>input_sequence_54427
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------------------------------------------------------------------------------AT
GTCGGAGAGGAAGCGCCGGGCTGGGGCAGATGCGGCCGCGGGGGGCTCGACCTCGAAGAAACCGCGCGGCGCCTCGGCCG
CCGCATCCTACGCCCAATCCCTCCGCTCGAAGCTCCGCCCGGACGCCTCCATCCTCGCCTCCCTCCGCGCCCTCGCCTCC
GCCGCCTCCAAATCCAAGCCCGCGGCCGCGTCCTCAGCCGGAGCGAAAGCCCTCTCCGAGGACGACCCGACCTCCGCCTC
CTCCAACTACATCGTGGTCGCCGACCAGGACACCACCTCCGTCACCTCCCGCATCAACCGCCTCGTCCTCTCCGTCGCGC
GGAGCATCCTGGCTGGCCGCGGCTTCTCCTTCGCCGTCCCCTCCCGCGCCTCCTCGAACCAGGTATACCTCCCGGACCTC
GACCGCATCGTGCTCCTCCGCCGCGAGTCCGCGAGGCCCTTCGCCAACGTCGCCACCGCGCGCAAGGCCACCGTCACCGC
GCGCGTCCTCTCCCTCGTCCACGCCGTCCTGCGCAGGGGCATCCACGTCACCAAGAGGGATCTCTTCTACACCGACGTGA
AGCTCTTCGGCGACCAGTCCCAGTCGGATGCCATCCTCGACGACGTCTCCTGCATGCTTGGGTGCACCCGCTCGTCGCTC
CATGTCGTCGCCTCTGAGAAGGGCGTTGTGGTTGGCCGCCTCATTTTTGCTGATGACGGCGACGTCATCGACTGCACGCG
AATGGGCGTCGGCGGTAAGGCCATCCCGCCCAACATCGACAGGGTGTCAGGCATCGAGAGCGACGCTCTGTTCATCTTGC
TTGTGGAGAAAGATGCCGCTTTCATGCGCCTCGCCGAGGACCGGTTCTACAACCGTTTTCCATGCATCATATTGACAGCA
AAGGGGCAGCCGGATGTTGCCACCAGGTTGTTCTTGCGCCGGCTTAAGGTAGAGCTGAAGCTGCCCGTTCTCGCATTGGT
GGACTCTGATCCATATGGGCTGAAGATCTTGTCAGTGTACATGTGTGGCTCCAAGAACATGTCGTATGACAGTGCCAATC
TTACAACGCCGGATATCAAGTGGCTCGGCGTGCGGCCAAGTGATCTGGACAAGTACAGGGTACCGGAGCAGTGCCGGCTT
CCCATGACTGATCACGATATCAAGGTAGGAAAAGAGATGCTAGAGGAAGACTTCGTGAAGCAAAATGAAGGGTGGGTGAA
GGAGTTGGAGACGATGTTGCGAACAAAACAAAAGGCTGAGATTCAGGCTCTCAGCTCCTTTGGGTTCCAGTACCTGACTG
AGGTATATCTACCCCTCAAGCTGCAGCAGGAGGACTGGATTTGA------------------------------------
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>chr4D_1_TraesCS4D01G199200
AATGAAACATTGTACACTAGTCTATCAATTGAATCTAGTTTCAAGATATCAATGCGAAAACCTCAACGGTGAAAA--TAG
TTCATAATTTGGATGCCTAGCAAAACATATTTCGATTTAAAATTTAGATCGCACAAAAATAAGATGTACAGTGA------
-----------------AAATGAAACTCTATAATATTGACAGATGGGGCACACACGGTATTTGATGCAAAAGGTACGCTC
AAGGCATCTCCAAGAGCGCCCCTAAATCCTCCCTATTTGTCCAAACGGATAGGACAGGTTTTTTTTTCCTAACTCCCCCA
ATATATGAATTTTATTAGGGAAAGGGAGGCTGTTGAAGATGCTGTAACAAGAAT-AAAATAGGGGTCTGTCATC---TAA
TAATTCAAAACGATGCTTAGGTTCATCTACAACAGATGAACAGTAAATTTGGAATAATAATAATATAATCTCTT---TTA
GGCATCCAAGATGCTCATGTCCATGTAAATTTTGA--GTGTTTGCACATCCGAGGAGCTCATAAAAAAACAAAATCGGCT
CTCGGCTCTGAATAGTGTTCCTTTCAGATGTCCAAATATCACAAGCTCC--------------------------TCGGA
TGTCCAAATACCACAAAAAATTGCACGAATCTTGCGT-----ATATGAACATTTTGGATGCCTAAAATTTTCAGATTCTT
TGATATCTTTTACTATTTTTTTGAATTTATTGT---CGCCGGGTGTAGATGGACAGCGAGTA------------------
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--------------------------AAAAAACTTCACGGAGACATCTTTTTTTTTTTTTTAACCTTCACGGAGACATCT
GGCGCACAAGA------AAAAAAGACGTCAGCGAGACGTGTTGCTGGGCCGAGCTTCTACGGGCTTCGTGGGCCGCGCGC
TTGGCGCATAGGGTAGGTGCGGAGTGCGGACCGTCTCCGTCCCTCCCATGCTCCCCAACCAAAGCCACAGCCACACTCCA
GTTCGAATCCTGCCGCCGTCTCCGCCGTAGTGTCCCCCACCCCTCGTCCCCGGTGATTCCGCCTTCAGATCTCTCCACAT
GTCGGAGAGGAAGCGCCGGGCTGGGGCAGATGCGGCCGCGGGGGGCTCGACCTCGAAGAAACCGCGCGGCGCCTCGGCCG
CCGCATCCTACGCCCAATCCCTCCGCTCGAAGCTCCGCCCGGACGCCTCCATCCTCGCCTCCCTCCGCGCCCTCGCCTCC
GCCGCCTCCAAATCCAAGCCCGCGGCCGCGTCCTCAGCCGGAGCGAAAGCCCTCTCCGAGGACGACCCGACCTCCGCCTC
CTCCAACTACATCGTGGTCGCCGACCAGGACACCACCTCCGTCACCTCCCGCATCAACCGCCTCGTCCTCTCCGTCGCGC
GGAGCATCCTGGCTGGCCGCGGCTTCTCCTTCGCCGTCCCCTCCCGCGCCTCCTCGAACCAGGTATACCTCCCGGACCTC
GACCGCATCGTGCTCCTCCGCCGCGAGTCCGCGAGGCCCTTCGCCAACGTCGCCACCGCGCGCAAGGCCACCGTCACCGC
GCGCGTCCTCTCCCTCGTCCACGCCGTCCTGCGCAGGGGCATCCACGTCACCAAGAGGGATCTCTTCTACACCGACGTGA
AGCTCTTCGGCGACCAGTCCCAGTCGGATGCCATCCTCGACGACGTCTCCTGCATGCTTGGGTGCACCCGCTCGTCGCTC
CATGTCGTCGCCTCTGAGAAGGGCGTTGTGGTTGGCCGCCTCATTTTTGCTGATGACGGCGACGTCATCGACTGCACGCG
AATGGGCGTCGGCGGTAAGGCCATCCCGCCCAACATCGACAGGGTGTCAGGCATCGAGAGCGACGCTCTGTTCATCTTGC
TTGTGGAGAAAGATGCCGCTTTCATGCGCCTCGCCGAGGACCGGTTCTACAACCGTTTTCCATGCATCATATTGACAGCA
AAGGGGCAGCCGGATGTTGCCACCAGGTTGTTCTTGCGCCGGCTTAAGGTAGAGCTGAAGCTGCCCGTTCTCGCATTGGT
GGACTCTGATCCATATGGGCTGAAGATCTTGTCAGTGTACATGTGTGGCTCCAAGAACATGTCGTATGACAGTGCCAATC
TTACAACGCCGGATATCAAGTGGCTCGGCGTGCGGCCAAGTGATCTGGACAAGTACAGGGTACCGGAGCAGTGCCGGCTT
CCCATGACTGATCACGATATCAAGGTAGGAAAAGAGATGCTAGAGGAAGACTTCGTGAAGCAAAATGAAGGGTGGGTGAA
GGAGTTGGAGACGATGTTGCGAACAAAACAAAAGGCTGAGATTCAGGCTCTCAGCTCCTTTGGGTTCCAGTACCTGACTG
AGGTATATCTACCCCTCAAGCTGCAGCAGGAGGACTGGATTTGAGATCTCTTCTGATGGCAGGTGAATAGATGGTCGCGT
TGCTCTTTATCTTTGTGTTCATGTTAAGTTTGGTTGATTTCATTAGTGATCCAATACATTCTCATCTTCTTGATGCATTT
TACCAAGGACATAAGCCTTATGCAAGTT-AGTAGAAAAATGTTATGATCTGTGACTGAGAATTAC---------------
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------GTAGTATTCAGTGTACCTTGGCATTACATAAGGGCATCCTTCCTCATGACTAGTCGACTGAC-AAAGCGTAGAA
TATTCAATCAGGATGCACGAGTTAACCAATATTGCTACTAAACCTGGTATCATGTTTCCAGCTGCAGATGATACAGAGAA
AGAGCAGCTTGATCTAGGAGCATCAATTTGACACCCGCGGGGGGCTAGCTTAAAAATACCTCATCTGTGCTGCATTACAT
TTGTGCGGCAGTCCCTTTGTATGATTTTATGTATTTGAAAAACCGTATGTTGTGTACTTGTGAGACCTGCATTTAGAAGT
ATCTGCATCTGTGGAATTAGATATGACTTATGTGTATTTGAAAATTTGTATGTTGCGTTTTTCTTGTACTGCTGAAGATA
GAATTTGGTGTAAGTTCTGATGCCTGTATTTAGAAGCTAGCATTCGCATCTGGAAAATGGGTTGCAAGAGATTAGAGAGC
TACTGCCATACTTTAGTTTTTTTTGGT---GGGGATACTTATGTTTATCTGTA---------------------------
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--------------------------------------TATCTTGTTAAAACAAAATGTAGTTCGTTTCAATATTTATCT
TTGGTTGAA-----------------------------------------------------------------------
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--------------------------------------------------------ATGATTTTCGTAGATTGTTTGGAG
GATTAGAATCTTTAGAAATTATTTCCCGATTAGTTGTTCTGATTCTTCAGAAATTATTTGTGGATTGGTTAGGATTGGAA
CCTATAGGAACTTTTCCTAAGGATTCCACTGTACTACATCTCATATCAAAGTTA-GCATCCACTCAAACCTCTTGAAACG
AACCCTTTGTTTCCCAATCAAACAAACCAAAATAATGCAAGGTTGGAATAGGCATGACATTCA
>chr4B_3
--TGAAACATTGTACACTGGTCTATCAACTGGATCTAGTTTCAAGATATCAATGTGAGAAACGCAATGATGAAAAAATAA
TTTATAATTTGGATGCTTGGCAAAACATATTTCAATTGGAAATTTGGATCTCACAAAAATAAAGATGTACAGAGCGCCAT
CCCGTTCTGGTCCAGTGAAAAAAATCTCTATGATAGTGACAGGTGACGCACACATGGTATTTGATGCAAAAGATGCGCTC
AAGGCATCTCCAAGAGCGCCCCTAAATCCTTCATGTTTGTCTAAACGGGTAGGACAG--TTTTTTTTCCCAACTCCCCCA
ACATATGA-TTTTATTAGGGAAAGGGAAGCTGTTGGTGATACTCTAACGAGGATAAAAATAGGGGTCTATCCTGTGATAC
TAATTCAAAACTATGCTCAGGTTCATCTACAATAGATGAACAGTAATTTTGGAAAAATAGTAAAAAAGAAAAAGAAATTA
GGCATCCAAGATGCTCATGTCTGTGTAAATTTTTGTGGTGTTTGCACATTTGAGGAGCTCGTAAAAAAA-----------
-TCAGCTCTGAATAGTGTTCTTTTTCAAAGTTTCTCACACACTTGAAATTTGTTTTTTTTTTTGACACGAGCTCTTCAGA
TGTCCAAATACCACAAAAATTTGCACAAATCTTACATATATAATATGAGCATTCTGGATGCCTAAAAAGTTCAGATTCTT
TGATATCTTTTACTTTTTTT---AATTTATTAATCACGCCGGGTGTAGATGGACAATAAATTAAAAAAGAAGGACGCTGA
TAACGCACACACGTATAGTGGGAGCAACACCCGCCCACACACCTTACAACATATAAACTGCGCCGTGTCACCGCATGCAT
GCATGTGAGAATCTTTTTGAATTTTTAGTTTTTAAAATGTTTTATCTCTTAAATGAAAAACTCGATTGAAGATCCGTTTT
CACCATTAAATCCATCGCGACGAAATCTTCAAAACTAGATCTCATATCAATATGTCTCGACGGCATTTTTTTAGGGGTTA
AAAGTTGTCATGTCTATTGCACATGAATTGCCATGATGTTTACACTGAAGTTGCCATGATATGTTTCAGCTATTTTTTCT
TCTACCTTTAAAAGTAAATTTTGACATATTATAAAACAAGAATTAAGAAACTAGACTTGCCATGAACCATAAACTAAAAT
TGCCATGATACATGCACTTAAAGTTGCCATGATTCATACAAAAAATAATTTTCATGGTCAAAGTACTGGGATTGTCATGG
TCAAAATACTAAAATTATCATGATCTATTAAACTAAAATTGCCACATGGCAATTTTAGTGTAAACACTATGACAACAACA
GTGTAAACATCATGGCAACTTTTGGCCATTTTTTTTGGTCGAAACATATCAACATGGGATCTGATTTTGAAGATCTCGTC
AAGACGGATTTAATGGTGAAAACTGTTTTTTAATTGAATTTTTAATTAGGAGATAAAACATCTTTAAGCCGAAAACTAAA
AAGATTCCCGCTGATGTCATCTGTTTTGACGTGGCAAAATGAATGGTAATGGGGACGTTTGGACCATGTTGCTTCGTGTC
ACACGTGTGGACATTATCATTTGAGGAAAAAAAATCACAGAGGCATT------TTTTTTAGAACCTTCACGGAGACATCT
GGCGCACAAGA------AAAAAAAACGTCAGCGAGACGTTGCTGGGCCAAGTTAG--TACGGGCTTCGTGGGCCGCGCGC
TTGGCGCATAGGGCAGAGTGCGGAC-----CCGTCTCCGTCCCTCCCATTCTCCCCAACCAAAACCACAGCCACACTACA
GTTCGAATCCCGCCGCCGTCTCCGCCGTAGTGCCCCCCACCCCTCCTCCCCGGTGATTCCGCCTCCAGATCTCTCCACAT
GTCGGAGAGGAAGCGCCGGGCGGGGGCAGATGCGGCCGCGGGGGGTTCGACCTCGAAGAAACCGCGCGGCGCCTCGGCTG
CCGCATCCTACGCCCAATCCCTCCGCTCGAAGCTCCGCCCGGACGCCTCCATCCTCGCCTCCCTCCGCGCCCTCGCCTCC
GCCGCCTCCAAATCCAAGCCCGCGGCCGCGTCCTCAGCCGGAGCGAAAGCCCTCTCCGAGGACGACCCGGCCTCCGCCTC
CTCCAACTACATCGTGGTCGCCGACCAGGACACCACCTCCGTCACCTCCCGCATCAACCGCCTCGTCCTCTCCGTCGCGC
GAAGCATCCTGGCTGGCCGCGGCTTCTCCTTCGCCGTCCCCTCCCGCGCCTCCTCAAACCAGGTATACCTCCCGGATCTC
GACCGCATCGTGCTCCTCCGCCGCGAGTCCGCGAGGCCCTTCGCCAACGTCGCCACCGCGCGCAAGGCCACCGTCACCGC
GCGCGTCCTCTCCCTTGTCCACGCCGTCCTGCGCAGGGGCATCCACGTCACCAAGAGGGATCTCTTCTACACCGACGTGA
AGCTCTTCGGCGACCAGTCCCAGTCGGACGCCATCCTCGATGACGTCTCCTGCATGCTTGGATGCACCCGCTCGTCACTC
CATGTCGTCGCCTCTGAGAAGGGCGTTGTGGTTGGCCGCCTCATTTTTGCTGATGACGGCGACGTCATCGACTGCACGCG
AATGGGCGTCGGCGGTAAGGCCATCCCGCCCAACATTGACAGGGTGTCAGGCATTGAGAGCGACGCTCTGTTCATCTTGC
TTGTGGAGAAAGATGCTGCTTTCATGCGCCTCGCCGAGGACCGGTTCTACAACCGTTTTCCGTGCATCATATTGACAGCA
AAGGGCCAGCCGGATGTTGCCACCAGGTTGTTCTTGCGCCGGCTTAAGGTAGAGCTGAAGCTGCCGGTGCTCGCATTGGT
GGACTCTGATCCATATGGGCTCAAGATCTTGTCCGTGTATATGTGCGGCTCCAAGAACATGTCATATGACAGTGCCAATC
TTACAACGCCAGATATCAAGTGGCTCGGCGTGCGGCCAAGTGATCTGGACAAGTACAGGGTACCGGAGCAGTGCCGGCTT
CCCATGACTGATCACGATATCAAGGTAGGAAAAGAGATGCTAGAGGAAGACTTCGTGAAGCAAAATGAAGGGTGGGTGAA
GGAGTTGGAGACGATGTTGCGAACAAAACAAAAGGCTGAGATTCAGGCTCTCAGCTCCTTTGGGTTCCAGTACCTGACTG
AGGTATATCTACCCCTCAAGCTGCAGCAGGAGGACTGGATTTGAGATCTCTTCTGATGGCAGGTGAATAGATGATCGTGC
TGCTCTTTATCTTTGTCTTCATGTTAAGTTAGGTTGATTTCATTACTGATCCAATACATTCTCATCTTCTTGATGCATTT
TACCAAGGACATAAGCCTTATGCGAGTTAAGTAGAAAATTGTTATCATCTGTGGCTTAGAATTAGTATTTA---------
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-----------------TGTACCTTGGCATTGCATAAAGGCATCCTTCCTCATGACTAGTCGACTGAC-AAAGCGAAGAA
TATTCAATCAGGATGCATGAGTTAACCAGTATTGCTACTAAACCTGGTGTCATGTTTCCAGCTGCAGATGATTTAGAGAA
AGAGCAGCTTGATCGAGGAGCATCAATTTAACACCTGCGGGGGGCTAGCTTAAAAATATCTCATCTGTGCCGCGTAACAT
TTGTGTGGCAGTCCCTTTGTATGATTTTATGTATTTGAAAAACCGTATGTTGAATACTTGTGAGACCTTTATTTAGAAGT
ATCTGCATCCGTGGAATTGGATATGCCTTATGTGTATTTGAAAAAAATTATGTTGCGTTTTTCTTGTACTGCTGAAGATA
TAATTTGGTGTAACTTCTGATGCCTGTATTTAGAAGCTAGCATTCGCATCTGGAAAATCAGTTGCAAGAGATTAGAG--C
TACTGCGATACTTTATCTTTTTTCTTTTGCGGGGATACTTATGTTTATCTGTACTAGCACAAATGCCCATGCGTTGTAAC
GGGGCAATACATATTCTATTGCACAATATCAATTTTGTGTGACATATATCTTTAGGATACATATTCTATGGTCCAATATC
AACTGTGTGTACCACATATCTTTTTGACTATCACATACATCAGGTGACAATGTTGACCTTTTTTACTGTTGAACTACTGC
TTCCTCCACCCTACATATATGTCTCTTTGTGTTCGGCGTCATCTTATAACGACTCTCTTTCTGTACCGCTCGATCTTTCG
ATGACTCTCTAAAGAGGTTCATGTCAGCTGGGGTTTGCTTGTCTTGATTGATCGAACAATGGACGTTTTCCATCTAAAAA
AACGATGGGTGTTGCCTCATGTTGTAAGAAATGTTTAAATTTGCATTATTTCAATTTTCTTTTTGTTCGAGGGTGATCGG
TAAATGTGTCTATCGGGTAGCAACTCAAAAAACCGTATGAGTATTGTAGGAGTACCAATGCACATGCACAATAGCTTTAT
GAGATAGCTTAAGCCACTATTGAATAAAAAAAAAATTGGTAATCACTTTAATGGTAAAATTGCACTGACTCTTTAGAAAT
GCAAATATTCACTCATACCTGCTACAGAGTATGCAAAAGTTCATACATTAAAAAGCATACAGTAGAGCAGGGGTGGCCGA
TTGTCTCTTCAACTAAGGGAAAATTAGATAGTAAAGAAACAGATTCCCAAACTATGATTTTAGGCATGAATTTTTTTACT
GACAATCGGTTAAAAGAACATTTCATTTGATAATAGAAAATCACAGTAATTAGCCAAATCGGTAAGAGCTATTCTGATGT
TGTACTGTTTTTTCTAAAATATTGATAGTCATATTCGGCAGCAAACTTGTGTGCCTATAATTCCATGCCTTTTCATTTTA
TAAGCTTTAGGACAAAAAAAACTGTGTAGTACCATGGTCCACACCAGTATTGTTTATTTGAGGCACTACCATTGCTTTTG
AGCTATACTTTCAGCTTGCAGCTTGCTCCTCACACGCACATACGTGTATTTTTGCCTCTTTGTATGTACGCACGTGCCCC
AGCCTAAGCTCTTTTTGCATGTGTGTGTATGTGCGTAGGACATGTGTGTTCCTCGTTTTTGACGATGAAATCGAATCCAC
GCCTGACCCTCTAATTGCTGCTTGCTGATTATTTTTTGCTGCTGACCAGACCAGCATCGTTTTTGAGATAGCTTACCACT
CATGCCAAGTGGCCCATACGTGGGATAGAGCGTCCATAAGTTTATTTGTGCATGTATTAAGTAATTAACTTCGTTTTCCT
ATCACAATTGAGAGCTAGCTCAACTGGCTAGAGGTTTGGAGTTTGACTCCCGCCGTACACATGGTTTCTTTTTTCCAATT
CTAATTTGGGATTGTTTGTGTTGGCAGGCCGAGGCCCAACGTGGGCCAGCATGATGCTACACTTTGGGCCGGATGTGCCT
GGCCGAGCGAGATCGTGGTGTGGCCCAGCCTGCTGTTTGTACTGTTTCAAGAAAAAATGCTGTTCGTATGCTCTACGACG
GACGAAAATCCAATCCAGATGACGGTCGAAAAAATAGCCGACGTATACAATGCAAAAGGATCTGATGACGAAAAAGATGG
AGAAACAATCCCCCTTTAATATTAGGTAGAGGTAGAGATATCCTGTTAAAACAAAATGTAGTTCGTTTCAATATTGATCT
GTGCAAACGCATTCACAGGCCAGATCACCCAAAAGC-TTTGGCTCTTTGGTTGAAATGATTTT-----------------
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-----------------------------------------------------------------GTAGATTCTTTGGAG
GATTAGAATCTTTAGAAATTATTTCCAGATTAGTTGTTCTGTTTCTTCAGAAATTTTTTCTGGATTGGTTAGGATTGAAT
CCTATAGGAACTTTTCCTAAGGATTCCATTGTACTACATCTCATAGAAAAGTTA-GCATCCACTCAAACCTCTTGGAAAG
AACCCTTTGTTTCCCAATCAAACAAACCAAAATAATGCAAGGTTGGAGTAGGCATGACATTCA
>chr4A_676
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--------------------TTGAATTTATTGTTCAGGCCGGGGGTAGATGGACAGTGAGTA------------------
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--------------------------AAAAAACTTCACGGAGACAGTTG----TTTTTTTTAACCTTCACGGAGACATCT
GGCGGCTGGCGCACAAGAAAAAAAACGTCAGCGAGACGTGTTGCTGGGCCGAGCTACTACGGGCTTCGTGGGCCGCGCGC
TTGGCGCATAGGGTAGGTGCGGAGTGCGGACCGTCTCCGTCCCTCCCATGCTC----ACCAAAGCCTCAGCCACACTCCA
GTTCGAATCCCGCCGCCGTCTCCGCCGTAGTGCCCCCCACCCCTCCTCCCCGGTGATTCCGCCTCCAGATCTCTCCACAT
GTCGGAGAGGAAGCGCCGGGCGGGGGCAGATGCGGCCGCGGGGGGCTCGACCTCGAAGAAACCGCGCGGCGCCTCGGCCG
CCGCATCCTACGCCCAATCCCTCCGCTCGAAGCTCCGCCCGGACGCCTCCATCCTCGCCTCCCTCCGCGCCCTCGCCTCC
GCCGCCTCCAAATCCAAGCCCGCGGCCGCGTCCTCAGCCGGCGCGAAAGCCCTCTCCGAGGACGACCCGGCATCCGCCTC
CTCCAACTACATCGTGGTCGCCGACCAGGACACCACCTCCGTCACCTCCCGCATCAACCGCCTCGTCCTCTCCGTCGCGC
GGAGCATCCTGGCTGGCCGCGGCTTCTCCTTCGCCGTCCCCTCCCGCGCCTCCTCGAACCAGGTATACCTCCCGGACCTC
GACCGCATCGTGCTCCTCCGCCGCGAGTCCGCGAGGCCCTTCGCCAACGTCGCCACCGCGCGCAAGGCCACCGTCACCGC
GCGCGTCCTCTCCCTCGTCCACGCCGTCCTGCGCAGGGGCATCCACGTCACCAAGAGGGATCTCTTCTACACCGACGTGA
AGCTCTTCGGCGACCAGTCCCAGTCGGACGCCATCCTCGATGACGTCTCCTGCATGCTTGGATGCACCCGCTCGTCGCTC
CATGTCGTCGCCTCTGAGAAGGGCGTTGTGGTTGGCCGCCTCACTTTTGCTGATGACGGCGACGTCATTGACTGCACGAG
AATGGGCGTCGGCGGTAAGGCCATCCCGCCCAACATCGACAGGGTGTCAGGCATTGAGAGCGACGCTCTGTTCATCTTGC
TTGTGGAGAAAGATGCTGCTTTCATGCGCCTCGCTGAGGACCGGTTCTACAACCGTTTTCCGTGCATCATATTGACAGCA
AAGGGACAGCCGGATGTTGCCACCAGGTTGTTCTTGCGCCGGCTTAAGGTAGAGCTGAAGCTGCCGGTACTCGCATTGGT
GGACTCTGATCCATATGGGCTGAAGATCTTGTCCGTGTATATGTGCGGCTCCAAGAACATGTCGTATGACAGTGCCAATC
TGACAACGCCAGATATCAAGTGGCTTGGCGTGCGGCCAAGTGATCTGGACAAGTACAGGGTACCGGAGCAGTGCCGGCTT
CCCATGACTGATCACGATATCAAGGTAGGAAAAGAGATGCTAGAGGAAGACTTCGTAAAGCAAAATGAAGGATGGGTCAA
GGAGTTGGAGACGATGTTGCGAACAAAACAAAAGGCTGAGATTCAGGCTCTCAGCTCCTTTGGGTTCCAGTACCTGACTG
AGGTATATCTACCCCTCAAGCTGCAGCAGGAGGACTGGATTTGAGATCTCTTCTGATGGCAGGTGAATAGATGATCGTGT
TGCTCTTTATCTTTGTGTTCATGTTGAGTTTGGTTGGTTTCATTACTGATCCAATACATTCTCATCTTCTTGATGCATTT
TACCAAGGACATAAGCCTTATGCAAGTT-AGTATAAAAATGTTATCATCTGTGACTGGGAATTACTCCCTCTGTCCCGTA
ATATGCGAGTGTTTTTTACACTAATATAAAAGTGTTTTTTACACTACACTAGTGTCAAAAACGTCTTATATTATGGGACG
GAGAGAGTAGTATTCAGTGTACCTTGGCATTACATAAGGGCATCCTTCCTCATGATTAGTAGACTGACAAAAGCGTAGAA
TATTCAATCAGGATGCACGAGTTAACCAATATTGCTACTAAACGTGGTATCATGTTTCCAGCTGCAGATGATACAGAGAA
AGAGCAGCTTGATCTAGGAGCATCAATTTGACACCTGCGGGGGGCTAGCTTAAAAATACCTCATCTGTGCTGCATAACAT
TTGTGCGGCAGTCCCTTTGTATGATTTTATGTATTTGAAAAACTGTATGTTGTGTACTTGTGATATCTGCATTTAGAAGT
ATCTGCATCTGTGGAATTAGATATGACTTATGTGTATTTGAAAATTTGTATGTTGTGTTTTTCTTGTACTGCTGAAGATA
GAATTTGGTGTAAGTTCTGATGCCTGTATTTAGAAGCTAGCATTCGCATCTGGAAAATCGGTTGCAAGAGATTAGAG--C
TACTGCCATACTTTAG---TTTTTTTTGGAAGGGATACTTATGTTTATCTGT----------------------------
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-------------------------------------ATATCCTGCTAAAACAAAATGTAGTTTGTTTCAATATTTATCT
GTGCAAACGCATGCACAGGTCAGATCACCTGAAAGCTTTGGCCTCTTTGGTTGAAACTAGCATAGCCCGTGCGATGGCAC
GCTGCGCCTGATGATGCATTATATTTATACGGATCGTAAAGGCCATTGTTATATTTTTAATGATAGAATTGCATAACTAA
AACCCAGAAAGAGTTCTAAAAGGTGGAAAATGAGTACATTTATTGCAGCCATGTATGATAAATACTGATCAACAGAAGTG
TACACGCTACTCATAAGGTCTACTTATTGGCACATTATAAAGACCGTTCTACTTGGTCACGGTTTAGAAGGCGCGCTTGG
AAATTCTCTGGAACCTAGGTGGTTATCTATTGGTTGTGAGATGGGCTAAAAAATAACATTCGCACTACGCATGCATATAG
AAATAGTATATCGGAGTACTAATTAGCTACTAGAAATAAATGCAATACGCCCTAAACCTTGTCTATTGTGGAAACGCACG
CAAATTTAACTGTGCCTTCTAAACTGTGACGGAGGAAGTATGGAACATACCATATACAATGATGCAACTGCATAAAAGTA
AATGATTGCGGATGGCCTAATTGAGTTAAATCATCCTAGTGTAGCCTCCTGTAAGATAGTTTGTAATGAAATAGTCAAGA
GCTTTTGCAAATTCCTCTACCTGTTCAACGGGTGTCTTAGCTCTTTTATATGTAATGATGGGTTCATCTCTATGAGGACG
TTGGGATACATGCGAAGAAGTGCCACGTCGGAGAAATCATTGCATATTATCGCCAAAATCATTATTTATCTTGCAAATTC
ATTCTGTTGGGTACTTACTTGCTAGCGAGCCATGTTAAATTTCCATGCCCGTGCGGTGGCACGCCGCGCCTATTGATACT
TTATGTGAGAAATTCTATGTACAATAATATTAAACTTCATATACCAATTATTTAATTATTTTATTCACTTTTTACGTGTT
CACTTCAAATTTTATATTATGGTGTATGTAAAAAAATTATATTGGTACAAATGCTATAATCTTTCATAAAGAAAATTTTT
ATTGAATGAAAAGAGTCAGTATATTAATTGTACATAAAGAGAATACATATTGATATTGCATGATAAATTTCTGATTCCTT
GGTAATTCAAGGCATCCTTGTTTGACCGCCCATTGGTTTTGTGTTCGTAATGAAATGATAGCTGAGGAAGTTCACATCAG
TAGTTAACATGATAGAGCTTGTATATGGGGCAGTTGTTCGTAAGAAAAACAGATTGTTAATGCCTTGCAATTGCTTCCGG
CTTTTCACCCCGCAAGGGTCTTATTATGTAAGTTAATAGTATGTCATCCAAATTCATCATAGCTTGATGCATCCATACAA
TAAATATGAGAAGGGATCGTTCAGAAAAAAATATGAGAAGGGGTTAAAACCATATCTCTAGTATTGATGCCTACATACAA
CAAATATGATAAGGGGGTAAACCCATATTATTCAGTCTTGATGCTTGCATAGAACAAATATTAGAAGGGAGTAAATCATG
GTCATCCCAAAAACCATATCATCAAATTAACAGCAGATGCAGCAAATCACACGGGACCATGAAGAATATATCCCACACCG
GAACCACCGTGGGTTTAACGGTTGCAAATTCCTGCACCAAGGACAGATAGTAAATGTTTGCAGTAATGATGAAAGGGATA
CTATACCTTAAGAGCACAAAAAAAAACTAAAGCTAAATAACACCAATCAGTTAGTGGCCATCTCTGAACCTTTAGTCTAC
AAGAAAAGGCTTCAAAATAATCGACAGAAGCAATCCCTGTATGGATTATCAAGAAGAAAGAGGATCAGGAGAAACCTTGT
CTCATTACATAGCAATGATAGCACCAAAATTTTGACCACTTGCAAATCTCCCCCGCTATTGAGCTGCACAAAAAATATGA
GAGAGAGAGAGAGATGATCACACGAACCTGGACGTATGCGAAACCTCGTCGGACCATGCAAGGGGATACAACGCGGATGG
CATGCATCGCGGTTTGAGTGCACTTCATGTTCAATAGCATCACATAGCAGTGCAGTGCGCAACGCCAGGCCGTGCCTTGC
TGATGGACGTTTCACGTTGAGATCCACGTACTCATCCACATGCCCACAACATCATCAGCAACAGCCGATCCTGGCTAACA
ACGGACCACTCCGGCTCCAGTCGCTCCTGCGCAGTGTGGCCGCCTTCGAGACCATCCTACTGTCTGCCTCCCCTCCGCCC
CGACGCTGCAACCTAACCCCTTGTCGGCGCCACAGAGCAACCTGCTGTCTGCTGCACCAGGAGCATCCGCCCTCGCCATT
GTCACACCGCTCGCACCGGCAAGTGATCGTTATCCGGCGGTGGTGATGCCGTCGTCGTTGTCATTGAGTTGTTGCCGCAG
GATTTATGCTCCCCGAATAGGGCGTCCTACTACGTCCGAGCGGAGACCATGGCCCCGCCAAGGGGATACGCAAGCGTCGG
CCGCCGGGACACCCGGTTTCCGCGCAGCCCGTAACCAATCGACAACATCTTCGACGTAGTCACTGTCGGCCGCGGACGGC
CGGTTGGACGGACTCACGGCGATGCCGGAGCCGAAGCTGTGGCTGATCCTCACCAGGCCCGCCAGCACCGCAAAGAAGGT
CAGGGGAGATTACGAGGCCCGGGGCAGCAACAGCGAGTTGCCGACAGCCAGGGCGCGGCGGCGGCAACGGCCGATCATCA
GAGGACGAAGCATGCTCCATACATACGGGCCGAGCCGAGACAACGATCGGCGCAACAAGACAACCCGAACCACCACACCG
GCCAACCAGAGCTCCCCGCGACGGAGGAGGCCGAGCAGGACGCCGCGTTCCATTACGACAGGAAGAAGGATATACCATAG
AAACAATATATGCTAACCCAAAAAAAAAACTAGCACAATGATATGAGAAGAAGGACGATCTATTTATAACCCCCAGAACG
TAAGCGATGGTGGTATGTGGCGAGGTTTCGTGATCAAACGACTACAGGGCGCAAACCAGAAACAAAAAGCAGACTCTAGA
TCAAAACATGAAAGCGGCACCGATCAAAAAACACAAGAACCCTCCAGATCAGGTGATGGAAGCGGCACCGTTTTTCACCA
TAGAGCGGGAAAATCGCTAACCGCACCCAACCGCACCCAAGAATTCAGCACACAAGTTCAAAAAATTTGAAACTAAACAC
CAAATCCACAAAGCATTTGTACACAGCCATTTACCAAAATAATACCATGTGCCAAGCCCAAAATTCATCATGGGTCACTT
TCATCCAAGTGGATGAATGTTGGGGCAAAAACCTTGCCTGGAATAGAGGCTTGGGTATGATTTTCGTAGATTGTATGGAG
GATTAGAATCTTTAGAAATTATTTCCCAATTAGTTGTTCTGATTCTTCAGAAATTATTTCTGGATTGGTTAGGATTGAAT
CCTATAGGAACTTTTCCTAAGGATTCCACTGTACTACATCTCATAGAAAAGTTAAGCATCCACTCAAACCTCTTGGAAAG
AACCCTTTGTTTCCCAATCAAACAAACCAAAATAATGCAAGGTTGGAATAGGCATGACATTCA
>SNPs
SS----------------S---------S--S----------------------S--S--S-S---S-S----------S
--S-------------S-S--------------S---SS------S----S-----------SSSSSSSSSSSS------
--------------------SS--S------S---S------S--SS-------S-----------------S-S-----
------------------------------S-S-S------S------S--------SS----------S----------
-S------S------------------S-------SS---S--S----S--S----------------S--S-S-----S
-----------S-----S--------------S-------------S-------S----S---S-S-SSSSSSS------
---------------------SS----------SS--------------SS---------S--------SSSSSSSSSSS
S--S----------------S---SSS-S--SSSSSSSS---SS-SSSS----------------------------S--
-------------------S------S------S-S------------S----S-------------SS-----------
--------------S-----------------------------------------S-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------S-SSSSS---------------------------
-----------------------S-------------------------------S------------------------
--------------------------------------------------------------------------------
----------S---------------------S------------S------------------S---------------
---------------------S----------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------S----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------S-----------S--------------------S------------------
--------------------------------------------------------------------------------
------------------------------------------------------S-------------------------
----------------S--------------------------------------------S------------------
-----S-----------------------------------------------------------S--S-----------
---------------------------------S-----S-----S----------------------------------
----------S---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------S---S--
---------------------------------------------S----------------------------------
---------------------------------------------S----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------S---------------------------------------S----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------S------------------SS-
----------------S-------SS------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------S-------------------------------------
S--SSSSSS-----------------------------------------------------------------------
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-----------------------------------------------------------S-----------------S-S
---------------------------------------------SS----------------------------S--S-
---------------------------------------------------------------
>forward_357
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-----------------GGGAAAGGGAGGCTGTTGAA-------------------------------------------
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>reverse_2869
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--------------------------------------------------------------------TCTCGCATTGGT
GGACTCTG------------------------------------------------------------------------
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>forward_364
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------------------------GGAGGCTGTTGAAGATGCTG------------------------------------
--------------------------------------------------------------------------------
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>reverse_2926
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---------------------------------------------TGGCTCCAAGAACATGTCGT---------------
--------------------------------------------------------------------------------
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>forward_777
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--------------------------------------CCGGGTGTAGATGGACAGC-----------------------
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>reverse_2971
--------------------------------------------------------------------------------
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----------GGATATCAAGTGGCTCGGCG--------------------------------------------------
--------------------------------------------------------------------------------
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>forward_1851
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----------------------------------------------------------------------CCACACTCCA
GTTCGAATCCT---------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_3756
--------------------------------------------------------------------------------
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---------------------------------------------------------------------------TACAT
TTGTGCGGCAGTCCC-----------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------
