>input_sequence_54272
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------------------------------------------------------ATGAAGCTTCTCCCGCGCCTCTGCAT
GGCCACCAGCAGCGCCGCCGCCGCGGGCGACAGCGACGCCAGCAGCAACAAGCTCGCCTCGGTCGCCTCCACCTCCTCCT
CCACCGTCTCAACCTCCTCCTCCGCCGCCGCGGCCGCGGTCTCCGAGGCGTCCTCCTCCACGTCCCTCCCTTCGCTCTCC
ACCGCCACGTCGAATGCCGCCT------------CCTTCGCCCACGTCGCCACGCTCCTCCCTCCGCCCACGGC------
---GGCGTCGGCGGCAGCGGCCGTCGCGGTGGTGGACGTCTCCCGCGGCTTCGTCGTCGCCAGGCCGGCGTCCGTCGCCC
TTCACGACCTCGGCACCCTCGAGCCGACGTCCACCTCCGACCCGGGCCACGACACCGCGACCGCCGGCTCGGTCAAGTGC
GTGGCGCACGTCCACGGTGGCAAGGCCGTGACGGGCCACCAGGACGGGAGGCTGCGCCTGTGGCGGGTCTCTTCGCGCGC
GCCCGCCCGGATCCGCCTCGCCGCCGCGCTCCCCACGGTCTCCGACCGCCTCCGCCGGTTCCCGCTCCCGTCCAACCACG
TCGCCGTCCGACGCCACCACCGCCGGCTCTGGATAGAGCATGCCGACACCGTGTCCGGCGTCGCCGCGTCCACGGACGGC
CGCCTCCTCTTCTCCGTCTCCTGGGACAAGACGCTCAAGGTCTGGGCCATCCCGTCCCTCCGCTGCTTGCAGTCCTTGCC
GGCGCACGACGATGCCGTCAACGCGGTCGCCGTCGCCCCCGACGGCACGGTGTACACCGGCTCCGCCGACAGGCGCGTTC
GTGTCTGGGCGCCCAGGCCCGCGTCCGACAAGACCACCAAGCGTCAGAGCAAGAAGCCGGTTTACTACCTGGCGGCCACC
CTCTCCCGCCACACGGCGGCGGTGAACGCCGTGGCCGTCGGGTGCGGGGGGCAGGTGCTCTACTCCGGCGGCAACGATCG
CTGCGTGGTGGTGTGGGAGCGGGAGGACAGCGCGAGCCACATGGTCGCGATCGGGGCGCTTCGGGGGCACCGCAAGGCGG
TGCTCTCCATCGCGAGCACGGGGGGCGGGCTGGTTGTGAGCGGGTCGGCGGATCACACGGTTCGGGCCTGGCGGCGCGAG
ACGGACGGACGTGGCCACACGTGCGTCGCCGTGATCGACGGGCACGGCAGCGCCGTCCGTTCGGTGGCGGTGGCTCTCGT
TCCGGGCAAGAAGCAGCTGCAGGGGGGAGAAGACGGCGATGACGGCGGCGAGGAATGGAGGGTGTGCAGCGCCAGCTTTG
ACGATGAGGTGCGGGTCTGGTCGTTGCGGGTGACGACGGGTTTGTAG---------------------------------
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>chr2A_1_TraesCS2A01G324000
GGCGGAATAAAGACATAAATGGACACGCTTAAATTCCCATTTTTATAATGAGAAACTTTATGGCAGAGGGCTATCCCTTT
CTTT-TTCTTTTCAGACGAAGCTGTGCCGTCCCTTTGAGA--------------------GGCTGCGCCGTGACATGTTT
TATCCCTAGCCTGGTAGGGCTAGGCAGAAGCGTCCCACGTTCCGAGTCCCGGTGATTTGACATGGGAAGGAGCCAAAAAG
CA---------------------------GAGCTTCCGTCTAGTGCCACGCTTTACCCATACACACTGAAGCCATCCATC
GAC-------------------ACCTCTGATTCTACTACAGGCGCAC---------------------------------
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----------------------------------------------ATTGCGTATCAGGAATGCAGGATGAGGCCAGAAT
CAGCTAGCGGTCCTTCTCCTGACGGAGAGCAACTCGCCAACCGTCTCCGCTCGACGCCGGAGCACGCTCTGTTCATCGAA
AGAGAAGCGGAAGATGCCGCCGTAGTACAGTG--CTGCACTGCATATGCATTTCCCCGATGAGAGCGAGATTGCTGCGTG
ATTGGTCCCTCCGTGTGGCTCTAACGCTGGTTCTGCAAGCACATTGCGTATCAGGTTGAGAGACCGAGATTCCCACGCAA
AAATGAAAATAAAAATTACTGTGCTAGGATCACCGGCG--CTCACCCTGACGGAAACAGGCTCTGCTCAT----------
----------------------------------CGAAAGATGCCGCTGTACCGTGCTGCATTACCCCCTGCCACAGGTG
AAAGCGAGATTGCCGCGTGTGTTTGGTCCCAGGTTGATGCCCGATCGCTGGCTGTATCGGTCGGGCAGCAGGCCTCTCGG
TCGCGTCGCACGTTGACGCGAGGCG------------------------------GCCG--------CCCCGACACCTTG
CCACGGGCTGTCAAAGCGAGCACTGTGCCGACGGGTCGCCTCCGAGCCTCCGTAG---------------TCCGCATTGC
AGAGTCGCGACTCACGCGTGGCAACCCGGA----AACCCGCGCGCTCCGCG-TACAAATAGGCCCCCCGCCCGACCGCGA
ACCCAGCACGACCTTCCATTCCACCCGAGCAG--CCGCGCCGCCTCCCCGATAGATGAAGCTTCTCCCGCGCCTCTGCAT
GGCCACCAGCAGCGCCGCCGCCGCGGGCGACAGCGACGCCAGCAGCAACAAGCTCGCCTCGGTCGCCTCCACCTCCTCCT
CCACCGTCTCAACCTCCTCCTCCGCCGCCGCGGCCGCGGTCTCCGAGGCGTCCTCCTCCACGTCCCTCCCTTCGCTCTCC
ACCGCCACGTCGAATGCCGCCT------------CCTTCGCCCACGTCGCCACGCTCCTCCCTCCGCCCACGGC------
---GGCGTCGGCGGCAGCGGCCGTCGCGGTGGTGGACGTCTCCCGCGGCTTCGTCGTCGCCAGGCCGGCGTCCGTCGCCC
TTCACGACCTCGGCACCCTCGAGCCGACGTCCACCTCCGACCCGGGCCACGACACCGCGACCGCCGGCTCGGTCAAGTGC
GTGGCGCACGTCCACGGTGGCAAGGCCGTGACGGGCCACCAGGACGGGAGGCTGCGCCTGTGGCGGGTCTCTTCGCGCGC
GCCCGCCCGGATCCGCCTCGCCGCCGCGCTCCCCACGGTCTCCGACCGCCTCCGCCGGTTCCCGCTCCCGTCCAACCACG
TCGCCGTCCGACGCCACCACCGCCGGCTCTGGATAGAGCATGCCGACACCGTGTCCGGCGTCGCCGCGTCCACGGACGGC
CGCCTCCTCTTCTCCGTCTCCTGGGACAAGACGCTCAAGGTCTGGGCCATCCCGTCCCTCCGCTGCTTGCAGTCCTTGCC
GGCGCACGACGATGCCGTCAACGCGGTCGCCGTCGCCCCCGACGGCACGGTGTACACCGGCTCCGCCGACAGGCGCGTTC
GTGTCTGGGCGCCCAGGCCCGCGTCCGACAAGACCACCAAGCGTCAGAGCAAGAAGCCGGTTTACTACCTGGCGGCCACC
CTCTCCCGCCACACGGCGGCGGTGAACGCCGTGGCCGTCGGGTGCGGGGGGCAGGTGCTCTACTCCGGCGGCAACGATCG
CTGCGTGGTGGTGTGGGAGCGGGAGGACAGCGCGAGCCACATGGTCGCGATCGGGGCGCTTCGGGGGCACCGCAAGGCGG
TGCTCTCCATCGCGAGCACGGGGGGCGGGCTGGTTGTGAGCGGGTCGGCGGATCACACGGTTCGGGCCTGGCGGCGCGAG
ACGGACGGACGTGGCCACACGTGCGTCGCCGTGATCGACGGGCACGGCAGCGCCGTCCGTTCGGTGGCGGTGGCTCTCGT
TCCGGGCAAGAAGCAGCTGCAGGGGGGAGAAGACGGCGATGACGGCGGCGAGGAATGGAGGGTGTGCAGCGCCAGCTTTG
ACGATGAGGTGCGGGTCTGGTCGTTGCGGGTGACGACGGGTTTGTAGTAGGTTGGATTTGCTACGATTTTTGACGTTGGA
AAGAGTGT------TTTCCTGATTTTTGATCTGATCTTGATAGCTGAGATAGAGATACGTACGGTCGTGTACATACAGGA
AAGAGGTAATTTATCTACCTGTATTTTTTGGACTTCGGCGGAGCTTCTTGTGGTGAATCCAATACACGTCG---------
---------------CCTCTTTTAGCCATTTACCCTATGGGATTGTAAATCTCAGCCCGCCAGTAAGACTTAACCTATGT
TGATGAAATCCTACATAGG------------GATCCATGCAATTTTTTTTAGTTTCTTTTTAAATTGTTACATGTTATGT
CACTTGATTTAGACTTGATTAAGTCTCAAATCGACTGAAACTTAGCCACATTCTTTACCCTAAGATTGACACGAAGGTTC
TCAACTATTAAAAATGGAAAAGTAAGAAAATAAAAGAAAACAAGTCGCCTCCATTAGATCGGCTCCAAGCCATGGTTCCC
CTTGTGTAGCTCCAGCGGGCTATCGAAA-CTCATATCCGGTTGTTGAGGGCCTCTTCCGCTTCCCCCTCCCCCTTGTCGC
CATTGTAGGGCAATGTTGAGGTCGTCTTGTGGCATGAAAGCGTAGGATATAGAAGTCTTGGGGAGGGTTTAGCGTCACGA
TTTGGGTCCAATGGCCACGGGGCTATGCTCTAGTGAGTCAAGGTTGCTAGGCTACACGGCAATCGTGGCCGAGGAGATGC
CCCCTACCTCCCACAGGCCGCTACCACCAGTGAGCATCATTGGACAAAGCCCACAAAATGTAGGGCCTTCCTCTAGTGTC
GTGACATGGGAGTTGGCGCAT-GGTGACGATTCTTACCCTTTGATTGGCAGTGATCAGGGTCATACCGGCAGATTGGAGG
ACTGACGTGACTAGCTCTAGCACGGGGATGATGTCC----TCAATGGTTTGTGGCGCGGTTGTTCGATCGTGGTGGCTTG
CATTGGTGG-------TCGGGTGGCGTGAGGTGGCGCGCGTGAGACTTAATGGCTCCCCTCC
>chr2B_5
----GAATAAAGACAGAAATGGACATGCTTAAATTCCCATTTTTATAATGAGAAACTTTATGGCCGAGAGCTCTGCCTTT
GTTTCTTCTTTTCAGACGAAGCTGTGCCGTTCCTTTGAGATTTAGAGGGGAAGAAAAAGAGGCTGAACCGTGACATGTTT
-ATTCCTAGCCTCGTAGGGCTAGGCAGAAACGTCCCACGTTTCGAGTCCCGGTGATTTGACATGGGATGGAGCCAAAAAG
CAGAGCTTCCGTCGAGTGCAACGCTAGCAGAGCTTCCATCGAGTGCAACGCTTTACCCATA---------GCCATCGATG
CCCCGAACTTGAGCGATT-----------------CTACAAGCGCACTAGATCATGATTGACGCGCGTTGCTGCGCCCAT
TCATTTTTTCAATAGAGTGGTACTAATTTTACAAATAGACATGGAATAACTGAATTTCTATTTCAGTAAAAAAAAAATCG
GAATCTACGCTAATATTTATAATTTTATATACTCTCTCCGATCCAAAAAATTGTTGTGACTTTAGTTCAAACTTGAATTA
AGGGCCTGTTTGGTTCCAAATAAGTCACCAACTTATAAGTCGAAAAGTGAAAAAAATGACTTATTTTGCCAAACGGACCC
GACTTATAAGTCACCCCATGTCATAAGTTGCTCCACCCCAACTTAAAACTTATAAGTCACCCCCTTTTGTGTGGGTCTCA
CAATCTGCATGATGTTGATTGGTGTGGGAAGGTGTGTCAGGTGACTTATAAGTCAGGTGACAACCAAACAGGCGTGACTT
ATAAGTCACTGGTTTTAAGTCACCTGACTTATAAGTCAAGTGACTTATTGAAACCAAACAGGCCCTAAAGTCGCAACATT
TTTTTTGGATCGGAGGGAGTAACTACCATCTTGCATTTTTTTCCGTGTCACATTGACCATCCTCTTAGTTCTATGTCTAC
CACGGTTTTTCTAGCATCTCATAAATCGGATCATAAATCTACAACATAAGCATTTCATGACCATGAATGTGCCAATAGGT
GATCGCACATGGAAAGTGAGAAGAAATGGCACTCCATGAAACTGATGACTATACTAATCTAGACAAAGCTTCTCAGCAAT
ACACATCAAAAAATAAGTAGTCTGGCATCCTTACAAAGTCCTATTTTCTCTTACTTACATACTACCTCCATCCTGATTTA
TTGGTCCCCATTGTATTCCGTGCCAAATTTTAAACAAAAAATTGACTAAAAAGTATTAATGCATGTCAAAAAAATTATAT
CGTTGGATTAGTATTTGAACATAGTTTTCAATGATATAATTTTTTGTCACATGCGTGGATATTTTGTTAGTTAAATTTAT
GGTCAAAATTTAGCACGGAATACAATGGGGACCAATAAACCAGGACGGAGGTGGATGAGCTCCTTCAACCGTTGGTGCAT
TGGATACTCCCAATGCTTGGCCCTTTATATTTTTATAGGAAAAACGATAGGTGGAAGTACTACATAGACAGAACCAAAAT
GCAACCATGACCATTCTGTTCAGATCAATACAAATGAAAATGTTGTATAAATAAAAGTCCAAGACACTACAAATACTATT
TGGTGAGCCATGTGGCCACACTTGATCATGTACATTACAAACTTAACTATACAAAAACTATGCAAAGATGAGCATACATT
CTTCTTACCAAGGAAGAAGCTACATAATCAATGTCAACATTAGTTGGTTCCGCGCATGTACAGAAATCACCGACATTAAT
GCGAACTTTCGCAGCTCTTGTGCCTCTTTGATATTGTACATCAATCATAAGTCCTGCAAGAGTCAAAACACATTTGTGGT
CAAAATAGGAACACCTTCTGAGCAATTCACATACAGAAATTCCAACAGCCGTACCTCTCTAGAAGCCATGATCCCAGTTC
TTGGTCAGGCACACCTTCCGAGCAATTCCAAATTCCAATACAGAAATTACAAACAAACAAGCACAACCCCTGAAACAAGC
AACACTAAGTCAGCTGGGCTAGATATGGGAACATCTACGATATCACATGGACGAAGAAGGATCGCTAACTAATACAGAAC
TAAGCAGCTAACATGGTTGAAAAACGTCGGGAGGTCTCGATGGAAGGCAGAGGGGGTATAGCTCCATTTTGCCTTTCAGA
CTGTAGAAAGCGGTCACCTGATCGATAAAAAAATCAATGCGGGTAAGATTGATCACATCTAATGCATAATCTCTTAGTAG
TACGTGCATGTGGGAGTGACAAATAAACAAGAACATTTAAAGGAGAAAAAAAGCGTAGCAACTATTTCTTCAGAGAAAGA
AGTGCTCGCTTGGGCAAATGAACACATTGTATTACACCATGGCCATGCTTATGGACCGAACACCAGGAAAGAATAAAATA
CCGTAAGACACACAACGAGCCTACCGTTGTCCTCTTCTTGGACCCCTTCTGGTCTGCTGGGGAGAGTCGACGTCATCTGC
CAGGGCGTATCAGTGCCAACATGAAGGATGTTGCGTGCTTGAACAGCTCCATCCAAGGCAACAGAATAACAAAAAATATA
CCATTAGCTAGACAATTCTTCAAATTGACTTGAACCAAATAATTTGGGATCTTTTATGGATGTGCTATCAGTTTGAAGTT
TGAGCCCAAAGGTACGGAACAGACACAAAAAAGAGGCAGAAAATGATTGCATATGCGTAGCTCAGTGAGGAAATCCAGTC
CATGGAATTGGAATCAGCGGGGCGTGAGCCGCACACACCTGCGTAGAGCCGGGGATAGGTCGCCGCTCTGGTTCTGTTGC
TTTGTCTCTCTCCTCGCTCAAGGAGAAGTTGGGATGGGCTAGGTCCAGCGGCAACGGGTTCTCATTACCGATTGAGAAAA
GGGGCAGTGTTGGGAGAAGCATACGCCGTCAAGGTGGATGACCTGCGAGCCGGTGGCGGCGGCGGACCTTGGATCCGCCC
AAGGTTGAGATCGCCAGAGAGGAGAGGTCGGCAGGACTACTTGGGAGGGATGGGTCCACTCGTCTATCCCCTCGCGTTGG
ATCCCCTCGTGGCGCGTCGGCTGGATCCGTTCCACGAGGGTGTAATGGATCCCTCGAAGCCCAGGAAGTAGAATGGGCTG
GCGGACGAGCCCAGTTTACCAGAGGCCGTCGTTTCGGCCCGTGGAGCAGCAGGCCATAGGACAGCTGGGCCAGAATTGAC
ACAGTGCGGAACAGACTGGTCTACGTAGAAGATCTGACGGCCAGAAACAGTCCAATCACAAAAACGGACAGCTGTAAACG
CAAATCGCTGTGAGGGCAGGAATTAGGTGCGGTTATACTGTCCTTAATTGCGTATCAGGAATTCAGGAGGGAA-CAGAAT
CAGCTAGCGGTCCTTC--CTGACGGAGAGCAACTCGGCAACCGTCTTCACTTGGCGCCGGAGCACGCTCTGTTCATCGAA
AGTGAGGCGGAAGATGCTGCCGTACGGGGCCGCACTGCACTGCAT-----TTCCCCCGATGAAAGCGAGATTGCTGCGTG
CG------------------------------------------------------------------------------
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-----------------TGATTGA--TCCCAGGTTGATGCCCGATCGGTCGCTGTATCGATCGGGCAGCAGGCCTCTCGG
TCGCGTCGCACGCTGACGCGAGGCGACCGCGACTTGCATGCCGGTTAGCCTGCACGCCG--------CCCCGACACCTTG
CCACGAGCTGTCAAAGCGAGCACTGTGCCGACGGGTCGCCTCCGAGCCGAACCGTCCCAGCCAGG-------CGTATTAC
AGAGTTGCGACTCGCGCGTGGCAACCCGGA----ACCCCGCGCG---CGCG-TACAAATAGGCCCCCCGCCCGGCCGCGA
ACACGGCACGACCTTCCATTCCAATCGAGCCGACCCGCGCCGCCTCCCCG----ATGAAGCTTCTCCCGCGCCTCTGCAT
GGCCACAAGCAGCGCC---GCCGCGGCCGACAGCGACGCCAGCAGCAACAAGCTCGGCTCGGTCGCCTCCACCTCCTCCT
CCACCGTCTCCACGTCCTCCTCCGCCGCCGCCGCCGCGGTCTCCGAGGCGTCCTCGTCCACGTCCCTCCCGTCGCTCTCC
GCCGCGACGTCGAATGCCGCCTGCCGCGCCGCCGCCTTCGCCCACGTCGCCACGCTGCTCCCTCCGCCCACGGCGGCGGC
CGCGGCGTCAGCGGCAGCGGCTGTCGCGGTGGTGGACGGCTCGCATGGTTTCGTCGTCGCCAGGCCGGCGTCCGTGGCCC
TCCACGACCTCTGCACCCTGGAGCCGACGTCCACCTCCGACCCGGGTCACGACACCGCGACCGCCGGCTCGGTCAAGTGC
GTGGCGCACGTCCACGGAGGCAAGGCCGTGACGGGCCACCAGGACGGGAGGCTGCGGCTCTGGCGAGTCTCCTCGCGCGC
GCCCGCCCGGATCCGCCTCGCCGCCGCGCTCCCCACGGTCTCCGACCGCCTCCGACGCTTCCCGGTCCCGTCCAACCACG
TCGCCGTCCGCCGCCACCACCGCCGGCTCTGGATAGAGCACGCCGATACCGTGTCCGGCGTCGCCGCGTCCACGGACGGC
CGCCTCCTGTTCTCCGTCTCCTGGGACAAGACGCTCAAGGTCTGGGCGATCCCGTCCCTCCGCTGCTTGCAGTCGTTGCC
GGCGCACGACGATGCCGTCAACGCGGTCGCCGTCGCGCCGGACGGCACGGTGTACACTGGCTCCGCCGACAGGCGCGTTC
GTGTCTGGGCGCCCAGGCCCGCGTCCGACAAGACCACCAAACGACAGAGCAAGAAGCCGGTTTACTACCTGGTGGCCACC
CTCTCCCGCCACACGGCGGCGGTGAACGCCGTGGCCGTCGGGTGCGGGGGGCAGGTGCTGTACTCCGGCGGCAACGATCG
CTGCGTGGTGGTGTGGGAGCGGGAGGACAGCGCGAGCCACATGGTCGCGATCGGGGCGCTGCGGGGGCACCGCAAGGCGG
TGCTCTCCATCGCGTGCGCGGGGGACGGGCTGGTTGTGAGCGGGTCGGCGGATCACACGGTTCGGGCCTGGCGGCGCGAG
ACGGACGGACGGGGGCACACGTGCGTCGCCGTGATCGACGGGCACGGCAGCGCTGTCCGTTCGGTGGCGGTGGCTCTCGT
TCCGGGCAAGAAGCAGCTGCAGGGAGGAGACGACGACGGCGAG------GAGGAATGGAGGGTGTGCAGCGCCAGCCTTG
ACGGCGAGGTGCGGGTCTGGTCGTTGCGGGAGACGACGGGTTTGTAGTAGGTTGGATTTGCTACGATTTTTGACGTTGGA
ATTTGGAAAGTGCGTTTCCTGATTTTTGATCTGATCTTGATAGTTGAGATAGGGATACGTACGGTCGTGTACATACAGGA
AAGAGGTAATTTATCTACCTGTATTTTCTGGACTTCGGCGAA-CTTCTTGTGGTGAATCCAATGCACATTG---------
---------------CCT--------------------------------------------------------------
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>chr2D_36
-----------------------------------CCCATTTTTATAATGAGGAACTTTATGGCCGAGAGCTCTGCCTTT
GTTTTTTCTTTTCAGATGAAGCTGTGCCGTTCCTTTGAGTG-----GGAGAAAAAAGAGAGGCTGCACCGTGACATGTTT
TATTCCTAGCCTCGTGGGGCTAGGCAGAAACGTCCCACGTTCCGAGTCCCGGTGATTTGACATGGGATGAAGACAAAAAA
AAG-----------------------GCAGGACTTTCATCGAGTGCAACGCTTTACCCATACACACTGAAGCGATCGATG
CCCCGAGCTTCGATCTGGTTGGACCTCTGATTCTACTACAGGCACAC---------------------------------
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----------------------------------------------ATTGCGTATCAGGAATGTAGGATGAAGCCAGAAT
CAGCTAGCGGTCCTTC--CTGACGGAGAGCAACTCGCCAACCGTTTTCGCTGGACGCCGGAGCACGCTCTGTTCATCGAA
AGAGAAGCGGAAGATGCTGCCGTACGT-GCCGCACTGC-------ATGCATTTCCCCGATGA------------------
------------------------------------AAGCACATTGCGTATCAGGTTGAGAGATTGAGATTCCCACGCGA
AAATAAAAATAAAAATTACTGTACTAGGATCAGCGGCCTTCTCCCCCTGACGGAAACAACTCGCCAAACGTCGCCCGTGG
CAGGGAGCACAGGCTCTGTTCAACGAAAGAGAAGCGAAAGATGCCGCTGTAC--TGCTGCATTACACCCTGCCACCGGTG
AAAGCGAGATTGCTGCCTGATTGA--TCCCAGGTTGATGCCCGATCGCTCGCTGCACCGATCGGGCAGCAGGCCTCTCGG
TCGCATCGCACGTTGACGCGAGGCGACCACGA-----------------CTGCACGCCGCCCCGAGTCCCCGACACCTTG
CCACGAGTTGTCAAAGCGAGTACTGTGCCGACGGGTCGCCA--------AACCGTCCCAGCCAGGAGCGCTCCGTATTGC
AGAGTCCCGGCTCGCGCGTGGCAACCCGGAGAGTAACCCGCGCG---CGCGTTACAAATAGGCCCCCCGCCCGGTCGCGA
ACCCAGCACGACCTTCCATTCCAATCGAGCAG--CCACGCCGCCTCCCCA----ATGAAGCTTCTCCCGCGCCTCTGCAT
GGCCACCACCAGCGCC---GCCGCGGGCGAAAGCGACGCCAGCAGCAACAAGCTCGCCTCGGTCGCCTCCACCTCCTCCT
CCACCGTCTCAACCTCCTCCTCCGCCGCCGCGGCCGCGGTGTCCGAGGCGTCCTCCTCCACCTCCCTCCCTTCGCTCTCC
GCCGCCACGTCGAATGCCGCCT------------CCTTCGCCCACGTCGCCACGCTCCTCCCTCCGCCCACGGC------
---GGCGGCCGCGGCAGCGGCTGTCGCGGTGGTGGACGCCTCCCGCGGCTTCGTCGTCGCCAGGCCGGCGTCCGTGGCCT
TCCACGACCTCTGCACCCTGGAGCCGACGTCCACCTCCGACCCGGGCCACGACACCGCGACCGCCGGCTCGGTCAAGTGC
GTGGCGCACGTCCACGGAGGCAAGGCCGTGACGGGCCACCAGGACGGGAGGCTGCGGCTGTGGCGGGCCTCCTCGCGCGC
GCCCGCCCGGATCCGCCTCGCCGCCGCGCTCCCCACGGTCTCCGACCGCCTGCGCCGATTCCCGCTCCCGTCCAACCACG
TCGCCGTCCGACGCCATCACCGCCGGCTCTGGATAGAGCACGCCGACACCGTGTCCGGCGTCGCCGCGTCCACGGACGGC
CGCCTCCTCTTCTCCGTCTCCTGGGACAAGACGCTCAAGGTCTGGGCCATCCCGTCCCTCCGCTGCCTGCAGTCGCTGCC
GGCGCACGACGATGCCGTCAACGCGGTCGCCGTCGCTCCCGACGGCACGGTGTACACCGGCTCCGCCGACAGGCGCGTTC
GTGTCTGGGCGCCCAAGCCGGCGTCCGACAAGACCGCCAAACGACAGAGCAAGAAGCCGGTTTACTACCTGGTGGCCACC
CTCTCCCGCCACACGGCGGCGGTGAACGCCGTGGCCGTCGGGTGCGCGGGGCAGGTGCTGTACTCCGGCGGCAACGATCG
CTGCGTCGTGGTGTGGGAGCGGGAGGACAGCGCGAGCCACATGGTCGCGATCGGGGCGCTGCGGGGGCACCGCAAGGCGG
TGCTCTCCGTCGCGTGCGCGGGGGACGGGCTGGTTGTCAGCGGGTCGGCGGATCACACGGTTCGGGCCTGGCGGCGCGAG
ACCGACGGACGGGGGCACACGTGCGTCGCCGTGATCGACGGGCACGGCAGCGCCGTCCGTTCGGTCGCGGTGGCTCTCGT
TCCGGGCAAGAAGCAACTGCAGGGAGGAGACGACGGCGATGACGGTGGCGAGGAATGGAGGGTGTGCAGCGCCAGCTTTG
ACGGCGAGGTGCGGGTCTGGTCGTTGCGGGTGACGACGGGCTTGTAGTAGGTTGGATTTGCTGCGATTTCTGACGTTGGA
AAGTGTGT------TTTCCTGATTTTTGATCTGATCTTGATAGTTGAGATAGAGATACGTACGGTCGTGTACATACAGGA
AAGAGGTAATTTATCTACCTGTAATGTTTGGACTTCGGCGAA-CTTCTTGTGGTGAATCCAATGCAGGTCGCCTGAAACT
TATCGGCACAAGTTACCTCTTTTAGCCATTTACCCCACGGGATTGTAAATCTCAATCGGATGAACTTAACCAAGTCTGAG
TCGATGCTATATTCATAAGATGTTGTGTGGAGATTCGTGCAAACTTTTTTAGTTTTTTTTCC-----TTACATGTTACGT
CACTTGACTAAGACTTGG------------TCGACCGAGACCTAGCCACATTCTTTACC-TAAGATTGACACGAAGGTTC
TCAACCATTAGAAATGAAAAGGTAAGAAAATAAAAGAAAACAAGTCACCTCCATTAGATCAACCCGAAGCCATGGCTCTC
CTTGTGCGGCCCCAGCAGGCTATCAGGAGCTCATATCCGGCTGTCGAGGGCCTCGTTCGCTTCCCCTTCTCCCTTGTCGC
CATTGTAGGGCAACGTCGAGGTCGTCCCGTGGCACGGAAGCGTAGGATACAAAAGTCCTGGGACAGGTTTGGCGTCCCGA
TTTGGGTCCAATGGCCGCTGAGCTATGCTCTAGTGTGTCGGGGTTGCTAGGCTGTTTGGCGACCGTGGTGGAGGAGATGC
CCCTACCTCTCG-CAGGGCGCCACCACCAGTGAATATCGTTGGACAAAGCACCCGAATGTG-GGGCCTTCCTCTAGTGTC
GTGACACGGGAGTTGGCGCAAAGGTGACGATTCTCGTCCTTGACCGGG-AGTGATCAGGGTCATACCGGCAGATTGGAGG
ACCGATGTGACTAGCTTTGGCACGGGGGTGATGTCCCAGATCAATGGTTTGTGGCGCGGTGGTTCGATCATGGCGGCACG
TCATGGTGGTTTGCAATCGGGTGGCGTGAGGTGGTGCGTGTGAGACTTAATGGCTGCTCTCC
>SNPs
SSSS-----------S---------S--------------------------------------S---S---S-S-----
S-----------------------------S-----------------------------------S-------------
---S--------S----------------S-------------------------------------S------------
-------------------------------------S--S-----S-----------------------------S--S
SS------------------------------------------------------------------------------
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-----------------------------------------------------------------------S--------
----------------SS----------------------------S----S----------------------------
-----------------S------SSSSSSS-------------------------------S-----------------
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------SS-------------S-
----S-----------------S---------S----S-----S--------------SSSSSSSSSSSS----------
----------------------------------------------------SS-----------S---------S----
-------------S--S--SS-SSSS-----------------------S---------S--------------------
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-----S------------------------------------------SSSSSSS-------------------S-----
-------------S------------------------------SSS--------------------------S------
-----------------------SS-------------------------SSSS--------------------------
----------------SSS-------------------------------------------------------------
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S-------------------------------------------------------------------------------
---------S-----------S----------------S------------------------------------S----
-S---------S-------S------------------------------------------------------------
-----------------S--------------------------------------S--------------S--------
---------------------------------------------------------S----------------------
----------------------------------------S---------------------------------------
--------------------------------------------------------------------------S-----
------------------------------------S-------------------------------------------
----------------------------------------S--S----------------------------S-------
-----------------------------------------------------------S--------------------
------------------------------------------------------------S-------------------
--------------S--S------S-------------------------------------------------------
-----------S--S-----------------------------------------------------------------
------------------------S-----S--------------S----------------------------------
---SS---------------------------------------------------------------------------
---S---------------------------------------S------------------------------------
----------------------------------------S-S--------------------S----------------
-----------------------------------S-S----------------SS-S-SSSSSSSS-SSS--SSSSSSS
-SSSSSSSSSS-S----S----------------S-S-----SS-----------S----SSSSSSS----------S--
-------S-S-------SSSSSSSSSSSSS-----S--S--S-----------------S--------------------
-----S----S-----S---S-------------------------S-------------SS-S-S---------S--S-
------SS--S-----S-------SSS-------------S---S---------S-S---------S--S----------
-------------S--S---------SS------S-S------------S-S-----S----SSS-----S-----S---
----------------S-S-S--------------S---SS------------SSSS---S-S-----SS----------
---SSS-SSS-SS----S---S-----------SS---S-----------S-S-S--SSSSS------------------
------S-------------S-------------SSS----SSSSS--S-------------------------------
--S--S----------S-S--------S--------------------------------S--------S---S---SS-
SSS-------------------------------S---S----------------S-S----
>forward_3525
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-----------------------------------------------------------------CGAGATTGCTGCGTG
ATTGG---------------------------------------------------------------------------
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>reverse_5004
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-------------------------------------------TCAGAGCAAGAAGCCGGTTT-----------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------
>forward_3554
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------GTGGCTCTAACGCTGGTTCT----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------
>reverse_5664
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------ACACGTCGCCTCTTTTA
GCC-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------
