>input_sequence_54305
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----------------------------------------ATGGAGGATACCGCTGCTACACACCGCTATCCCGCCTGGG
TTCTCCTCGAGGAGGATGCCCGCTACGACGACCGCGAGAACGCCACCACCGCCGAAGCCAAGACGAGGGCCGGCCACGTC
GTCAGGGTGACCTTCTTTCTCGCAGACCCGCCGGCCGTCTCCTACTTATGCGTCCACGGCAGCCCCGAACTCAAGCGCGG
GGACTACTCCCTTGAGCCCCGGGTGGTTTTCTCGGAGAAACACCTCGTCCTCCTCCGCTTCGCTTCACCATCGGCCCCTG
TAGCACCTTGGACAATTC---TCTCTCCGAATACTTCGTCTACAGAGCCAGCCCTGGCAAGCCTTCGCTTAGGCGGATCC
CGACCGCCACTCGTCGGCCTGACAAGGCTAGATCGTATCCCGCCATCCTGCCGTTCGCCGACGACGATGACAACTTCCTC
GTCGCCGATCTCGCCCTGACACCGACCCTTGGGCACTATGTCCTCCACACCTTCTCGTCCAAGACGAACAAGTGGACCGC
CAAGCCGTTGCAGTTGCATGCATCTCCGGCCGTGAGGGACGACCTGCCCAGCCTACCCCACAAGGTGATCGCGCTTGGAG
CTGACACCGTAGGCTGGATCGACCTCTGGCGAGGCATCGTCGTCTGCAACGTGTTCGACCCGGACCCCGTTCTCCGCTTC
ATCCCGCTGCCCAAGCCTGGGTTCAACTTGCTGCGGCAAGGTGACCCGCGGCCATGCCGTGACGTCGCCTTCCATGATGG
GCTTATCAAGTTCGTCGAGGTGGAGCATTTTGAAAGACCCGCTAGTCCCGACAGCGACGACGACGATGAGACGAATTTCA
AGACGACCGCGGATCTTGACGACGTAGATGTCATCCATGATTCGGAGCTCTACTTCAAGAGCTATGCACATCTAATGGAA
GATGAACCCGGTTATGTCTCTGATGGCTGGAAGATACGGACATGTTACAGGCATGCTTCCTGGGACCATTGGCGCAAGGG
TCACAGCGTCCATGTCGATGACATCTTGGTCAACAACCCGATGCACCAAATGATGCTGCCTGCGCTGTGGGATGGTACCG
CGCGAAAATACACATTGAGGAGTCTGACGACAGTTTGCCCGACACTCACGATCCATGGTGGGGATGTTGTCTACCTTGTT
CCTATGGTGGAGGTTGGCAAGGGCTCCTTGCTTGGTGTCGACCTTGGCAAGAAGACAGTGGAAGTAGTTGAACCATACTC
TGCCGGGAGATTTGGCCTGCACCTTGCCCTTGCCTGTACATTCTCCGGTTATCTCAATACAACTCCAAGGCATGTTTTTT
TATGTACGAAATGA------------------------------------------------------------------
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>chr4D_1_TraesCS4D01G285500
GAGCATCGTGCTAACCGAGGAGAGGTCAGCCAAGGAGGTGACGTAGCAGGAACGGTGCAATGCAGAGCGCCCCTTGGCGT
TCGTGAAGTCCGACGAGGTGTCGGCATGGGTCCTCGCGGACCCCAACCTCGAGGAGGCCTGGGCACCGGCCACAACATGA
GGATGACCTTCTGCTGATGGAAATCATAGGATTTGTTGGCTGCCTACTAGCTGCTTACATGGTGCGTGCATGGTTTTTAA
TCTCATGGCTGGATCCTCATTTGAATCGTGCATGCTTGCATCATCTTTGTTGTGTCAGTGACTGCTCGGTGGGATCAGTT
TGCTCATTTCTCTTTGTTTGATATAGTTTTGGTTATGTATGACTTTGACTTTTGCTCGTCGTGATTTTGTGTATGTATGT
TAGTTTGGTTTGTGTGCATCATAATTATGCATAGACCGGATATGTATTTATTATGAGTTAATAAACACGTCCTTTATAAA
AAAACGAGACCTATTGGGATGCCTATGAAAATGGTTATTAATGTCCTTTTTTTGAAGTCATTTTCACAATTATACTCTTT
TATTTTCTATAAAAAGTAAAATCAATTCTTCTGAGGGTAAAAATAAAATCACATGACATACTATACGTTAGGGGCCACTT
GGCGGCAAGCCGCATGTCGGCTTTTTTTTTTGTTTTGAGAAAGTCGGCTGCAAATAATAGGCAACGGGTGAATACAAGCC
CAAACAAAGCGAACAATAATATACTCCCTCCGTTTTAAAATAGATGACTCAACTTTATACTAATTTCAATACAAAATTAA
TACAATGTTGGGTCATCTATTTTGAACGGAGGAGTAATTCCTATTACCTTCACCAAGCGAGCCGAATACAAGCCCAAATC
GGGGTCCGGCCGCACGGCGCTATAATAAATCGCTCGTGCTTAATGGAAAAAAAAAGCCAAAATCAATTGCTCGTCGTCTC
GATTTGAGAGGTGCCCCAAATCCGATCTGCGCCAGTTATCATGGAGGATACCGCTGCTACACACCGCTATCCCGCCTGGG
TTCTCCTCGAGGAGGATGCCCGCTACGACGACCGCGAGAACGCCACCACCGCCGAAGCCAAGACGAGGGCCGGCCACGTC
GTCAGGGTGACCTTCTTTCTCGCAGACCCGCCGGCCGTCTCCTACTTATGCGTCCACGGCAGCCCCGAACTCAAGCGCGG
GGACTACTCCCTTGAGCCCCGGGTGGTTTTCTCGGAGAAACACCTCGTCCTCCTCCGCTTCGCTTCACCATCGGCCCCTG
TAGCACCTTGGACAATTC---TCTCTCCGAATACTTCGTCTACAGAGCCAGCCCTGGCAAGCCTTCGCTTAGGCGGATCC
CGACCGCCACTCGTCGGCCTGACAAGGCTAGATCGTATCCCGCCATCCTGCCGTTCGCCGACGACGATGACAACTTCCTC
GTCGCCGATCTCGCCCTGACACCGACCCTTGGGCACTATGTCCTCCACACCTTCTCGTCCAAGACGAACAAGTGGACCGC
CAAGCCGTTGCAGTTGCATGCATCTCCGGCCGTGAGGGACGACCTGCCCAGCCTACCCCACAAGGTGATCGCGCTTGGAG
CTGACACCGTAGGCTGGATCGACCTCTGGCGAGGCATCGTCGTCTGCAACGTGTTCGACCCGGACCCCGTTCTCCGCTTC
ATCCCGCTGCCCAAGCCTGGGTTCAACTTGCTGCGGCAAGGTGACCCGCGGCCATGCCGTGACGTCGCCTTCCATGATGG
GCTTATCAAGTTCGTCGAGGTGGAGCATTTTGAAAGACCCGCTAGTCCCGACAGCGACGACGACGATGAGACGAATTTCA
AGACGACCGCGGATCTTGACGACGTAGATGTCATCCATGATTCGGAGCTCTACTTCAAGAGCTATGCACATCTAATGGAA
GATGAACCCGGTTATGTCTCTGATGGCTGGAAGATACGGACATGTTACAGGCATGCTTCCTGGGACCATTGGCGCAAGGG
TCACAGCGTCCATGTCGATGACATCTTGGTCAACAACCCGATGCACCAAATGATGCTGCCTGCGCTGTGGGATGGTACCG
CGCGAAAATACACATTGAGGAGTCTGACGACAGTTTGCCCGACACTCACGATCCATGGTGGGGATGTTGTCTACCTTGTT
CCTATGGTGGAGGTTGGCAAGGGCTCCTTGCTTGGTGTCGACCTTGGCAAGAAGACAGTGGAAGTAGTTGAACCATACTC
TGCCGGGAGATTTGGCCTGCACCTTGCCCTTGCCTGTACATTCTCCGGTTATCTCAATACAACTCCAAGGCATGTTTTTT
TATGTACGAAATGAAACAAATCTGTCAAACTAACTGTCTGCTTTGCTCGACGGCATTTGACATCTTTGATTTCTTACTAT
TTGCTTCAGGCCATGTGCGCTGGAAGACGGCTGTGATCAGAATTATCGGCTGAATGTTCATCTTACATCGGAGTATACAT
CAGAGTGCAGTACTCAAGATGATCAGGTATGCGGCAGTCCACCTTTCAAGTTGTGCATGTGTCCCGTTTTTTAGCTGTAA
TCAAAAAATAATTATTATCTCTTTATGGCCGGCAACCCAGCAAGACACGCAGGCTGTAGATGGTTACGAAAGGAGTTCTG
CTCAACACCGTGATTACATACACCCAAGCTACAACATGTACCCTG-CCATGCCGCAACACAATTTGCCTCCACCAGCAGG
GCCAGGTAAGAACATTACCCACACTCGTGAGTTGCAACATGGTGTTATCCTCTCTTTCTTGGATGTGATATACATTGTGA
CTTACCAACATTGCTTTCTTGATTGAAGGATATGTT------GTGAACGCCCATCCGACGTACCCGGTGCTGCACCATGA
CACCCATGGCCAACTATGGCTCTCCACGCCGCTGGATAACCGCTTCCACCCGCACTTGTCTCCGGTGCCAACGTACCCGT
CTATGCCCTCCAACACAATGAA---GCCTCCGATGCCGCTGGATGGTGGTCGCTTCCATGCACAACTGCCTCCTTCGTTG
CCGGCTTACCCGGATGCACCCTTCGACCCAAGGACGCATCCAGTGTGGACACGAGGACCCACGTATGTACCCTTCGCACA
ACCACAGTCGTTCTTGCCTCCTGCAAGGCATGCTAATGGTTTTTATTAACATTTTGTAACTACTGATATCCGTGACAATT
GATTGATAATCAATCTCCTATACAAATTTAGCATATAGATTCATAACAATCAATATATGAGTAGTTCACCACAAGGAATA
TGTCAATTTATGATTAAAATATAATGACAGCGACCAACCTAATCATAAGTCTAGAAACGTTTTG
>chr4B_849
TTCAG---------------------------------------------------------------------------
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-----------------------------------------------------CAAGCAAGCCGAATACAAGCCCAAATC
GGGGTCCGGCCGCACGGCGCTATAATAAATTGCTCGTGCTTAAAGGAAAAAAAAAATCAAAATCAATTGCTCGTCGTCTC
GATCTGAGAGGTGCCCCGAATCCGACCTGTGCCAGCTATCATGGAGGATACCACTGCTACACACCGCTATCCCGCCTGGG
TTCTCCTCGAGGAGGATGCCCGCTACGACGACAGCGAGAACGCCACCACCGCGGAAGCCAGGACGAGGGCCGGCCACGTC
GTCAGGATGACCTTCTTTCTCGCGGACCCGCCGGTCGTCTCCTACTTCTGCGTCCACGGCAGCCCCGAACTCAAGCGCGG
GGACTACTCCCTTGAGCCCCGGGTGGTTTTCTCGGAGAAACACCTCGTCCTCCTCCGCTTCGC-----CATCGGCCCCCG
TAGCACCGTGCACAACGGCAATCTCTCCGAATACTTCGCCTACAGGGCCAGCCATGACAAGCCTTCGCTTAGGCGGATCC
CGACCGCCACTCGCCGGCCGGACAAGGCTAGATCGTATCCTGCCATCTTGCCGTTCGCCGACGACGATGACAACTTCCTC
GTCGCCGATCTTGCCCTGACACCGACCTTGGGGGACTATGTCCTCCACACCTTCTCGTCCAAGACGAACAAGTGGATCGC
CAAGCCGCTGCAGCTGCAGGCATCTCCGGCCGTGATCGGCGACCTGCCCAGCCTACCCCACAAGGTGATCGCGCTTGGAG
CTGACACCATAGGCTGGATCGACCTCTGGCGAGGCATCGTCGTCTGCAACGTGTTCGACCCGGACCCCGTTCTCCGCTTC
ATCCCGCTGCCCAAGCCCGGGTTCAACTTGCTGCGGGAAGGTGACCCGCGGCCATGTCGTGACGTCGCCTTCCACGATGG
TTTTATCAAGTTCGTCGAGGTGGAGCATTTCGAAAGACCCGCTAGTCCTGACAGCGACGAC------GAGACGAATTTCA
AGACGACCGCTGATCTTGACGACGAAGATGTCATCAATGATTCGCAGCTCTACTTCAAGAACTATGGCCATCTAGTGGAA
GATGAACCCAGTTATGTCTCTGATGGCTGGAAGATACGGACATGTCACAGGCATGCTTCTTGGGACCATTGGCGCAAGGG
TCACAGCGTCCATGTCGACGACATCTCGGTCAACAACCCGATGCACCATATGGTGCTGCCTGGGCTGTGGGATGGTGGCG
CGCGAAAATACACACTGAGGAGTCTGACGACAGTTTGCCCGACACTCACGATCCATGGTGGGGATGTTGTTTACCTTATT
CCTATGGTGGAGGTTGGCAAGGGCTGCCTGCTTGGTGTCCACCTTGGCAGGAAGACGGTGGAATTAGTTGAACCATTTTC
TGATGGGAGATTTGGTTTGCACCTTGCCCTTGCATGTACATTCTCCGGCTATCTCAATACAACTCCAAGGCATGTTTTTT
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>chr4B_2387
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---------------------------------------------------------------------TTTCTTAATAA
TTGCTTCAGGCCATGTGCGCTCGAGGACGGCTGTGATCAGAATTATCGGCTGAATGTTCATCTTACATCGAAGCATATAT
CAGAGTGTAGTACTCAAGATGATCAGGTATGCCGCAGCCCACCTTTCAAGTTGTGTATGTGTCTGGTTTTTTAGCTGTAA
TATATTTTTTA--ATTATGTCTTTACGGCCGGCAACCCAGCAAGACATGCAGGCTGTAGATGGTTACGAAAGGAGTTCTG
CTCAACACCATGATTACATACACCCAAGCTACAACATGTACCCTTCCCATGCCGCAACACAATTTCCCTCCACCAG---G
GCCAGGTAAGAACGTTGCCCACGCTTGTGAGTTGCAACATGGTGTTTTTCTCTCTTTCTTGGATGTGATGTACATTGTGA
CTTACCAACATTGCTTTGTTGATTGAAGGATATGTT------GTGAACGCCCATCCGACGTACCCGGTGCTGCACCATGA
CACCCATGGCCAACTATGGCTCTCGACGCCGCTGGATAACCGCTTCCACCCGCACTTGTCTCCGGTGCCAACGTACCCGT
CTATGCCCTCCAACACAATGAT---GCCTACGATGCCGCTGGATGGT---CGCTTCCATGCACAACTGCCTCCTTCGTTG
TCGGCTTACCTGGATGCACCCTTCGACCCAAGGACGCATCCAGTGTGGACACGAGGACCCACATATGTACCCTTCGCATA
ACCACAGTCGTCCTCGCCTCCTGCAAGGCATGCTAATGGTTTTTATTAACATTTTGTAACTACTGATATCCGAGACAATT
GATCGACAATCAATCTCCTATACAAATTTAGCATATAGATTCATAGCAATGAATATACGAGTAGTTCACCACAAGGAATA
TGTTGATTTGCGATTAAAATATAATGACAATGACCAAACTAACCATAAGTCTGGGAACATTTT-
>chr4A_2652
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--------------TACGTACACCCAAGCTACAACATGTACCCTGCC-ATGCCGCAACACAATTTGCCTCCACCAG---G
GCCAGGTAAGAACATACCCAT-GCTTGTGAGTCGCAACATGGTGTTGTCCTCTCTTTCTTC-----GATGTACATTGTGA
CTTACCAACATTGCTTTGTTGATTGAAGGATATGTTTACCCGGTGAACTCCCATCTGACGCACCCGGTGCTGCACCATGA
CACCCATGGCAGACTATGGCTCTCAATGCCGCTAGATAACCGCTTCCACCCGCACTTGTCTCCGGTGCCAACGTACCCGT
CTATGCCCTCCAACACAATGACGATGCCTCTGATGCCGCTGGATGGT---CGCTTCCATGCACAACTGCCTCCTTCGTTG
TCGGCTTACCCGGATGCACCCTTCGACCCAAGGACGCATCCAGTGTGGACACGACGACCCACATATATACCCTTTGTAGA
ACCACAGTAGTTCTCGCGTCTTGCAAGGCATGCTGATGGTTTTTATTAGCATTTTGTAACTACTGATATCCGTGACAATT
GATCGACAATCAATCTCCTATACAAATTTGGCATATAGATTCATAGCAATGACTATACGAGTAGTTCACCACAAGGAATA
TGTTGATTTATGATTAAAATATAATGACAATGACCAAACTAACCATAAGTCTAGGAACGTTTT-
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S---------------------
------------------------------S------------S-----------SS-----------------------
---S-------------S-------S---S-----S----------------S---------------------------
--------------------------------S-------------------S-------S-------------------
------S----------------S----------S------------S--------------------------------
---------------------------------------------------------------SSSSS----------S-
-------S--S----SSS--------------------S------S-------S--S-----------------------
-------------S-----S--------------------S------S--------------------------------
-----------S---------------S-S---S------------------------------------------S---
-------S-----S----S----------------SS-S-----------------------------------------
--------S-----------------------------------------------------------------------
-----------------S------------------S-------------------S-----------------S-----
SS----------------------------S-----------------S------------SSSSSS-------------
----------S-------------S----------S--------S---------------S-----SS------S-----
---------S-----------------------------------S-------------S--------------------
------------------S-------S---------------------S---S---------S-------------SS--
--------------S-------------------------------------------------------S------S--
-------------------------S-S-----------S---------S------S------S------------SS--
--SS-----------SS----------------S--------------S-------------------------------
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S--S
---------------------S--S---------------------------------------------S--S---S--
-------S------------------------S----S-----------------S-------SS---------------
-SS-SSSS-S-SS-----S------S---------------------S--------------------------------
---------S------------------------------------------------------------------SSS-
----------------S-----S--S--------------------S----------------------S----------
-----------------S--------------------------------------------------------------
------------------------S-------------------------------------------------------
---------------------S-------------------------SSS------------------------------
S-------------------------------------------------------------S---------------S-
--------------S-----------------------------------------------------------------
---S--S--------------------------------------S----S------S----------------------
---SS------------------------SS------S----S-----------S--------S
>forward_321
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-------------------------------------------------------------CTGCTCGGTGGGATCAGTT
T-------------------------------------------------------------------------------
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>reverse_2186
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-------------------------CCTTGCTTGGTGTCGACCTT-----------------------------------
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>forward_325
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-----------------------------------------------------------------TCGGTGGGATCAGTT
TGCTC---------------------------------------------------------------------------
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>reverse_2188
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---------------------------TTGCTTGGTGTCGACCTTGG---------------------------------
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>forward_719
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-----------------------------------------------------------GGCAACGGGTGAATACAAGC-
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>reverse_2365
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--------------------------------------------GCTCGACGGCATTTGACATC----------------
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