>input_sequence_54393
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---------------------------------------------GTCGCTGCCTAGTTAATTAGCTTCTCCCGGCG---
---------GCGGCGATGGACACCTTCGGCTGGTCCGGCCCCGGCCTGCACGACGACGCCTACCTGCCCCGTCCTGTCAG
CCAGCTGAGCTGCGGCCGGTTCGACCTGGACGACGCCTTCCTCGGCCAGCTCCAGTGCGACTTCGGCGGAGGAGGCCAGG
TGAGCTCGAGCTACGGTGCTGCCGTCGGAGGCGCAGCGG---------TTAATAACGGCCCGCTGGGATTCTTTGGCTCG
GGGGTCGACGTGTTCTCGTCCGTCGTCGACGGCGCCAGCGCGCACGACGGCCTGCTCGACTCGGCGCTCGCCTTCTCCAG
CGTGCTCCCGTGCGGCGGGGAGGGTGACCCCGGGGCCGTCTCCAACGGCGCCATGTTCTCCGGCTACAGCGGCACCACCG
TCTGTAACATCTCCTCCGGGGAGTCCAACAACTACAGCGGCGGTGGCGGCGGCCACGACGTAACCGAGGTGGCGTCGCCG
ACGTCCACCATATCGCCCACCACGACGTCGCACCCCACGATTACGTCG---GCACAGCAGGTGCTCCACGTGAGCCGGAA
GCTACCCGCCGACGACTGCCCCGCGGCAGCAACGGTGCCGCCGCTCCCACGGGCCGGCACAAAGCGGAAGTCCCCCACCA
CGACAGCGACGAGCATCACGTTCGGCCAGGACACCAACACCGGAGCGGCCGGCGGGTACAAGCCGGACATGGAGGCGATG
GCGCAGGTGAAGGAGATGATCTACCGCGCGGCGGCCATGCGGCCGGTGAACCTCGTCACGGAGCCCCCCGCGGCGGGCAG
CAGCAAGCCACGGCGCAAGAACGTGCGCATCTCGAGCGACCCGCAGACGGTGGCGGCCCGTCTCCGGCGGGAGCGCGTGA
GCGACCGCCTCCGCGTGCTGCAGAAGCTCGTCCCCGGCGGTAGCAAGATGGACACGGCGTCCATGCTGGACGAGGCCGCC
AGCTACCTCAAGTTCCTCAAGTCCCAGGTGCAGGCGCTGGAAACCCTAGGAACGACG---AGCAGCACCGGCGCCAGCGC
CGCCGCGGCCGCCAGCACGGGCAGGTTACAGTTACACTCACAGCTGCATTATTACAGCAACAACCCTGGGTTTCTCGGAT
TTGCGAGAAATAACAACAACATTTCTTCCGCCTTCAGAAATCCTAATGGAAATTCTGCCAGACTGTTGTAGTACTGTTCA
GTGTCGTCTATACATGTTGCTGTTTCGTACTGTTTCAGGTCGC---CGTGTCAAGACTACGAACGTGGTTAAGTAGTACA
GTACTGTATAC--ATATATATACTAATTAAGGTTTAGTGTCGTC------------------------------------
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--
>chr3D_1_TraesCS3D01G252700
AAGTAAGCTAGGTTGCTAGACCGGCCGGCTTGCTCTCGATCAGGTCCAAAGCCATCGATTGATCAATCATCTGCTCTGTT
GCCATTAGAGTGGTCTACTCCTCTCTGCAAGACGCAGGTAGGTCTACATCTATCTATCCACAGTGTCTAGTACTTCAAAT
CTCCGGCTGCATCTTCTCCTCCTCCTTTTCATGCATGGTAGCTTGCTTGGTTGGGTACGGTCTATGAAGAAATTTGCTTC
TTGCTGGCTCGAGGTCTCAGGCTCTTTCTTGGCTTATTCCAGGTCGATCGAACCCGCTGCGCGTCTCTCGGCCTTGCTCG
CCGGCGTTTCTTGATGACGTGCTAGCTCCCTGCCCAAGGAGTTGCCGGCC----TTGGAATTGGATCGGTCTTTCAAGCT
GTGCTCCACCATCGGCGGCGAAGTTAGCTGGTGCCTCCCATTGTTGTTCCATCCAGCCATCTGGTTTCATCTCACAGGTA
TGGCGAGCTGCAAAGAATCTATACGCATACTGACTAGCACATA-TAGTTAGAGAATGCGGTTTTATGCATGCACACTTAA
TCAGGCTGCTTAGTACTAGTACA------------GTACCAGATAGTCCTATATATTACAGCAAAATATTTGAGGCCGGC
GGGGTGTAATAACCTACT--------TTTCACATAAAGAGACATGTGCATGGCAAGTCGA----GTAG------------
---------------------------------GATTCTTGAGATTGGTAGTAAGTCGTAGAGTATAGCAGATGGCGGTG
TAATTATAGGGTTCGAGACATCTCCGGTTTCTCTCCCCCGGCCGGCCGTCCTTGTCCGCCCATCAATACCTCGCCCGCGT
GACACTGCTCCCTGACGTTCACGTTTCCACCCCGGCCGCGGCCCACC--CCCCTCCACTCCATGCCTCAATTTTGATTCC
CTCCTCCTCGATCGTATTCGTGTCATTCATAGTATC-ACT----CTATTTACAGCCGAGAATAATATATGCTAACGCTTT
CACTCTCT--GT--TACGTGCAGCCGTCCCAGAATCCCTGCGCCAGTCGCTGCCTAGTTAATTAGCTTCTCCCGGCG---
---------GCGGCGATGGACACCTTCGGCTGGTCCGGCCCCGGCCTGCACGACGACGCCTACCTGCCCCGTCCTGTCAG
CCAGCTGAGCTGCGGCCGGTTCGACCTGGACGACGCCTTCCTCGGCCAGCTCCAGTGCGACTTCGGCGGAGGAGGCCAGG
TGAGCTCGAGCTACGGTGCTGCCGTCGGAGGCGCAGCGG---------TTAATAACGGCCCGCTGGGATTCTTTGGCTCG
GGGGTCGACGTGTTCTCGTCCGTCGTCGACGGCGCCAGCGCGCACGACGGCCTGCTCGACTCGGCGCTCGCCTTCTCCAG
CGTGCTCCCGTGCGGCGGGGAGGGTGACCCCGGGGCCGTCTCCAACGGCGCCATGTTCTCCGGCTACAGCGGCACCACCG
TCTGTAACATCTCCTCCGGGGAGTCCAACAACTACAGCGGCGGTGGCGGCGGCCACGACGTAACCGAGGTGGCGTCGCCG
ACGTCCACCATATCGCCCACCACGACGTCGCACCCCACGATTACGTCG---GCACAGCAGGTGCTCCACGTGAGCCGGAA
GCTACCCGCCGACGACTGCCCCGCGGCAGCAACGGTGCCGCCGCTCCCACGGGCCGGCACAAAGCGGAAGTCCCCCACCA
CGACAGCGACGAGCATCACGTTCGGCCAGGACACCAACACCGGAGCGGCCGGCGGGTACAAGCCGGACATGGAGGCGATG
GCGCAGGTGAAGGAGATGATCTACCGCGCGGCGGCCATGCGGCCGGTGAACCTCGTCACGGAGCCCCCCGCGGCGGGCAG
CAGCAAGCCACGGCGCAAGAACGTGCGCATCTCGAGCGACCCGCAGACGGTGGCGGCCCGTCTCCGGCGGGAGCGCGTGA
GCGACCGCCTCCGCGTGCTGCAGAAGCTCGTCCCCGGCGGTAGCAAGATGGACACGGCGTCCATGCTGGACGAGGCCGCC
AGCTACCTCAAGTTCCTCAAGTCCCAGGTGCAGGCGCTGGAAACCCTAGGAACGACG---AGCAGCACCGGCGCCAGCGC
CGCCGCGGCCGCCAGCACGGGCAGGTTACAGTTACACTCACAGCTGCATTATTACAGCAACAACCCTGGGTTTCTCGGAT
TTGCGAGAAATAACAACAACATTTCTTCCGCCTTCAGAAATCCTAATGGAAATTCTGCCAGACTGTTGTAGTACTGTTCA
GTGTCGTCTATACATGTTGCTGTTTCGTACTGTTTCAGGTCGC---CGTGTCAAGACTACGAACGTGGTTAAGTAGTACA
GTACTGTATAC--ATATATATACTAATTAAGGTTTAGTGTCGTCGTGTACTTTTGTCAAGAATTAATTAATTTGGATCGG
TCCGCTGCATCGTGGAAGCGATTCAGGTGCAGCGTGAGATCGAGACCGTGCCGGTGGCAGGACATCATTTA-TGTATTGG
ATGGAGAAGAAAAGGAAGAAATATATGAA-ACTATTGAGATATCCATTTTTTTTTGCGGGGTTTGAGATATTCATTTGTG
TTCTACTAAGTGGCTGGGACACCCCCCCGCAAAAAAA-------------------------------------------
------------------------------------------------------AAAGTGCCTGGGACACGACCGGCGTG
GGGTGCATGTAAAATC------GTAGTGAGAGCCTCTCTTCCATGATTATATACTA------------------------
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----TAAAATAGCATAGGAAGTTACTTTGAATGGTATAATCGGTGTAATTATGTAATTAAACCTTACATGCATGGATCAT
CTGTTTGCCGCACATGCATGCATGCATGCCGTCACTCACACAATGACTAAGCTAGCATAGGTACAAATGTGTGGATCATA
CGTAT-------------------------------ATCTTATAGTAGCATAGGAGGTTAGTTTAGAATG---------G
TAAC--TATGTAAAGCGTTTATACTGCATGCATGCGTGCATGATGATTTCTTCCGCTCAATCATGGTCCGATTGCTTGCT
GCACATGCATGCATGACGTCAGTTGCAGAGCTACCATAGCTGCAAATGTGAATCATTGGGTGCATGGATGAGGTGTCCCA
AAATGGCAAACTTGCGTGGTGGTGCATTGGTCGGTCTCCATATCCGCATATCTTTTGTTCCAGTTCCGGGATGATTAACC
A---GTCTTCTTCTCCTTTTGCACCCCACAAATGCAACGAATCCAGGTGCGAGTGCAAAAAGG----AGCTAGGTGAGGC
GAGGAAGATATGTAGCTAGATATGTAA-----------------------------------------------------
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-------------------------------------------------------------------------------A
GAAAGGCTAAGCCTTCTTTTCCCTATCAAAGATGGATG----ATCTAGATGCTACACCTATGATCTATCTCCATATCTAA
TGCAGTAGCTATGAATATATGTAGTATATATCCTATATCCCGTGTCTTTTTATCTTATCTGCACAGCGCGTGTAATGCTG
GC
>chr3A_2
-AGTAAGCTAGGTTGCTAGACCGGCCGGCTTG--CTCGATCAGGTCCAAAGCCATCGATTGATCAATCATCTGCTCTGTT
GCCATTAGAGTGGTCTACTCCTCTCTGCAGGACACAGGTAGGTCTACATCTATCTACCCACAGTGTCTAGTACTTCAAAT
CTCCGGCTACATCTTCTCCTCCTCCTCCTTTT-CATGGTAGCTTGCTTGGTTGGGTCTATGC-ATGAAGAAATTTTCTTC
TTGTTGGCTCGAGGTCTCAGGCTCTTTCTTGGCTTATTCCAGGTCGATCGAACCCGCTGCGCGTCTCTCGGCCTTGGTCG
CCGGCGTTTCTCGACGGCGTGCTAGCTCCCTGACCAAGGAGTTGCCGGCCGGCCTGGGAATTGGATCAATCTTTCT----
--------CCATC-GCGGCGAAGCTAGCTGGTGCCTCCCATTGTTGTTCCATCCAGTCATCCGGTTTCATCTCAC-GGTA
TGGCGAGTTCCAAAGAATCTATACGCATATTAACTAGCTAGTACTAGTAGCAA-----------ATGCATGCACACTTAA
TCAGGCTGCTTAGTACTACTGAGTAGTAGTACAGTGTACCATAGAGTCCTATATATTACGGCAAAATATTTGAGGCCGGC
GGGGTGTAATAACCTACT--CCTACTTTTCACATAAAGATACATGTGCATGGCAATACGATCGAGTACGATTTTGTAGAT
TATGGACGCATGTTGTGG----TATGTAGAGGCGATTCTTGAGACTGGTAGTAAGTCGTAGAGTAGTGCAGATGGCGGTG
TAATTATGGGGTTCGGGACATCTCCGGTTTCTCTCCCCCGGCCGGCCGTCCTTGTCCGCCCATCAATACCACGCCCGCGT
GACACTGTTCCCTGACGTTCACGTTTCCACCCCGGCCGCGGCCCACC--CCCCTCCACTCCATGCCTCAATTTTGATTCC
CTCCTCCTCGATCGTAATCTCATCATTCATAGTATC-ACTCTGGCTATTTACAGCCGAGAATAATAT--GCTGACGCTTT
CATTCTCTATTATGTACGTGCAGCCGTCCCAGAATCCCTGCGCCAGTCGCTGGA----TAGTTAGCTTCTCCCGGGCGGC
AGCGGCGTTGCGGCGATGGACACCTTCGGCTGGTCCGGCCCCGGCCTGCACGACGACGCCTACCTGCCGCGCCCTGCGAG
CCAGCTCAGCTGCGGCCGGTTCGACCTGGACGACGCCTTCCTCGGCCAGCTCCAGTGCGACTTCGGCGGAGGAGGCCAGG
TGAGCTCGAGCTACGGTGCTGCCGTCGGAGGCGCAGCGGGGGACTCGACTAATAACGGCCCGCTGGGCTTCTTTGGCTCG
GGGGTCGACGTGTTCTCGTCCGTCGTCGACGGTGCCAGCGCGCACGACGGCCTGCTCGACTCGGCGTTCGCCTTCTCCAG
CGTGCTCCCGTGCGGCGGGGAGGGTGACCCCGGGGCCGTCTCCAACGGCGCCATGTTCTCCGGCTACAGCGGCACCACCG
TCTGTAACATCTCCTCCGGGGAGTCCAACAACTACAGCGGCGGCGGCGGCGGCCACGACGTAACCGAGGTCGCGTCGCCG
ACGTCCACCATATCGCCCACCACGACGTCGCACCCCACGATTACGTCG---GCACAGCAAGTGCTCCACGTGAGCCGGAA
GCTACCCGCGGACGACTGCCCCGCGGCAGCAACGAT------------ACACGCCGGCACAAAGCGGAAGGCCCCCACCA
CGACAGCGACGAGCATCACGTTCGGCCAGGACACCAACGCCGGAGCGGCCGGCGGGTACAAGCCGGACATGGAGGCGATG
GCGCAGGTGAAGGAGATGATCTACCGCGCGGCGGCCATGAGGCCAGTGAACCTAGTCACGGAGCCCCCCGCGCAGGGCAG
CAGCAAGCCACGGCGCAAGAACGTGCGCATCTCGAGCGACCCGCAGACGGTGGCGGCCCGTCTCCGGCGGGAGCGCGTGA
GCGACCGCCTCCGCGTGCTGCAGAAGCTCGTCCCGGGCGGGAGCAAGATGGACACGGCGTCCATGCTGGACGAGGCCGCC
AGCTACCTCAAGTTCCTCAAGTCCCAGGTGCAGGCGCTGGAAACCCTAGGAACCACCAGCAGCAGCACCGGCGCCAGCGC
CGCCGCGGCCGCCAGCACGGGCAGGTTACAGTTACACTCACAGCAGCATTATTACAGCAACAACCCTGGGTTTCTCGGAT
TTGCGAGAAATAACAACAACATTTCTTCCGTCTTCAGAAATCCCAATGGAAATTCTGCCAGACTGTTGTAGTACTGTTCA
GTGTCGTCTATACATGTTGCTGTTTCGTACTGTTTCAGGTCGC---CGTGTCAAGACTACGTACGTGGTTAAGTAGTGCA
GTACTGTATAC--ATATATATACTAATTAAGGTTTAGTGTCGTCGTGTACTTTTGTCCAGGATTAATTAATTTGGATCGA
TCCGCTGCATCGTGGAAGCAATTCAGCTGCAGCGTGAGATCGAGACCGTGCCGGTGGCAGGACATCATTATGT-------
---------AAAAGGAAGAAAAATATGAA-ACTATTGAGATATTCATTTGTATATTCTACTGG-----------------
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-----------------------------------------------TAGAATCAAAGTGCCTGGGACACGACCGGCGTG
GCGTGCATGCAAAATCGTACTAGTAGTGAGAGGTTCTCTTCCAAGAGTTAGGGCATGTAGAATGGTTGATAAAATAATTT
TATTTTAAATCTTGCAATTTAGAAATGACAAAAAATATGTCTATAATGGGTCATCTTTTAGCATTATCTTCAATAACTAG
CTATTTTTAAAAACGTGATGAGACAAATTGTGCTAAGAGATGATCTCTTGTCTTTTCTTAAATAAGAGAAGACAATTTTT
TTTTATGATTTCTCTCTTCTTCACCTCATCATTTATCCTACATGGCATTCGTAAGATAAAACCATTGTACATGCCCTTAT
ATCCTAAAATAGTACATAT------------------------------------ACTAAACCCTACATGCATGGATCGT
TTGTTTGCTGCACATGCATGCATGCGTCATGATACTCACACAATGGTTGAGCTAGCATACGTACTAAATACTTATCTTAA
AAATGATTGTATCTAGTATTTCTGAACGGATCATGGATATTATAATAGCATAGGAGGTTAGTTTAGAATGGTGATGGGTG
TAAC--TATGTAAAGCGTTTATACTGCATGCATG--------ATGATTTCTTCCGCTCAATCATCGTCCGATTGCTTGCT
ACACATGCATGCATGACGTCAGTTGCAGAGCTACCATAGCTGCAAATGTGAATCATTGGGTACATGGATGAGGTCCCA-A
ACATGGCAAACTTGCGTGGCGGTGCATTGGTCGGCCTCCGACTCTCCGTATCTTTTGTTCCAGTTCCGGGATGATTAACC
AGCAGTCTTCTTCTCCTTTTGCACCCCACAAATGCAGCGACTCCAGGTGCGAGTGCAAAAAGGAGATAGCTAGGTGAGGC
GAGGAAGATATGTAGCTAGATATGTAAGGGCATGTACAATGGGGGCAGCATCATGTCCGACCTCAGTATCCACGCAGGGC
CGGTCCTGAGTTTTTGGGGGCCCGGGGCGAACCTAAAACTCGGGGCCCTTAATATACACATCATAGTAACATCAATGAAT
ATACTTATATATAGCGTTACAAATAACATTTAACATTTAAATGCATCCAAAATCAGTATGATTATCCAGTAATTTATACT
CTGAAATTACCTTAAAAAAATCTTCTAACACTCCTTGATGCAAAGTCACTTATGATGGGGTCGATGTCAATCTCATCCAT
TAATTTCTTCTCCATGCATAATGTAGCCAAACCATTTAATCTCTCTTGAGTTATTGTTGATCTCAAATAATTCTTCAATT
ATTTCAACTTCGAAAAGCTTTTTTTGGCCGATGTGGCCGTCACAGGGACAGTAAATAAGATGCAATAAGCAGATATATTG
GTATAACTTCGAAAAGCTTCTTTCGGCCGATGAGTACTTCTCTCATATGCCCGAAAATTTCATCAACAGTAGCAAATTGT
GCCTATGCATCTGATGAATTACCGAGCAACTTACTTTGTTCTCGCTGATGTTGGTCTCGACATTTTCTTCTTCCGAATTC
CCATTAGTCTGTTGCTCTTCCCGAATGGCAACGATCACCTACTAGTCATCTGGGTTTATCAAAGCAGTGGAAGCACCAAT
ATCACTCTTCTTGAAAAAATTGTGAATATGTGTGCGCTCTGATTGTATCAATTTATCCACTTCCTTCTTCCTTTTTCTTT
TATGGCTACCAGATGAATTTGTCCAGTTGCTAGACGACATGATTAACACACACAATGCTGAAAACAAAGCAGTTTGTTGC
ATCAATGATCAATCGTTGAACGGTGCCGGCTATGCAACCATAGAATTTATTGTATCAACATTATATGAATATATACCTCG
GTTCCTGAATCCTGACGATCGAACTTTAGTGCGTTTGCCTATAAAGCACGGCAGCAGTGTAGCGCTTGGAGTCTGCAGAG
GATTGAGAGAAGATCAACTGAGCAAAGGCCAAAGGGGCGTGATGATGGATCCCCAGAATTGAAATCTGCCGCGTACATAA
CCGGATTATTAAGGAAATTACCAGGGGACGACTGAGAGGCTGGAATACATGTACGGCATCGAGCGTCGGCGGCCTAGGGC
TGCGTCTGCGTGATGGAACAGAATAGGAAGGGAACCGTCAGAATCGGATCAATCGCTGATCCTTTTTTCACGCGATCCCT
CTCCTTTTTTATGTGAACGAACCGCTGGCTGCCTCGCTCGCTAGCTTTTTCGAGGAAATAAATCGATCGATCGACCTGCT
GCTCCCTACGCGCGTCTGCAGCATGGGCCATAGGGGGCCCCTGAATTTTGGGGGCCCGGGGCGGCCGCCCCCCCTGCCCC
TCCCCAGGGCCGGCCCTGTATCCACGTCGGAGTAAATATATGAAGCATCAGTTCCAATAACTAGCGTGGTCCATCTTGTA
CTCTCTCTCTCTTTATCATCATCTTCTTCCTTTAAATCAATGGCTGCGCATGTCCTGGTGCTTTACTCCTTGCTTTTGCT
TCTTCTCTCTCCCTTTCCTCTTCTTTTTGGCTGAAGCACCAGACTCCTCTGCAAGAGACCGCTAGCCTCTGCAAGCAGCA
CTCTTTTTCTCTCTCTCGTCATGCATCCGACGTGAAACGGCGGGGCAGCACTCCAGCTGGAGCATTGGCCATGCCCTAAA
GAAAGGCTAAGCCTTCTTTTCCCTATCAAAGATGGATGGATGATCTAGATGCTACACCTATGATCTATCTCCATATCTAA
TGCAGTAGCTATGAATATATGTAGTATATATCCTATATCCCGTGTCTTTTTATCTTATCTGCA----GCGTGTAATGCTG
GC
>chr3B_6
-----AGCTAGGTTGCTAGACCGGCCGGCTTG--CTCGATCAGGTCCAAAGCCATCGATTGATCAATCATCTGCTCTGTT
GCCATTAGAGTGGTCTACTCCTCTCTGCAAGACACAGGTAGGTCTGCATCTATCTATCCACAGTGTCTAGTACTTCAAAT
CTCCGGCTACATCTTCTCCTCCTCCTCCCTTT-CATGGTAGCTTGCTTGGTTGGGTATGGTCTATGAAGAAATTTGCTTC
TTGCGGGCTCGAGGTCTCAGGCTCTTTCTTGGCTTATTCCAGGTCGATCGAAC--------CGTCTCTCGGCCTTGGTCG
CCGGCGTTTCTTGACGGCGTGCTAACTCCCTGACCAAGGAGTTGCCGGCC----TGGGAATTGGATCAATCTTTCT----
--------CCATCGGCGGCGAAGCTAGCTGGTGCCTCCCATTGTTGTTCCATCCAGTCATCCGGTTTCATCTCAGAGGTA
TGGCGAGCTCCAAAGAATCTATACGCATATTAACTAGTACTAG-TAGTAGCAA-----------ATGCATGCACACTTAA
TCAGGCTGCTTAGTAGTG------AGTAGTACAGTGTGTCATATAGTCCTATATATTACAGCAAAATATTTGAGGCCGGC
TGGTTGTAAACTTGTAATAACCTACTTTTCACATAAAGATACAAGTGCATGGCAATACGA----GTAGGATTTTGTAGAA
TGGCACGCATGTGTGGTAGTACTATGTAGAGGTGATTCTTGAGATTGGTAGTAAGTCGTAGAGTAGTGCAGATGGCGGTG
TAATTATGGGGTTCGAGACATCTCCGGTTTCTCTCCCCCGGCCGGCCGTCCTTGTCCGCCCATCAATACCTCGCCCGCGT
GACACTGCTCCCTGACGTTCACGTTTCCACCCCGGCCGCGGCCCACACACCCCTCCACTCCATGCCTCAATTTTGATTCC
CTCCTCCTCGATCGTATTCGTGTCATTCATAGGTAGTACT----CTATTTACGGCCGAGAACAATAT--GCTAACGCTTT
CACACTCTCTGT--TACGTGCAGCCGTCCCAGAATCCCTGCGCCAGTCGCTGCC----TAGTTAGCTTCTCCCGGCG---
---------GCGGCGATGGTCACCTTCGGTTGGTCCGGCCCCGGCCTGCACGACGACGCCTATCTGCCGCGTCCTGTCAA
CCAGCTGAGCTGCGGCCGGTTCGACCTGGACGACGCCTTCCTCCGCCAGCTCCAGTGCGACTTCGGCGGAGGAGGCCAGG
TGAGCTCGAGCTACGGTGCTGCAGTCGGAGGCGCAGCGG---------CTAATAACGGCGCGCTGGGATTCTTTGGCTCG
GAGGTCGACGTGTTCTCGTCCGTCGTCGACGGCGCCAGCGCGCACTACGGCCTGCTCGACTCGGCGCTCGCCTTCTCCCG
GGTGCTCCCGTGCGGCGGGGAGGGTGACCCCGGGGCCGTCTCCAACGGCGCCATGTTCTCCGGCTACAGCGGCACCACCG
TCTGTAATATCTCCTCCGGGGAGTCCAACAACTACAGCAGCGGTGGCGGCGGCCACGACGTAACCGAGGTGGCGTCGCCG
ACGTCCACCATATCGCCCACCACGACGTCGCATCCCACGATTACGTCGTCGGCACAGCAGGCGCTCCACGCGAACCGGAA
GCTACCCGCCGACGACTGCGCCGCC---------------CCGCTCCCACACGCCGGCACAAAGCGCAAGGCCCCCACCA
CGACAGCGACGAGCATCACGTTCGGCCAGGACACCAACGCCGGAGCGGCCGGCGAGTACAAGCCGGACATGGAGGCCATG
GCGCAGGTGAAGGAGATGATCTACCGCGCGGCGGCCATGCGGCCAGTGAACCTCGTCACGGAGCCCACCGCGGCGGGCAG
CATCAAGCCACGGCGCAAAAACGTGCGTATCTCGAGCGATCCGCAGACGGTGGCGGCCCGTCTCCGGCGGGAGCGCGTGA
GTGACCGCCTCCGCGTGCTGCAGAAGCTCGTCCCTGGTGGGAGCAAGATGGACACGGCGTCCATGCTGGACGAGGCCGCC
AGCTACCTCAAGTTCCTCAAGTCCCAGGTCCAGGCGCTGGAAACCCTAGGAACGACG---AGCAGCACCGGCGCCAGCGC
CGCTGCGGTCGCCAGCACGGGCAGG------TTACACTCACAGCAGCATTATTACAGCAACAACCCTGGGTTTCTCGGAT
TTGCGAGAAATAACAACAACATTTCTTCCGTCTTCAGAAATCCCAATGGAAATTCTGCCAGACTGTTGTAGTACTGTTCA
GTGGCGTCTATACATGTTGCTGTTTCGTACTATCTGAGGTCGTCGTCGTGTCAAGACTACGTACGTGGTTAAGTAGTGCA
GTACTGTATAGATATATATATACTAATTAAGGTTTAGTGTCGTCGTGTACTTTTGTCCAG----AATTAATTTGGATCGG
TCCGCTGCAA----------------------CGTGAGATCGAGACCGTGCCGGTGGCAGGACATCATTATGTGTATTGG
ATGGAGGAGAAAAGGATGAAATCTATGAATACTATTGAGATATTCATTTGTATTCTACTCACTTCGTTTCTAAATATAAG
TCTTTTTAGACATTTTAATATGAACTATATATGTATGTATATAGATATATTTTAGAATGTTGATTTACTCATTTGCTCCG
TATGTAGTTCATATTAAAATACTTATATTTAGGGATGGAGGAAGTATTAGAATCAAAGTGCCTGGGACACGACCGGCGTG
GCGTGCATGTAAAATC------GTAGTGAGAGCCTCCCTTCCATGAGTC-------------------------------
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------------------------------------------------------------------------------AT
ATCCTAAAATAGCATAGGAAGTTACTTTGAATATTATAATCGGTGTAATTATGTAACTAAACCTTACGTGCATGGATCAT
CTGTTTGCCGCACATGCATGA---CATGCCGTCACTCACACAATGGCTGAGCTAGCATAGGTACAAATGTGTGCATCATA
TAG-T-------------------------------ATCTTATAATAGCATAGGAGGTTATTTTAGAATGGTAATGACTG
TAACTATATGTAAAGCGTTTATACTGCATGCATGCATGCATGATGATTTCTTCCGCTCAATCAGGGTCCGATTGCT----
GCACATGCATGCATGACGTCAGTTGCAGAGCTACCATAGCTGTAAATGTGAATCATTGGGTACATGGATGAGCTCCCA-A
ACATGGCAAACTTGCGTGGATGTGCATTGGTCGGTCTCCATA-CCGCATATCTTTTGTTCCAGTTCCGGAATGATTAACC
AGCAGTCTTCTTCTCCTTTTGCACCCCACAAATGCAACGAATCCAGGTGCGAGTGCAAAAAGGAG----CTAGGGGAGGT
GAGGAAGATATATAGCTAGATATGTAA-----------------------------------------------------
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-------------------------------------------------------------------------------A
GAAAGGCTAAGCCTT--TTTCCCTACCAAAAATGGATGG----TCTAGATGCTACACCTATGACCTATCTCCATATCTAA
TCCAGTAGCTATGAATATATGTAGTATATATCCTATAT------------------------------------------
--
>SNPs
S-------------------------------SS----------------------------------------------
---------------------------------S----------------------------------------------
--------S-----------------SS-SS-S------------------------S----------------------
----------------------------------------------------------------------------S---
--------------S-S---------------S----------------------S-----------SS------SSSSS
SSSSSSSS---------------S--------------------------------S----S------------------
---------S-------------------S-S--------S-------SSS-SSSSSSSSSSSS----------------
------------------S-SSS------------------S--------------------------------------
---------------------------------------S---------------SS-----------------------
-----------------------------------------------------------------SS-------------
-------S------------------------------------------------------------------------
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-------------------------------------------------------------------SS-----------
------------------------------------------------------SSSS--S-------------------
--------------------------------------------------------------------S-----------
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------------------------------------------------S-------------------------------
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----------------------------------S-SSSS----------SS------------------S---------
--------------------------------------S-----------------------------------------
--------------------------------------------S-----------------------------------
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----------------------------------S-----S---------------------------------------
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--------------------------------------------S-----------------------------------
------------------------------S------------S------------------------------------
-------------------------------------------------------------S---------------S--
---------------------------------------------------------S--S-------------------
-------------------S------S------------------------------------------SS---------
------S------------------------------------S-----S-S---S-SSSSS--SSSS-S-SS--S-SS-
-SS-SS--SSSSSS-SSSSSSSSS-SSSSS-SSS-SS-------------------------------------------
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-S--------------------------------------------S-SSSSS-SS------------------------
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--------------------------------SS----------------------S-----------------------
---------------------------------------------S--S------------------------S------
SSSS----------------------------------------S-----------------------------------
-----------------------------------S--------------------------------------------
-------------------------------------------------------------S------------SS-SS-
-S-----------------S------------------------------------------------------------
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---------------------------------------------------------------SSSS-------------
--
>forward_405
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-----------------------------------------------------------------TCGGTCTTTCAAGCT
GTGCT---------------------------------------------------------------------------
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>reverse_2500
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-------------------GATTCAGGTGCAGCGTGAGA-----------------------------------------
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--
