>input_sequence_54112
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----------------------------------------ATGCTGGGGCTAGAGCTAACTGGTCTCGCTCCGGCCACCT
CGCCATGCTCTCCAGCAAATCCCGGCATGTGAAAGTTCTCGCCGTCCCTGCCTCCAGCTCCCAAGGCAACTCCAACAATA
ACATCAGCCAACATACAAAACTAAGGTTCTTGTAAATGAAACTATTTCCCATCCATTGGTATTTGGTATTCCCTCCGTCC
CATAGTATAAGAGCATTTTTTTAATATAGTGTAAAAAACGCTCTTATATTATGGGACGGAGGGAGTAGAACATTAATCTC
GTCAA-------ATAGCTTCATATATTTGTGGTTTCTTTCATAAAA----TTAAATTAGGACGGACAAGTTCTTCGAAGT
GGAGATGGCCGTCCATGAGAACGAACTTGACGAGTATGGAGTTGTTAACAACGCCATTTATGTTGCTTACATCCACAACG
GTTGGGACCAAAATGATGTTTGTTTGCAGTAGAGTTCGGGTTCTTTACCCTTTATGTACACAATCTTGATTCTTACTTTA
AATTGTCTGCAGCTCGAGAGGATCTGGCTGCGAGCATTGGCTTCAGCATGGCCTCCATAGCACGCACCGGCAACGCGATG
GCACTTCTGGAGCTGAACCTCAAGTACCTCAAGCCTCTACGAGTATGTACACACATGCTCCCTCTATTCTAATTTAATTA
AAGTTTAAGATTTATCCTAGGTCAAACTTAACTATATTTAACCAAATGTATAA-AAAATGTGCTAACATTTATTGAACAT
AAAATATGTATAGTATGCAAATATATATTATGATGAAACTAATATGTGTCGTAGATATTGATGTATCTTTCTATAGACTT
TGGTCAAAGTTTGTAACAAGTTTGACTGAGGACAAAGCTAGGACTCCAATTAATTTGCAATGGATAAAGTATGTCGCATC
CGAAACCTCTGAGACCGG--------------------------------------------------------------
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---------------------------------------------------------AAATCTCAAGTTTTTCAGTTCCC
GAACTCTAAAATAGAA-AGATTTAGTAA----CCACACTCTCTATGCGCATTTGATTAATGTGCAGCGAGGTGCCAAGTT
TGTCGTCAAGGTTAGGATTGTCCAAATAAAGGGCGCGAGGATACTCGTTGATCACTTCATCGAGACGCTGCCGGATCATA
AGGTG-------AAGCAATTGGTATTTCTCAACATGAACGCGCCATGTCCTTTATACTGATAAATCTCAAACACGCACTA
TTGATCAATCCC--ACACACACTC--ATGCTGGTCTCCTCTAATGGCAGCTTGTATTGGAAGCGACAGCGACCATCGTCT
GCCTCAACAAGGACTACCGTCCGACCCGCGTCTTCCCAGAGATGTCATCTAAGCTGCATCAGTTCTTCTCATCCAAGGAT
GGTTAG--------------------------------------------------------------------------
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-----------------------------------------------------------------
>chr3B_1_TraesCS3B01G034200
CATAACACTCTACAAAGTTTTGCAGATATAGTAAGACTACTACATACATGGACACTTATAAAACCATTAATTATGACACA
AATTCATCTCTAGCACAATATGATAGTTTATATTTGTTTAAATTTGAAGTGAGAGCCATCATAAGAAAAAGCTTAAATAA
TGCAAACTAAATTACTAAAATGAAACAACTAACCATAAAACAAAATTTACTTTAGCATAACAGAGTGTACTTGTAATAAA
ATTATTAGAATTGTATGATATATATTCATTTCAGAAGTTTATTATTAGCGATAGGGGCAGAGCCATCATATACTCGAGGT
GAACTCAATGAAATTAGTCAAATCCCATCAAATGACTATACTTATTTATTGTTTGCATTGAAAAATTTATATGCACTACA
TTATGAAACCGAATGGAGTTTAATTTAACCCTTAATTTACAACATAACATACCCAATTATGAAAAACTTCTAATTAGCCC
TATTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGGGCATCTGTTCCATGTGGCAAGAATGAAACGGCACA
CACGTACACTATATATAGGCGGGCACCATGAGACCAAACAATACAATTCCATGTTCATCATGCACCGCCCTCCTACTAAT
ATCGCTCCCAATACCCACCACCCACCACCTTGCTTGGTCCATGCTGGGGCTAGAGCTAACTGGTCTCGCTCCGGCCACCT
CGCCATGCTCTCCAGCAAATCCCGGCATGTGAAAGTTCTCGCCGTCCCTGCCTCCAGCTCCCAAGGCAACTCCAACAATA
ACATCAGCCAACATACAAAACTAAGGTTCTTGTAAATGAAACTATTTCCCATCCATTGGTATTTGGTATTCCCTCCGTCC
CATAGTATAAGAGCATTTTTTTAATATAGTGTAAAAAACGCTCTTATATTATGGGACGGAGGGAGTAGAACATTAATCTC
GTCAA-------ATAGCTTCATATATTTGTGGTTTCTTTCATAAAA----TTAAATTAGGACGGACAAGTTCTTCGAAGT
GGAGATGGCCGTCCATGAGAACGAACTTGACGAGTATGGAGTTGTTAACAACGCCATTTATGTTGCTTACATCCACAACG
GTTGGGACCAAAATGATGTTTGTTTGCAGTAGAGTTCGGGTTCTTTACCCTTTATGTACACAATCTTGATTCTTACTTTA
AATTGTCTGCAGCTCGAGAGGATCTGGCTGCGAGCATTGGCTTCAGCATGGCCTCCATAGCACGCACCGGCAACGCGATG
GCACTTCTGGAGCTGAACCTCAAGTACCTCAAGCCTCTACGAGTATGTACACACATGCTCCCTCTATTCTAATTTAATTA
AAGTTTAAGATTTATCCTAGGTCAAACTTAACTATATTTAACCAAATGTATAA-AAAATGTGCTAACATTTATTGAACAT
AAAATATGTATAGTATGCAAATATATATTATGATGAAACTAATATGTGTCGTAGATATTGATGTATCTTTCTATAGACTT
TGGTCAAAGTTTGTAACAAGTTTGACTGAGGACAAAGCTAGGACTCCAATTAATTTGCAATGGATAAAGTATGTCGCATC
CGAAACCTCTGAGACCGG--------------------------------------------------------------
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---------------------------------------------------------AAATCTCAAGTTTTTCAGTTCCC
GAACTCTAAAATAGAA-AGATTTAGTAA----CCACACTCTCTATGCGCATTTGATTAATGTGCAGCGAGGTGCCAAGTT
TGTCGTCAAGGTTAGGATTGTCCAAATAAAGGGCGCGAGGATACTCGTTGATCACTTCATCGAGACGCTGCCGGATCATA
AGGTG-------AAGCAATTGGTATTTCTCAACATGAACGCGCCATGTCCTTTATACTGATAAATCTCAAACACGCACTA
TTGATCAATCCC--ACACACACTC--ATGCTGGTCTCCTCTAATGGCAGCTTGTATTGGAAGCGACAGCGACCATCGTCT
GCCTCAACAAGGACTACCGTCCGACCCGCGTCTTCCCAGAGATGTCATCTAAGCTGCATCAGTTCTTCTCATCCAAGGAT
GGTTAGCATGAAGATCAGTTTACAAGCTATAAGTTATTCTAGTTAATTTCATGTGCGTTGTATTGTAGTTAAAATATGTT
CGCCCCTCTGGATGTTGGTTGATTAAAAATTAGTGAACGATACTTTATAGCTTGTAATTTACCAAAGTATTACCCCGCAA
TATTTTTTACCAAAGTATTTATTTATAATAGGGTGTCTGGGTGCCCTTGTTCGCCATTTTTTGTAATAGGTTTGTTGTGC
CGGCATCTAGAGGTAATGCTCATATATTTGTTGGCTCCCTCCTACACTCCAAAGCAAACACGACATATCCTTCTATCTCC
CATATCTTTCAAACCAAACACATGATATCCTCCTGTATTTTTGATAAAGAGCATTTTCATGCAAACGCTATATCGAGCTA
ATACAACCCCAATGAGCGAATATCCTACCTCTGCATAATAAGATGCACACTACCAACAAGTCTGATAATGCTTGAATAAT
GGAGCAACGTGGAAGTTCAAGATCACTAAAAACATCAC---ATCCGTCCCTAGGTCCAACCAAATATAACCAGACCAAAA
CTTCCATTGTAAACTTTGTTATTGAA---------------AAATGGCCATGTTTTTATGTCGATTTTGCCGAGATAAAA
AATTACATCAAAATTATCAACCTACACAAAGAGCTTGAAACGA-TATTTTAGAAACAGATACATGTACAACTTTGACATG
GACAACCATCGCCATCGTTTTAGTGGGTTGTCAGTGATGTGTACAAATCTAGCATTAAGTTTTCACAAACTGGAATCAGT
ACAATAGACAGCAGCGAGCAAGTTAAGTGATCCATGCATGAAAAATATGGCTTCATGGGCAGTTTCCCGGATGAATCAAT
GCTTGCCATGATGGGAAATATAGCACGCCAACAACTACCAGTACCGCCGATCAATATAATCACGCATATATGCGTGGAAC
AATTTTTTTCTCGAGAAAAAGGGCCAAAGGCCCCAGCCCCATTTCTATTACCAAACAAGGCCCAA
>chr3D_1
CATAACGCTCTACAAGTTTTGT-AGATATAGTAAGACTACTACATACATGGACACTTATAAA-CCATTAATTATGATATA
AATTCATCTCTAGCACAATATGATAGTTTATATTTGTTTAAATTTGAACTGAGACCCATCATAAAAAAAT-CTTAAATAA
TGCAAACTAAATTACTAAAATGAAACAACTTACCATAAAACAAATTTTACATTAGCATAACAGAGTGTATTTGTAATAAA
GCTATTAGAATTGTATGATATAT--TCATTTCAGAAGTTTATTATTAGCGATAGGGGCAGAGCCAACATATACTCGAGGT
GAACTCAATGAAATTAGTCAA-TCCCATCAAATGACTGTACTTATTTGTTGTTTGCATCGAAAAATTTATATGCACTACA
TTATGAAACGGAG-GGAGTTTAATTTAACCTTTAATTTAGAACATAACATACCCAATTATGAAATATTTCTACTGGCATT
TTTTTAAATGTGACTAGCCCTGATTAGTGGAAGATGAAACCAAAGAAGATAACATACTTCATTAACCCCCCCCCCCTCCC
AAGAAGAAAAACAGACTTCATTAAGGCCTTGTTCGGTTAATCCTCCTCTCAAGGGGATTGAAGAGGATTGGAGGGGATTT
TGGCTTGTAGAGGATTTAATCCCCCTCAATCCCTGCCAATCTCCTTCAAAATCCACCTCAACCGAACAAGGCCTAA----
--------------------------------------------------------------------------------
-----------------------------------------GCGGGCATCTGTTCCATGTGGCAAGAATGAAACGACACA
CATGTACACTATATATAGATGGGCACCATGAGACCTAACAATACACTTCCATGTTCATCATGCACCGCCCTCCTACTAAT
ATCGCTCCCAACACCCACCACCCACCACCTTGCTTGGTCCATGTTGGGGCTAGAGCTAACTGGTCTCGCTCCGGCCACCT
CGACATGCTCTCCGGCCAATCCCACCATATGAAGGTTCTCGCCGTTCCGGCTTCCAGCTCCCAAGGCAACTCCAACAACA
ACATCAGCCAACATACAAAACTAAGGTTCTTGTAAATGAAACTATTTCACATCCATTGGTATTTGGTAGAACAA------
-------------------------------------------------------------------------TAATCTC
GTCAA-------ATAGCTTCATATATTTGTGGTTTCTTTCATAAAA----TTCAATTAGGACGGACAAGTTCTTCGAAGT
GGAGATGGCCGGCCATGACAACGAACTTGACGAGTATGGAGTCGTTAACAACGCCATTTATGTTGCTTACATCCACAACG
GTTGGCACCAAAATGATGTTTGTTTGCAGTAGAGTTCGGGTTCTTTACCCTTTATGTACACAATCTTGATTCTTACTTTA
AATCGTCTGCAGCTCGAGAGGAGCTGGCTGCGAGCATTGGCTTCAGAATGGCCTCCGTAGCACGCACCGGCAACGCGATG
GCGCTCCTGGAGCTGAACCTCAAGTACTTCAAGCCTCTACGAGTATGTACACACATACTCCCTCTATTGTAATTTAATTA
AAGTTCAAGATTTATCCCAGGTCAA-CTTATCTATATTTTACCAAGTGTATAAGAAAATGTGCTAACATTTATTGAACAT
AAAATATGTATAGTATGCAAATACATATTATGATGAAACTAATATGT--CGTAGATATTGATATATCGTTCTATAGACTT
TGGTCAAAGTTTGTAACATGTTTGACTGAGGACAAAGCTAGGACTCCAATTAATTTGCAATGGATAAAGTATGTCGCATC
CGAAACCTCTGAGACCGG--------------------------------------------------------------
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---------------------------------------------------------AAATCTCAAGTTTTTTAGTTCCC
GAACTCTCAAATAGAAGAGATTTAATAA----CCACGCTCTCTACGCACATTTGATTAATGTGCAGCGAGGTGCCAAGTT
TGTCGTCAAGGTTAGGATTGTCCAGATAAAGGGCGTGAGGATACTTGTTGATCACTTCATCGAGACGCTGCCGGATCATA
AGGTACATGCACAAGCAATTGGTATTGCTCAACATGAACGCGCCGTGTCCTTTATACTGATAGATCTCAAACACACACTA
TTGATCAACCCCACACGCACGCTC--GTGCTGGTCTCCTCTAATGGCAGCTTGTATTGGAAGCGACAGCGACCGTCGTCT
GCCTCAGCAAGGGCTACCGTCCGACCCGCGTCTTCCCAGAGATGTCATCTAAACTGCATCAGTTCTTCTCATCCAAGGAT
AGTTAGCATGAAGATCAGTATACTCGCTATAAATTATTGCAGTTAATTTAATGTGCATTGTATTGTAATTAAAATATGTT
CGCCCCTCTGGATGTTTGTTGATTAAAAATAAGTGAATTATACTTTATAGCTTGTAATTTACCAAAGTATTACCCCACAA
T-TTTTTTACCAAAGTATTTATTTGAAATAGGGTGCCTCGGTGCCCTTGTTCACCATTTTTTGTAATAGGTTTTTTGTGC
CGGCATCTAGAGGTAATGTTCATATATTTGTTGGCTCCCTCCTACACTCCAAAGCAAACACAACGTATCCCTCTATCTCC
CATATCTTTCAAACCAAACAGAAGATATTCTCCCTTATTTTT------GAGCATTTTCATCCAAATGTCATATCGAGCCA
ATACAATCCCAATGAGCGAACACCCGACCTCTACATAGTAAG-TGCACACAACCAACAAGTCTGATAATGCTTGAACAAT
GGAGCAACACGT---TTCAAGATCACTGAAACCATCACCTCATCCGTCCCTTGGTCGAACCAAAGATAGCCAGACCAAAA
CTTTCATTGTAAACTTTGTTACTGAAAATGACATTATTGAAAAATGGCCATGTTTTTATGTCGATTTTGCCAAGATAAAA
ATTTACATCAAAATTATGAACCTATACAAAGAGCTTGAAACAACTATTTTAGAAACCGATACATGTACAACTCTGACATG
GACAACCATTGCAATCGTTTTAGTCGGTTGTTAGTGATCTGTACAAATCTAGCATTAAGTTTTCACAA-CTGGAAACAGT
ACAATAGATACAAC------AGTTAAGTGATCCATGCATGAAAAATATGGCTTCATGGGCAGTTTCCCGGATAAATCAAT
GCTTGCCATGATGGGAAATATAGCACGCCAACAACTACCAGTACCGCCGATCAATAAAATCACGCATATATGCGTGGAAC
AATTTTTTTCTCGAGAAAAAGGGCCAAA--CCCCAGCCCCATTTCTATTACCAAACAAGACCCAA
>chr3B_1281
ATTGCTCAACATGAACGCGCCGAGTCCTTTATATTGATAAATCTCAAACAAGCACTATTGATCAATCCCACACGCACGCT
CGTGCTGGTCTCCTCTAATGGCAGCCTGTATTGGAAGCGACAGCGACCGTCGTCTGCCTCGGCAAGGACTACCATCCGAC
CCGCGTCTTCCCTGAGATGTCATCTAAGCTGCATCAATTCTTCTCATCTAAGGATGGTCAGCATGAAGATCAGTTTACAA
GCTATAAATTGTTGTAGTTAATCTCATGTGCATTGTATTGTAGTTAAAATATATGTTGACCCCTCTGGATGTTGGTTGAT
TAAAAATTAGTGAATGATACTTTATAGCTTGTAATTTACCAAAGTATTACCCTGCATTTTTTTACCAAAGTATTTATTTG
AAATAGGGTGCCTAGGTGCCCTTGTTCACCATTTTTTGTAATAGGTTTGTTGTGCCGGCATCTAGAGGTAGCATTACTCN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNTACGACTACGTACTTCATTTTCCACCCAAAGAAAAGGATAAATACTGTTACTACTTCATTAGGCCGGCATCTGTTCC
ACGTGTCAAGAATGAAAAGCCACTCAGCGTGCACGCGCGTACACTATATAGACGGGCACCATGATGAGATCAAACAACAC
AAAATATTCTCTCGTTCACCATGCAGCAACCTGGTAGTAATATCGCTCCCAACGCCCACCACTCACCACCTTCCTTGGCT
CGTGCTGGGGCTAGAGCTAACTGGTCCCGCTCCGGCCACCACCTCGCCATGCTCTCCGGCCAATCACGTCGCCCCCGCCG
TGTGAAGGCCCTCGCCATCCCTGCACCTGGCTCCCAGGGCATCTTCAGCGACAACACCAGCCACGAAACAAAACTAAGGT
TCTTCCGAATTGAACTAGTTTTTATTGACACAAATGTCACATTAAGGCGATACAAGCAAAAAAGACTTCACACCCGTCCT
CTGCGTAGTCCAATAGCTTCATCTATTTGTGTTTTTGTT-----ATGCAGTTCAATTAGGGTGGACAAGTTCTTCGAAGT
GGAGATGACCGTCCGTGACAGTGATCTTGACCAGTATGGAGTCGTTAACAACGCCATTTATGTTGCTTACATCCACAATG
GTTGGCATCCAAGTGATATTTAAGCATAGTAGAGCTTGGGTTTTACTCT-----TGTACACAGTGTTGATTCTTGCTTAA
AATTGCCTGCAGCTCGAGAGAAGCTGGCTGCGAGCATTGGCTTCAGCATGGCCTCCGTAGCACACACAGGCAACGCGATG
GCACTCTTGGAACTGAACCTCAAGTACTTCAAGCCTCTACTGGTATGTGCATGGGACATCCGAAATCTCTTCTTTCCGCG
AG------------------------------------------------------------------------------
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-----------------------------------------------------------------------GATCACATC
CAAAACCTCTAA--------------------------------------------------------------------
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----------------------------------------------------------------------GGCTCTGCTC
GCAATGGTTTTAAAATTAGTATGGGCACTGGTATCTAGCTCAGTTGTGAACAAAATACCGG----CATGCTAATTTTACA
GTCATTCCAAGCAGCCCCTAAGATTGGAAATCTCGAGGTTCTTATTTCCAAACCCCCAAATCTCAAGTTTTA--------
------------------------ATAACCACCCACGTGCA----------TTGATTAATATCCAGCGAGGTACCAAATT
TGTCGTCAAGGTGAGGGTTGTCCAGATAAAGGGTGTGAGGATACTTGTTGAACACTTCATGGAGACACTATCGGATCGTG
AGGTATGTGCAGAAACGATGGATGT---------TGAACGCACCGTTTCCCTTATAGTGATCAGTCCTT--------ATA
CTGATCAATCCC--ACCCAT--GTGTATGTTGATCTCCTCTAATGCCAGCTTGTTTTGGAAGCGATAGCGACCGTCGTCT
GCCTCAACAAGGACTACCGTCCGACCCGCGTCTTCCCGGAGGTGTCATCCAAGCTGCAGCAGTTCTTCTCAACCTAGGAC
GGCTAGCGTGAAGATCAGCTTACAAGATAT--------------------------------------------------
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>chr3B_1281
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GTCCA-------ATAGCTTCATCTATTTGTGTTTTTGTT-----ATGCAGTTCAATTAGGGTGGACAAGTTCTTCGAAGT
GGAGATGACCGTTCGTGACAATGATCTTGACCAGTATGGAGTCGTTAACAACGCCATTTATGTTGCTTACATCCACAATG
GTTGGCATCCAAGTGATATTTAAGCATAGTAGAGCCTGGGTTTTACTCT-----TGTACACAGTGTTGATTCTTGCTTAA
AATCTCCTGCAGCTCGAGAGGAGCTAGCTGCGAGCATTGGCTTCAGCATGGCCTCCGTAGCACACACCGGCAACGCGATG
GCACTCTTGGAACTGAACCTCAAGTACTTCAAGCCTCTACTGGTATGTGCATGGCACATCCGGAATCTCTTCTTTTTGCG
AG------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------TGTCACATC
CGAAACCTCTAAGGCTCTCCTCACAGTATTTGAAGAGGAAAACTCTGTCTCAATGTGAGTCATCTCCTGCCAACTCTCAT
TTCTGGAATGGTATCATGAGTGTTAAAGATATCTTTTACAACTGTTGTCAGAGAATTGTTGGGGATGGGCATAAAACTAG
ATTTTGGGAAGATGCTTGGATCCACAACAAGCCTCTCTGTCAACTTTTTCCTCGCTTGTACAAGCTTACTTTTCATCAAA
ACATTACGGTTGCTAAAGCATTTGAACAGGATTTTAACTGCGTTGGATTTAGGAGATGTTTATATGGGGAGACACTGGAT
ATGTGGAATAAGCTTCTGGATATGTGCAGTCAGGTTGTTCTGAGTGAGGAACCTGACAAAGTCAAATGGCTTTTGACTAG
CTCTGGCCAGTTCTCCGTTAAATCTCTTTATCAATATATTATTGCTAAGAGAGTAGTGTTCCCTTTTAAGTTTCTTTGGA
ACCTGAAGGTACCTTTGAAAATTAAAGCTTTTATATGGTTAGTTATCAAAAGAAGGATCCTGACCAAGGACAACTTGTGT
AAAAAAGGCTGGAAAGGCACCAACAAATGTGAATTTTGTGATGCCAATGAATGTATTGATCATCTGTTTTTCACTTGTTC
TCTTGCTCGGTTTCTTTGGAATGTAGTTGGGAGTGCTTTGGGAAATCCCCAAACACCCCTGTCATTCTTTGACCTTTGCC
AGAATTGGCTTCCTAAGTTCACTGGGAAAGATAGAATGGTTATAGCTATTGGTACGACTGCTTTGTTATGGTCGATCTGG
AAAGCAAGAAATAAATCCTGCTTTCAAAGTTCTTTACCTAGGGATCCTACTGATATTATCTTCTCTTTATGTTATGTGTT
GGATTCGTGGGGTGTGCTACAGAAAAAAGGGGTGCAAAAAACTCTTAAGGAAGTGACCAAGAGGTTGGCCCAGATAGCGA
GGGACGTCTTCAAGCGTGCTTACGGGTGGGGCCCTGCTGTACGGAGGCTCTGTTGATCAAGTGTTGATAGATGCAGCATT
TGCGATTATCTCTCTTGTTCTTTTGATATAGCACCCTGTAGGTGCAGATTTTGGCATCTCAGGTGTAGGAGTTTATTCCC
CTTATGCAAAATATTAGGCAACATTTGTAGCGATGATGCTTTGGAGCGTTTTTCTGTTGTAGCATCCTGTTAGGTGCGGT
TGAAATGCCTCTAGATGTATGAGTAGTGTTTCCTGGTGCAGATGTTAGGCATCGAAAAATGTTAAGTTTGTATGGAACTT
GCTTTGTATGTTGTGACTCCATTTTCGTAATGAAAATGGGGGCCATGGGGCCCCTCTGATCGGAAAAAAAGGCTCTCCTC
ACAGTGGTTGTAAAATTAGTGTGGCCACCGGTATCTAGCTCAATTTTGAACTAAATACCGGTGGCCATGCTAATTTTACA
ATCATTCCAAGCAGCCCATAAGATTGGAAATCTCGAGGTTCTTATTTCCAAACCCCCAAATCTCAAGTTTTT--------
------------------------ATAA----CCACATGCA----------TTGATTAATATACATCGAGGTGCCAAATT
TGTCGTCAAGGTGAGGGTTGTCCAGATAAAGGGTGTGAGGATACTTGTTGAACACTTCATCGAGACACTACCGGATCGTG
CGGTATGTGCAGAAACGATGGATGT---------TGAACGCGTTGTCTCCCTTATAGTGATCAATCCTTT-------ATA
CTGATCAATCCC--ACCCGT--GTGTGTGTTGATCTCCTCTAATGGAAGCTTGTTTTGGAAGCGATAGCGACCGTCGTCT
GCCTCAACAAGGACTACCGTCCGACCCGCGTCTTCCCGGAGATGTCATCCAAGCTGCAGCAATTCTTCTCAACCCAGGAC
GGCTAGCCTGAAGATCAGCTTACAAGATAT--------------------------------------------------
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>chr3D_1281
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GTCCA-------ATAGCTTCATATATTTGTGTTTTTGTT-----ATGCGGTTCAATTAGGGCGGACAAATTCTTCGACGT
GGAGATGACCGT---------CGATCTTGACCAGTATGGAGTCGTTAACAACGCCATTTATGTTGCTTACATCCACAATG
GTTAGCACCCAAGTGATATCTAAGCAGAGTAGAGCTTGGGTTCTACTCT-----TGTACACGGTGTTGATTCTTGCTTAA
AATCGCCTGCAGCTCGAGAGGAGCTGGCTGCG------------AGCATGGCCTCCGTAGCACGCACAGGCAACGCGATG
GCACTCTTGGAACTGAACCTCAAGTACTTCAAGCCTCTACTGGTATGTGCATGGCACATCCAAAATCTCTTCTTTTTGCC
AG------------------------------------------------------------------------------
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-----------------------------------------------------------------------GGTCACATC
GGAAT-CTCTAA--------------------------------------------------------------------
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----------------------------------------------------------------------GGCTATGCTC
GCAGTGGTTGTAAAATTAGTGTGGCCATCAGTATGTAGCTCAATTTTGAACTAAATACCGGTGACCATGCTAATTTTACA
GTCATTCCAAGCAGCCCATAAGATTGGAAATCTCAAGGTTCTTATTTCCAAACCTCCAAATCTCATGTTTTA--------
------------------------ATGACCACCCACGTGCA----------TTGATTAATATCCAGCGAGGCGCCAAATT
TGTTGTCAAGGTGAGGGTTGTCCAGATAAAGGGTGCGAGGATACTTGTTGAACACTTCATCGAGACACTACCGGATCATG
AGGTATGTGCAGAAACGATGGATGT---------TGAAAGGGCCGTTTCCCTTGTAGTGATCAGTCCCTT-------ATA
CTGATCAGTGCC--ACACGTGCGTGTTTGTTGATCTCCTCTAATTGCAGCTTGTTTTGGAAGCGGCGGCGACCGTCGTCT
GCCTCAACAAGGACTACCGTCCGACCCGCGTCTTCCCGGAGATGTCGTCCAAGCTTCAACAGTTCTTCTCGTCCTAGGAT
GACTAGCACGAGGATCAGTTTAAAAG------------------------------------------------------
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>chr3A_1281
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GTCCA-------ATGGCTTCATATATTTGTGTTTTTGGCGTTGCATGCAGTTCAATTAGGGCGGACAAGTTCTTCCAAGT
GGAGATGACCGTCCGTGACAACGATCTTGACCAGTATGGAGTCGTTAACAACGCCATTTATGTCGCTTATATCCACAACG
GTTGGCATCCAAGTGACATTTAAGCATAGTAGAGCTTGGGTTTTACTCT-----TGTACACAGTGTTGATTCCTGCTTAA
AATCACATGCAGCTCGAGAGGAGCTGGCTGCGAGCATTGGCTTCAGCATGGCCTCCGTAGCACGCACAGGCAACGCGATG
GCACTCTTGGAACTGAACCTCAAGTACTTCAAGCCTCTACTGGTATGTGCATGGCACGTCTGAAATCTCTTCTTTCTGCG
AG------------------------------------------------------------------------------
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-----------------------------------------------------------------------TGTCACATC
CGAAACCTCTAA--------------------------------------------------------------------
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----------------------------------------------------------------------GGCTCTGCTC
GCAGTGGTTGTAAAATCAGTGTGGCCACCGGTATCTAGCTCAATTTTGAACTAAATACCGGTGACCATGCTAATTTTATA
ATCATTCCAAGCAGCCCCTAAGGTTGGAAATCTCGATGTTCTTATTTCCAAGCCCCAAAATCTCAAATTTTA--------
------------------------ATAA----CCACGTGCA----------TTGATTAATATCCAGCGAGGCGCCAAATT
TGTCGTCAAGGTGAGGGTTGTCCAGATAAAGGGTGCGAGGATACTTGTTGAACATTTCATCGAGACACTACCGGGTCATG
AGGTATGTGCAGAAACGATGGATAT---------TGAACGCGCCGTTTCCCTTATAGTGATCAGTCCCTC-------CTA
CTGATCAATCCC--ACGCGTGCGTGTGTGTTGATCTCCTCTAATGGCAGCTTATTTTGGAAGCGACGGCGACTGTCGTCT
GCCTCAACAAGGACTACCGTCCGACCCGCGTCTTCCCGGAGATGTCATCCAAGCTGCAGCAATTCTTCTCAACCCGGGAC
GGCTAGCGTGAAGATCAACTTACAAACTAT--------------------------------------------------
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-----------------------------------------------------------------
>SNPs
------S--------S----S-S---------------------------------------S-----------------
------------------------------------------------------S---------S----SS---------
------------------------------S-------------S-----S------------------S----------
SS---------------------SS-------------------------------------------------------
---------------------S-------------------------S--------------------------------
---------S--SS----------------S--------S------------------------S-S---------SS-S
-S---SSS------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------------
--S--------------------------------S--------------------------------------------
--------------------------------------------------------------------------------
--S----------S--S-------S--------S-----------S--S-----------------------------S-
--------------------------------------------------------------------SSS-SSSSSSSS
SS-SSSSS-SSSSSS-SS----S--SS-SSSS--SSSSSSS-SSSSSSSSSSSSSS-SS-SSSSSSSSS---S-------
----------------------------------------------------S---------------------------
------------------S-----------------------S-------------------------------------
-----S--------------------------------------------------------------------------
----------------------S---------------------------------S-----------------------
-----S---------------------S----------------------------S-----------------------
-----S-----------S-------S----S--------S-----S----------------------------------
-----------------------S-----------------------SS-------------S----S------------
------------------S-------------------------------------------------------------
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------------------------------------------------------------------------S-------
-------S----------------S-------------------S--S--------------------------------
------------------------S--------------------S----------------------------------
----S---------------------S-----------------S-----------------------------S-----
--------------------S----------------------------------------------------S------
--------------------------------------------------------------------------------
--------------------------------S-----SS---------S------S----------S------------
----------------S-------------S------SS-------------------------------------S---
-S----------------------SS---------S--S-------------S--------------------S------
------------------S------------------------------------------S--S-----S---------
--------------------S-S-----S----SS-------SSSSSS------------S----S-SS---------S-
------S-------------S-S--S------S----S----S-------S-------------------------S---
--------SS-SSSS------------S---S-------------------S----S-------S---S-----------
---S-----------------S-------------------------------------------------S--------
-S---------------S------S----------------S--------------S---------------S-------
---------S--S-----------S------S------S-----------------------------S------S----
--------S-SS-SSSSSSS----------------------------------------------------S-------
--------------------------------------------------------S-----------------------
----------------------------SS-----------------------------S-----
>forward_883
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------CAAGAATGAAACGGCACA
CAC-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------
>reverse_3627
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------TCTCAACATGAACGCGCCAT----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------
>forward_1074
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------GCAAATCCCGGCATGTGAAA----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------
>reverse_4074
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------GTTGTGC
CGGCATCTAGAGG-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------
