>input_sequence_54389
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-------------------ATCCTCTTGAAACA--TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTTTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCCATTTCAAGCGAGCCTTCATATATAGAATTAGTACGTGGAGGA
TTAACTGCAGAGACAATCAGAGAGAGAGAGAGAGGAGCATAATGTCGAGGGAGCGCAAGAAGGCAGCTGC---TCTACAG
GAGAAGATGCAGATTCTGCGGTCCATCACTCACTCCCACGCGGTAACCAACGCCTCTTTTCGCTGCCCTTGGTGGTGATC
TTATGCTGCCATTAATTAGCTTGATGTCTGTTTTTAAATCTAAAATCGCGGTGCAGCTGAGCAATCCATCCATAGTCATG
GACGCGTCGGAGTACATCAAGGGGCTGAAGCAGAAGATCGCGAGGCTCAATCAGGAGATCGCACGCGAGGAAGGCACGCA
CTCGCACAAGCAGAACTCTTTCCCCACGGTA----CGCGCACACACCTATCACCGCACTGTGTATGTATACTGTATACAG
GACCTGAATTATCCAGTTCTGAAGCTTAGGTTATGTACTATGAACGGGAGAGCACTGTGGCACATAGTAATACAGTGGGG
TATGATGTAAGATTAATGATTT--AATCAATTATTGCGTGCGTCTGCACTGCACTTGTGCAGGTGAGCGTGGAAGCCCTA
GGGCATGGGTTCCTCGTGAACGTGTCTTCCGACAAGAGCTGCCCCGGGTTGCTCGTCGCCGTGCTAGAGGCATTCGAGGA
GCTGGGCCTCACCGTGCTCCAGGCCACGGCGTCTTGCGCCGATACGTTCCGCCTAGAGGCCGTGGGGGGAGGAGAG----
----GTACGTACATACATACCCCTACGCGACAATGTCTC--CTCAATCATTAACTGATCCCCGATCGAACAGAACTGTAA
AGCAGACCAACCTGTTCTATCGACCTCTGCTGCCCATATATAGTCTGAACCATAAACCTACAATTATCTCATCAATAATT
TGAGTTGATGGTGTCGCGACTAGCAACACCG--CACGACCGACTGATGGACCGATTGTGAATATCTGTGCTGATGCTCGG
TTATTTTTGTATTAATATGATGTTGCAGAACCAGGCGGGGAGTGTGGATGAGGATGTCATCAGGCGGGCGGTGCAGCAGG
CCATCACCAACTGCGGCGCGGAGCAAGGGGATCAGTAGCTAGCTGCTT-ACGTGCCCCCCGCATTTTCTTCTCGATCGAC
CCGCCC-----TTTGCATAGTTTCATGGCTCTTCTCTCGATCTACCGGATGAGCTCCGATGATATATACATCCAGCTCAA
TCTCTAGCAATTCAA-----------------------------------------------------------------
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------------------------
>chr2B_1_TraesCS2B01G126400
GTAAGTGGTGGGTGCGGTTTCACCGCCACCCATCCCGAGGGATCAAACCCTAGATTTGACATTACTT-------------
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-------------------------------------------------------------------------------T
TGTGGAGAGGAAACGAAAAATGCTGCAGAAGTATCCATGAATGAATTGAATTCAAGCCACACACTTGGGCTTGATGACAT
TTGAATGACTATGCCCTATAATCAAACGAGATAAGTCGAGATGATGGATCAGGAGGAGG------------------AGG
TTGAGGAGATCGATGAGAGTCAAGCAAAGAGGAAGAGAGTACATGTG-ACTATATGATCTCTATGTTTGTGATATGATGC
CTTTAAATTATCCATGTTTGTGTTGAA--ATATGATCAATTTGTTCAAATAG-----------------TTCAAAGTTTG
TGAAACCAAAATGTATAAGATAGGGGATCTGCTAGCTGCTTTGGTACTTTAGTATAGAGGATCCTCCATACTAAATAAAG
TACCATATTAAAGTAGGATAGAAAGCTGTTTTGGTACTTTTAGTATAGAGGATCGGCTAGAGATGCCCTTAAACAGCATT
CGATGAAGGCACATGCACTACAAATTAGTTTAGCTAGGGAATGAATTAACTTTCCTCCAAAACATGCCTTGTTGCGCGAC
TATCATATTGCTGCAGCGACGCCAATGATTTACAGGGGCGTAGCTGAGGGTGGAAAGGGTGTCC------CATGGTCGAC
CACCCTGGAATTTTCAGAAATGATATTGTTTTCTAAACCGGTGCATCTC-AAAAACTGTTGTATACATGCATCCGCATGC
AAGAA--ACACACACAGTGGGCACTGGGTGGGCAGCAACTGACGGTACACTTTACATTTCTCGGCGGCATATATGCATGG
AAAGGAAAGAAGAGCCGGAGGAAGAGCCAAACCGAGTTTTGAACCTACTACCTAGAATCGAATCTCTCCTCGTCATCCCA
TCTTCCATTCAATTCCCTGAACCGCAATAAGGTCACGTGAGCGGCCACCTCCGGCGATCACTATATAAAGACGTGTGCGC
CCGGAGCTTCTTCATCCTCATCCTCTTGAAACA--TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTTTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCCATTTCAAGCGAGCCTTCATATATAGAATTAGTACGTGGAGGA
TTAACTGCAGAGACAATCAGAGAGAGAGAGAGAGGAGCATAATGTCGAGGGAGCGCAAGAAGGCAGCTGC---TCTACAG
GAGAAGATGCAGATTCTGCGGTCCATCACTCACTCCCACGCGGTAACCAACGCCTCTTTTCGCTGCCCTTGGTGGTGATC
TTATGCTGCCATTAATTAGCTTGATGTCTGTTTTTAAATCTAAAATCGCGGTGCAGCTGAGCAATCCATCCATAGTCATG
GACGCGTCGGAGTACATCAAGGGGCTGAAGCAGAAGATCGCGAGGCTCAATCAGGAGATCGCACGCGAGGAAGGCACGCA
CTCGCACAAGCAGAACTCTTTCCCCACGGTA----CGCGCACACACCTATCACCGCACTGTGTATGTATACTGTATACAG
GACCTGAATTATCCAGTTCTGAAGCTTAGGTTATGTACTATGAACGGGAGAGCACTGTGGCACATAGTAATACAGTGGGG
TATGATGTAAGATTAATGATTT--AATCAATTATTGCGTGCGTCTGCACTGCACTTGTGCAGGTGAGCGTGGAAGCCCTA
GGGCATGGGTTCCTCGTGAACGTGTCTTCCGACAAGAGCTGCCCCGGGTTGCTCGTCGCCGTGCTAGAGGCATTCGAGGA
GCTGGGCCTCACCGTGCTCCAGGCCACGGCGTCTTGCGCCGATACGTTCCGCCTAGAGGCCGTGGGGGGAGGAGAG----
----GTACGTACATACATACCCCTACGCGACAATGTCTC--CTCAATCATTAACTGATCCCCGATCGAACAGAACTGTAA
AGCAGACCAACCTGTTCTATCGACCTCTGCTGCCCATATATAGTCTGAACCATAAACCTACAATTATCTCATCAATAATT
TGAGTTGATGGTGTCGCGACTAGCAACACCG--CACGACCGACTGATGGACCGATTGTGAATATCTGTGCTGATGCTCGG
TTATTTTTGTATTAATATGATGTTGCAGAACCAGGCGGGGAGTGTGGATGAGGATGTCATCAGGCGGGCGGTGCAGCAGG
CCATCACCAACTGCGGCGCGGAGCAAGGGGATCAGTAGCTAGCTGCTT-ACGTGCCCCCCGCATTTTCTTCTCGATCGAC
CCGCCC-----TTTGCATAGTTTCATGGCTCTTCTCTCGATCTACCGGATGAGCTCCGATGATATATACATCCAGCTCAA
TCTCTAGCAATTCAACTTGTACTATCTGTTGATGAGTGATGATGATGATGGTAATTCTATGGAATTTGTAGGTAGTCTGG
AGGTCGAAAGTTATTGTCTGTTACACCGTTTGTGTAGAATTTGCATGTGAGATGGCAGGA------------CCATCCTC
CCTGCTGCACCCCTTTAGGTTTTAGACCAACATATCCTCTGCATTTTCAGCTGTTCATACTACTCTGTAATATGATGCTA
TCTC---------------------CGTTTTGGTAGTTTAAATTGAACTGCAAAAGCGTCTTACAATAGTGGACAGAGGG
CGTACTAT--CCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCATATTGACATGTTGCT----------------------------------------------------CA
TATGAGAAAACAAAGGAAATATCAGTAGTATGAGTTACTCATGTGGCATGTTGCTCATACGATATAGTTCTTTTTTTTCA
TGGGCGGTTTTGCCTTATCCACACGCGTGACAACAGAGCGAGACACATCTCCTAGTTTGGTTAGAACGTTGCATACTACC
GGAGAAGTCA------------------------------------------TGTTGTTAGTGGACTATTACAACATGGA
CCCTATAAAAGGAGACATCCCCTTCGATGAGAGAATTCAACTCAACAATATCCACACTCCAATCTCTACGTACTATTGTT
TTCGCCACCAATTGCCTCAAAACG
>chr2D_1
GTAACTAGTGGG-TCGGTTCCACTTCAACCCCTTCTGAGCGATCAAACCCTAGATTTGACATTACTTTGTCAGTTTCCAT
GCTCCATGATTCTAGTATTTTAGAAGACGGTGTGTTTTTATGTATTATCTACCTTTTTGTGTTTTTATGTATTATCTACC
TTTTTTTCTTCCTTCCATACGACTACCTCATTGGCCGGGTTTTGTTAACAAAACACCCGTGCATGTAAAAGGAAAACAAG
TCTTTAACACACTAGGTGCCGCCTAATGCTAGCACATACGTAACAATAGATGTTTATGGAAATGAAGAGGCAGCAAAAGC
TAATTAATACAACACCTCAGGGCTACACCACCCTTCATCCAAACCGGGGTTAAAATCATAGTTGAATAGCTAGATCCACA
ACAAAAAAGGGCTATCAGAGCGCCGTCAGGTCAACTAGCATTGTCTTTATCATGACGAGCGATAGGAACTTCAATCCTCG
GTATCCCATCATCAGGTTGACCAGCAAAGTGTCCATCTAGCACAAAATTTTGCAAAACATTAGCCCAAGGAACAAGCACC
TCCCACAGTCCCACTCTTGCTCAGACTGTAAACTTAGGGCATCTCTAGCAGATCCCCTAAAACTCAAATTTAAGGAGTAA
AAGTGATATTTGGGCCAAAAAGGGCCAACTACCAGATCACCTAAACTCAAAACTTTACAATATTTGAGTTTTTTGACCCC
GAAAACTTGCCCCCTCTCTAAAATTTAGTCTGCGGCCACTCGGTGGACTGACAGCGCTCTCTCCCGCTCACCCCGCCGCT
ACACCCCCACGACGTCCCCTTCCCCGATGACCGAAGGAATGGATAGGCCGTCCCTCGCCACACCCTTGGACACCGGCGTC
GGCGCCAGAGACCCACTGGCGACCACGAATTCGGCGACACGATCACCAAAAAGGCGGTGGTAGGGGATGCACCTCATCAG
CAGCAAAGCAATGACGACGGTCATCAGTAGTCCCTCTGATGCGACCACCATACCGACCGCGGCGAAGCAGACCGACAAAA
AGGACCGTCAACTGATGGAAAAGGCGGCGGTCAACACAACAACACTCGCAAAGAAAAGTAAGAATGTGGCGGCCTGTTTG
CTTCCCCCTCGACTTGTCGCGGCTCTGGCAAGTGCTACCCCGCCTACTGCAGCCACGTAGGCAACCCCTCAGTCGTCGGT
GGTCGACGACGGGATGGATTCAGATTCTACAAGAAGCGACGATGACATGCTAGATGGAATGCCCCAAATGTATTTTTTCC
TCCTTTTGTTTTGTTGTTTGCATTTTCTTAGTATAGTTATGCATTGTTCGATATTGATTGCTAGATTCTTCCTTTACTTT
TGAAGTGAACAAATGAACAATGATGCCGAAGCTTTCATGAATGAATTGAATTCAAGCCACACACTTGGGCTCGGTGACAT
TGGAATGACTATGCCCTATAACCGAACAAGATAAGCCGGGATGATGGACGAGGAGGATC------------------AGG
TCCAGGAGATCGATGAGAGTCATGCGAAGAGGAAGCCGACGACGGGTAACTACATGATCTCTATGTTTATGATGTGATGC
ATTTAAAATCGCTGTGTTTGTGTTGAAATATATGATCAATTTGTTTGAATAGTTTGAGCAACAG---ATTTCAAAGTTAG
TGAAACCAAAATTTATAGGATAGGGGATCTGCTAGCTGCGGAATAGTGCTTTCCCTAAAAACAA----------------
----ATAGTAAAGTAGGATAGGAAGCTGTTTTGATAATTTTAGTATAGAGGATCG---------GCCCTTAAACAGTATT
GGATGAAGGCACATGCATGACAAATTAGTTTAGCTAGGGAATGAATTAACTTTCCTCCAAGACATGCCTTGTTGCGCGAC
TTTCATATTGCTGCAGCGACGCCAGTGATTTACAGGGGCGTAGCTGAGGGTGGAAAGGGGGTGTCCCATGCATGGTCGAC
CACCCTGGAATTTTCAGAAATGATATTA-TTTTTAAATCGGTGCTTCTCAAAAAACTGTTGTATACATGCATCCGTATGC
AAGAA--ACACACACAGTGGGCACTTGGTGGGCAGCAACTGACGGTACACTTTACATTTCTCGGCGGCATATATGCATGG
AAAGGAAAGAAGAGCCGGAGGAAGAGCCAAACCGTGTTTTGAACCTACTACCTAGAATCGAATCTCTCCTCGTCATCCCA
TCTTCCATTCAATTCCCTGAACCGCAATAAGGTCACGTGAGCGGCCACCTCCGGCGATCACTATATAAAGACGTGTGCGC
CCGGAGCTTCTTCATCCTCATCCCCTTGAAGCAACTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC-----
-------------TCTCTCTCTCTCTCTCTCTCTCTCCATTTGG--------------------ATTAGCACGTGAAGGA
TTAACTGCAGAGACAATCAGAGAG--------AC-GGCATAATGTCGAGGGAGCGCAAGAAGGCAGCTGCC---CTACAG
GAGAAGATGCAGATTCTGCGCTCCATCACTCACTCCCACGCGGTAACCCACGCCTCTTTTCGCTGCCCTTGGT-GTGATC
TTATGCTGCCATTA----GCTTGATGCCTGTTTTTAAATTTAAAATCGCTGTGCAGCTGAGCAATCCTTCCATAGTCATG
GACGCGTCAGAGTACATCAAGGGGCTGAAGCAGAAGATCGCGAGGCTCAATCAGGAGATAGCACGCGAGGAAGACACGCA
CTCGCACAAGCAGAACTCTTTCCCCACGGTATGCGCGCGCACACACCTATCACCGCACTGTGTATGTATACTGTATGGAG
GACCTGAGTTATCCGGTTCTGAAGCTTAGGTTATGTACTATGAACGGGAGAGCACTGTGGCACATAGTAATACAGTGGGA
TATGATGTAAGATTAATGATTT--AATCAATTATTGCGTGCGTCTG-ACTGCACTTGTGCAGGTGAGCGTGGAAGCCCTA
GGGCATGGGTTCCTCGTGAACGTGTCCTCCGACAAGAGCTACCCCGGGTTGCTCGTCGCCGTGCTGGAGGCGTTCGAGGA
GCTGGGCCTCACCGTGCTCCAGGCCACGGCGTCTTGCGCCGATACGTTCCGCCTCGAGGCCGTCGGAGGAG---AGGTAC
GTACATAT------ACATATCCCTACGCGACAATGCCTCCTCTCAATCATTAACTGAACCCCGATCGAACTGAACTGTAA
AGCAGACCAACATGTTCTATCGACCTCTGCTGCCCATATATAGTCTGAACCATAAACCTACAATTATCTCATCAATAATT
C-----GATGATGTCGTGACTAGCGACACGG--TGCGACCGACTGATGGATGGATCGTAATTATCTGTGCTGATGCTGGG
TTGTTTCTGTATCAATATGATGTTGCAGAACCAGGCGGGGAGTGTGGATGAGGATGTCATCAGGCGGGCGGTGCAGCAGG
CCATCACCAACTGCGGCGCGGAGCAAGGGGATCAGTAGCTAGCTGCTT-ACGTG-CCCCCACATATTCTTCTCGATCTGC
CGGCCC----ATTTGCATAGTTTCATGGCTCTTCTCTCGATCTACCGGATGAGCTGCGATGATATATACATCCAGCTCAA
TCTCTAGCAATTCACCTTGTACTATCTGTTGATGAGTGATGATG------GTAATTCTATCGAAATTGCAGGTAGTCCGG
CAAGGTGTTATTTATCA--GTTACACCGTTTGTGTAGAATTTGCATGTGAGATGGCGAGAAGCTAAGAAGGGCCATCCTC
CCTGCTGCACCCCTTTAGGTTTTAGACCAACATCCCCTTGCG-TTTTCAGCTGTTCATTCTGTTCTGTAATATGATGCTA
TCTCT----ATTCACTGATGTAAGACGTTTTGGCAGTTTAAGTTGAACTGCAAAAATGTCTTACAATAGTGGACAGATGG
TGTATTAT--CCTGCTGCTATGCGGCTTAACGAAAATTTGTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGCCCCTCAAAGACA
TATGAGAAACT-AAGGAAATATTAGTA---TGAGTTACTCATGTGGCATGTTGCTCATACGACATAGTTC-TTTTTCTCA
TGGGCGGTTTTGCCTTATCCACACGCATGACAACAGAGAGAGACACATCTCCTAGTTTGGTTAGAACGTTGCATACCACC
GGAGAAGTCACATGGCACGGTTCCTGAGATTTAGGCAGCTCAAGAATCATGTTGTTATTAGTGGACTGTTACGACATGGA
CCCTATAAAAGGAGACATCCCTTTCGATGAGAGAACTCAACCCAACAA-ATCCATGCCCCAATCTCTA------------
------------------------
>chr2A_1
GTAACTGGTGGG-GCGGTTTCACCGCCACCCATCCCGAGGGATCAAACCCTAGATTTGACATTACTT-------------
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-------------------------------------------------------------------------------C
TGTAGTGAGGAAACAAACAATGATGCTGAAGTTTTCATGAATGAATTGAATTCACGCCACACACTTGGGCTTGATGACAT
TCGAATGACTATGCCCTATAATCAAAAGAGATAAGTCGAGATGATGGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
TCGAGGAGATCGATGAGAGTCAAGCAAAGAGGAAGCGAGTACAT-GTAACTACAAGATCTCTATATTTGTGATGTGATGC
ATTTAAATTCTCTA-GTTTATGTTGAA--ATATGATCAATTTGTTCGAATGTTTGAGCGATACTTAAATTTCAAAGTTTG
CGAAACTAAAATTTATAGGATAGGG-ATCTGCTAGCCGTGGAATAGAGATTTCCCTAAAAACAA----------------
----ATAGTAGAGTGGGATAGGAAGTTGTTTTGGTACTTTTAGTATAGATGATCGGCTAGAGATGCCCTTAAACAGTATT
CGATGAAGGCACATGCATGACAAATTAGTTTAGCTAGGGAATGAATTAACTTTCCTCCAAAACATGCCTTGTTGCGCGAC
TTTCATATTGCTGCAGCGACGCCAATGATTTAC-------------AGGGTGGAAAGGGTGTCC------CATGGTCGAC
CACCCTGGAATTTTCAGAAATGATATTGTTTTTTAAACCGGTGCATCTCAAAAAACTGTTGTATACATGCATCCGCATGC
AAGAAACACACACACAGTGGGCACCGGGTGGGCAGCAACTGACGGTACACTTTACATTTCTCGGCGGCATATATGCATGG
AAAGGAAAGAAGAGCCGGAGGAAGAGCCAAACCGAGTTTTGAACCTACTACCTAGAATCGAATCTCTCCTCGTCATCCCA
TCTTCCATCCAATTCCCTGAACCGCAATAAGGTCACGTGAGCGACCACCTCCGGCGATCACTATATAAAGACGTGTGCGC
CCGGAGCTTCTTCATCCTCATCCCCTTGAAGCAGCTCTCTCTC------------------------TCTCTCTC-----
-------------TCTCTCTCTCTCTCTCTCTCTCTCCATTTGG--------------------ATTAGCACGTGAAGGA
TTAACTGAAGAGACAATCAGAGAG--------AGGGGCATAATGTCAAGGGAGCGCAAGAAGGCAGCAGCTGCTCTACAG
GAGAAGATGCAGATTCTGCGCTCCATCACTCACTCCCACGCGGTAACCCACGCCTCTTTTCGGTGCCCTTGGT-GTGATC
TTATGCTGCCATTA----GCTTGATGTATGTTTTTAAATCTAAAATCGCGGTGCAGCTGAGCAATCCTTCCATAGTCATG
GACGCGTCGGAGTACATCAAGGGGCTGAAGCAGAAGATCGCGAGGCTCAACCAGGAGATCGCACGCGAGGAAGACGCGCA
CTCGCACAAGCAGAACTCTTTCCCCACGGTA----CGCGCACACACCTATCACCGCACTGTGTATGCATACTGTATGGAG
GACCTGAATTATCCGGTTCTGAAGCTTAGGTTATGTACTATGAACGGGAGAGCACTGTGGCACATAGTAATACAGTGGGG
TATGATGTAAGATTAATGATTTATAATCAATTATTGCGTGCGTCTGCACTGCACTTGTGCAGGTGAGCGTGGAAGCCCTA
GGGCATGGGTTCCTCGTGAACGTGTCCTCCGACAAGAGCTGCCCCGGGCTGCTCGTCGCCGTGCTGGAGGCGTTCGAGGA
GCTGGGCCTCACCGTGCTCCAGGCCACGGCGTCCTGCGCCGATACGTTCCGCCTCGAGGCCGTCGGAGGAGGAGAGGTAC
GTACGTACGTACAAACATACCCCTACGCGACAATGCCTC--CTCAATCATGAACTGATCCCCGATCGAACTCAACTGTAA
AGCAGACCAACATGTTCTATCCACCTCTGCTGCCCATATATAGTCTGAACCATAAACCTACAATTATCTCATCAATAATT
C-----GATGGTGTCGTGACTAGCGACACGGCGTGCGACCGACTGATGGATGGATCGTAATTATCTGTGCTGATGCTCGG
TTATTTTTGTCTCGATATGGTGATGCAGAACCAGGCGGCGAGTGTGGATGAGGATGTCATCAGGCGGGCGGTGCAGCACG
CCATCACCAACTGCGGCGCGGAGCAAGGGGATCAGTAGCTAGCTGCTTTACGTG-CCCCCACATATTCTTCTCGATCTGC
CGGCCCGCCCATTTGCATAGTTTCATGGCTCTTCTCTCGATCTACCGGATGAGCTGCGATGATATATACATCCAGCTCAA
TCTCTAGCAATTCACCTTGTACTATCTGTTGATGAGTGATGATG------GTAATTCTATCGAAATTGCAGGTAGTCCGG
CAAGGTGTTATTTATCA--GTTACACCGTTTGTGTAGAATTTGCATGTGAGATGGCGAGAAGCTAAGAAGGGCCATCCTC
CCTGCTGCACCCCTTTAGGTTTTAGACCAACATCTCCTCGCG-TTTTCAGCTGTTCATTCTGTTCTGTAATATGATGCTA
TCTCTATTAATTCACTTATGTAAGACGTTTTGGCAGTTTAAATTGAACTGCAAAAATGTCTTACAATAGTGGACAGAGGG
TGTACTATATCCTGCTGTTATGCGGCTTAATGAAAAGTTGTTACCCCCCACCCCCCCACCCCTCCACCCCCACGCCGCCG
GAACCGGATCCTCTAACAGAAAGAAGGAAAGTCACGGTGCTATAGTGCTAGCCTAGTGTAAAATAAAGAAGGGAAGTTAG
AGACTACTAGTAGGTAGTTAACAGATTGTTTACGTTTGGTATTTACTATATAGATATAAATAATTTAAATTAATTTTGTT
TCACCATCAATTTGTTTGTATCTAATTACTATAAATGTACAGAGTAGATCATCAGTTTGCAAATTAATTTAAATCGTTTT
ATCCATAATCATATGGATAGAAACAGGGAAAGTTAGAGTATTGTAGCTTCTCTAACTTTTTTTCTTAATATTAGAGGATC
CAGTTCCCACGCCGCCACACACACC-----------------------------------------GCCCCTCAAAGACA
TATGAGAAAACAAAGGAAATATTAGTA---TGAGTTACTCATCTGGCTTGTTGCTTGTACGACATAGTTC-TTTTTTTCA
TGGGCGGTTTTGCCTTATCCACACGCATGACAACAGAGAGAGACGCATCTCCTAGGTTGGTTAGAACGTTGCATACCACC
GGAGAAGTA-------ACGGTTCCTGAGATTTAGGCAGCTCAAGAATCATGTTGTTGTTAGTGGACTGTTACAACATGGA
CCCTATAAAAGGAGACATCCCTTTCGATGAGAGAATTCAACTCAACAATATCCACACTCCAGTCTCTACGTACTATTGTT
TTCGCCACCAATTGCCTCAGAACG
>SNPs
----S-------S-------------------------------------------------------------------
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---S-S-----------S----S---S-----S-S---------------------------------------------
-S-----------------------------------------------S------------------------------
-S---------------------------------S---------SS-----S--------------------S------
S--------S--S---------------------------------S---------------------------------
------------S----S---------------------SSSSSSSSSS-SSSSSSS-SS-SSSSSSSSSSSSSSSSSSS
SSSS---S-------------S------------------------------------------------------S---
-----------------SS-------------------------------------------------------------
-S------------------------------------------------------------------------------
--------------------------------S-----------------------------------------------
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-----------------------S------S--------------------------------------------SSSSS
SSSSSSSSSSSSS-----------------------------SSSSSSSSSSSSSSSSSSSSSS-----S-----S----
------------------------SSSSSSSS---S--------------------------------------------
--------------------S---------------------------S------------------------S------
--------------SSSS-------------------------------------------------S------------
-------------------------------------------------------------------------S------
----------------------------------------------------------------------------SS--
--------------S-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------S--------------------------------------S-----S--------
------------------------------------------------------S--------S--S-------------
-------------S---------------------S----------------------------------S---------
-----------S--------------------------------------------------------------------
SSSSSS----------S-------S----S---SS---------------SS---S--S-S-------------------
------------S-------------------------------------------------------------------
------------------------------------------------------S-----S---S------------SS-
-S-----------------------------------------------------S------------------------
--------------S-----------------------------SSSSSS----------S---S---S--------S--
SSSSSSSSSS--SS-SSSS-------------------------------------SS----------------------
---------------------------------S-----SSSS---------------S--SS-----------------
---------------------------------S---------------------SS-----------------------
S-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------
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----------SSSSSS---SSSSS-S------------------------------------------------------
----------------------S----SSS--------------------------------S-------S---------
--------------------------S-----------S-------------------------------------S---
-------------------------------------------------------------------S------------
---------------------S----------------------------------------------------------
-------------------S----
>forward_1859
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-------------------------------------------------------------------------------T
CGATGAAGGCACATGCACT-------------------------------------------------------------
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>reverse_3585
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----------------------------------------------------------------TTTCTTCTCGATCGAC
CCGC----------------------------------------------------------------------------
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>forward_3416
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------------------------------------GACCGACTGATGGACCGATT------------------------
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>reverse_4587
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--------------------------GTGACAACAGAGCGAGACAC----------------------------------
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------------------------
