>input_sequence_54416
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------------AGTTCAGGAGCTCAAGCGCGCGGCAATGGCGGCCCCCGCTGCTGAAGCCCCGGCG------------C
CCGTCGCGGCCCCCGTTCTCCCTCCTGCC---AGAAGCAAGGATGCGGATCCGGCTCGTCTCCAAACCTCGCCGCTCCTT
CCGGCCGCAGGCTGGTCGGACCTCCCGCCCGATCTCGTCCGCCGCGTCGCCGACTCCCTCGTCGCCGCCAACGACCTCGA
CTGCTACATGGACTTCCGCGCCGTCTGCTCCGGCTGGCGCGCCGCCACCGACGACCCCAGGA------GCGACCCCTTCG
ACCCCCGCTTTCGCCCGCGCCGGTGGGTCATCCTGG--------------------------------------------
----ACGACGGCGACGAC------------------------CTGCTGCTGCTGAACGCCGCCACGGGGCGCTTCCTCCG
CAAGAGGATCCCGCTGCTCCGCCGCTACCACGTCCTCGCCGCCACTCCCGGCGGCTTCTTCGTCCTGGCGGACAGGTACC
CTTCTCGAGCCGCCTGCGTCTTCAATCCTCTCACCGGCGTCCTGATCCGGTTCGCGGCACCCGTACCCACCAAGAAGGTC
GCCGCCGCCACTGTCGTCTTCGGTC---GCAGCTCTTGGCCCACGCTCACGCTCAACTTGCTCTGCGACTCTCCTTCCAA
AAGTTACTCGGCCACTCCTGACATGGCAAGTTTCCAAGAAAAGGAGGTGCAGTTGCCCATTGAT----------------
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--------------------------------------------------------TGTCATATCTCATTGAAGGCAGTC
AGAGGCGGTGTCTACGCCGACGGTGGTGGCGCTGCGCAGGGATACAGGCACGGGGTTTCTGTTATATTCG----------
----------AGATCTTCGATTTGATACAGTCACTTCATGTCCATCCATCAATGTTTTATGCTGAGGATCTTCCTGTGGC
CGGACACGCAAACGACCATACCCGTTTTTTCATCGTGGAATTCGGTGGAGAAGTGCTGATCATCATCAAGCTGCAGCGAT
GCGTCAAGGTTTTCAAGATGGACATCGGTAGCATTGTGCCTGTGGAGAGCATCGGCAGCCATGCCATCTTCATCGGTCAT
CACAGGTGCCTGGCTGTTGACACCGATAAGTTTCCATCTGTTGAGTCCAACTGTCTCTACTACGTTGAGCGCCTGGGTTC
GTCCGCGTACATCTGCATGTACAATCTCAAGGACGAGAAAGACGAGAGGATCTCAGCTGGCGCTGTAGATTTCGTGAAGC
TGCACGAGTTGTTCGTCCTCGCCGCCCACCGCCCTTTCACCATCATCCAGCTTCTCTCCAGCTACACCATCAATGTCTGG
GATTCTCAACTGCCGCTACAACAGGGCGCCAACTAACTTTTGGCTATGAAATGGTTTGACTTTCTCTCTAGTAC------
-----------------------------------------------------------------------------CTT
GCTAAGAAA-----------------------------------------------------------------------
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>chr3D_1_TraesCS3D01G458200
CCTAGAATGGAGAAAGCACCTAAAGAAACCCCC-ATTAAGTTTAACGGTAAAACTTGCTGTAGTGACGCATGTCATGATT
ATGTCAATCCACATAGGCGCAAAACCCATCTTGTACATCATATACTCAAGGAAGACCCACTCCAGCCTATCGTAAGACTT
CATCATATTAAGCTTCACCACACATAAATATTTCTTTTTGTTCCTCTTACGTAC--------------------------
----------------GAGCCTTTCGGGGACGAAAGCACTTTGTTCCTCCGAGATGAGCACCGAAAGAATCATCTTCAAC
CTATTGGGCAGCACCCTGGTTGCAATCTTATAGAAAACATTGCAAAGACTAATCGGTATACATTGTAACATCAG---CTC
CGGAGTTTGGGATCATCACAATCACAGTAGCATTG-AAAGATGTCGGAGTTGCTGCCCCATTCAAGAAATCACGAACTGC
CCCGCATACCTCATGTTTTACCAACGAGCAGTGACGCTGATAGAACAACGCCGGGAGCCCATCTGACCTGGGATCTTTGG
TTGGCCCCATTTCACCATTTGGAACAGCGAGGTTTCAGTCTCCTCATCGGCCATAGTCGTCGTGAGCTTGGAGTTCATCT
CGCCGGAAAACCGCCAGTCCGATATTATCCAGCAAGGCATTAGCGCCAACCGATCCATCAGAGGCAAAAAGGTTTTCGCC
GTG-TTTTTTGAAATAAATAAATCAAGTAATGGCATTGGGAATTAAAATGGTAAGTTATGTTTTTCTTTTTCTTTTTTGA
AGGAGATTGGGCATGGTTCACAGTCCAGTCCAC----TACTCTACCTACTCGGCACTGGCGATCCTTGTTCCCCTTTTCC
TCCGTCTCTCCCCTTCTTTGGTTCTTCAATTCTCCAAATTTATCCACTCTGCTTGTGTTGGTCTGCTGATCTGGTGAGCA
ATCCCTCCTCTACTAGGTCGATTCCGTTGTTTCCATTACGCATTCACGCTGCTCACCCACAAATTTGTACTATCGACGAT
TAGTTAGGGTTCAGTTCAGGAGCTCAAGCGCGCGGCAATGGCGGCCCCCGCTGCTGAAGCCCCGGCG------------C
CCGTCGCGGCCCCCGTTCTCCCTCCTGCC---AGAAGCAAGGATGCGGATCCGGCTCGTCTCCAAACCTCGCCGCTCCTT
CCGGCCGCAGGCTGGTCGGACCTCCCGCCCGATCTCGTCCGCCGCGTCGCCGACTCCCTCGTCGCCGCCAACGACCTCGA
CTGCTACATGGACTTCCGCGCCGTCTGCTCCGGCTGGCGCGCCGCCACCGACGACCCCAGGA------GCGACCCCTTCG
ACCCCCGCTTTCGCCCGCGCCGGTGGGTCATCCTGG--------------------------------------------
----ACGACGGCGACGAC------------------------CTGCTGCTGCTGAACGCCGCCACGGGGCGCTTCCTCCG
CAAGAGGATCCCGCTGCTCCGCCGCTACCACGTCCTCGCCGCCACTCCCGGCGGCTTCTTCGTCCTGGCGGACAGGTACC
CTTCTCGAGCCGCCTGCGTCTTCAATCCTCTCACCGGCGTCCTGATCCGGTTCGCGGCACCCGTACCCACCAAGAAGGTC
GCCGCCGCCACTGTCGTCTTCGGTC---GCAGCTCTTGGCCCACGCTCACGCTCAACTTGCTCTGCGACTCTCCTTCCAA
AAGTTACTCGGCCACTCCTGACATGGCAAGTTTCCAAGAAAAGGAGGTGCAGTTGCCCATTGAT----------------
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--------------------------------------------------------TGTCATATCTCATTGAAGGCAGTC
AGAGGCGGTGTCTACGCCGACGGTGGTGGCGCTGCGCAGGGATACAGGCACGGGGTTTCTGTTATATTCG----------
----------AGATCTTCGATTTGATACAGTCACTTCATGTCCATCCATCAATGTTTTATGCTGAGGATCTTCCTGTGGC
CGGACACGCAAACGACCATACCCGTTTTTTCATCGTGGAATTCGGTGGAGAAGTGCTGATCATCATCAAGCTGCAGCGAT
GCGTCAAGGTTTTCAAGATGGACATCGGTAGCATTGTGCCTGTGGAGAGCATCGGCAGCCATGCCATCTTCATCGGTCAT
CACAGGTGCCTGGCTGTTGACACCGATAAGTTTCCATCTGTTGAGTCCAACTGTCTCTACTACGTTGAGCGCCTGGGTTC
GTCCGCGTACATCTGCATGTACAATCTCAAGGACGAGAAAGACGAGAGGATCTCAGCTGGCGCTGTAGATTTCGTGAAGC
TGCACGAGTTGTTCGTCCTCGCCGCCCACCGCCCTTTCACCATCATCCAGCTTCTCTCCAGCTACACCATCAATGTCTGG
GATTCTCAACTGCCGCTACAACAGGGCGCCAACTAACTTTTGGCTATGAAATGGTTTGACTTTCTCTCTAGTAC------
-----------------------------------------------------------------------------CTT
GCTAAGAAACAGACTTGACTCT-AGGTTAT----------GT------------GGAACTGCTGTTTGTGGGCT----TA
ATTAGGACCAGATATGAACCCAATGCTCCATCTGTTTTG-CCTGATGCTATCT------TTTGTCTATTTGCACTTGTTC
TTCCATTGT-TCACTTAGTAATGCAGTCTGATGCTAGCAAATTTCAGTTCAAC-ATTTTTTCCATTTCTGAATTCAGCCC
TGCAACTGAATCGTTAAATGCATGCGTCTCTCTGTTGTTTCCATTATATTTTTGTTAATATTTCAGTATGCTGAATCGTT
GAATGCATGCGTCTCTCTGTTGTTTCCATTATATTTTTGTTAATATTTCAGTATGAATGTAGGCTCAG-TTTTTTCCGCC
TTTCTGAATCTGGCT-CTGCAATTGAACCGTTGAACAGTTATCA--TACCTGGTTGTTCCCCGTAGTTTTTGTTCCTTGT
TGGATTTCTCATATCTCA----------------------------TTGCAGCTTAACATTGATGTTAAGATGTGCTGTT
CATATACAAATTTCTGACAATTTGTGGTTGCTGCTTCTAGAGGGATTCTGTAGATTCAGATATTTTGCATATTTTCTCTG
GGCAGATACTCTATGTTCACATAAATTGTAAGTATCCTGTTCTGAGGATAAAGGCGTTCTGATTGAATCATAC--TATAA
---------------------------------------------------------------------------AATAA
TGTTGGTTCAGTATATAGGGATATTGCTTGGTTATGCAGGGGGGGAGTAACATCAAACTCATACGTACTAAATACTCCTA
GATACTAG---GTGAGAGTACGTAGATTTTATTTTTCCTGCTAGCCGTTTTTTGCAG-TTATATTTGGATTCGAATGGGT
ATTCAGACATCAGGTTATATATATAC--ACATTGGCCTAATTGGACCGACTTTAACCATGCAATTTGAATATTGGCAATG
TGCTGTTGCAACTTCACTCTTACTC-GTGTCAGTCATAGGTTATATATAATTATGTCTAGTGCCATAG-TAGATTTTAAA
TGGAAGCGATCCTGGTGCTTGTGTTGCTTGATATGAATTGAT
>chr3B_1
CCTAGAAGGGAGAAAGCACCTAGAGAAACCCCCCATTAAGTTTAAGTGAAAAACTTTCTATAGTGACGCATCTCATGATC
ATGTAAATCCACATAGGCGCAAAACCCATCTTGTACATCATATACTCAAGGAAGACCTACTCCAGCCTATCGTAAGCCTT
CATCATATTAAGCTTCACCGCATATAAATGTTTCTTTCTCTTCCTCTTACGTATAACATGTAGAGACTCATATGCAACCA
ACACATTGTCCATTATGAGCCTTTCGGGGACGAAAGCACTTTGTTTCTCCGAGATGAGCACCGGAAGAATCATCTTCAAC
CTGTTGGCCA---CCTTGGTTGCAGACTTGA--AAAACATTGCAAAGATCGATCGGTATCAATTGTAACATCAGCTCCTC
CGGTGTTTGGGATCATCACAATCACAGCAGCATTCAAAAGATGTCGGAGTTGCTGCCCCATTCAAGAAATCACGAACTGC
CCCGCAGACCTCATGTTTTACAAGCGAGCAGTGACGCTGATAGAACAACGCCGGGAGCCCATCTGACCTGGGATCCTTGG
TTGGCCCCATTTCACCATTCGTAACAGCGATGTTTCAATTTCCTCATCGACGATAGCCGTCGTGAGCTTGGAGTTCATTT
CGCCGAAAAACCGCCAGTCCGATATTATACAGCAAGACAATAGCGCCAGCCGATCCATCAGAGGCAAAAAGGCTTTCACC
GTG-TTTTTTGAAATAAATAAATCAAGTAATGGCATTGGGAATTAAAATGGTAAGTTATGTTTTTCCTTTTCCTTTTTGA
AGGAGATTGGGCATGGTTCACAGTCCAGTCCACACTATACTCTACCTACTCGGCACTGGCGATCCTTGTTCCCCTTTTCC
TCCGTCTCTCCCCTTCTTCGGTTCCTCAATTCTCCAAATTTATCCACTCTGCTTGTGTTCTTCTGCTGATCTGGTAAGCA
ATCCCTCCTCTACTCGGTCGATTCCGTTGTTTCCATTACGCATTCACGCTGCTCACCGACGAATTTGTACTATCCATGAT
TAGTTAGGGTTCAGTTCAGGAGCTCAAGCGCGCGGCAATGGCGGCCCCCGCTGCTGAAGCCCCGGCG------------C
CCGT------------TCTCCCTCCTGCC---AGAAGGAAGGATGCGGATCCGGCTCGTCTCCAAACCTCGCCGCTCCTT
CCCGCCGCAGGCTGGTCGGACCTTCCGCCCGATCTCGTCCGCCGCGTCGCCGACTCCCTCCTCGCCGCCAACGACCTCGA
CTGCTACATGGACTTCCGCGCCGTCTGCTCCGGCTGGCGCGCCGCCACCGACGACCCCAGGA------GCGACCCCTTCG
ACCCCCGCTTTCGCCCGCGCCGGTGGGTCATCCTGG--------------------------------------------
----ACGACGGCGACGAC------------------------CTGCTGCTGCTGAATGCCGCCACGGGGCGCTTCCTCCG
CAAGAGGATCCCGCTGCTCCGCCGCTACCACGTCCTCGCCGCCACTCCCGGCGGCTTCTTCGTCCTGGCGGACAGGTACC
CTTCTCGAGCCGCCTGCGTCTTCAATCCTCTCACCGTCGTCCTGATCCGGTTCGCGGCACCTGTACCCACCAAGAAGGTC
GCCGCCGCCACTGTCGTCTTCGGTC---GCAGCTCTTGGCCCACGCTCACGCTCAACTTGCTCTGCAACTCTCCTTCCAA
AAGTTACTCGGCCACTCCTGACATGGAAAGTTTCCAAGAAAAGGAGGTGCAGTTGCCCATTGAT----------------
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--------------------------------------------------------TGTCATATCTCATTGAAGGCAGTC
AGAGGCGGTGTCTACGCCGACGGTGGTGGCGCTGCGCAGGGATTCAGGCACGGGGTTTCTGTTATATTCG----------
----------AGATCTTCGATTTGATACAGTCACTTCATGTCCATCCATCAATGTTTTATGCCGAGGATCTTCCTATGGC
CGGACACGCAAACGACCACACCCGGTTTTTCATCGTGGAATTCGGTGGAGAAGTGCTGATCGTCATCAAGCTGCAGCCAT
GCGTCAAGGTTTTCAAGATGGACATCGGTAGCATTGTGCCTGTGGAGAGCATCGGCAGCCATGCCATCTTCATCGGTCAT
CACAGGTGCCTGGCTGTTGACACCGATAAGTTTCCATCTGTTGAGTCCAACTGTGTCTACTACGTTGAGCGCCTGGGTTC
GTCTGCGTACATCTGCATGTACAATCTCAAGGACGAGAAAGACGAGAGGATCTCAGCTGGCGCTGTAGATTTCGTGAAGC
TGCACGAGTTGTTCATCCTCGCCGCCCACCGCCCTTTCACCATCATCCAACTTCTCTCCAGCTACAGCATCAATGCCCGG
GATTCTTAACTGCCGCTACAGCAGGGCGCCAACTAACTTTTGGCTATGAAATGGTTTGCCTTTCTTTCTAGTAC------
-----------------------------------------------------------------------------CTT
GCTAAGAAACAAACTTGACTCTTAGGTTAT----------GT------------GGAACTACTGTTTGTGGGTT----TA
ATTAGGACCTGATATGAACCCAATGCTCCATCTGTTTTG-CCTGATGCTATCT------TCTGTCTATTTGCACTTGTTC
TTCCATTGT-TCACTTAGTAATGCAGTCTGATGCTAGCAAATTTCGGTTCAAC-TTTTTTTCCATTTCTAAATTCAGCCC
TGCAACTGAATCGTT-----------------------------------------------------------------
GAATGCATGTGTCTCTCTGTTGTTTCCAGTATAGTTTTGTTAATATTTCAGTATGAATGTAGGCTCAGTTTTTTTCCGCC
TTTCTGAATCTGGCT-CTGCAATTGAACTGTTGAACAGTTATCA--TACCTGGTTGTTCTCCGTAGGTTTTGTTCCTTGT
TGGATTTCTCATATCTCA----------------------------TTGCAGCTTAACATTGATGTTAAGATGTGCTGTT
CATATACAAATTTCTGACAACTTGTGGTTGCTTCTTCTAGAGGGATTCTGTAGATTCAGATATTTTACATATTTTCTCTG
GGCAGATACTCTATGTTCACATAAATTGTAAGTATCCTGTTCTGAGGATAAAGGCGTTCTGATTGAATCATAC--TATAA
---------------------------------------------------------------------------AATAA
TGTTGGTTCAGTATA--GGGATATTGCTTGGTTATGCAGGGGTGGAGTAATATCAAGCTCATATGTACTAAATACTCCTG
GATACTAG---ATGAGAGTACGTAGATTATATTTTTCCTGCTATCCGTTTTTTGCAG-TTATATTTAGATTCGAACGGGT
ATTCAGACATCAGGTTATATATATATACGCATTGGCCTAATTGGACCGACTTTAATCATGCAATTTGAATATTGGCAATT
TGCTGTTGCAACTTCACTCTTACTC-GTGTGAGTCATCGGTTATATATAATTATGTCTAGTGCCATAG-TAGATTTTAGA
TTTAAGCCATCCCGGTGTTTGTGTTGCTTGATATGAATTGAT
>chr3A_1
CCTAGAAGGGAGAAAGCACGTAAAGAAACCCCC-ATTAAGTTTAACGGTAAAACTTGCTGTAGTGACGCATGTCATGATC
ATGTCAATCCACAT-GGCGCAAAACCCTTTTTGTACATCATATACTCAAGGAAGACCCACTCCAGCCTATCGTAAGACTT
CATCATATCAAGCTTCACCACACATAAATATTTCTTTTTTTTCCTCTTACGTATAACATGTTCACACTCATATGCAACCA
ACACATTGTCCGTTATGAGCCTTTCAGGGACGAAAGCACTTTGTTCCTCCGAGATGAGCACTGGAAGAATCATCTTCAAC
CTATTGGCCAGCACCCTAGTTGCCATCTTATAGAAAACATTGCAAAGACTCATCGGTATAAATTGTAACATTAG---CTC
CGGAGTTTGGGATCATCACAATCAAAGTAGCATTGAA-AGATGCCGGAGTTGCTTCCCCATTCAAGAAATCACGAACTGC
CCCGCAGACCTCATGTTTTACCAGCGAGCAGTGACGCT-ATAGAACAACGTCGGGAGCCCATCTGACCTGGGATCTTTGG
TTGGTC--------CCATTTGGAACAGTGAGGTTTCAATCTCCTCATCGGCGATAACCGCCGTGAGCTTGGAGTTCATCT
CGCCGGAAACCATTAGTGCA-ATATTATCCAGCAAGGCATTAGCGCCAACCGATCCATCAGAGAC-AAAAGGCTTTCACC
GTGTTTTTTTGAAATAAATAAATTAAGTAATGGCATTGGGAATTAAA-TGGTAAGTTATGTTTTTCTTTTTCTTTTTTGA
AGGGGATTGGGCATGGTTCACAGTCCAGTCCAC----TACTCTACCTACTCGGCTCTAGTGATCCTTGTTCCCCTTTTCA
--------TCCCCTTCTTCGGTTCCTCAATTCTCCAAATTTATCCACTCTGCTTGTGTTCGTCTGCTGATCTGGTGAGCA
AATCCTCCTCTACTCGGTCGATTCCGTTGTTTCCATTACGCATTCACGCTGCTCACCCACAGATTTGTACTATCGACGAT
TAGTTAGGGTTCAGTTCAGGAGCTCAAGCGCGCGGCAATGGCGGCCCCCGCTGCTGAAGCCCCGGCGGCCGTCGCGGCCC
CCGT------------TCTCCCTCCTGCC---AGAAGGAAGGATGCGGATCCGGCTCGTCTCCAAACCCCGCCGCTCCTT
CCGGCCGCAGGCTGGTCGGACCTCCCGCCCGATCTCGTCCGCCGCGTCGCCGACTCCCTCGTCGCCGCCAACGACCTCGA
CTGCTACATGGACTTCCGCGCCGTCTGCTCCGTCTGGCGCGCCGCCACCGACGACCCCAGGA------GCGACCCCTTCG
ACCCCCGCTTTCGCCCGCGCCGGTGGGTCATCCTGG--------------------------------------------
----ACGACGGCGACGAC------------------------CTGCTGCTGCTGAATGCCGCCACGGGGCGCTTCCTCCG
CAAGAGGATCCCGCTGCTCCGCCGCTACCACGTCCTCGCCGCCACTCCCGGCGGCTTCTTCGTCCTGGCGGACAGGCACC
CTTCTCGAGCCGCCTGCGTCTTCAATCCTCTCACCGGCGTCGTGATCCGGTTCGCGGCACCCGTACCAACCAAGAAGGTC
GCCGCCGCCAGTGTCGTCTTCGGTC---CCAGCTCTTGGCCCACGCTCACGCTCAACTTGCTCTGCGACTCTCCTTCCAA
AAGTTACTCGGCCACCCCTGACATGGAAAGTTTCGAAGAAAAGGAGCTGCAGTTGCCCATTGAT----------------
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--------------------------------------------------------TGTCATATCTCATTGAAGGCAGTC
AGAGGCGGTGTCTATGCCGACGGTGGTGGCGCTGCGCAGGGATTCAGGCACGGGGTTTCTGTTATATTCG----------
----------ATATCTTCGATTTGATACAGTCACTTCATGTCCATCCATCAATGTTTTATGCTGAGGATCTTCCTGTGGC
CGGACACGCAAACGACCATACCCGGTTTTTCATCGTGGAATTTGGTGGAGAAGTGCTGATCGTCATCAAGCTGCAGCGAC
GTGTCAAGGTTTTCAAGATGGACGTTAGTAGCATTGTGCCTGTGGAGAGCATCGGCAGCCATGCCATCTTCATCGGTCAT
CACAGGTGCCTGGCTGTTGACACCGATAAGTTTCCATCTGTTGAGTCCAACTGTGTCTATTACGTTGAGCGCCTGGGTTC
GTCCGCGCACATCTGCATGTACAATCTCAAGGACGAGAACGACGAGAGGATCTCAGCTGGCGATGTAGATTTCGTGAAGC
TGCACGAGTTGTTCGTCCTCGCCGCCCACCGCCCTTTTACCATCATCCAGCTTCTCTCCAGCTACACCATCAATGTCCGG
GATTCTCAACTGCCGCTACAACAGGGCGCCAACTAACTTTTGGCTATGAAATGGTTTGACTTTCTCTCTAGTACTCCCTC
TGTAAACTAATATAAGAGCGTTTAGATTACTACTTTAGTGATCTAAACACTCTTATATTAGTTTACGGAGGAAGTACCTT
GCTAAGAAACAGACTTGACTCT-A-GTTAT----------GT------------GGAACTGCTGTTTGTGGGCT----TA
ATTAGGACCAGATATGAACCCAATGCTCCATCTGTTTTG-CCTGATGCTATCT------TTTGTCTATTTGCACTTGTTC
TTCCATTGT-TCACTTAGTAATGCAGTCTGATGCTAGCAAATTTCAGTTCAACATTTTTTTCCATTTCTGAATTCAGCCC
TGCAACTGAATCGTT-----------------------------------------------------------------
GAATGCATGCGTCTCTCTGTTGTTTCCATTATATTTTTGTTAATATTTCAGTATGAATGTAGGCTCAGTTTTTT-CCGCC
TTTCTGAATCTGGCT-CTGCAATTGAACCGTTGAACGGTTATCA--TACCTGGTTGTTCCCCGTAGGTTTTGTTCCTTGT
TGGATTTCTCATATCTCA----------------------------TTGCAGCTTAACATTGATGTTAAGATGTGCTGTT
CATATACAAATCTCTGACAATTTGTGGTTGCTGCTTCTAGAGGGATTCTGTAGATTCAGATATTTTGCATATTTTCTCTG
GGCAGATACTCTATCTTCACATAAATTGTAAGTATCCTGTTTTGAGGATAAAGGCGTTCTGATTGAATCATACTATATAA
---------------------------------------------------------------------------AATAG
TGTTGGTTCAGTATA--GGGATATTGCTTGGTTATGCAGGGGTGGAGTAATATCAAACTCATACGTACTAAATACTCCTA
GATACTAGTAGATGAGAGTACGTAGATTCTATTTTTCCTGCTAGCTGTTTTTTGCAG-TTATATTTAGATTCGAATGGGT
ATGCAGACATCAGTTTACATATATAC--ACATTGGCCTAACTGGACCGACTTTAATCATGCAATTTGAATATTGGCAATG
TGCTGTTGTAACTTCACTCTTACTC-GTGTCAGTCATAGGTTATATATAATTATGTCTAGTGCCATAG-TAGATTTGAAA
TGGAAGCGATGCTGTTGTTTGTGTTGCTTGATATGAATTGAT
>chr3D_877
CTGC----------------------------------------------------------------------------
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-----------------------------------------------------TGTGCTCGTCTGCTGATCCGGTGAGCA
AATCCCCCCCCACTCGATCGATTCCGTTGTTTCCATTACGCATTCACGCTGGTCACCCACAAATTTGTACTATCGATGAT
TAGTTAGGGTTCAGTTCAGGAGCTCAAGCGCGCGGTAATGGCGGCCCCCGCTACTGAAGCCCCT----------------
--GT------------TCTTCCCCCCGCC---AAAAGGAACAAGGCGGATACGAGTCTTCTGCATACCTCAGCGGCCCTT
CCGGCCGCAGACTGGTCCGCCCTCCTGCCCGATCTCGTCCGTCGCGTCGCTGACTCCCTGCTCGCCACCAACGACCTCGA
CTGCTACATGGACTTCCGCGCCGTCTGCTCCGGCTGGCGCGCCGCCACCGACGACCCCAGGA------GCGACCCCTCCG
ATCCCCGCTTCCGCCCGCAGCGGTGGGTCATCCTCGACGACGGCGCCGACCCCCGCTTCCTCCCGTACCGGTTGGTCTTC
CTGAACGACGGCGCCGAC------------------------CTGCTCCTGCTGAACGCCGCCACGGGGCGCTTCCTCCG
CAAGAGGACCCCGCTGCGCCGCCGCTACTCCGTCGTCGCCACCACTCCTGGCGGCCTCTTCGTCCTGGCCGACCGGAACC
ATTCTCGAGCCGCCTGCGTCTTCAATCCTCTCACCGGCGTCCTGATCCGGTTCGCGGCACCCGTGCCCACCGAGGAGGTC
GCCGTCGCCACTGTCGTCTTCGGTC---GCGGCTCTTCGCCCACGCTCA------ACTTGTTCTGCGACTCTTCTCTGAA
CTTTTACGTGGCTGCTCCTGTCAGTGAAAGTTTCAACAAACATAATGTTTCCAC---------T----------------
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--------------------------------------------------------TATTATTTCTTACGGAAGGCGGTC
AGAGGCGGGT-----------------------------------------GGGGATTATGTTATCCATGGAGGTATTTT
GTTATGTGCAAGATCTTCGATCTGATCGAGTCGCTTCATGTCGATCCGATCAAGTTCTTCTCTCAGGATCTTCCTGTGGC
CGGGCACACCAACGACCACGGCTGGTGTTTCCTTGTCGAATTGGGTGGCCAAGTGCTGGTTGTCATCAAGCTGCACCGAT
GTGTCAAGGTTTTCAAGATGGAAGTCGATAGCATCGTGCCTGTTGAGAGCATCGGTAGCCATGCCATCTTCATTGGTCAT
CACAGGTGCCTGGCTGTTGACACCCATAAGTTCCCGTCTGTGGAGGCCAACTGCATCTACTACGTTGAGCGTCTGGCCTC
ATCTGCCTACATCTGCATGTACAATCTCAAGGACGAGGAAGACGAGATGATCTCAGCTGGGGCCGTAGATTTCATGAAGA
CAGACAAGCTGTTCGTCATTGCCCCACACCGCCCTTTCACCATCATCCACCTTCTCTCCAGCTACACCATCAATGTCCGG
GATTCTCAACTGCCGCTACAACAGGACGCCAACTAACGTTTGGCTATGAAATGGTTTTATTTTCTCTCTTAGT-------
-----------------------------------------------------------------------------CTT
GCTATGAAACAGACTTGACTCT-AAGTTATTTTAACTGTGGT------------GGAACTACTGTTTGTGGCCC----AA
ATTAGGACCTCATATGAACCCAGTGCTCTATCTGTTTTA-CCTGATGCTACCT------TTTGTCTGTGTGCACTTGTTC
TTCCCTTATATCACTTAACAATGCAGTGTGGTGCTAGCAAATATCTGGTTCAGTTTATTCCACTTCTCTGAATTTAGCCC
TGCAACTAAATCGTT-----------------------------------------------------------------
GAATATATGCGGTTATCTGTAGGTTTTGTTATTTTTTTCAGTAGCA---------AATGCAGTCTCAGTTTTTTTCCGCC
TTTCTGAATATTGCTTCTGCAACTGAATCTTTGAACATTTCAGTACCAAAT-----------GTAGGCTTTGTTCCTTGT
TTCTTTTTCATATCCTAATTCCAGGCGCTACTGCAGAATGGTCTAGTTGCAGCTCAACATTGCCGTTAAGATTTGCTGTT
TATGTCCTAATTTCTGACAGTTTGTGATTGCTGATTCTAAAGGGGTTCTGTAGATTCAGATGTTTTACATATTTTCTCTG
GGCAGGTACTCTATGTCCACATATATTGTAAGTATCCTGTTCGGCAGATAAAGGCGTACAGATTGAATCATAATATATAG
TATTACCTCCGTCCGTGTCTAGATACGGCATCCGTATCTAGACAAATCTAAGACAAATAATTTGGGACGGAATTTAATAA
TGTTGGTTCAGTATA--GGGATATTGCCGGGTTATGCCGGGTTGGAGTAATATCAAACTCATCCTAATTAGACAGATTGG
--------------------CGTAGATTCTGTTTTTCCTGCTTGCTGTTTTTCACTTATTATATTTAGATTCGAACCGGG
ATTCAGAAATCAGCTTA--TATATAT--GCATTGGCCAAATTGGGCCGACTTCAATCATGCAATTTGAACATTGGCAGTG
TGCTGTTGCAACTTCACTCTTGCTCAGTGTCATTTATAGGTTATATATAATTATGTTTAGTGCCATAGATAGATTGTAAA
TGTCAGCTATCCTAGTGCTTGTGTTGCTTGATATGAATTGAT
>chr3A_877
CTGC----------------------------------------------------------------------------
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-----------------------------------------------------TGTGCTCGTCTGCTGATCCGGTGAGCA
AATCCTCATCCACTCGATCGATTCCGTTGTTTCCATTACGCATTCACTCTGCTCACCCACAAATTTGTACTATCGATGAT
TAGTTAGGGTTCAGTTCAGGAGCTCAAGCGCGCGGTAATGGCGGCCCCCGCTGCTGAAGCCCCT----------------
--GT------------TCTTCCGCCCGCC---AAAAGGAACAAGGCGGATCCGATTCTTCTGCATACCTCAGCGGCCCTT
CCGGCCGCAGATTGGTCCGCCCTCCTGCCCGATCTCGTCCGCCGCGTCGCTGACTCCCTGCTCGCCACCAACGACCTCGA
CTGCTACATGGACTTCCGCGCCGTCTGCTCCGGCTGGCGCGCCGCCACCGACGACCCCAGGA------GCGACCCCTCCG
ACCCCCGCTTCCGCCCGCACCGGTGGGTCATCCTCGACGACGGCGCCGACCCCCGCTTCCTCCCGTACCGGTTGGTGTTC
CTGAACGACGGCGCCGAC------------------------CTGCTCCTGCTGAACGCCGCCACGGGGCGCTTCCTCCG
CAAGAGGACCCCGCTGCGCCGCCGCTACTCCGTCGTCGCCACCACTCCCGGCGGCCTCTTCGTCCTGGCCGACCGGAACA
ATTCTCGAGCCGCCTGCGTCTTCAATCCTCTCACCGGCGTCCTGATCCGGTTCGCGGCACCCGTGCCCACCGAGGAGGTC
GCCGTTGCCACTGTCGTCTTCGGTC---GCGGCTCTTCGCCCACGCTCA-------------------------------
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>chr3D_1062
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-----GCCGCCCCTGTTCCCCCGCCTGCGAAGAAGAGGAAGAAGGAGGGCCCGGCTCGTCTGGAAGAACCGCCGCTCCTT
CCGGACGCAGGCTGGCCCGCCCTCCCGCCCGACCTCGTCCGCCGCGTCGCCGACTGCCTCCTGGCCACCAACGACCTCGA
CTGCTACATGGACTACCGCGCCGTCTGCTCCGGCTGGCGCGCCGCTACCGATGACCCCAGGACCAGGAGCGCCGCCTCAG
ATCCCCGCTTCCGCCTGCGCCGCTGGATCGTCCTCGACGACATCT---------------------------------TC
CACAGCCAAGGAGAAGCG------------------------ATGCTCCTGCTAAATGCCGACACCGGCCGCTTCCTCCG
CAAGAAGCTCCCGCCGCTCAGCGATCACTCCATCGTCGCCACCACTCGCAGCGGCTACTTCGTCCTGGCCAAGAAAAGCC
CTCCTCACGCGGCCCGCGTCCTCAACCCTCTCACGGGCGTCGTCATCCGTTTCGTAGCGCCCGTGGCCCCCGACGTGGGA
TCCGCTGA---TGTCGTCTTCATTG---GCAGCTCTTGGGTCAAGCTCAC------------------------------
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>chr3A_1109
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-------------------------------------------------------TCGTCTCCGAGCCTCGCCGGTCCTT
CGGGCCGCGGGCTGGTCCGCCCTCCCGCCCGACCTCGTCCGCCGCGTCGCCGACTGCCTTCTCGCCACCAACGACCTCGA
CTGCTACATGGACTTCCGCGCCGTCTGCTCCGGCTGGCGCGACGCCACCGACGACCCCAGGA------GCGACCCCTCCG
ACCCCCGCTTCCGCCCGCGCCGCTGGGTCATCCTCCTCGACGAGGGCTTCCAGC------------------------TC
CAGAGCGACGGCGACGCCGACGGCGGCGCTGGTGGCGAGCTGCTGCTCCTGCTGAACGCCGCGACGGGGCGCTTCATCCG
CAAGAGGCTCCCGCTGCTCCGCCGCTACTACGTCGTGGCCACCACCCTCGGCGGCCTCTTCGTCCTGGCGAACAGGAACC
CTCCCCACGCCGCCCGCGTCTTCAACCCGCTCACCGGCGTCCTAGTCCGGTTCGCGGCGCCCGTGCCCGCCGAGAAGGAG
GTGTCCGCCTTCGTTAAAAGTGACAGCTCCGGCTTCTGGCCCCTGCTCG------GCTTGCTCTGCGCCTCATCTCGCAG
GCCGTGCGTGGCTGGTCCCGACAATGATAGTTTCTTCTGTTAGGTTTAATCTTGATTCATGTATCTGCATATTTAGTTTG
CTTTTGTTATGCATGTTGCATAGGTTAGAGAGTAGCTAGTCCGGTGAAGTTTCAGCGGAGGCATGCGGAGACTGCGAGAT
GCCGGGCTGCCGTGTGATACGGCGAGATGCCGGGCTGCTGATGGCGGCGTGACACCGCGGTGCCGCGCGAGGCGGCAAGG
TCGTGTGATACGGCACACACGTAGATGGCTGAAGCAGGACTGGCCGGCTGGACGGTGAGTTAGTTTGCATGAATGGAGTC
GTCGTTAGCTGCATGTATGGGTTGGTTAGTGGGCTAGCTAAAAGGTCGGTCATGTAGCCATGCATGCGTTGAGTCTGTTT
GTGCATGACCGAGTGTAGGTTAGTTAGCAGGTGATGCATATCCTGAAGAGATTCTAAGAGGAGATGGTGTTATGCCGACG
TGTGTAGGATAGTGGCCGAGTGCGTCGGTCAGCCTAGTGTGTGCGTGCGTGAGTTAGTGGCTGGGTGTGAAGTCATTTGT
ACTGCCTATTTAAGTTCAACAAATGAATGAGAATAGGGAGGCCGTGAGGGCTGAGCACCAAAGATGTAGCCAGTGTATTC
ATCAAGGAGAGAGCGCCTCGGCAAAGCTCTTGTGCTTCTTCTTGATGTATGCGTGTGTGTGTGTTGAGTCTTCTTTCCCT
TGTGTGTGTTCTTGAGAAGAGAGAAACACAAGTGAGAGTTGTGAGAGGCAACTCGAGGAAGAAGATGAAGTGCGGCGCTG
CGGGAGGCGGCGCCAACATCTTCTACGGTGGGTACAAGGCCAAGGAGTACCCTAACTACAATTCCGCACGGATGGCGGTC
GCAGGTGGTCTCTACACCAACGACGCCACAACGGGATTCATTGCAGAATCAGAAGGCTGGTTCCC---------------
--------CAAGATCTGCGATCTGATTCATGTCAATCCTCATAAAGAAGATGT---------------------------
---------------------CTGGCGTTTCCTGGTTCAACTTGGTGGACAGGTGCTGATCGTCGTCAGGCTGCGGGGGC
GCGTCAAGGTTTTCAAGTACGACGACGCCGAGCCCGTGCCCGTCGAGAGCATCGGCAGGCATGCCATCTTCGTCGGGCAC
CACAGGTGCCTCGCCGTGGACGCCGACAGGTTCCCGTCCGTCGAGGCAGACTGCGTCTACTACATTGATCGACGGGGTTT
GTCAGCCCACATCTGCGTGTACAGCCTCAGGGACGGGAAAGAGGAGAGGGTCTCTGCTGGGGCCGTCGATTTCGTGAAGC
CGCACAAGCTGTTCGTCCTCGTCGCCGACCGCCCTTTCACCGTCATCCAGCTTCTCTGCAGCTACACCATCAACGCCCGG
GATTCTCAGCTGCCTTTGAAAGAAGACGCTGGCAACG--TTGACAAAAAATGGTTTTAATTTTCTCTCTAGTCTTCGTTC
TGTTAATTTTGGCTAAGAACTTCAGAAGAGGC------------------------------------------------
---------------TGACTCT-AGGTTAATTAGATCACCTGTGGTGGATGGAAGGAAGTACTGTTTGTGGCCTTAACTA
ATTAGGACCTGATATGAACCCAATGCTCCATCTATTTTAGCCTGATGCTATCTCTCATCTCTGTTTGTGTACACTTGTTC
TTCCCTTGTTTCAGTTTGCAATGCAGTCTGGTGCTAGCAATAGTTGGTTCAGACTTTTTTGCTGTTTCTGAATTTAGCCC
TGCAACTGAACCGTT-----------------------------------------------------------------
GAATTTATGCGGTTCTCTGCAGCATTTGTTCA-TTTTTCAGTAGCA---------AATGCAGGCTCTGTTTTTC-GCTCC
TTTCTGAATTTGGTT-TCGCAGTTGATCCGTTGAACATTTGTCGCGTAGCTGGTTGTTCTCCAAAGGTTTTGTTTCTTGT
TGCATTCTCTGGTCTTGCTAAGAAACCGGTTTGACTCTTGATTAGATTACCTGTGTTGGCACTACTGTTCGTGGGCTTAA
TTAAGGCA------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------TGATATGAACCCAATGCTCCA-
---------------------------TCTGTTTTTCCTGAATGCTATCATGTGTATATGTGCACTTGTTCTTCTCTTAT
ATCACTTACTACTAATGTAGTATGGTGCTAGCAAAT--------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------
>SNPs
-------S-----------------------------------------------------------------------S
--------------------------------------------------------------------------------
---------------------------------------S-------------S--------------------------
---------------------------------------------------------------S----------------
-------S------------------------------------------S---------S-------------------
--------------------------------------------------------------------------------
------S----------------S--------------------------------------------------------
-------------------------------------S-------------S----S-----------------------
------------------------------------------------------------------------S----S--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------S-----S----------------------------------S--------------------
--------------S-----------------------------------------------------------------
--------------------------------------------------------------------------------
----S--S-----S-----------------------S------------------------------------------
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--------------------------S-----------------------------------------------------
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-------------------------------------------S------------------------------------
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------------------------S------------------------------------S------------------
--------------------------------------------------------------------------------
------------------------------------------------------S-------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------S--
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------------------------------------------------------S-------------------------
---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
--------------------------------------------------------------------------------
------------------------------------------------------------------S-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------SS-------------------------S-------S-----------------------------
-----------S----------------S-------------------------------------S-------------
-------------------------------------------------------S------------------------
--------------------------------------------------------------------------------
------------------------------------------
>forward_612
--------------------------------------------------------------------------------
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--------------------------------TTTCAGTCTCCTCATCGGCC----------------------------
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>reverse_3619
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------------------TGCATGCGTCTCTCTGTTGT------------------------------------------
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------------------------------------------
