>input_sequence_54311
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----------------------------------CTACCACAA-----GGTTAACATAC-------ATGACCTCCTCTGC
AAGGCGCGTGGTATCAGCATAGTACT-----AGCCTGTCGCTCCGCTTCACACCATGGCGTCGGCAGGCGACGTGTTCGA
CCATGGACGCCATGGCACCAGCCTTGCCAAAGTCGAGCAGGCCACGAGCTGCTGTGCGACCAGTCGCGTCGACGCGCAGC
AGTCTCCTCCGAAGCCGCTGCTGGTGGCCGCCCCGTGCGACGCAGGGGAGTACCCGGTGGTGCTATTCTTGCACGGCTAC
CTCTGCAACAACTACTTCTACTCCCAGCTGCTCCAGCATGTCGCCTCCCATGGCTTCATCGTCATCGCTCCTCAGGTACT
GTATTATATTAACAAGGTCATCAAGCTAATGTCGGCGTGGCACTGAA---CTTCTTCTCCAGAGATGAACACTGACTAAA
CTCGAGTA----CAATTGCAGCTGTACACGGTGTCCGGACCCGACACCACCGGCGAGATAAACTTGGCGGCCGCCGTTAT
CGACTGGCTCGCCGCCGGCCTCTCTTCCACGCTCGCACCCGGTATTCGACCGAACCTAACTGCGGTCAGTT-ACCAAATA
CCCTCGT-----TGCTCTCTAA-TTAACAGAACAATAATTCGAGCTCGAGGTACTAACAA---TCGCATCATCT---ATC
AGGTGTCCATCTCCGGCCACAGCCGCGGTGGCAAGGTGGCCTTCGCGCTCGGGCTGGGCCACGCCAAGACCTCCCTGCCT
CTCGCGGCACTCATCGCCGTCGACCCCGTGGACGGCACCGGCATGGGCAACCAGACGCCTCCGCCAATCCTGGTCTACAA
GCCGAACACGCTGCGGGTCCCGGCGCCGGTCATGGTCATCGGCACGGGCCTCGGCGAGCTGCCTCGCAACGCCCTGTTCC
CGCCGTGCGCACCTCTGGGCGTGAGCCACGCGGAGTTCTACGACGAGTGCTCGGCGCCGGCGTGCCACCTCGTGGCGAGG
GACTACGGGCACACCGACATGATGGACGACGTGACGACGGGCGCCAAGGGGCTGGCCACGCGCGCCCTCTGCAAGAGCGG
CGGGGCCAGGGCGCCCATGAGGCGATTCGTCGCCGGCGCCATGGTGGCGTTCCTCAAGAAGTGGGTGGAGGGGAAGCCGG
AGTGGTTGGATGCCATGAGGGAGCAAACTGTGGTCGCGCCTGTGGTGCTGTCCGTGGTGGAGTTCCGTGATGAATAGCC-
----AG-GATGCCTTGTCAGTTGTCATTAGAGTTT-AATCGATAGCGGTGACTCATACTCCGTATAGTAGGATAAACAAG
CTTCTTTGTATGTTCATACATCAGAGAATATAAAGTGTTTACTGAAAC--------------------------------
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>chr3B_1_TraesCS3B01G119400
TGTTGTGAATTTGAAAAAATATTGATGTTTCTAATTTTGTTGGTC-TTTTCTAAAAATATTGAAATTTTCAAAAAACAAT
TGTTCGCTTTTTTTGATAATTGTTGGAGATTTTAAAAATTGTTCATGTGTCCAAGAATATTCGCCAATTCATAATTTTTT
TTTGAATGTT-CAAATTTTTTTAA---------AAT-------ATATTTCTAATCTGACACTATAGTATTTTCTTAAATG
TTC-ACACTGGCCA-TTGGTTAGCGGTGCGTGTTCATTCTATGCTGGTTGACTATAAATGAAAAAA-TTGTTGACACATG
CGAATAAAAAAGAATATGTTATTTGGCTTTAATTAAAGCAAAATTATGAGCTCTTGAGCACTAA-AATAATCAGAGAGAA
AAAAC---CC---T---AAAAAAGGGACATTCATGCCTAATTATGCTAATGAAAATAGGATTTATGCGTTTGCAATTAAT
AATCCGCCTGGTTACGCCGTCGTAGGATTGAGTGGTCCAAGCAACC------CGAAGGTGGCCGCGCAGGCACCAAATAA
GGAGGCAGACACAACCCTAAGATGGAGGCAGACCCGAAG--AAAAAAAGGCATAAGTTGGGTGCTTGTCACCACGCCGAC
CAACCCCACCACTATCAAGATTTCCCGTGTCAAACATATCCAGCGAGAAGACCATAACTCCTTGCTTTGTCGCCTATCAT
TGTAGAGATATA-TT-TTT--GGATGACACGTCAATTATTTTTCCCGATGCTTCTAG--------A---AAAAATCTATC
CCGTTGCAA--CACGGACATATGTGCTAGTAGTATAAATGTAAAGAAATATCTAGTCCGTACAGCTACACATGTAGATTG
ATGACTAGCAAGATTAATCGAAGATGGAAACAAAGGAGTGTCCCAATCTTCGATCCTATAAG---------------TAC
AAGAGAATGTGAAAAGAAGACT---AATGCATCGAAATCAGATATTTCTACGAGAACTACGAAGATAAGGGTCCCCAGAA
CAGACGGCCGTTAAGCGGCCACACGCACCCGTAACTACCACAA-----GGTTAACATAC-------ATGACCTCCTCTGC
AAGGCGCGTGGTATCAGCATAGTACT-----AGCCTGTCGCTCCGCTTCACACCATGGCGTCGGCAGGCGACGTGTTCGA
CCATGGACGCCATGGCACCAGCCTTGCCAAAGTCGAGCAGGCCACGAGCTGCTGTGCGACCAGTCGCGTCGACGCGCAGC
AGTCTCCTCCGAAGCCGCTGCTGGTGGCCGCCCCGTGCGACGCAGGGGAGTACCCGGTGGTGCTATTCTTGCACGGCTAC
CTCTGCAACAACTACTTCTACTCCCAGCTGCTCCAGCATGTCGCCTCCCATGGCTTCATCGTCATCGCTCCTCAGGTACT
GTATTATATTAACAAGGTCATCAAGCTAATGTCGGCGTGGCACTGAA---CTTCTTCTCCAGAGATGAACACTGACTAAA
CTCGAGTA----CAATTGCAGCTGTACACGGTGTCCGGACCCGACACCACCGGCGAGATAAACTTGGCGGCCGCCGTTAT
CGACTGGCTCGCCGCCGGCCTCTCTTCCACGCTCGCACCCGGTATTCGACCGAACCTAACTGCGGTCAGTT-ACCAAATA
CCCTCGT-----TGCTCTCTAA-TTAACAGAACAATAATTCGAGCTCGAGGTACTAACAA---TCGCATCATCT---ATC
AGGTGTCCATCTCCGGCCACAGCCGCGGTGGCAAGGTGGCCTTCGCGCTCGGGCTGGGCCACGCCAAGACCTCCCTGCCT
CTCGCGGCACTCATCGCCGTCGACCCCGTGGACGGCACCGGCATGGGCAACCAGACGCCTCCGCCAATCCTGGTCTACAA
GCCGAACACGCTGCGGGTCCCGGCGCCGGTCATGGTCATCGGCACGGGCCTCGGCGAGCTGCCTCGCAACGCCCTGTTCC
CGCCGTGCGCACCTCTGGGCGTGAGCCACGCGGAGTTCTACGACGAGTGCTCGGCGCCGGCGTGCCACCTCGTGGCGAGG
GACTACGGGCACACCGACATGATGGACGACGTGACGACGGGCGCCAAGGGGCTGGCCACGCGCGCCCTCTGCAAGAGCGG
CGGGGCCAGGGCGCCCATGAGGCGATTCGTCGCCGGCGCCATGGTGGCGTTCCTCAAGAAGTGGGTGGAGGGGAAGCCGG
AGTGGTTGGATGCCATGAGGGAGCAAACTGTGGTCGCGCCTGTGGTGCTGTCCGTGGTGGAGTTCCGTGATGAATAGCC-
----AG-GATGCCTTGTCAGTTGTCATTAGAGTTT-AATCGATAGCGGTGACTCATACTCCGTATAGTAGGATAAACAAG
CTTCTTTGTATGTTCATACATCAGAGAATATAAAGTGTTTACTGAAACCGACAATCCATAACTTGAACAGGGCATAACCC
C-TTCCATTACTGCGACATAACGAAAATACAACAGGTCCACAGAATGAGACAGGAAAGAAAAGAGCGAGTTCAAGCATTG
CCGAGAAACCTACTGTAAGCACTCGC--------------ACCGCAGGGCGAAAACCCGACGACACTACTAAGTCTGTTA
ATGGAATAGAGTCACGGCCCATAAACAG-GGCTACCAACCCACATTGGTG------------------------------
---------------------AACGCAGGGTAAGAAAGCAATGCTG--AAGAGAGACCCATGGATGAACACAGGCTT---
TTTCTTCTGTCATCTCCTCTT---CAGGGAGCCTCCTCGCTTTGGCTTGTAGCACAAATGTGCATCATCCTCGACCGC-T
GTTCTTCAGCATGTCCATCCCGGCTCGCAGATCCACTGCATCCTCCTGCTTCAGCAAACCTGCCCA--------------
--CAAATAGAGAAACTACATTCAAAAGGAGTTTTGAGACGTCTAAGCTCAAATGTAGCACTATTGTGGCAAGTCCAAATA
GCCCAGCAAAGCACAGCAATACCAACTGTGTAGAAAGTCTCCCCCTGTGAGAAGAATGTATAACACCCGCAGCAATACCA
ACTGTGTAGAAAGTCTCCCCCTCTGAGAAGAATGTATAACACCATGAATAAGCCGGCCACATGTTGTTTGGACACAAATC
AGTGCCAAACATACATGCAATCGTTCTCAAAGTACTTTAGCAACAGGACAATCCATAACTTGATTTGCTGGTCTCTTGTA
ATTGCCATATATACATAGTATTGTTTGGCACTCCTCCTTAATCACAACTAGCTATGTTTTAAGCACATATGGATGAGTGT
ATGTGCATATGTATCAGCGTTTGCTTCTCTACTGTGTTAAACTATCTAAGTTGAGACTGCGCTGAAAAGCCTCTATATGC
CGCACTGGTTTAGTAAATCCATCTGCTACTTAAATGAACATTTAGAAACTTATTGACCACCCATTCTCGAACAAGGTGGT
AGTCAATTTTAATATGCTTT
>chr3B_3
--TTGTGAATTTTAAAAACTATTCATATTTCTAATTTTGTTTGTGTTTTCCCAAAATATTGGAAACT-------AAAAAA
TGTTTGCATTTGTTCAAAATTGTTCGGGATTTAAAAAATTGTCCACGTTTTGAAGAATATTCGCAATTC----ATATTTG
TTTGAATGTT-AAAAAAATA--AA---------AAA-------AAATT-CTAATCTAA----------------------
-----CGTTGACCA-TTGGTTAGCGGTGCGCGTTCGTTCTATGCTGGTTGACTATAAATGAAAGAAATTATAGGCACATG
CCAATAAAAGAGAATATGTTGTTTGACTTTAATTAGAGCAAAATTATGGACACTTGAGCAGTGA-AATAATCAAAGAGAA
TAAACTCACC---T---AAAGAAGGGACATTCATGCCTGATTATGCTAATGAAACG-AGATTTATGTG-CTTCAATTAAT
AACCCTCTCGGTTACGTCATCGTAGTAGAGAGTGGTCGAAGCAACC-TGTCATGAAGGTCGCCGCGCAGCCATCAAATGA
GGAGGCAGGCACAACCACGAGATGGATGCGGACCCGGAG---AAAAAATGCACTAGTTGGATGCTCGCCACCATGCCGAC
CAACCCCACCACTATCAAGATTTCGCATGTCAAACATGTCTAGCGAGAAGACCATAACTCATTGCTCTGTCGCCTATCAT
TGTGGAGA-CC-TTT-TTT--GGATGACACATCAATTATCTTTCCCGTTGCTTCTCGC---AAA------AAAATCTCTT
CCGTTGCAACACATGGGCATATGTACTAGT--------------------------------------------------
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>chr3D_3
--TTGTGAATTTCAAAAAATATTGATGTTTCTAATTTTGTTCGTGTTTTTCAAAAATATAGGAAT--------AAAAAAA
TGTTCGCATTTTTAAAGAAAAATTCGGGATTTAAAAAATTGTTCATGTTTCCAAAAA-ATTCGCCAATTCATATTTTT--
-T-GAATGTTCAAAAAAATC--AA---------AAA-------ATATTTCTGATGTGACACTATAGTATTTTCTTAAATA
TTC-ACGCTGGCCA-TTGGATAGCGGTGCGCGTTCGTTCTATGCTGGTTGACTATAAATGAAAGAAGTCGTGGGCACGTG
CCAATAAAAAAGAATATGTTCTTTGGCTTTAATTAGAGCAAAAATATGGGCACTTGAGCACTAA-AATAATCAAAGAGAA
TAAAC---CC---TCACAAAGAAGGGACATTCATGCCTGGTTATGCTAATGAAACG-GGATTTATGCG-TTGCAATTAAC
AATCCATCCGGTTACGCCGTCGTGTGATAGAGTGGTCGAAGGAATCGTGTCCCGAAGGTCGCCGCGCAGCCAACAAACAA
GGAGGCAGGTACAACCCCGATATGGAGGCGGACCCGGAG--GTAAAAATGCATGAGTTGGGTGCTCGCCGCCACGCCGAC
CAACCCCACCACTATCAAGATTTCGCGTGTCAAACATGTCCCGCGAGAAGACCATAACTACTTCCTCTATCGCCTACTAT
TGTGGACACCC-TGTGTTT--GGATGACACATCAATTATTTTTTTCGTTGCTTCTCG---AAAA------AAAATATCTT
CCATTGCAACGCACGGGCATTTGTGCTAGT--------------------------------------------------
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--------------------
>chr6B_3
--TTGTGAATCTCAAAATCTATTAAGGTTTCTAATTTTGTTCGTGTTTTTGCAAAAATATTGGAATTTTCAAAAAACAAC
TGATCGCATTTTTTGAAAATCGTTTGGGATTTCATAAATTGTTCACGTTTCCAAGAATATTCACCAATTCATATTTTT--
-TTGAATGTTCAAAAAAATA--AA---------AAT-------ATATTTCTAATCTGACTCTATAGTATTTTCTTAAATA
TTT-GCGTTGGCCA-TAGGTTAGCAGTGCGTGGTCGTTCTATGCTGGTTGAGTGTAAATGAAAGAAATTGTTGGCATATG
CCGATAAAAGAGAATATGTTGTTTGGCTTTAATTAGAGCAAAATTATCGGCACTTGAGCACTAA-AATAATCAAAGAGAA
TAAAA---CA---TCAAAAAGTAGGGACATTCATGCCTAATTATGCTAATAAAACG-AGATTTATGCG-GTTCAATTAAT
AATCGACCTGGTTACGCTATCGTATGATAGTGTGGTCGAAGCAACCATGTCCCGAAGATCGCCCCGTAGCCACCAAATGA
GGT-GAAGGCACAACCCGAAGATGGAGACAGACCCAGAG--GCAAAAAGGCATGAGGTGGGTGCTCGCCACCACGCCGAC
CAACCCCACCACTATCAGGATTTTCCGTGTCAAACATATCCAACGAGAAGACAATAACTCCTTGCTCTATCGCCTATCAT
TGTGGAGA-CC-CTT-TTTTCGGATGACACGTCAATTATCTTTCCTGTTGCTTCTCGC---AAAAA---AAATATCTCTC
CCGTTGCAACGCACGGGCATATGTGCTAGTA-------------------------------------------------
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>chr7D_3
--TTGTGAATTTCAAAAACTATTCGTGTTTCTAATTTTTTTCTTGTTTTTCCAAAAATATTGGAATTTTCAAAAAAAAAG
TGTTTGCATTTTTTGAAAATTGTTTGGGATTTATAAAAGTGTTCACGTTTCCAAGAATATTCACCAATTCATATTTTT--
-CT-AATGTT-CTAAAAATC--AA---------AAA-------ATATTTCTAATATGACGCTATAGTATTTTCTTAAATA
TTTGGCGCTGGCCA-TTGGTTAGCGGTGCGCATTCGTTCTATGCTGATTGACTATAAATGAAACAAATTATGGGCAAGTG
CGAATAAATGAGAATATGTTGTTTGAGTTTAATTAGAGCAAAATTATGGGCACTTGAGCGCTAA-AATAATAAAACAAAA
TAAAC---CC---TCAAAAAGAAGGGACAAACATGCACGATTATGCTAATGAAACG-GGATTTATGCG-CAGCAATTAAT
AATCCATCCGATTACACCGTTGTAGGATAAAGTGGTCGAAGCAACCGTGTCCTGAAGGTCACCACGCAGCCATCAAATGA
GGAGGCAGGCACACACCCGAGATGGAGGCGGACTCGGAGGAAAAAAAAGGCATGAGTTGGTTGCTCGTCAGCACACCAAC
CAACCCCACCACTATCAAGATTTCGCGTGTCAAACATGTCCAGCGAGAAGACCATAACTCCTTGCTCTGTGGCCTACCAT
TGTGTAGACCC-TTT-TTT--GGATGACACATCAATTATCTTTCCCGCTGCTTCTCGC---AAA------AAA-------
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>chr2A_3
--TTGTGAATTTAAAAAACTATTCATGTTTCTAAAAAATTTCATGATTTTCTTAAGATATTGGAATTTGCAATAACAA--
TGTTCGCATTTTTCTAAAATTGTCCGGGATTT-AAAAATTGTTAATGTTTCCAAGAATATTCACCAATTCGTATTTTT--
--T-AATGTT-AAAAAAAAT--CA---------AAA-------ATATTTCTGATATGAAACTATAGTCTTTTTTTAAATA
TTTG-CGCTGGCCATTTAGTTAGCGGTGCGCATTCGTTCTTTGCCGGTTGACTATAAATGAAAGAAATTGTGGACACGTG
TCAATAAAT-----TATGTTATTTGGCTTTAGTTTGAGCAAAATTATTGGTACTTGATCACTGG-AATAATCGAAGAGAA
TAAAC---CC---TAAAAAAGAAGGGACATTCATGCCTGATTATGCTCATGAAATG-GGATTTATGCG-TTGCAATTAAT
AATCCACCCGGTTACGTCGTCGTAGCATAGAGTGGTCGAAGCAACCATGTCCCGAAGATCACCGCGCAGCCAACAAATGA
GTAGGCAGGCACAAGCCCGAGATGAAGGCGAACCCGGAG--GAAAAAAGGCATGAGTTGGGTGCTCGCCACCACAACGAC
CAACCCTATCACTATCAAGATTTTGCGTGTCAAACATATCCAGCGAGAAGACCATAACTTCTTGCTTTGTCGCCTATTAT
TGCGGAGATCC-TTT-TTT--GGATGACACATCAATTATTTTCCCCGTTGCTTCTTGCAAAAAA------AATATACCTC
CCGTTGCAACGCACGGGCATATGTGCTAGTA-------------------------------------------------
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>chr5D_3
--TTGTTAATTTCAAAATCTATTAATGTTTCTAATTTTGTTCGTGTTTTTCCAAAAATATTGAAATTTTCAAAAAACAAT
TGTTCGC-------------------------------------------------------------------------
-------------------------------------------------------------------ATTTTCTTAAATA
TCC-GCGCTGGCCA-TAGGTTAGTGGTGCGTGGTCGTTCTATGTTGGTTGACTATAAATGAAAAAAATTATGGGCATATG
CTAATAAAAGATAATATGTTGTTTGGCTTTAATTAGAGCAAAATTATAGGCACTTGAGCACTCA-AATAATCAAAGAGAA
TAAAC---AA---TCAAAAAGTAAGGACATTCATGCCTGATTATGCTAATGAAACA-TGATTTATGCA-TTGCAATTAAT
AATCGACCTGGTTATGCTGTCATATGATAGAGTGGTCGAAGCAACCGTATCCCGAAGGTTGCCGTGCAGCCACCAAATGA
GGAGGCATGCACAACCCGAAGATGAAAACAGACCCGGAG--GGAAAAAGGCATGAGTTGGGTGCTCACCACCACGCCGAC
CAACCCCACCACTATCAAGATTTCCCATGTCAAACATGTCCAGCGAGAGGACCATAACTCCTTACTCTGTCGCCTACCAT
TGTGGAGACCC-TTT-TTT--GGATGACACGTCAATTATCTTT---GTTGCTTGCA-----AAA-A---AAATATCTCTC
CCGTTAACACGCACGGGCATATGTGCTAGTGTATA---------------------------------------------
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>chr7B_4
---TGTGAATTTTTAAAAA-ATCCATATTTCTAATTTTGTTTGTGTTTTTCCAAAATATTGGA---TTTGACAAAAAAAA
TCTTTGCATTTGTTC-AAATTGTTCGGGATTTAAAAAATTGTTCACGTTTTGAAGAATATTCACCAATTCTTATTTTT--
-TTGAATGTT---------A--AA---------AAACAAAAATATATTTCTAATCTTTCTCTATGGTAATTTCTTAAATA
TCC-GCGCTGGCCA-TTGGTTAGCTATGCGCGTTCATTCTATGCTGGTTGACTATAAATGAAAGAAATCGTAGGCATGTG
TCAATAAAAGAGAATATGTTGTTCGACTTTAATTAGAGCAAAATTGTGGGCACTTGAGCACTGA-AATAATCGAAGAGAA
TAAAC---CAGCAT---AAAGAAGGGACATTCATGCCTGATTATGCTAATGAAACC-GGATTTACGTG-CTTCAATTAAT
AATCCACCCGATTACGCCGGTGTAGGAGAGAGTGGTCAAAGAAACC-TGTCATGAAGGTCCTCGCGCAGCCACCAAATGA
GGAGGCAGGCACAACCGCGAGATGAAGGAGAACCCGGAG--GAAAAAATGCATGAGCTGGGTGCTCACCACCACGCCGAC
CAACCCCACCACTATCAAGATTTTGCATGTCAAATATGTCTAGCGAGAAGACCATAACTCCTTGCTCCGTCGCCTACCAT
TGCGGAGACCC-TTT-TTT--GGATGACACATCAATTATCTTTCCTATTGCTTCTTGC---AAA-A---AAAATTCTCCC
CCATTGCAACGCACTGGCATATGTG-------------------------------------------------------
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>chr7D_8
-------AATTTAAAAAACTATTCATATTTCTAATTTTGTTTGTGTTTTTCCAAAATATTGGAATTC----CAAAAAAAA
TGTTTGCATTTGTTC-AAATTGTTCGGGATTTAAAAAATTGTTCACGTTTTGAAGAATATTCGCCAATTCATATTTTT--
-CTGAATGCT---------A--AA---------AAA-------ATATTTCTAATGTAGCGCTATGGTAATTTCTTAAATA
TTT-GCGCTGGCCA-TTGGTTAGCGATGCGCGTTCGTTCTATGCTGGTTGACTTCAAATGAAAGAAATCGTAGGCACGTG
CCAATAAAAGAGAATATGTTGTTTGACTTTAATTAGAGCAAAATTGTGGGCACTTGAGCACTGAAAATAATCAAAGAGAA
TAAAC---CATCAT---AAAGAAGGGACATTCATGCCTGATTATGCTAATGAAACG-GGATTTATGTG-CTTCAATTAAT
AATCAACCCGGTTACGCCGTCGTAGGAGAGAGTGGTCGAAGAAACC-TGTCATGAATGTCGTCGCGCAGCCACCAAATGA
GGAGGCAGGCACAACCCCGAGATGAAGTTGGACCTAGAGG-AAAAAAATGCATGAGCTGGGTGCTCGCCACCACGCCTAC
CAACCCCACCACTATCAAGATTTCCCGTGTCAAATATGTCTAGCGAAAAGACCATAACTCCCTGCTCTGTCGCCTACCAT
TGTGGAGACCCTTTT-TTT--GGATGACACATCAATTATCTTTCCTGTTGCTTCTCGC---AAAAAT-----AATCTCGC
CCATTGCAACGCACTGACATATGTG-------------------------------------------------------
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>chr4B_90
--------------------------------------------------------------------------------
----------TTTTGAAAATTGTTCAGGATTTAAAAAATTGTTGATTTTTCCAAGAATATTCGCCGATTCATATGTTT--
-TTGAATGTT---------A--AACAAAATCAAAGA-------ATACTTCTAATATGACGCTATAGTATTTTCTTCAATA
TTC-GCGTTGGCCG-TTGGTTAGGGGTGTGTGTTCGTTCTATGTTGGTTGACTATAAATAAAACAAATTGTGGGCACGTG
CCAATAAAAGAGAATATGTTGTTTGGCTTTAATTAGAGCAAAATTATGGGCACTTGAGCACTAA-AATAAGCAAAGAGAA
TAAAC---TC---TAAAAAAGAAGGGACATTCATGTCTGATTATGCTAATGAAACG-AGATTTATGCG-CTGCAATTAAT
AATCCGCCCGGTTACACCGTTGTAGGATAGAGTGGTCAAAGCAATCATGTCCC-AAGGTCGCCGCTCAACCACCAAACGA
GGAGGTAGGCAGAACCCTGAGATAGAGGCGGACCCGGTG--GAAAAAAGGCATGAGTTGGGTGCTCGCTACCACGCCGAC
CAACCCCACCACTATCAAGATTTCACGTGTCAAACATGTCCAGC-AGAAGACCATAACTTCTTGGTATGTCGCGTACCAT
TGTGTAGACCC-TTT-TTT--GGATGACACATCAATTATCTTTCCCGTTGCTTCTCGC---AAA-AAATATATATATCTC
CCATTGCAACGCACGGGCATATGTGCTAGTAATATTAA------------------------------------------
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----------------CTCTAA-GTGACAATATCT---------------------------------------------
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>chr3D_780
AAATGTG-------------------------------------------------------------------------
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-------------------------------------------AGAATTATCTTGTCCGTGCAGCTGCACG----GATTG
GCGACTAGTAAGACTAATCGAAGATGGAAACAAAGGAATGTCCCAATCGTCCATCCTATAAG---------------TAC
AAGAGAATGTGAAAAGAAGACT---AATGC------ATCAGATATTTCTGCGAGAACTACGAAGATAAGGAA-CCCGGAA
CACACGGCCGTTAAGCGACCACACGCACCCGTAACAACCACAACTCACGTTATATACTTTTTGTATATGACTTCCTCTGC
AAGGCGCGTGGTATCAGCATAGTACTCTACTAGCCTGTCGCTCTACTTCACACCATGGCGTCTGCAGGCAACGTGTTCGA
CCATGGAAGGCACGGCACCAGCCTTGCCAAAGTCGAGCAGGCCACGAGGTGCTGTGCGACCAGTCCCGTCGACGCG---C
AGTCTCCTCCGAAGCCGCTGCTGGTAGCCGCCCCGTGCGACGCAGGGGAGTACCCGGTGGTGCTGTTCTTGCACGGCTAC
CTCTGCAACAACTACTTCTACTCCCAGCTGCTCCACCATGTGGCCTCCCATGGCTTCATCGTCATCGCTCCTCAGGTATA
T----------------TCATCAAGCTAATATCGGCGTGGCAATGATCTTCTTCTTCTCAACAGATGAACACTG----AA
CTCGAGTACGTACAATTGTAGCTGTACACGGTATCCGGACCCGACACCACCGGCGAGATAAACTCGGCGGCCGCCGTCAT
CGACTGGCTCGCCGCCGGCCTCTCTTCCAAGCTCCCACCTGGTGTTCGACCGAACCTAACTGCGGTCAGTT-ACCATCGA
------TTGCTCTGCTCTCTAATTTAACAGAACAATTATTCGAGCTCGAGGTACTAAAAACAATTGCATCATCA---ATC
AGGTGTCCATCTCCGGCCACAGCCGCGGCGGCAAGGTGGCCTTCGCGCTCGCGCTGGGCCACGCCAAGACCTCCCTGCCT
CTGGCGGCCCTCATCGCCGTCGACCCCGTGGACGGCACCGGCATGGGCAACCAGACGCCCCCGCCAATCCTAGCCTACAA
GCCGAACGCGCTGCGCGTCCCGGCGCCGGTCATGGTCATCGGCACAGGCCTCGGCGAGCTGCCTCGCAACGCCCTGTTCC
CGCCGTGCGCGCCTCTGGGCGTGAGCCACGCGGAATTCTACGATGAGTGCGCGGCGCCGGCGTGCCACCTCGTGGCGAGG
GACTACGGGCACACTGACATGATGGACGACGTGACGACGGGCGCCAAGGGGCTGGCCACGCGCGCCCTGTGCAAGAGCGG
CGGGGCCAGGGCGCCCATGAGGCGGTTCGTCGCCGGCGCCATGGTGGCGTTCCTCAAGAAGTGGGTACAGGGGAAGCCTG
AGTGGTTGGATGCCATTAGGGAGCAAACTGTGGTCGCGCCTGTGGTGCTGTCCGTGGTGGAGTTCCGTGATGAGTAGCCA
GGATAG-GATGCCTTGTCAGTTGTCATTAGAGTTT-AATCGATAGCGGTGACTCATACTCCGTAT---------------
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>chr3A_820
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---------------------------------------------------------------------------GACTG
ATGACTAGTAAGACTTATCGAAGATGGAAACAAAGGAATGTCCCAATCTTCCATCGTATCAACTATCAAGTACGTACTAC
AAGAGAATGTGAAAAGGAGGACTAAAATGC------ATCAGATATTTCTTGGAGAACCACGCAGATAAGGATCCCCAGAA
CACACGGCCGTTAAGCGGCCACAAGCACCGGTAACTACCACAACTCCAGGTTAACATAC-------ACGAGCTCCTCTGC
AAGGCGCGTGGGATCGGCAGAGTAGC-----AGCCTGTCGCTCTGCTTCACACCATGGCGTCTGCAGGCGACGTGTTCGA
CCATGGACGCCATGGCACCAGCCTTACCAAGGTCGCGCAGGCCACGAGGTGCTGTCCGACCAGTCCCGTCGACGCG---C
AGTCTCCTCCGAAGCCGCTGCTGGTGGCCGCCCCGTGCGACGCAGGGGAGTACCCGGTGCTGCTCTTCCTGCACGGCTAC
CTCTGCAACAACTACTTCTACTCCCAGCTGCTCCAGCATGTCGCCTCCCATGGCTTCATCGTCGTCGGTCCTCAGGTATC
---TTATATCAACAAGGTCGTCAAGCTAATGTCGGCGCGGCAATGAA---TTTCTGCTCCAGAGATGAACACTG----AA
CTCGAGTA----CAATTGTAGCTGTACACGGTATCCGGGCCCGATACCACCGGCGAGATAAACTCGGCGGCCGCCGTCAT
CGACTGGCTCGCTGTCGGCCTTTCTTCCAAGCTCCCACCCGGTGTTCGACCGAACCTAACTGCGGTCAGTTTACCATCGA
------T-----TGCTCTCTAATTTAACCGAACAATTATTCA---TCAAGATACTAACAA---TTGCATCATCATTCATC
AGGTGTCCATCTCCGGCCACAGCCGGGGCGGCAAGGTGGCCTTCGCGCTCGCGCTGGGCCACGCCAAGACCACCCTGCCT
CTCGCGGCCCTCATCGCCGTCGACCCCGTGGACGGCACCGGCATGGGCGACCAGACGCCCCCGCCGATCCTGGTCTACAA
GCCGAACGCGCTGCGCGTCCCGGCGCCGGTCATGGTCATCGGCACGGGCCTCGGCGAGCTGCCCCGCAACGCCCTGTTCC
CGCCGTGCGCGCCTCTGGGCGTGAGCCACGCGGAGTTCTACGACGAGTGCTCGGCGCCGGCGTGCCACCTGGTGGCGAGG
GACTACGGGCACACCGACATGATGGACGACGTGACGACGGGCGCCAAGGGGCTGGCCACGCGCGCCCTGTGCAAGAGCGG
CGGGGCCAGGGCGCCCATGAGGCGGTTCGTCGCCGGCGGCATGGTGGCGTTCCTCAACAAGTGGGTGGAGGGGAAGCCCG
AGTGGTTGGATGCCATGAGGGAGCGAACGGATGTCACGCCTGTGGTGCTGTCCGTGGTGGAGTTCCGTGATGAGTAGCCA
GGATACTGATGCCTTGTCAGTCCTCATTAGAGTTTCAATCGATAGCGGTTACTCATAGCTCC------------------
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>chr7B_2352
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---------------------------------------------------------------------GGGCATAACCC
CTTTCCATTACTACGACATAACGGAAATACAACAGGTCCACAGAATGAGACGGGAGAGGGGAGAGCGAGTTCAAGCATCG
CCGGGAAACCTACTGTCAACACTCGCCATCGAGATAACCCACTGCAGGACGAAAACCCGACGACACTACTAAGTCTGTTA
ACGGATTAAAGCCAAGGCCCATAGACAGAGGCTACCAACCCACACTGCTCACACATGAGCACCAAAAGATAAAGAGTTCC
ACGCAGGTAACAAAAGGATGAAACGCAGGGTAGGAAAGTAATGCTTGAAAAAGAGCCCCCTGGGTGAACACAGGCCTTTC
TTTCTTCTGTCATCTCTTCTTTTTCAGCGAGCCTCCTCACTTTGGCTTGCAGCGCAGATGCGCAACATCCTCGACGCATT
GTTCTTCAGCATGTCCACCCCAGCTCGGAGATCCACCGCATCCTCCTGCTTCAGCAAACCTGCCCAGTAGTACAAGAGAA
CACAAATAGAGAAACTGCATTCAAAAGGAGTTTTGAGACGTCTAAACTCAAA----------------------------
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>chr7B_2352
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---------------------------------------------------------------------GGGCATAACCC
CTTTCCATTACTACGACATAACGGAAATACAACAGGTCCACAGAATGAGACAGGAGAGGGGAGAGCGAGTTCAAGCATCG
CCGGGAAACCTACTGTCAACACTCGCCATCGAGATAACCCACTGCAGGACTAAAACCCGACGACACTACTAAGTCTGTTA
ACGGATTAAAGCCAAGGCCCATAGACAGAGGCTACCAACCCACACTGCTCACACATGAGCACCAAAAGATAAAGAGTTCC
ACGCAGGTAACAAAAGGATGAAATGTAGGGTAGGAAAGTAATGCTTGAAAAAGAGCCCCCTGGGTGAACACAGGCCTTTC
TTTCTTCTGTCATCTCTTCTTTTTCAGCGAGCCTCCTCACTTTGGCTTGCAGCGCAGATGCGCAACATCCTCGACGCATT
GTTCTTCAGCATGTCCACCCCAGCTCGGAGATCCACCGCATCCTCCTGCTTCAGCAAACCTGCCCAGTAGTACAAGAGAA
CACAAATAGAGAAACTGCATTCAAAAGGAGTTTTGAGACGTCTAAACTCAAA----------------------------
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>SNPs
SS----------S----------------------------S--S-----------------------------------
-------S--------S-------S-S-----S---------------S------------------------------S
---------------SSS--SS---------------------------------------------------------S
------S-------------------------------------------------------------------------
-----------------------------------S------------S--S---------------------S------
S-------------------S---------------------------------SSS-----------S-----------
----------------------------S--------S---------------------S---------S----------
--------S---------------------------S----------------S-----------S--------------
--------------------------------------------------------------------------------
---S-----SSS-----------------------------------S-----------------------------S--
-------------------------------S---S--SSSSS----S-----S------S-----S---SSSSS-----
--------S----S-----------------------S-------------S----------------------------
------------------------------SSSSSS-------------S--------------------S---------
--S-----------------------------------------------------------------------------
-------------------------------------------S------------------S-----------------
------------------------------------------------S----------------S----------SSS-
----------------------------------------------------------------S---------------
------------------------------------------------------------------------------SS
SSS------S--------------------------------S-------------------------------SSSS--
------------------S-------------S-------------------------------S------------S--
-----------------------------S----S--------S--------------------------------SSS-
SSSSSS------------------------------S---------------------------S--------S------
----------------------------S----------------------S----------------------------
--------S--------------------------------------------------S--------------------
-------S-------S----------------------------------------------------------------
----------S---------------------------------------------------------------------
--------------------------------------------------------------------S-----------
------------------------S-----------------------------------------------------S-
-------------------------------------------------------------------------S------
-----------------------------------------------------------------SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------
------------S----------S-------------------------------S--SSS-----------------S-
---S------------S-S-----------------------S-----S-------------------------------
-S---S--S--S--S--------S--------------------S--S-S------------------------------
--------------------------------S-----S------S----S----S---S---S-----------S----
----------------S----------S----------S----------S---S--S---S---S----------SSS--
-----------------S---S-----S--------S-------------------------------------------
----------------S----------------------------S------SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS
>forward_597
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-----------------TAAGATGGAGGCAGACCCGA-------------------------------------------
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>reverse_2239
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------------------------------------------------------------------------------GG
AGTGGTTGGATGCCATGA--------------------------------------------------------------
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>forward_1439
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-----------------------------------------------------------CGTCATCGCTCCTCAGGTAC-
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>reverse_3165
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--------------------------------------------TGAATAAGCCGGCCACATGT----------------
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--------------------
