>input_sequence_54312
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------------------------------------------ATGTCGCTAGCATGTGCCCTCGCCGGCGGCCCAGCCGC
GTTCAAGGACGTCTTCGTCGACAGCCGCCACGACCCGCCGTTGCCCCTGCCGAAGAAAGACCACAGCGGTGGCGACGGCG
ACGGCGACGCCCTCACGAGCAACCCGATGACGGGGCAGCGCCTGTACCAGGGCACCTGGGTGATGGAAGGGTGGATCCCG
GGGATCGTCCAGATTCAAAACGGCGGCGGCTTCACGCCACGTCGTGGCGATGTCATCCTCGCCAGCCCGCCCAAGTGTGG
CACCACGTGGCTCAAGGCGCTCGCCTTCGCCACCATGGCACGCGGGGCGCACCCGCCCGCCGCCCCCGACCACCCGCTCC
TCCGCCACACGCCGCACGACTGCGTCCCGTTCATGGAGGTGATCGTGTCCGGCGGGTGGGGGAGCAAGCTGGACGCGCTG
CCGTCGCCGAGGCTCTTGTCCACGCACATGCCCTACTCTACTCTGCCCGCCTCCATCACCAAGAATCCAGACTGCAAGAT
CGTCTACATCTGCAGGTGCGCGCGTACGCTTGCGTCGCATGATATATTATTGTGTATACTCTA-----------------
---------------------------------------------TCTATATAACTTCAAATCTCTCGTCGATCTGATAC
CTTTTGAAACGTGTTTGGCGTTTCTCTAAGCCTCGAAGGAAAAGGTATCGGACGTCTATTTTGACTACTACTTATTCATT
TGGTTTGGTTATTTCATCATAGTAATACATAACATTAACGTTAGTTATTGATGATGGGTGACTGTTGATACGAACAAAAT
TTACTGATTGTCACTCATGACTCATCAGGGACCCAAAGGACATGGTAGTCTCAATGTGGCACTTCCTTAGGCATCCTCGG
CCAAACCTGTCATTCAACGACATGTTCGAGCTCACCTGCGAGGGCAGATCTCTATGCGGCCCATTCTGGGACCACATCCT
CGGGTACTGGAACGCCGGCAAAACCATGAGTGGCGACGAGGGCCAACCAGAGATGACCTCGGCAGCGGTCCTTTTCCTCA
GGTACGAGGAAATGATAAAAGACCCAGCCAACAATGTACGAAAGCTGGCGCGGTTCGTTGGGCAACCATTCTCCGCTGCC
GAGGAGGAAACCAAGGTTGTGGACGACATTGTGGATCTGTGCAGCTTTGAGAAGCTGAGCAGCCTCAAGGTGAACAAGGC
GGGCCCTGTGGTGTTCACCAAGTATCCTCGTGAATCTTACTTCAGGAGAGGGGGTGTAGGAGACTGGATGAACCATATGA
CACCTGAAATGGCGCATCGTTTTGACGCCCTTTTGCAAAGCAAGTTCCACGGATCGGGCCTAGATCTCCTGTGA------
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>chr3D_1_TraesCS3D01G464900
CCCGTAGTAATTTGCTCATATTTCCAACATCTATCATGGTTGCCCTTGCTATGTAGTGTGCTGAATAATTAAGAAAAATG
GTGGTGTGCGTCGCATTAATGCAGAGGTGGGAGGTTTTAATCTCCTTTTCGAAAAATGTTGGTACAGTACCTTTTTTTTG
CGCTTGGAAGTATACGTGCTTGGTTGCACATTTCCAAACTGACGGTACCTATCATTTTGAAAATATATACCTATTTGATT
TGATTGGATTTTGCATATGGAAATTAGGGGTGGGAGCCATTCGATTAGAAATAGGAATTTCCTAGTGGACTATAGAACAT
AAACACTTCCGCCATGCCTGGGAGTTGTAAAGAAACACGGACGTACGCCCCCAACATATGGCTGGCCGGTCCCGTGTGCG
TGCACGGGCACCGGGATGGATGTGTGCATGCCTGGGGTGCCGCGTTTGTGCAAAGGCCCGGACGCCTGTGTACATGTGTA
CGCGTGTAGATGGCTGTTTTGTTGCTCGTGGCCAGCAGCAGTTCCGCGCCGGTGTGACCGTGTGAGAGAGCGTCATGGGG
CGAGGTAGTCCCAGCCGACCGGTGCATGTTCCCGCCTCCAGTCTCCATGTCCAAGTCGAGTCGACAGCGTCCCGATGCCA
AGGTGCGGCTCAAGTTGTTGTTCCAGACCTCACCTGCCCGGCGTCTTCACGGATGAGTGGTTGTAGGCTTGTAGCTGCCG
ACAAAGCCGCTGATATGATGGACACTCAGCTGAGCATGGCCTTAACGACAAGGCTCTATCATGACTAATCTGACATCACT
AGCTGCAGTAC--TCGTCGCTACGCTCGCTACAGGAAACGCACACATGCATGCATGACAGCAAGCAATTTATGTTCCTGT
CGGCCAATAATTTGGCAACCACGTTCGCCACGAGCCGGCCGATATGGTACCGGAAGTTTAGGACATCCAGATCTATTATC
TTATTTGTTTCATCGCGAGCCGCGCAACATTCCAGCAAAAGCATGTCGCTAGCATGTGCCCTCGCCGGCGGCCCAGCCGC
GTTCAAGGACGTCTTCGTCGACAGCCGCCACGACCCGCCGTTGCCCCTGCCGAAGAAAGACCACAGCGGTGGCGACGGCG
ACGGCGACGCCCTCACGAGCAACCCGATGACGGGGCAGCGCCTGTACCAGGGCACCTGGGTGATGGAAGGGTGGATCCCG
GGGATCGTCCAGATTCAAAACGGCGGCGGCTTCACGCCACGTCGTGGCGATGTCATCCTCGCCAGCCCGCCCAAGTGTGG
CACCACGTGGCTCAAGGCGCTCGCCTTCGCCACCATGGCACGCGGGGCGCACCCGCCCGCCGCCCCCGACCACCCGCTCC
TCCGCCACACGCCGCACGACTGCGTCCCGTTCATGGAGGTGATCGTGTCCGGCGGGTGGGGGAGCAAGCTGGACGCGCTG
CCGTCGCCGAGGCTCTTGTCCACGCACATGCCCTACTCTACTCTGCCCGCCTCCATCACCAAGAATCCAGACTGCAAGAT
CGTCTACATCTGCAGGTGCGCGCGTACGCTTGCGTCGCATGATATATTATTGTGTATACTCTA-----------------
---------------------------------------------TCTATATAACTTCAAATCTCTCGTCGATCTGATAC
CTTTTGAAACGTGTTTGGCGTTTCTCTAAGCCTCGAAGGAAAAGGTATCGGACGTCTATTTTGACTACTACTTATTCATT
TGGTTTGGTTATTTCATCATAGTAATACATAACATTAACGTTAGTTATTGATGATGGGTGACTGTTGATACGAACAAAAT
TTACTGATTGTCACTCATGACTCATCAGGGACCCAAAGGACATGGTAGTCTCAATGTGGCACTTCCTTAGGCATCCTCGG
CCAAACCTGTCATTCAACGACATGTTCGAGCTCACCTGCGAGGGCAGATCTCTATGCGGCCCATTCTGGGACCACATCCT
CGGGTACTGGAACGCCGGCAAAACCATGAGTGGCGACGAGGGCCAACCAGAGATGACCTCGGCAGCGGTCCTTTTCCTCA
GGTACGAGGAAATGATAAAAGACCCAGCCAACAATGTACGAAAGCTGGCGCGGTTCGTTGGGCAACCATTCTCCGCTGCC
GAGGAGGAAACCAAGGTTGTGGACGACATTGTGGATCTGTGCAGCTTTGAGAAGCTGAGCAGCCTCAAGGTGAACAAGGC
GGGCCCTGTGGTGTTCACCAAGTATCCTCGTGAATCTTACTTCAGGAGAGGGGGTGTAGGAGACTGGATGAACCATATGA
CACCTGAAATGGCGCATCGTTTTGACGCCCTTTTGCAAAGCAAGTTCCACGGATCGGGCCTAGATCTCCTGTGAATTCTA
-TTACCAGCATGCAAACTTGTATGATTTTACACTCTGATCCTTTGTGAAATATTATGATTCAACATGCATGTCATGTGTA
AGATCGGACCAAAGAGAGCCCTGCCTAGTCCCGTCTGCCCACGAGTAGACATGACCGAAT--CTCGTGCACAAAAGGCAG
GTCACCATCAAGGTTATTATTATTATTATTATTATTATTAGATTTGCACAAACTGTTAGATGCTAGTTTCTAAACTTTTG
GGGACGATTAGAAATCTACATACCAGTTTGTATGCATGCATGATAGCTTAAATATAAAATTAGCTAATACACAAACTACT
GATCAAATATTCTGCCACAAGTAAAATTTGCATAACAAGCTAAAATCCAAAGCGCACCATAGAAGATTGTCAGACTTTAT
TCTATGTGTTTCAGGTGTAAGAGCCACTAGCCACATTCAAACTGATAAAGAAAAAAAACATTTTTCTAATTGAAAATACA
TATTATGTGATGGTCCTCTTGGTATGGTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGCCTCTTCACCGGTGCCGGTGAGA
TGAGGAGGATGGACGAGAGAATGCGGCTGCACGATCTAGATCTCCCCCGGGTCGCTAGGCAGGACGACACGGGGGACACA
ATGAGATGAGGAGGAGGGACGAGGGAGTTTTACATGGTTAAACTGACTGATAGCACCTCTATCTGATCCCCTAAAACTTA
AAGGAGTAAACGTCTGAGTATCCCCTGAGTATATTTC
>chrUn_765
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--------------------------------------------ACGCCAAGGCTCTACCATGAG--ATCCGACATCACT
GCACTGGCACGATTCGTCGCTACGCTCGCTACAGCAA----ACACATACATGCATGACAGCAAGCAATTTATGTTCCTGT
CAGCCAATAATTTGGCAACCACGTTTGCCACGGGCCGGCCGATATGGTACCGGAAGGTTAGGACATCCAGATCAATTATC
TTATATGTTTCATCGCTAGCCGCGCAACATTCCAGCAAAAGCATGGCGCTAGCAAGTGCCCTCGCCGGCGGCCCAGCGGC
GTTCAAGGACGTCTTCGTCAACAGCCGCCACGACCCGCCGTTGCCCCTGCCGAAGAAAGACCATAGCGATGGCAACGGCG
ACGGCGACGCCCTCACGAGCAACCCGATGACGGGGCAGTGCCTGTACAAGGGCACCTGGGTGATGGAAGGGTGGATCCCG
GGGATCGTCCAGATTCAAAACGGCGGCGGCTTCACGCCGCGTCCTGGCGATGTCATCCTCGCCAGCCCGCCCAAGTGTGG
CACCACGTGGCTCAAGGCGCTCGCCTTCGCCACCATGGCACGCCGGGCGCACCCGCCCGCCGCCCCCGACCACCCGCTCC
TCCGCCACACGCCGCACGACTGCGTGCCGTTCATGGAGGTGATCGTGTCGGGCGGGTGGGGGAATAAGCTGGACGCACTG
CCGTCCCCGAGACTCTTGTCCACGCACATGCCCTACTCTACTCTGCCCGCCTCCATCACCAAGAATCCAGACCGCAAGAT
CGTCTACATCTGCAGGTGCGCGCGTGC----------CATGATAAATTATTGTGTTTGTGTTTTCATGGTTGTTTTTGAT
ATAGCTAACCACTCATTTCAAGTGGCATGATAAGTTATTGTGTACTCTATATAACTTCAAACCTCTCGTTGATATGATAC
CTTCTGAAACGTGTTTGACGTTTCTCTAAGCCTTGAAGGAAAAGGTATCAGACGTCTATTCCAACTACTACTTATTCATT
TGGTTTGGTTATTTCATCATAGTAACACATAACATTAACGTTAGTTACTGATGATGGCCGACTGTTGATACGGACAAAAT
TTACTGATCATCACTCATGACTCATCAGGGACCCAAAGGACATGGTAGTCTCAATGTGGCACTTCCTTAGGTATCCTCGG
CCAAACCTGTCATTCAACGACATGTTCGAGCTCACCTGCGAGGGCAAATCTCTATGCGGCCCATTCTGGGACCACATCCT
TGGGTACTGGAACGCCAGCAAAACCATGAGCGGCGACGAGGGCCAGCCAGAGATGACCTCGGCAGCGGTCCTTTTCCTCA
GGTATGAGGAAATGATAAAAGATCCGGCCAACAATGTA------------------------------------------
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>chrUn_2056
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---------------------------------------GAAAGCTGGCGCGGTTCGTTGGGCAACCCTTCTCCGCTGTC
GAAGAGGAAACCAAGGTTGTGGATGACATCGTGGATCTGTGCAGCTTTGAGAAGCTGAGCAGCCTCAAGGTGAACAAGGC
GGGCCCTGTGGTGTTCACCAAGTACCCTCGTGAATCTTACTTCAGGAGAGGGGGTGTAGGAGACTGGATGAACCATATGA
CACCTGAAATGGCACATCGTTTTGACGCCCTTTTGCAAAGCAAGTTCCACGGATCGGGCCTAGATCTCCTGTGAATTCTA
TTTACCAGCATGCAAACTTGTAAGATTTTACGCTATGATCTTTTGTGAAATATTATTATTCAACATGCATGTCATGTGTA
AGATCGGACCAAAGAGAGCCCTGCCTAGTCCCATCTGCCGACGAGTAGACATGACCGAAACACTCGAGCACAAAAGGCAG
GTCACCATCGCGGTTG------TTATTATTATTATTATCAGCTTTGCACAAACTGTTAGATGCTAGTTTCTAAAATTTTG
GGGACGATTAGA-ATCTTCATACCAGTTTGTATACATGCATGATAGCTTAAATATAAAATTAGCTAATACACAAACTAAT
GATCAAATATTCTACCACAAGTAAAATTTGCATAACAAGGTAAAATCCAAAGAGCACCATAGAAGATTGCCAGACTTTAT
TCTATGTGTTTCAGGTGTAAGAGCCACGAGCCACATTCAAACTGATGAAAAAAAACAACATTTTTCTAATTGAAAATACA
TTTTGTGTTATGCTCCTCTTGGTATGGTCA--------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S----------S-----SSS---S---------
SSSSSSSSSSS-----------------------S--SSSS------S--------------------------------
-S-----------------------S------S-----------------------S----------------S------
----S-----------S----------------------------S--------S----------------------S--
-------------------S-------------------------------------------S----S----S------
--------------------------------------S--------S--------------------------------
--------------------------------------S----S------------------------------------
-------------------------------------------S------------------------------------
-------------------------S-----------------------S-------------SS-----------S---
-----S-----S------------------------------------------------------------S-------
-------------------------S-SSSSSSSSSS-------S----------S-SSSS-S-----------------
-------------------------------------------------------------S-------S---S------
---S-------------S---------------S---------------S----------SSS-----------------
-------------------------S---------------------S---------SS-------------S-------
--------SS-------------------------------------------------------------S--------
----------------------------------------------S---------------------------------
S---------------S-------------S--------------S----------------------------------
----S-----------------S--S------------S----------------------------S----------S-
--S--------------------S-----S--------------------------------------------------
------------------------S-------------------------------------------------------
-------------S------------------------------------------------------------------
----------------------S--------S--S-----S---------------S-----------------------
--------------------------------S------S-------------------S------S-------------
---------SS----SSSSSSS----------------S--S--------------------------------S-----
------------S----S---------------S--------------------------------------------S-
-------------S-------------------------S------------S----------------S----------
---------------------------S------------------S--S-----S------------------------
-S--S---S---S-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_93
-------------------------------------------------------------------------AAAAATG
GTGGTGTGCGTCG-------------------------------------------------------------------
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>reverse_1386
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-------------------------CCCGTTCATGGAGGTGATCG-----------------------------------
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>forward_758
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------------------TGGACACTCAGCTGAGCATG------------------------------------------
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>reverse_2159
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------------------------------------------------------------------------------CC
GAGGAGGAAACCAAGGTT--------------------------------------------------------------
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>forward_838
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------------------GCTACGCTCGCTACAGGAAA------------------------------------------
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>reverse_2513
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--------------------------------GTCTGCCCACGAGTAGACAT----------------------------
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