACAGCAGGATATGGCTGATGCACTGGAGCCTCTTCATCTTCTTCAACCA
TGAGAATGGAAGGAACGGGATCATCGACCTCTTCTTCCAGGACAGGTACCTCAATGCTATCCAGACCAACGCTCCCCATC
TTCTGAGGTACCTTGCTGCTGCAGTTGTTGTCAACAAGAGGAGAAGGAACATGCTTAAGGAACTCATCAAGGTCATCCAG
CAGGAGCAGAACAGCTACAAGGATCCCATCATTGAGTTCCTGGAGTGCCTGTATGTCAAGTATGATTTTGATGGCGCTCA
GCAGAAGCTCGTCGAGTGCGAGCAGGTTATACTGAATGATCCTTTCCTGGGCAAGCGCGTTGAAGAGAGGAATGGCATCG
CTGTTCCTCTGAGAGACGAGTTCCTTGAAAATGCTCGCCTGTTCATTTTTGAGACTTACTGCCGTATACATCGCTGCATC
GATATTGGTGTGCTTGCGGAGAAGCTGAACATGACCTATGATGAAGCCGAGTTGTGGATAATGAACATGGTCAAGAGTTC
CAAGCTAGATGCCAAGATTGATTCAGTGACGGGAACTCTCATCATGACGACCAATCGTGTTGATGTCCATGAGCAGATTA
TTGAGAGCATGAAGAACCTCAATGCCAGGACCTACATGCTAGCAAAGAGCGTCGTGGATCCAGGGCATGCAGCAGCACAG
CAGGCTGCTCGGTGAGACCAACAGATGATCTGCAGCTTTGAGGCGGTAAAAATTACTTTGGGAACTTTGTTGTTAGGCAG
TGACTTCGTTGCTAGTATTTGAATCATATTGCTACAGCTTATGCTGATGTTTTAAATGCTTTGTACTCCTTTTACTCAAG
TTTATCGTCCTATGAATT-AATACTGCAAAAGACGTTTAACGCATTTCCTTGCTGAGGTGTCATTGCATATTTTACTGTC
TTTCTCGGCCTGTCTGCAATTGTCTTTGAGCTCCCTGTTGTCTGTCTAGCTTAGCTTCCTGTTAAACATTTTTGTGGTTT
ACAGTTAAGTCCGTAACTGTCC--TAAGGCTGTAGCATGTGTGTATGTGTGATGGCTCATCTTCCTCCACAGCTTCTCTC
GATTTGAAGCAAACAACTAGGAGAGCATATATTCTACGCCCTCCATCCCATGATATAAGACATTTTTGC-----------
---GGAGGGAGTAGTTATTACAAATAACTA----CTGGAATGCATAACAATTACAAGGCACATAGACCGTATCACAATAA
ATCATGGTGGAGTCAAATTTTGATTACTGTTTGGAGGCATTCATAACATGCATGGATCCTGTTATTTGATGGACCCAAGT
TTGCACTGAAATTGGGTCCGAGTTTTGCTCAAAGCTATGTAAATGTCCTATAAGGCTGTAGTGTGTATGTGTGGTGGGTC
ATCTTCCTCCACAGCTTCTCTCGATTTGAAGCAAACAACTAGGAGAGCATATATTCTAGTTATAGTTATTACAGATTGCT
ACTAAAATGCATAGCAATTACAAGGCACATAGACCGACTCCAGCTGCACAATGAATCATGGTGGAGTCAAATTCTGATTA
GTGTTTGGAGGTAGAAATAACATGCATGAATCCTGTTCTTTGATGGACCCAAGTTTGCGCTGAAATCGGGTCTAGAGTTT
TGTTCAAAGCTATGTATTTGTGTCCTGAG-GCT-GTAGTGTTGTATGTGTGTACTGAGTTGGTGTAGCATAGGGCCTA
>chr5B_729
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--------AGGCACCGAACCGGGACAACT-GTCTCTGAAGGTGG---AAAAAAATAGCTTCGGGCTCT---CTGTGTAAT
CGGCCCACTAAGATCGGCAATTGGCCCGGCCCATACGGTGGGAGGGAACTAGGTCCACGTCTTGCTTTCTT--T--CCGA
CTTATAGCAAGAATCGCATACCTCTCCCGTGCCAGCCAGTCTCCCCT-TCCCTCCCT---CCCTCCACCCGCCGCCGCCA
CCCACAAACCCTAGAAACCCTAGCAT----CCCGTCGCCCGAGACAGCCATGGCGGAGCACGACCTGACGGCGAGCGTGG
CGGCGTGGATGGACCCCCACCTGGTGCTCCCCGTGCTGGAGTTCCTCCAGGAGCGCGGGGTCTACGCCGACGAGGAGATC
CTGCGTGGCAAGATCCGCCTCCTCGGCGGTACCAACATGGTCGACTACGCCATGGACATCCACAAGTCGCTCCACGGCAC
CGACGACGTCCCCGCCGACATGGTCGCCCGGCGCTCCGAGGTCGTCGAGAGGCTCCGGGCCCTCCAGGAGGCCGTCGCGC
CCATCGTCGCCTTCCTCTCCAGCCCGCAGCTCGTGCAGGAGCTCCACGCCGACAAGCAGTACAACCTCCACATGCTCCAG
GAGCGCCACCAGATCGGCCCGGACCAGATCGAGGCCCTCTACCAGTACGCCAAGTTCCAGTACGAGTGCGGGATGTACTC
GGACGCCGCCGATTTCCTGTCCCAGTACCGCGCTCTGTGCACCAACAGCGAGAGGAGCCTCAGCGCCCTGTGGGGGAAGC
TGGCGGCGGAGATACTGATGCAGAACTGGGATGTCGCGCAGGAGGAGCTCAACAGGCTCAAGGAGATGATTGATTCCAGC
AGCTTCACCTCGTCGCCTGTCAACCAGCTCCACAGCAGGATATGGCTGATGCACTGGAGCCTCTTCATCTTCTTCAACCA
TGAGAATGGAAGGAACGGGATCATCGACCTCTTCTTCCAGGACAGGTACCTCAATGCTATCCAGACCAACGCTCCCCATC
TTCTGAGGTACCTTGCTGCTGCAGTTGTTGTCAACAAGAGGAGAAGGAACATGCTTAAGGAACTCATCAAGGTCATCCAG
CAGGAGCAGAACAGCTACAAGGATCCCATCATTGAGTTCCTGGAGTGCCTGTATGTCAAGTATGATTTTGATGGCGCTCA
GCAGAAGCTCGTCGAGTGCGAGCAGGTTATACTGAATGATCCTTTCCTGGGGAAGCGCGTCGAAGAGAGGAATGGCATTG
CTGTTCCTCTGAGAGACGAGTTCCTTGAGAATGCTCGCTTGTTCATCTTTGAGACCTACTGCCGTATACATCGCTGCATC
GATATTGGTGTGCTTGCGGAGAAGCTGAACATGACCTATGATGAAGCCGAGTTGTGGATAATGAACATGGTCAAGAGTTC
CAAGCTAGATGCCAAGATTGATTCAGTGACGGGGACTCTCATCATGACAACCAATCGTGTTGATGTCCATGAGCAGATTA
TTGAGAGCATGAAGAACCTCAACGCCAGGACCTACATGCTGGCAAAGAGTGTCGTGGATCCAGGGCATGCAGCAGCACAG
CAGGCTGCTCGGTGAGACCAACAGATGATCTGCAGCTTTGAGGCGGTAAAAATTACTTTGGGAACTTCGTTGTTAGGCAG
TGACTTCGTTGCTAGTATTTGAATCACATTGCTACAGCTTATGCTGATGTTTTAAATGCTTTGTACTCCTTTTACTCAAG
TTTATCGTCCTATGAATTTAATACTGCAAAAGACGTTTAACGCATTTCCTTGCTGTGGTGTCATTGCATATTTAACTGTC
TGTCTCGGCTTGTCTGCAA-TGTCTTTGAGCTCCCTGTTGTCTTTCTAGCTTAGCTTCCTGTTAAACGTTTTTATGGTTT
GCAGTTAAGTCTGTAAGTGTCCTATAAGGCTGTAGCGTCTGGGTATGTGTGATGGGTCATGTTCCTCTAGATTTGA----
------AAGCACATAACTAGGAGAGCATATATTCTAGTTATTAG------------------------------------
-------------------------AAATAACTACTGGAATGCAT-----------------------------------
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----------AGC--------------CATAGACCGTCTCCAGCTGCACAATGAATCATGGTGGAGTCAAATTCTGATTA
ATGTTTGGAGGCATTCATGTTATGGATGGATCCTGTTCTTTGATGGACCCAAAGTT----TGAAATCGGGTCT-GAGTTT
TGCTCACAGCTATGTATGTGTGTCCTGATCGCT-GTAGTGTTGTATGTGTGTCCTGAGTCGGCGTGGCATAGGGC---
>chr5A_743
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----------------------GACAGCAGGTCTCCGAAAAGGGAAAAAAAAAAGAGCTTCGGGCTTCTCCCTTTGTAAT
CGGCCCGCTAAAAGCGGCAATAGGCCTGGCCCATACGGTGGGAGGGACCTAGGTCCACGTCTTGCTTTCTTTTT--CCAA
CTTATAGCAAGAATCGCATACCTCTCCCGTGCCAGGCAGTCTCCCCT-TCCCTCCCT---CCC----CCCGCCGCCGCCA
CCCACAAACCCTAGAAACCCTAGCAC----CCCCTCGCCCGCGGCAGCCATGGCGGAGCACGACCTGACGGCGAGCGTGG
CGGCGTGGATGGACCCCCACCTGGTGCTCCCGGTGCTGGAGTTCCTCCAGGAGCGCGGGGTGTACGCCGACGAGGAGATC
CTGCGGGGCAAGATCCGCCTCCTCGGCGGCACCAACATGGTCGACTACGCCATGGACATCCACAAGTCGCTCCACGGCAC
CGACGACGTCCCCGCCGACATGGTCGCCCGCCGCTCCGAGGTCGTCGAGAGGCTCCGGGCCCTCCAGGAGGCCGTCGCGC
CCATCGTCGCCTTCCTCTCCAGCCCGCAGCTCGTGCAGGAGCTCCACGCCGACAAGCAGTACAACCTCCACATGCTCCAG
GAGCGCCACCAGATCGGCCCGGACCAGATCGAGGCACTCTACCAGTACGCCAAGTTCCAGTACGAGTGCGGGATGTACTC
GGACGCCGCCGATTTCCTGTCCCAGTACCGCGCTCTGTGCACCAACAGCGAGAGGAGCCTGAGCGCCCTGTGGGGGAAGC
TGGCGGCCGAGATACTGATGCAGAACTGGGATGTCGCGCAGGAGGAGCTCAACAGGCTCAAGGAGATGATTGATTCCAGC
AGCTTCACCTCGTCGCCTGTCAACCAGCTCCACAGCAGGATATGGCTCATGCACTGGAGCCTCTTCATCTTCTTCAACCA
TGAGAATGGAAGGAACGGGATCATCGACCTCTTCTTCCAGGACAGGTACCTCAATGCTATCCAGACCAACGCTCCCCATC
TTCTGAGGTACCTTGCTGCTGCAGTTGTTGTGAACAAGAGGAGAAGGAACATGCTTAAGGAACTCATCAAGGTCATCCAG
CAGGAGCAGAACAGCTACAAGGATCCCATCATTGAATTCCTGGAGTGCCTGTATGTCAAGTATGATTTTGATGGCGCTCA
GCAGAAGCTTGTCGAGTGCGAGCAGGTTATACTGAATGATCCTTTCCTGGGAAAGCGCGTCGAAGAGAGGAATGGCATTG
CTGTTCCTCTGAGAGACGAGTTCCTTGAGAATGCTCGCCTGTTCATCTTTGAGACCTACTGCCGTATACATCGCTGCATA
GATATTGGTGTGCTTGCGGAGAAGCTGAACATGACCTATGATGAAGCCGAGTTGTGGATAATGAACATGGTCAAGAGTTC
CAAGCTAGATGCCAAGATTGATTCTGTGACGGGAACTCTCATCATGACGACCAATTGTGTTGATGTCCATGAGCAGATTA
TTGAGAGCATGAAGAACCTCAATGCCAGGACCTACATGCTGGCAAAGAGTGTTGTGGATCCAGGGCATGCAGCAGCACAG
CAGGCTGCTCGGTGAGACCAACAGATGATCTGCAGCTTTGAGGCGGTAAAAATCACTTTGGGAACTTCGTTGTTAGGCAG
TGACTTTGTTGCTAGTATTTGAATCACATTGCTACAGCTTATGCTGATGTTTTGAATGCTTTGTACTCCTTTTCCTCAAG
TTTATCGTCCTATGAA-TTAATACTGCAAAAGACGTTTAACGCATTTCCTTGCTGTGGTGTCATTGCATGTTTTACTGTC
TGTCTTGGCTTGTCTGCAATCATCTTTGAGCTCTCTGTTGTCTGCCTAG--------CCTGTTAAACATTTTTAAGGTTT
ACAGTTAAGTCCGTAAGTGTCCTATAAGGCTGTAGCGTGTGTGTATGTGTGATGGGTCATCTTCCTGCACAGTTTCTCTT
GATTTGAAGCAAACAACTAGGAGAGCATATATTCTACTCCATAGTTTGTAGTGGAATCTCTAAAGAGACTTATATTTAGG
AATGGAGGGAGTAGTTATTACAAATAACTAACTACTGGAATGCAT-----------------------------------
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----------ATAGCAATTACAAGGCACATAGACGTGCTCCAGCTGCACAATGCATCATGGTGGAGTCAAATTCTGTTTA
GTGTTTGGAGGCATTCATAATATGCATGGATCCTGTTTTTTGATGGAACCAAGTTTGCGCTGAAATCGGGACC-GAGTTT
TGCTCAAAGCTATGTATGTGTGTCCTGAG-GCTTGTAGCGCTGTATGTGTG---------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS----S--S---------------S----------S----S------------S---------S--S------
-----S---------------------------S--S-S--------------SS-------------------SS----
----------------------------------------------SS---------SSS-------S------------
------------------------S-SSSS--------------------------------------------------
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----S---------------------------------------------------------------------------
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S--------------------------------------------------------------S----------------
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--------------------S-----------------------------------------------------------
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---------------------------------------------------S--------S-----------------S-
----------------------------S-----------------S--------S------------------------
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----------------------------------------S--------S------------------------------
-------------------------------------------------------------------S------------
--------------------------S-----------------------------------------------------
-------------------------------------------------------S------------------------
-S-------S---------------------------------------------------------------S------
----------------S-------------------S------------------S----------------S------S
-------------------------------------S--S-SSS-SSS-SSSS-SSSSSS-SSSSSS------------
---------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS--------------------------S-------------------------------------------
-----------S-SSS----S-------S--------------------------------------------S------
--S--------------S----------------------------------S------S--S--S---------SSS
>forward_768
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----------------------------AGCAGGACTCCGAAAAGTGG--------------------------------
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>reverse_2562
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-TTCTCGGCCTGTCTGCAATT-----------------------------------------------------------
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