>input_sequence_54256
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------------------------------------------------GCCCGTT-GAGATCGGCGACATGGT-AGCGGC
GCCGATGCCCCCGTCGCCGCCGGCGATCTCGCCGGCGCGGCTGCACAAGCTGGTGACCGCGCAGGCGGACCCGCTCCTGG
CGCTCGAGCTCGTCAACGTCACCTCCCCGACCACCACGCCGCACCCGGCCACCCTCCACGCGCTCCTCCTCGGCCTCTCC
CGCCGCCGCGACCACCTCCCCCACGCGCTCGCCCTGCTCCGCCGCCTCCCGTCCCCGCCCTCCCCGCGGCTCCTCCTCCC
GCTGCTCCTCTCCGTCCTCCGCCTCCGCC---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------GCCCGCCC
CACCTCTTCCTGTCCACCTTCAACACCCTCTTCGTCGCCGGCCCCAGCCCCCTGTCGCTCCACCCGCAGCTTCTCCTCCG
CCTCCTCTCCGCCCTCTCCTCCACCGCCGCCTACTTCCCCTCCGCGCTCCACCTCCTCCGGCTCGTCTCCTCGCGCCTCC
CCCTGCCGGCGCCGCTCGTCCTCGCCTCTCACAACCTGCTCATCGAGGCCGCCGCCCGCTCCGGCCACCTCGCCGTGTCC
CTCTCGCTCTTCCACCGCCTGCGCTCCCTCCACGTGTCGCCAGACGCCCACACCTACCGCATGCTTACCCAGTCGCTCTG
CCGCCGCGGCCAGGTCCGCACTGCCACTACCCTGCTCGATGAAATGCTGCACAGGGGCATCCCTGCCGATCCTCTGGCAT
ACACCACCGTGCTCAACGCCCTCTGCCGCAAGAAGCAGCTCCGCGAGGCCTACCGATTGCTGTGCCTCATGCGAGGCCGC
GGGGTCTCGCCTGACATTGTGCACTACAACACCGTCATCGTCGGAATGTGCCGTGAGGGGCGGCCACTGGATGCCTGCAA
GGTGATCGGTGATATGACGGATAGTGGCTGCATACCGAATGCAGCGTCGTATGCAGCGGTGGTGAATGGGTTGTGCGTGA
GTGGGTTGTTTGACAAGGCAGAGACATACTTGGAAGATATGATGGGTAAGGGGATTGTACCACATTTTTCGGTGTTCCAT
TCGGTGATCAAGGGGTGTTGCACAGTGGGAAAGGTAGAGGAGGCTGCTAGGATGATGAGTCGGATGCTTGATCTTGGGAT
GCCTCCACATGTTGAGACATGGAGTTCAGTGATCAGCAGTATTTGTAATGACGAGGACTATGTTGAGGTGATTTTGTTGC
AAATGATGAAAGGAAGGGGGCGCTGCCCGAACACGATCTCGGGGAGTACCTTGTGATGATGTTGCGTGGTGTGGTGACAG
AGATTTAAGAAGCAATCAATTTGTAGTTT---------------------------CTCATTTTTGGTGATGATATAAAC
AATCAGCCTTGCT-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------
>chr5D_1_TraesCS5D01G326300
TTTTAAAAATTTAATCAAGTATTTTAAAAA-ATGTTGGTCATGTATC-AAAAAAATGTTAATCATATATTTTAAAA-ATG
TTAAACATGTATAAATAAAA--TCCTG-ATATACCGAAAATGTACAATGTGTATGAAAAAAGTAGTCATTGGACACAAAT
TTCAGAAAATGTTAATCATTTTTTTAAATGT-TAC-----------AAAAAATGTTCCTGATGTATGAATAAAATGTAG-
AACATGTATTAAAGAAAACAT----AAAACA-TTCAATTTATAAAAGAATTATCGCGTATAATT----------------
-------TTTTT-------TAGTAATCTATTAAAAAATGTTCCTGATATATACAAAAAATGTACAATGTGTATGAAAAAA
GTAGTCATCAAACATAA--TTA--AAAAAATGTTAATCTTATATTTTTATAAATTTTATACAAGTATAAATAAATGTTCT
TGATGTATGCGTAAAATGTACACATGTGTA------------------------------TGAAAAATGTAGACATGTGT
TGAAGAATAAAAGAAAAAACGAAGAAAGACGAGATATGGGGAATCTCGAATGGGCCATGGCTGAAGCCTTAAGACTACTC
AAGATGGGCCATATCCGTCACTGGACTAATTTCTCGATTCCAAAATAGGTTCACGTTGCTATATGGCAACTAGTCCTGGC
CATCTCAGGCCCGGCCCTGTCGGCCCACCCAGGCCCGGCCCTAAAATCCAGGGCCTAGGCCCGATGGGCTTGCCCGTGGG
CCGGGCTTGGGCCTGAGTTATGAGCCCACCAGCAGGGCCTGCACGGGCTTGGGCTTGGCATATTGGCATTTTAAGGAAGA
GGCCCGGCCCTAAGCCCTAAGCCCTAAAGGCTTTTCAGGGCTTTTACCAGATGGGCCGGGCTTGGGCTTGAAAAGTAGGT
CCGATGGGAGGGCCTGGGCCTCAGTTTTCTGCCATGGGCTTTTTCAGGCCCGGCCCATGGCCAGATATAATGGCAACTGA
CTTCCGCAGCAGCCCGGTTCTTCGCTCCATCTCGCCGCCCCCCCCGCTGCCCGTT-GAGATCGGCGACATGGT-AGCGGC
GCCGATGCCCCCGTCGCCGCCGGCGATCTCGCCGGCGCGGCTGCACAAGCTGGTGACCGCGCAGGCGGACCCGCTCCTGG
CGCTCGAGCTCGTCAACGTCACCTCCCCGACCACCACGCCGCACCCGGCCACCCTCCACGCGCTCCTCCTCGGCCTCTCC
CGCCGCCGCGACCACCTCCCCCACGCGCTCGCCCTGCTCCGCCGCCTCCCGTCCCCGCCCTCCCCGCGGCTCCTCCTCCC
GCTGCTCCTCTCCGTCCTCCGCCTCCGCC---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------GCCCGCCC
CACCTCTTCCTGTCCACCTTCAACACCCTCTTCGTCGCCGGCCCCAGCCCCCTGTCGCTCCACCCGCAGCTTCTCCTCCG
CCTCCTCTCCGCCCTCTCCTCCACCGCCGCCTACTTCCCCTCCGCGCTCCACCTCCTCCGGCTCGTCTCCTCGCGCCTCC
CCCTGCCGGCGCCGCTCGTCCTCGCCTCTCACAACCTGCTCATCGAGGCCGCCGCCCGCTCCGGCCACCTCGCCGTGTCC
CTCTCGCTCTTCCACCGCCTGCGCTCCCTCCACGTGTCGCCAGACGCCCACACCTACCGCATGCTTACCCAGTCGCTCTG
CCGCCGCGGCCAGGTCCGCACTGCCACTACCCTGCTCGATGAAATGCTGCACAGGGGCATCCCTGCCGATCCTCTGGCAT
ACACCACCGTGCTCAACGCCCTCTGCCGCAAGAAGCAGCTCCGCGAGGCCTACCGATTGCTGTGCCTCATGCGAGGCCGC
GGGGTCTCGCCTGACATTGTGCACTACAACACCGTCATCGTCGGAATGTGCCGTGAGGGGCGGCCACTGGATGCCTGCAA
GGTGATCGGTGATATGACGGATAGTGGCTGCATACCGAATGCAGCGTCGTATGCAGCGGTGGTGAATGGGTTGTGCGTGA
GTGGGTTGTTTGACAAGGCAGAGACATACTTGGAAGATATGATGGGTAAGGGGATTGTACCACATTTTTCGGTGTTCCAT
TCGGTGATCAAGGGGTGTTGCACAGTGGGAAAGGTAGAGGAGGCTGCTAGGATGATGAGTCGGATGCTTGATCTTGGGAT
GCCTCCACATGTTGAGACATGGAGTTCAGTGATCAGCAGTATTTGTAATGACGAGGACTATGTTGAGGTGATTTTGTTGC
AAATGATGAAAGGAAGGGGGCGCTGCCCGAACACGATCTCGGGGAGTACCTTGTGATGATGTTGCGTGGTGTGGTGACAG
AGATTTAAGAAGCAATCAATTTGTAGTTT---------------------------CTCATTTTTGGTGATGATATAAAC
AATCAGCCTTGCTGAAAACA-AAATGATACAGTGCAAAACATGGACCAAGAAGGCATATTTTCTGTCAAAACGCAACTGC
CGGAGAAAGCAACTTGTTTTGCAAAGGTGAGATCTCTGT-----------------------------------------
------ACTTGAAGCCAGAACAGACAGAAAAGATAGTGCCATACTACTTGGTTGCAAGGTGCGCAAACTGCAAAGTAGGC
GTGGAGCTCATAGTTGAGGAAACAGAGGCTGTCAACCAGTTGGAGTCAAGATCAAGATGCACAGGATCAAGATGCATAGA
GTCCATCCTAGTA---CCTGGTGTGGAGACCTGCTGGATACGGCGTTCTGCTCAAAGGAAGATAGTGGGGCTATATTATG
TGCGATGTGGTCCAGTTGGACAGTATGGAACGGTTGTCACGAC-------GGCGAAGTCCCAATGAAATTAACCTCTGCA
TGCAGGT-GGGCTTGAGATGTTGCTGCAGATCTACTGCATTCAAAGAGAAACAACATGGATCAAGAGAGACAAAAGATGA
ACTCTAAATGGCACCCTCCTGCCCCTGTAGCCGTTAAACTGAATGTTGATGCTGCGTTCAAGGCAACTGATAACCAGGGG
GCTACTGTAGTTGTTATTAGAGATGAAAA---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TGGCAGCCTCATTGCAGCTTGATGTTCCTGGTATGA
TTCCACTCC-TGTTGTGTTGACTGCTGAAGCCTGTGTTTGTGGAGATGGAGCAGCGCTGATGCCTGAGATCTGAATAGGT
GCACAGATGC-TTTCACTTTTGCGTTCAGCAGCGGAAAACACAAATGCTTTCATTTTTGCTGCTGCTGTCGAT------G
ATGCTCATTTACTGCAACTTATTGTAGAATCGAGTTAGGACAGAGACGTGACAGTTTCAAAAGTAAACAACCCTTGTAGC
TAGGTTGATGTTGTTTCTCAAGGTCAGTAGCAAAATACTACCGCTGTCCCAAAATTGAAGTGCAAAAACGTCTTATATTT
TGAGACGGAGGTAGTACATACTTTACCTGTTAAGCATGAGCATGCACATCCTTGC
>chr5B_1
TTTTAAAAAGTTAATTAAGTATTTGAAAAA-GTGTTCGTCATGTATC-AAAAAGATGTTAATCATATATTTATT--TATT
TTAAAAATGTATATAAAAATATTCCTG-ATATACCGAAAATTTACAATGTGTATGAAAAAAGTAGTCATTGAATACAAAT
TTCAGAAAATTTTAATCATTTTTTAAATGTGTCC-------------AAATATGCTCCTGATATATGCAAAAAATGTAG-
AACATGTTGAAAAACAGTAAATATAAAAACA-TTAAATTTATAGAATGTTGATAACGTATAAAAAAATGTAAATTGTATA
CTTAAAAAAATC-------TATT---------AAAAATTTCCCTGATATATAAAAAAAATGTACAATGTGTACGAAAAAA
TTAGTCATCAAGCATAA--TTT--TAAAAATGTTAGTCATATAG-TTTATAAATTTTAAAACAGTATAAAAATCTTTTCT
TTTTGTATGCGTAAAATATACGAATATGTA------------------------------TGAAAAATGTAGACATGTGT
TGAAGAATAAAAGTAAAAAGAAAGAAAGACAAGATATGGGCAATCTCGAATGGGCTATGGCTGAAGCCTAAAGACTACTC
AAGATGGGCCATATCCGTCACTGGACTAATTTCTCGATTCCAAAATAGGCTCACGTTGCTCTAT----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------ATGGCAACTGA
CTTCCGCAGCGGCCCGG-TCTTCGCTCCATCTCGCCGCCCCCA-CGCTGCCCGTTAGAGATCCGCGGCATCGCCAGCGGC
GCCGATGCCCCCGTCGCCGCCGGCGATCTCGCCGGCGCGGCTGCACAAGCTGGTGACAGCGCAGGCGGACCCGCTCCTGG
CGCTCGAGCTCGTCAACGTCACCTCCCCGACCACCACGCCTCACCCGGCCACCCTCCACTCACTCCTCCTCCGCCTCTCC
CGCCGCCGCGACCACCTCCCCCACGCGCTCGCCCTGCTCCGCCGCCTCCCGTCCCCGCCCTCCCCGCGGCTCCTCCTCCC
GCTGCTCCTCTCCGTTCTCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCGCCC
CACCTCTTCCTGTCCACCTTCAACACCCTCTTCGTCGCCGGTCCCAGCCCCCTGTCGCTCCACCCGCAGCTTCTCCTCCG
CCTCCTCTCCGCCCTCTCCTCCACCGCCGCCTACTTCCCGTCCGCGCTCCACCTCCTCCGGCTCGTCTCCTCCCGCCTCC
CCCTGCCGGCGCCGCTCGTCCTCGCCTCCCACAACCTGCTCATTGAGGCCGCCGCCCGCTCCGGCCACCTCGCCGTGTCG
CTCTCTCTCTTCCACCGCCTGCGCTCCCTCCACGTGTCTCCCGACGGCCACACCTACCGCATGCTTACCCAGTCGCTCTG
CCGCCGCGGCCAGGTCCGCACTGCCACTATCCTGCTCGACGAAATGCTTCACAGGGGCATCCCTGCCGATCCTCTGGCGT
ACACCACCGTGCTCAACGCCCTCTGCCGCGAGAAGCAGCTCCGCGAGGCCTACCGATTGCTGTGCCTCATGCGAGGCCGC
GGGGTCTCGCCTGACATTGTGCACTACAACACCGTCATTGTCGGAATGTGCCGTGAGGGGCGGCCACTGGATGCCTGCAA
GGTGATTGGTGATATGACGGATAATGGCTGCATACCGAATGCAGCGTCGTATGCAACGGTGGTGAATGGGTTGTGCGTTA
GTGGGTTGTTTGACAAGGCAGAGACATACTTGGAAGATATGGTGAGTAAAGGGATTGTACCACATTTTTCGGTGTTCCAT
TCGGTGATCAAGGGGTGTTGCACAGTGGGAAAGGTAGAGGAGGCTGCTAGGATGATGAGTCGGATGCTTGATATTGGGAT
GCCTCCACATGTTGAGACATGGAGTTCAGTGATCAGCAGTATTTGTAGCGACGAGGACTATGTTGAGGTGATTTTGTTGC
AAATGCTGAAAGGAAGGGGGTGCTGCTCGAAGACGATCTCGAGGAGTACCTTGTGATGATGTTATGTGGTGTGGTGGCAG
AGATTTAAGAAGCAATCAGTTTGTAGTTCCTCATATTTTTTGAAGGCTTGTAGTTCCTCATTTTTGGTGATGATATAAAC
AATCAGCCTTGCTGAAAACACAATGGC-ACAGTGCAAATTGTGGACCGCAAAGGCATATTTTCTGCCAAAACGCAACTGC
CGGAGAAAGCAACTTGTTTTGCAAAGGTGAGATCCTGGTCGTAGATCATCGAAGGGCAGCTACCGCGGTGGTGATCACAA
TGCTTCACTTGAAGCCAGTACAGACAGAAAAGATAGTCCCATACTACTTGTTTGCAAGGTGCACAAACTGCAAAGTAGGC
GTGGAGCTCATAGTTGAGGAAACAGAGGCTGTCAACCAGTTGAAGTGAA---------------GATCAAGATGCCAAGA
GTCCATCCTAGTG---CCTGGTGTGGAGACCTGCTGGATACGGCGTTCTGCTCAAAGGAAGATATTGGGGCTATATTATG
TGGGATGTGGTCCAGTTGGACAGTACGCAATGGTCGCCACCAC-------AGCGAAGTGTGAATGAAATTAACCTCTGCA
TGCAGATGGGGCTTGAGATGTTGCTGCAGATCTACTGCATTCAAAGAGAAACAACATGGATCAAGAGAAACAAAAGATGA
ACCCTAAATGGCACCCTCCTGCTCCTGGAGTCGTTAAACTGAATGTTGATGATGCGTTCGAGGCAACTGATAACCAGGGA
GCTACTGGAGTTGTTATTAGAGATG-AAA---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TGGCAGCCTCATTGCAGTTTGATGTTCCTGGTATGG
TTCCACTCC-TGTCGTGTTGACTGCTGAAGCCTGTGCTTGTGGAGATGGAGCAGTGCTGATGCCTGAAATCTGAATCGGT
GCAAAAATGCTTTTCACGTTTGCGTTCAGCAGCGG-AAACACTAATGCTTTCATTTTTGCTGCTGCTATCGATGCACGAG
ATGCTCATTTACTG-------------------------------ACGTGACAGTGTCAAACGTAAACAACCCTCGTAGC
TAGGTTGATGTTGTTTCTCAAGGTCAGTAGCAAAATACTACCTCCGTCTCAAAAT-------------------------
-------------------------------------------------------
>chr1D_3
--TTAAAAATTGAACATA--ATTTTTAAAAATTGTTGATCGTGTATCAAAAT--ATGTTAATCATATGTTCCAAAA-ATG
TTAACCGTGTATAAAAACTGTTCCTGATATATACCGAAAATGTACAATGTGTATGAAAAA-GTAGTCATCAACCAGG---
---AAAAAAAATTAGTCATCTATTTCAAATATATTATTTGTGTACAAAAAAATGCTCCTGATGTATATGAAAAATGTAAA
AACATGTATTAAAGATTTGAACATATAAATA-TAAATTTTAAA-AAAGTTCACCATGTAT-AAAAAATGTTAATCACATA
TTTTAAATTTTC-------TAAACATGTTTCAAAATTTGTTCTTGCTATATACCAAAAATGTACAATGTGTCTGAAAAAA
GTAGTCATCAAACATAAATTTT--TAAAATTGTTAATTACATAT-TTCAAAAATATTAAACATGTATAAACAAATGTTCT
TGATCTATGTGTAAAATGTACAAATGTGCATGG-------------------------------AAATGTAGACATGCGT
TGAAGAAAAAAAG-------------------------------------------------------------------
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-------------------------------------------------------
>chr5A_5
----AAAAAGTTACTCAAGTATTTGAAAAAAATGTTGATCATGTAACAAAAAAAATGTTAATCATATATTAAAAAATATA
TTAAACATGAATAAAAAATGTTTCAGATATATACCAAAAATGTACAATGTGTATGAAAAAAGTAGAAATCAAACACAAAT
TTCAGAAAATGTTAATCGTGTTTTAAAATGTGTAC-----------AAAAAATGCTTCTGATGTATGCAGACAATTTAC-
AGGATGTATTAAAAAATTAATCATGAAAAAACTTAAATTTATA-AATGTTGATCATGTAT-AAAAAATGTAAATGATATA
CTTAAAAAATGTGAAAAATTAAT---------TAAAGATGTCCTCATATATAAG-AAAATGTACAATGTGTATGACAAAA
GTAGTCATCAAACATAA--TTTTTAAAAAATGTTAATAATATAT-TAAAAAAATGTTAAACAAGTATAC-AAACTTGTCT
TGATGTATGCGTAAAATTTACAAATATGTATGAAAAATGTGGACAATTTTTTCGAGAACTTGAAAAATGTAGACATGTGT
TGAAGAATAAAA----AAACGAAGAAAGACGAGATATGGCAATCTCT-AATGGGCCATGGGCGGAGCCTAAAGACTACTC
AAGATGGG--------------------------------CAAAATAGGCTCACGTTGCTATATGGCAACTGACTTCGNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------------------------------------
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----------TGTCCACCTTCAATACCCTCTTCGTCGCCGGCCCCAGCCCCCTGTCGCTCCACCCGCAGCTTCTCCTCCG
CCTCCTCTCCGCCCTCTCCTCCACCGCCGCCTACTTCCCTTCCGCGCTCCACCTCCTTCGGCTTGTGTCCTCCCGCCTCC
CCCTCCCAGCGCCGCTCGTCCTCGCCTCCCACAACCTGCTCATTGAGGCCGCCGCCCGCTCCGGCCACCTCGCCGTGTCG
CTCTCGCTCTTCCACCGCCTGCGATCCCTCCACGTGTCGCCAGACGCCCACACCTACCGCATGCTTACCCAGTCGCTCTG
CCGCCGTGGTCAGGTCCGCACTGCCACTACCCTGCTCGACGAAATGCTGCACAGGGGCATCCCTGCCGATCCTCTGGCGT
ACACCACCGTGCTCAACGCCCTCTGCCGCAAGAAGCAGCTCCGTGAGGCCTACCGATTGCTGTGCCTCATGCGAGGCCGC
GGGGTCTCGCCTGACATTGTGCACTACAACACCGTCATCGTCGGAATGTGCCGTGAGGGGCGGCCACTGGATGCCTGCAA
GGTGATTGGTGATATGACGGATAGTGGCTGCATACCGAATGCAGCGTCGTATGCAGCGGTGGTGAATGGGTTGTGCGTGA
GTGGGTTGTTTGCCAAGGCAGAGACATACTTGGAAGATATGGTGGGTAAAGGGATTGTACCACATTTTTCGGTGTTCCAT
TCGGTGATCAAGGGGTGTTGCACAGTGGGAAAGGTAGAGGAGGCTGCTAGGATGATGAGTCGGATGCTTGATCTTGGGAT
GCCTCCACATGTTGAGACATGGAGTTCAGTGATCAGCAGTATTTGTAATGACGAGGACTATGTTGAGGTGATTTTGTTGC
AAATGCTGAAAGGAAGGGGGCGCTGCTCGAAGACGATCTCGAGGAGTACCTTGTGATGATGTTGCGTGGTGTGGTGGCAG
AGATTTAAGAAGCAATCAGTTTGTAGTTCCTCA---------------------------TTTTTGGTGATGATATAAAC
AATCAGCCTTGCTGAAAACA-AATGAC-GCAGTGCAAAATGTGGACCACGAAGGCATATTTTCTGCCAAAACGCAACTGC
AGGAGAAAGCAACCTGTTTGGCAAAGGTGAGATCCTGGTCGTAGATCATCTAAGGGCAGCTGCCGCGGTGGTGATCACAA
TGCTTCACTTTAATCCAGTACAGACAGAAAAGATAGTCCCATACTACTTGGTTGCAAGGTGTGCAAAATGCAAAGTAGGC
GTGGAGCTCATAGTTGAGGAAACAGAGGCTGTCAACCGGTTGGAGTCAAGATCAAGATGCACAGGATGAAGATGCCAAGA
GTCCATCCTAGTAGTACCTGGTGTCGAGTCCTGCTGGATACAACGTTCTGCTCAAAGGAA--------------------
---GATGTGGTCCAGTTGGACAGTACGCAATGGTCGCCACTAGGGTCCAGGGCGAAGTCCCAATGAAATTAACCTCTGCA
TGCAGGT-GGGCTTGAGATGTTGCTGCAGATCTACTGCATTCAAATAGAAACAACATGGATCAAGTGAGGCAAAAGATGA
ACTGTAAATGGCACCCTCCTGTTCCTGGAGCCGTTAAACTGAATGTTGATGCTGCGTTCAAGGCAACTGATGACCAGGGA
GCTATTGGAGTTGTTATTAGCGATG-AAAATGGGAGAGCGGCGATTTGGTGCTGGGGCTCAGATGAGCCCGGGCGTGAAC
AGTACCGCGATTTGAAAGGGAAAAGAAGTTCATAAAATTCTAATTTTTTTTGGGTGCAAGATGCTCCTGTGCATGAACTC
CGTGCAAAATTTTGTGAAGTTTGGACATTCGAGGAGCTCGTGGCAAAAGAGACAAATTTCGGATGTTTGAGAAACTTTTG
AAATCGCACTGTTCACGCCTGATTTTTTTTTTGCCACGAGCTCCTCGAGTGTCCAAACTTCACAAAATTTTGCACGGAGT
TCACGCACAGGAGCATCTTGCACCACAAAAGAAATTGAAATTTTCTGAATTTTTTTTCTTTTTAAATTGCGGTACTGTTC
ACCGGCTCATCTGAGCCTGGCTCTGGGTTGAATTATCCTGAAAATGGCAGCCTCATTGCAGCTTGATGTTTCTGGGATGA
TTCCACTCCTTGTTGTGTTGATTGCTGAAGCCTGTGCTTGTGGAGATGGAGGAGCGCTGATGCCTGAAATCTGAATATGT
TCACAATTGC-TTTCACTTTTGTGTTCAGCAGCGGAAAACACAAATGCTTTCATTTTTGCTGCCTCTATCGATGCACGAG
ATGCTCATTTACTG-------------------------------ACGTGACAGTGTCAAACGTAAACAACCCTCGTAGC
TAGGTTGATGTTGTTTCTCAACGTCACTAGCAAAACACGACCTCCGTCTCAAAAT-------------------------
-------------------------------------------------------
>chr4A_1191
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
CGCTGCCGCGACCACATTTCCCACGCGCTTGCCCTGCTCCGCCGCCTCCCATCCCGGCCCTCCCTGCGGCACCTCCTCCC
ACTACGCCTCTCCGTCCTCCGCTTCCGCC---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------GCCTGCCC
CACTTCTTCCTGTCCACCTTCAACACACTCTTCGTCGCCGGCCCCAGCCCCCTATCGCTCCACCCGCAGCTTCTCCTCTG
CCTCCTCTCCTCCA----------CGCCGCCTACTTCTCGTTCACGCTCAATCTCCTCCGGCTCATCTCATCCCGCCTCC
CCATGCCGGCGTCGCTCGTCCTCGCCTCTCACAACCTTCTCATCGAGGCCGCCGCCCGCTCCGGCCACCTCGCCGTGTTG
CTATCGCTCTTCCACCGCCCATGCTCCCTCCACGTGTCGCCAGACGCCCACACCTTCCGCATGCTTACCCAGTCGCTCTG
CCGCTGCGGCCAGGTCCACACTACCACTACCCTGCTCGATTAAATGTTGCACACGGGCATCCCTGCCGATCCTCTGCCAT
ACACCACCATACTCAACGCCCTCTGCCGCAAGAAGCAGCTCCGAGAGGCCTACCGATTGATGTGCCTCATGCGAGGCCGT
GGGGTCTCGCCTAATATTGTGCACCACAACACTGTCATTGTTGGAATGTGCC----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------
>SNPs
-----------------------------------------------------------------------S--------
---------------S---S---------------------------------------------------S--------
------------------------------------------------------S------------S-S----------
----------------SSS---------------S--------S--SSS-S---S-------SS----------------
---------------------S-S--S-S-S-------------------------------------------------
---------------------S----------------S-----S-------------S-----------S---------
----------------------S---------------------------------------------------------
-------------S--------------------------S----------------------------S----------
-------------------------------------------------S---------------------SSSSSS-SS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------
----------S------S------------------------SS------------------S---S---S-S-------
---------------------------------------------------------S----------------------
----------------------------------------S------------------S-S---------S--------
--------------------------------------------------------------------------------
----------------------S---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------S--------------------------------S-------
-------------------------------------------------------------------------------S
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------S-------------------------------------------------------------------------
-----------------------------------------S-------S------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----S--------------------S----S---------S----------------------------------S---
------------------S---------S---------------------------------------------------
-----------------------SS-SS-----------SS-------S----------------S--------------
----------------------------------SSS-------------------------------------------
------------------S------------------S------------------------------------------
---------------------------------------------------------------------------SS---
----------------------------------------------------------------S---------------
--S----------------------S-S--S---S-S---S---------------------------------------
--------------------------------------------------------------------------------
----------------------S----S---------------------------------------------------S
-------S-----------------S------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------S------------------------------S------------
-----S-------------------------------------------------------------S------------
--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S-----S------------S-----
------------------------------------------S-S---S------SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_936
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------AGGGCTTTTACCAGATGGGC------------------------
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-------------------------------------------------------
>reverse_2832
--------------------------------------------------------------------------------
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-------------------------------CACGATCTCGGGGAGTACCT-----------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>forward_972
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------AAGTAGGT
CCGATGGGAGGG--------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------
>reverse_3401
--------------------------------------------------------------------------------
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----------------------------------------GACGGCGAAGTCCCAATGAA--------------------
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-------------------------------------------------------
