>input_sequence_54090
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----------CTATAAATACCTAGCCGGTAGCAGCTCTCTCTTCACAGCCAAGCAACCATCCATCGG-----TTCCTCAG
CAAGT-CGGTCGGTCGCTTTACCGAGCTAGAAAGGCACCAGCT----GCTAGCTTCGAG--CTCTTTGCAATGGCCTCCG
CCAATGCTCTGCTCCTGCTCTTCTCGGCTGCCTTCTGCTTCCTCGCCCGGCGGGCCGCCGGCGACTATGGCTCGTGGCAG
AGCGCCCACGCCACCTTCTATGGCGGCGGCGACGCGTCCGGCACAATGGGTGAGTTC------ATCAGGAG---TATTAC
ACTGTTGAAGAGAAAAAAACA----ACCTACCTAC--CTAC-----C-----TGTATGTGTGTGGTTCCCGACATGAGTG
----TAGTACAGTGTCTAACT---GAAGTG---TCCTG---------CAGGCGGCGCGTGCGGCTACGGGAACCTGTACA
GCACGGGGTACGGCACGAACACGGCGGCGCTGAGCACGGCGCTGTTCAACGACGGCGCGGCGTGCGGGTCGTGCTACGAG
CTCAAGTGCCAGGACGTGAGCAGCTCCTGCCTGCCGGGCAGCATCACCATTACCGCCACCAACCTGTGCCCGCCCAACTA
CGCGCTGCCCAACGACGACGGCGGCTGGTGCAACCCGCCGCGCGCCCACTTCGACATGGCCGAGCCGGCCTACCTCCAGA
TCGGAATCTACCGCGCCGGCATCGTGGCCGTCGCCTACAGGAGGTGAGGCAGCCAGTTACAAACCTTCTCGCGTGCACAA
ACTTCCTTAATCTGGTC---------------------------------------------------------------
-------------------------------CCGTGTCGGTGTCGATGGACCATGTTAGGTGGGCCAGAGTGC---AGAT
T--TGGTGT--AGTTTGGTCTGACAGCGACTCTCGGTGCTGTTTCGAAATAGTTTAGGCGTCACGCTCACTTGACCACCA
CGATGTGTTG----TTCCAAGTTGCATGATCCACTAGTAGAAACTGTTGCGGTTTCACTGAACTGAAGATTTGTGTTTCG
CCGATC----------------------------------------------------------------ATG-GTGCAG
GGTGCCGTGCGTGAAGAAGGGTGGGATCAGGTTCACCATCAACGGGCACTCCTACTTCAACCTGGTGCTGGTGACCAACG
TGGCCGGCGCCGGCGACGTGCAGTCCGTGGCCATCAAGGGGTCCAGCACCGGGTGGCAGGCCATGGCCCGCAACTGGGGC
CAGAACTGGCAGAGCAACGCGGACCTCGACGGCCAGAGCCTCTCCTTCCGGGTCACCCTCAGCGACGGCCGCACCGTCAC
CAGCAACAACGCCGCCCCCGCCGGCTGGTCCTTCGGCCAGACCTTCGAAGGAGCCCAGTTCTAGCGAGG-----------
-----TCGTCCGTGGACGGATGGATTGCATTGGTTTGGAGCTTGA------GCAAGAGAAG---GAAACCTCTTCGTTAT
A-------------------------------------------------------------------------------
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>chr3B_1_TraesCS3B01G376800
TAAACTTATCATTTGGTGTTGGACTGGTAGTGCTGGGCATGCATGTCGCTAGTGCTAGGGAAGTGGCATTTTAACCTCGT
TAGATTAATCTGTTT---------AACT-CCCTGATTCGCGTGACTAATCCGATGTTTCTTCCCTAGTTAGTTTCCACAC
CCGACAGGCAGATCTCAGGTTTATATAACTTTAGTGGAGCGACAGGCTCCGGGTGGCCGGAGGTTACAACCGACGAAAAG
TTAACT----GAAGAACGCAAGTTTCGAATCTCCTCGCCACCGTTGGAAAGGAGAAAGGCGT----CCAGAGGAGGAACA
TGCTTCACACTCTGGGACGATTGGTTGTCGTGCGCCCTCTTTCCGCTCCTCATATTAATCTACGTGCAACTTGATGGATC
GAGCATCACTAAACAAGTGGGTTTGCTTTAGGCTTTCGAGTTCCGTCGGCCGTCGCATCAAACTGTTGCGCGCGACCTTG
ACATCCTGTCCCTGCCACAGGTCGTAGTAGTAAAAGTTTGGCATGGCATGCATGTTACA---ATAACTGAATTACCAGAC
GGCGACGGGAACATGCACAATTCATTAGCAGCAGCATCTTGATCCT-GATTGAATCGTGATATATGCCGATCAGGTTCCC
ACGATCA-----CATGGTTAATCTATGTATTTTATGGTTATGTATCAATCAAGAGGATCCATATTGTTTTTCTTCTTCCC
AGTGGCGAAATCCATGGACTGTAGCTCGTGGGAGCCATGTGG--------GCGGGCGAGCTTAATCTGGCCATGAATTGT
ACGCACACGACCAGTTGCTGTCTCGTTGTGTGCAGCGTCCGCGGTGACGAGCACCCGCATGTGCGCGCGATTCGTATGTG
CTAACCGCCGTCGTGGCCGCTCGTGGTCGGCGGTGGTTCGGGGCCGGGGGATGGA-----------TACGCAGTCCCCAC
TTCCATCTCCGACTTTTGTCCCCTGT----TCTCTGCCGTTCGGCAAAGCGATTAACGATTCCAACGGCCAGGAGCACTC
GGCAGCTCGCCTATAAATACCTAGCCGGTAGCAGCTCTCTCTTCACAGCCAAGCAACCATCCATCGG-----TTCCTCAG
CAAGT-CGGTCGGTCGCTTTACCGAGCTAGAAAGGCACCAGCT----GCTAGCTTCGAG--CTCTTTGCAATGGCCTCCG
CCAATGCTCTGCTCCTGCTCTTCTCGGCTGCCTTCTGCTTCCTCGCCCGGCGGGCCGCCGGCGACTATGGCTCGTGGCAG
AGCGCCCACGCCACCTTCTATGGCGGCGGCGACGCGTCCGGCACAATGGGTGAGTTC------ATCAGGAG---TATTAC
ACTGTTGAAGAGAAAAAAACA----ACCTACCTAC--CTAC-----C-----TGTATGTGTGTGGTTCCCGACATGAGTG
----TAGTACAGTGTCTAACT---GAAGTG---TCCTG---------CAGGCGGCGCGTGCGGCTACGGGAACCTGTACA
GCACGGGGTACGGCACGAACACGGCGGCGCTGAGCACGGCGCTGTTCAACGACGGCGCGGCGTGCGGGTCGTGCTACGAG
CTCAAGTGCCAGGACGTGAGCAGCTCCTGCCTGCCGGGCAGCATCACCATTACCGCCACCAACCTGTGCCCGCCCAACTA
CGCGCTGCCCAACGACGACGGCGGCTGGTGCAACCCGCCGCGCGCCCACTTCGACATGGCCGAGCCGGCCTACCTCCAGA
TCGGAATCTACCGCGCCGGCATCGTGGCCGTCGCCTACAGGAGGTGAGGCAGCCAGTTACAAACCTTCTCGCGTGCACAA
ACTTCCTTAATCTGGTC---------------------------------------------------------------
-------------------------------CCGTGTCGGTGTCGATGGACCATGTTAGGTGGGCCAGAGTGC---AGAT
T--TGGTGT--AGTTTGGTCTGACAGCGACTCTCGGTGCTGTTTCGAAATAGTTTAGGCGTCACGCTCACTTGACCACCA
CGATGTGTTG----TTCCAAGTTGCATGATCCACTAGTAGAAACTGTTGCGGTTTCACTGAACTGAAGATTTGTGTTTCG
CCGATC----------------------------------------------------------------ATG-GTGCAG
GGTGCCGTGCGTGAAGAAGGGTGGGATCAGGTTCACCATCAACGGGCACTCCTACTTCAACCTGGTGCTGGTGACCAACG
TGGCCGGCGCCGGCGACGTGCAGTCCGTGGCCATCAAGGGGTCCAGCACCGGGTGGCAGGCCATGGCCCGCAACTGGGGC
CAGAACTGGCAGAGCAACGCGGACCTCGACGGCCAGAGCCTCTCCTTCCGGGTCACCCTCAGCGACGGCCGCACCGTCAC
CAGCAACAACGCCGCCCCCGCCGGCTGGTCCTTCGGCCAGACCTTCGAAGGAGCCCAGTTCTAGCGAGG-----------
-----TCGTCCGTGGACGGATGGATTGCATTGGTTTGGAGCTTGA------GCAAGAG---AAGGAAACCTCTTCGTTAT
AGTAAA-GAAGAGGCCTTCGGCTATTCCGAGGCTGCTGCTGATCAGCACCCGCTTAGGCCTTCCCTTCT-CTCATACTAG
TAGCAC-AGTAGTAGACATAAATAAGTTATTACTTATTGTGGAGTTGAGCATTTTGATCATTGTTAGTGTGGCCTTGCGT
TGTGAAAACATCGCAAGGTGA-T-TTATTTAAGGGTGCTTTAGAGGTACACATGCATGGAGTGG----------TGTGTG
AGAGTGTCTTGTAACTTCTGTTGTTG------------CCGAATCCTGCCATATGGTTGGGAGATGTTTGTG-----GGG
GCACACTTGTTATTTTGGGGACCATGAACAATGCTAG-TTTATGGTTTAACCGTTTCA--AGTAGTACAACTATTTTTTT
TTCGTTTGAGAGTACG-CTACA-CGTATCATATTTTTATAGAAGACATAATTTCAATTATAAGAGAATTGCAACTTATTG
CGAACAACGAGTGTAGCAC-AACTCAACA-CCAAGCTAGTCCGAAGGCGGCCACCAGAGACAACAGAAATACAAAGGAGA
AGTGCCTATCCAAAGTAGAGCAACAACACCGCGTCTCGA--------------CTCCGAAGACAACTTAAACTCCAACTG
AACGTCCCTCGTCAACGCACCATCCACCCTTGATGCAT-AAAAGGAGGTGGCAAGTAGATGGTGGGACTTGGACGGTCCC
AAGAAAATCACTGTCTTGAACTCACCGGCGACTATGTACATTGCGCTCCTAAAGCGCATCCTTGGACAACGATGAGCACC
GGAGGAGCGCCACATA-GAACCTCAGGTAGTGTCTCCAAAAATGGTGCTCCCATTGGAGGAACGACGTCGAAGACGCTGC
CGTCGTGCCAATCCAACTCCGAACCAAGGCTTTCGCCCGGAGACAACTACCAACCC------CATGTGAGAGCTAGGAAG
ACGCCGACACACTCGGTGACGCCTCCAAGGAGAAAAACGACA----CGGGCGCTGTCGCCACCTACACCGACCGGAGACG
GATAATCAATTGACCTTTGTCCCATC
>chr3D_5
----CTTATCATTTGGTGTTGGACTGGTAGTGCTGGGCATGCATGTTGCGAGTGCTAGGGTAGTGACATTTTAACCTCGT
TAGATTAATCTGCCATAGGACCAGAACT-CCCTGATTCGCGTGTCTAATCCGATGTTCCTTCCCTAGTTAGTTTCCGCAC
CCGACAGGCAGATCTCAGGTTTATATAACTTTAGCGGAGCGACAGGCTCCGGGTGGCTGGAGGTTACAACCGACGAAAAG
TTAACT----GAAGAACGCAAGTTTCGAATCTCCCCGCCACCGTTGGAAAGGGGAAAGGCGTACGTCCAGAGGAGGAACA
TGCTTCGCACTCTGGGACGATTGGTTGTCATGCGCCTTCTTTCCGCTCCTCATATTAATCTACGTGCAACTTGATCGATC
GAGCATCACTAAACAAGTGGGTTTGCTTTAGGCTTTCGAATTCCGTCGGCCGTCGCATCAAACTGTTGCGCGCGACCTTG
ACATCCTGTCCCTGCCACA---CGTCGTAGTAAAAGTTTGGCATGGCATGCATGTTACTCCTATAACTGAATTACCAGAC
GGCGACGGGAACATGCACAATTCAT---CAGCAGCATCTTGATCCTTGATTGGATCGTGATATATGCCGATCAGGTTCAC
ACGATCACACCACATGGTTAATCTATGTATTTTATGGTTATGTATCAATCAAGAGGATCCATATTGCTTTTCTTCTTCCC
AGTGGCGAAATCCATGGACTGTGGCTCGTGGGAGCCATGTGG--------GCGGGCGAGCTTAATCTGGCCATGAATTGT
ACGCACACGACCAGTTGCTGTCTCGTTGTGTGCGTCGTCCTCGGTGACGAGCACCCGCATGTGCGCGCGATTCGTATGTG
CTAACCGCCGTCGTGGCCGCTCGTGGTCGGCGGTGGTTCGGGGCCGGGCC--GGA-----------TACGCAGTCCCCAC
TTCCATCTCCGACTTTTGTCCCCTGTTCTCTCTCTGCCGTTCCGCAAAGCGATTAACGATTCCAACGGCCAGGAGCACTC
GGCAGCTCGCCTATAAATACCTAGCCGGTAGCAGCTCTCTCTTCACAGCCAAGCAACCATCCATCGGCAAGGTTCCTCAG
CAAG-TCGGTCGGTCGCTGAACCGAGCTAGAAAGGCACCAGCT----GCTAGCTTCGAG--CTCTTTGCAATGGCCTCCG
CCAATGCTCTGCTCCTGCTCTTCGCGGCCGCCTTCTGCCTCCTCGCCCGGCGGGCCGCCGGCGACTACGGCTCGTGGCAG
AGCGCCCACGCCACCTTCTACGGCGGCGGCGACGCGTCCGGCACAATGGGTGAGTTCGTCTTCATCAGGAG---TATTAC
ACTGTTGAAGCGAGAGAAAAGCACCACCTACCTAC--CTGTATAGGCTGTATTGTATGTGGGCGGCTCCCGACATGAGTG
----TAGTAGAGTGTCTAACTACTGAAGTGTCCTCCTG---------CAGGCGGCGCGTGCGGCTACGGGAACCTGTACA
GCACGGGGTACGGCACGAACACGGCGGCGCTGAGCACGGCGCTGTTCAACGACGGCGCGGCGTGCGGGTCGTGCTACGAG
CTCAAGTGCCAGGACGTGAGCAGCTCCTGCCTGCCGGGCAGCATCACCATCACCGCCACCAACCTCTGCCCGCCCAACTA
CGCGCTGCCCAACGACGACGGAGGCTGGTGCAACCCGCCGCGCGCCCACTTCGACATGGCCGAGCCCGCCTACCTCCAGA
TCGGCATCTACCGCGCCGGCATCGTCGCCGTCGCCTACCGGAGGTGAGCCACT----------------------TACAA
ACTTCCTTAATCTGGTC---------------------------------------------------------------
-------------------------------CCGTGTCGGTGTCGATGGACCATGGTAGGTGGGCCAGAGTGC---AGAT
T--TGGTGCAGAGTTCGGCCTGACAGCGACTCTCGGTGCTGTTTCGAAATAGTTTAGGCGTCACGCTCACTTGACCACCA
TGATGTGTTG----TTCCAAGTTGCATGATCCAA--------------------TCACTGAACTGAAGATTGTTGTTTCG
CCGACTG----------------------------------------------------------------TGTGTGCAG
GGTGCCGTGTGTGAAGAAGGGCGGGATCAGGTTCACCATCAACGGCCACTCCTACTTCAACCTGGTGCTGGTGACCAACG
TGGCCGGCGCCGGCGACGTGCAGTCGGTGGCCATCAAGGGGTCCAGCACCGGGTGGCAGGCCATGGCCCGCAACTGGGGC
CAGAACTGGCAGAGCAACGCGGACCTCGACGGCCAGAGCCTCTCCTTCCGGGTCACCCTCAGCGACGGCCGCACCGTCAC
CAGTAACAACGTCGCCCCCGCCGGCTGGGCCTTCGGCCAGACCTTCGAAGGAAGCCAGTTCTAGCGAGGTCGAC------
------CGTGGACGGACGGATTGCTTGCATTGGTTTGGAGCTTGA------GCAAGAGAAGAAGGAAACCTCTTCGTTAT
AGTAAAAGAAGAGGCCTTCGGCTATTCCGAGGCTGCTTCTGATCAGCACCCGCTTAGGCCTTCCCTTCT-CTCATACTAG
TAGCAC-AGTAGTAGACATAAATAAGTTATTACTTATTGTGGAGTTGAGCATTTTGATCATTGTTAGTGTGGCCTTGCGT
TGTGGAAACACCGCAAGGTGA-T-TTAGTTAAGGGTGCTTTAGAAGTACA--TGCATGGGGTGTTTTGTATTCATGTGTG
AGAGTGTCTTGTAACTTCTGTTGTTGAGTTGT-AACCCCCAAATCCTGCCACATGGTTGGGAGATGTTTGTGATTGTGGG
GTACACTTGTTATTTTGGGGACCATGAACAATGCTAC-TTTATGGTTTAACCGTTTTA--GGTAGTACTACTTTTTTTT-
-------GAAAGTACGCCTATA-CGTATCAAATTTTTATAGAAGGCAGAATTTCAAT---AAAAGAACTATAACTTGTTG
CGAACAATAAGTGTAGCAC-AACTCCACA-CCAAGCTAGTTCGAAGACAGTCATCATAGACAATACAAATACAAAGGAGA
AGTGCCTATCCAAAGCTGAGCAACAACACCACATCACGACAGACGCCGGCCACCTACGAAGACAACTTCAACTTCAATTG
AACGTCCCTCGTCAACGCATCATCCACCCTTGATACCTAAAAAGGAGGTGGCAAGTAGATGGTGGAACTTGGACGGTCCC
AAGAAAAGGACCGTCTTGGATTCACTGGCGACGACGTACATTGCACTCCTAAAGCTCATCCTTGGACAACGACGAGCACC
GGAGAAGCACCACATA-GAACCTCAGGTAGTGTCTC--AACTTGATGCTCCCACCGGAGGAATGACATCGAAGACGCCGC
CAT-GCGCCAATCCTACTCCAAACCAAGGCTTTCGCCTGGAGACAACTACCAACCC------CATGTGAGAGCGAGGAAG
ATGCCGACACACTCGTTGATGCCTCCAAGGAGAAAAACAACACCCACGGGCGCCGTCGCCACCTACACCGACCGGAGACG
GATAATCAGCTGACTTTTGTCCCAT-
>chr3A_5
----CTTATCATTTGGTGTTGGACCGGTAGTGCTGGGCATGCATGTTGCAAGTGCTAGGGTAGTGGCATTTTAACCTCGT
TAGATTAATCTGTCTCAGGACCAGAACTCCCATGATTCGCGTGTCTAATCCGATGTTTCTTCCGTGGTTGGTTTCCACAC
CCGACAGCCAGATCTCAGGTTCATATAACTTTAGCAGAGCGACAGGCTCCGGGTGGCCGGAGGTTACAACCGACGAAAAG
TTAACTAACTGAAGAACGCAAGTTTCGAATCTCCTCGCCACCGTTGGAAAGGGGAAAGGCGTACGTCCAGAGGAGGAACA
TGCTTCACACTCCGGGACGATTGGTTGTCATGCGCCCTCTTTCCGCTCCCCATATTAATCTACGTGCAACTTGATCGATC
GAGCATCACTAAGCAAGTGGGTTTGCTTTAGGCTTTCGAATTCCGTCGGCCGTCGCATCAAACTGTTGCGCGCGACTTCG
ACATCCTGTCCCTGCCAGA---CGTCGTAGTAAAAGTTTGGCATGGCATGCATGTTACTCCTATAACTGAATTACCAGAC
GGCGACGGGAACATGCATAGTTCATTAGCAGCAGCATCTTGATCCT-GATTGGATCGTGATATATGCCGATCAGGTTCAC
ACGATCA-----CATGGTTAATCTTTGTATTTTATGGTTATGCATCAATCAAGAGGATCCATATTGTTTTTCTTCTTCCC
AGTGGCGAAATCCATGGCCTGTAGCTCGTGGGAGCCATGTGGCCATGTGGGCATGCGAGCTTAATCTGGCCATGAACTGT
ACGCACACGACCGGTTGCTGTCTCGTTGTGTGCGGCGTCCGCGGTGACGAGCACCCGCATGTGCGCGCGATTCGTATGTG
CTAACCGCCGTCGTGGCCGCTCGTGGTCGGCGGTGGTTCGGGGCCGGGCC--GGGGATGGATACGCTACGCAGTCCCCAC
TTCCATCTCCGACTTTTGTCCCCTCTTCTCTCTCTGCCGTTCCGCAAAGCGACTAACGATTCCAACGGCCAGGAGCACTC
GCCGGCTCGCCTATAAATACCTAGCCGGTAGCAGCTCTCTCTTCACAGCCAAGCAACCATCCATCGG-----TTCCTCAG
CAAGTTCGGTCGGTCGCTTTACCGAGCTAGAAAGGCACCAGCTGCTAGCTAGCTTCGAG--CTCTTTGCAATGGCCTCCG
CCAGTGCTCTGCTCCTGCTCTTCTCGGCCGCCTTCTGCCTCCTCGCCCGGCGGGCCGCCGGCGACTACGGGTCGTGGCAG
AGCGCCCACGCCACCTTCTATGGCGGCGGCGACGCGTCCGGCACAATGGGTGAGCTCATCTTCATCAGGAGTATTATTAC
ACTGTTGAAGCAAA--AAAAGAAGCACCTACCTATACCTAC-----CTGTATTGTATGTGAGTGGTTCCCGACATGAGTG
AATGTAGAACAGTGTCTA---ACTGAAGTGTCCACCTG---------CAGGCGGCGCGTGCGGGTACGGGAACCTGTACA
GCACGGGGTACGGCACGAACACGGCGGCGCTGAGCACGGCGCTGTTCAACGACGGCGCGGCGTGCGGGTCGTGCTACGAG
CTCAAGTGCCAGGACGTGAGCAGCTCCTGCCTGCCGGGCAGCATCACCATCACCGCCACCAACCTCTGCCCGCCCAACTA
CGCGCTGCCCAACGACGACGGCGGCTGGTGCAACCCGCCGCGCGCCCACTTCGACATGGCCGAGCCGGCCTACCTCCAGA
TCGGCATCTACCGCGCCGGCATCGTCGCCGTCGCCTACCGGAGGTGAGCCAGCCAGTTACAAACCTT-TCGCGTGTACAA
ACTTCCTTAATCCGGTC---------------------------------------------------------------
-------------------------------CCGTGTCGGTGTCGATGGACCATGTTAGGTGGGCCAGAGTGC---AGAT
T--TGGTGC--AGTTCGGTCTGACAGCGACTCTCGGTGCTGTTTCGAAATAGTTTAGGCGTCACGCTCACTTGACCACCA
TGATGTGTTCCAACTTCCAAGTTGCATGATCCAA--------------------TCACT--ACTGAAGATTTGTGTTTCA
CCGATTG----------------------------------------------------------------TG-CTGCAG
GGTGCCGTGCGTGAAGAAGGGTGGGATCAGGTTCACCATCAACGGCCACTCCTACTTCAACCTGGTGCTGGTGACGAACG
TGGCCGGCGCCGGCGACGTGCAGTCGGTGGCCATCAAGGGGTCCAGCACCGGGTGGCAGGCCATGGCCCGCAACTGGGGC
CAGAACTGGCAGAGCAACGCGGACCTCGACGGCCAGAGCCTCTCCTTCCGGGTCACCCTCAGCGACGGCCGCACCGTCAC
CAGCAACAACGTCGCCCCCGCCGGCTGGTCCTTCGGCCAGACCTTCGAAGGAAGCCAGTTCTAGCGAGCTGGACGACTTC
TCCTCTCGTCGATGGACGGATTGCTTGCATTGGTTTGGAGCTTGA------GCAAGAGAGGAAGGAAACCTCTTCGTTAT
AGTAAA-GAAGAGGCCTTCGGCTATTCTGAGGCTGCTGCTGACCAGCACCCGCTTAGGCCTCCCCTTCTCTTCATACTAG
TAGCAC-AGTAGTAGACATAAATAAGTTATTACTTATTGTGGAGTTGAGCATTTTGATCATTGTTAGTGTGGCCTTGCGT
TGTGAAAACATCGCAAGGTGA-TCTTATTCAAGGGTACTTTAGAAGTACA--TGCATGGAGTGTTTTGTATTCATGTGTG
AGAGTGTTTTGTAACTTCTGTTGTTGCGTTGTAAACCCCCGAATCCTGCCATATGGTTGGGAGATGTTTGTGGTTGTGGG
GTACACTTGTTATTTTGGGGACCATGAACAATGCTAC-TTTATGGTTTACCCGTTTTATAAGTAGTACTACTAT------
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>chr3D_658
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--------------------------------------------TCAATCAAGAAGGTGTATATTA-TTTTCTTCTCCCC
AGTGGCGAAATCCATGGACTGTAGCTCGTGAGAGCCATGTGG--------GCAGGCGAGCTTAATCTGGAAATTAATTGT
ACACACACGGCCAGTTGCTGTCTCATTGTGTGCA----------------------GCATGTGCGCCCGATTCGAATGTG
CTAACCGCCGTCGTGGTTCCTTGTGCTCGGCGGTTGTTCGGTGCCGGGG-ATGGA-----------TACGCAGTTCCTTC
TCTCA------ACTTTTGTCCCCTTT----TATCTGCCGTTCTACAAAGTGATTAACGATTCCTCAGCA-----------
----------CTATAAATACCTAGCCGGTAGCAGCTCTCTCTTCACAGCCAAGCAACCATCCATCGGCAAGGTTCCTCAG
CAAG-TCGGTCGGTCGCTTTACCGAGCTAGAAAGAGAGTTCGCTCTTC------------------TGCAATGGCCTCCG
CCAATGCTCTGCTCCTGCTCTTCTCGGCCGCCTTCTGCCTCCTCGCCCGGCGGGCCGCCGGCGACTACGGCTCGTGGCAG
AGCGCCCACGCCACCTTCTACGGCGGCGGCGACGCGTCCGGCACAATGGGTGAGCTCATCTTCATCAGGAG---TATTAC
ACTGTTCAGAGTAAAAGC---------------AC--CTAC-----C-----TGGACTGGGATGGTTCCGGGCATAAGTG
-------TACAGTGTCTA---ACTGAAGTGTCCTGTACGTGTTTGTTCAGGCGGCGCGTGCGGCTACGGGAACCTGTACA
GCACCGGGTACGGCACGAACACGGCGGCGCTGAGCACGGCGCTGTTCAACGACGGCGCGGCGTGCGGGTCGTGCTACGAG
CTCAGGTGCCAGGACGTGAGCAGCTCCTGCCTGCCGGGCAGCATCACCATCACCGCCACCAACCTCTGCCCGCCCAACTA
CGCGCTGCCCAACGACGACGGCGGCTGGTGCAACCCGCCGCGCGCCCACTTCGACATGGCCGAGCCCGCCTACCTCCAGA
TCGGCATCTACCGCGCCGGCATCGTCGCCGTCGCCTACCGTAGGTGAGCCATT----------------------TACAA
ACTTCCTTAATCTGGTC---------------------------------------------------------------
-------------------------------CCGTGTCGGTGTCGATGGACCATGTTAGGTGGGCCAGAGTAA---AGAT
T--TGGTGC--AGTTCGGTCTGACAGCGACTCTCGGCGCTGTTTCGAAATAGTTTAGGCGTCACGCTCACTTGACCACCA
TGATGTGTTG----TTCCAAGTTGCATGATCCAA--------------------TCACTGAACTGAAGATTTCCGTTTCG
CCGACTG----------------------------------------------------------------TGTGTGCAG
GGTGCCGTGTGTGAAGAAGGGCGGGATCAGGTTCACCATCAACGGCCACTCCTACTTCAACCTGGTGCTGGTGACCAACG
TGGCCGGCGCCGGCGACGTGCAGTCCGTGGCCATCAAGGGGTCCAGCACCGGGTGGCAGGCCATGGCCCGCAACTGGGGC
CAGAACTGGCAGAGCAACGCGGACCTCGACGGCCAGAGCCTCTCCTTCCGGGTCACCCTCAGCGACGGCCGCACCGTCAC
CAGTAACAACGTCGCCCCCGCCGGCTGGGCCTTCGGCCAGACCTTCGAAGGATCCCAGTTCTAGCGAGCTCGATGACTTC
TTCTTACGTCCATGGATGGATTGCTTGCATTGGTTTGGAGCTTGA------GCAAGAGAAGAAGGAAACCTCTTCGTTAT
AGTAAA-GAAGAGGCCTTCGGCTATTCCGAGGCTGCTGCTGATCAGCACCCGCTTAGGCGTTCCCTTCT-TTCATACTAG
TAGCAC-AGTAGTAGACATAAATAAGTTATTACTTGTTATGGAGTTGAGCATTTTGATCATTGTTAGTGTAGCCTTGCGT
TGTGGAAACACCGCAATGTGG-T-TTATTTAAGGGTGCTTTAGAAGTACA--TGCATTGAGTGG----------TGTGTG
AGAGTGTCTTGTAACTTCTGTTGTTGCATTGTAG-CCCCCAAATCCTGCCACATGGTTGGGAGAAGTTTGTGGTTGTGGG
GTACACTTGTTATTTTGGGGACCAAGAGCAATGCTACTTTTATGGTTTAACCGTTTTATAAGTAGTACTACTAT------
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>chr3B_822
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--------------------------------------------------------GCATGTGCGCCCGATTCGAATGTG
CTAACCGCCGTCGTGGTTCCTCATGCTCGGCGGTGGTTCGGTGCCGGGG-ATGGA-----------TACGCAGTTCCTTC
TCTCA------ACTTTTGTCCCCTTT----TCTCTGCCGTTCCACAAAGTGATTAACGATTCCTCGGCA-----------
----------CTATAAATACCTAGCCGGTAGCACCACACTCTTCACAGCCAAGCAACCATC----GG-----TTCCTGAG
CCAAAC-------------AACCGAGCTAGAAAGACACAGG-----AGCTAGCTTCGCGCTCTCTTTGCAATGGCCTCCG
CCAATGCTCTGCTCTTGCTCTTCTCGGCCGCCTTCTGCCTCCTCGCCCGGCGGGCCGCCGGCGACTACGGCTCGTGGCAG
AGCGCCCACGCCACCTTCTATGGCGGCGGCGACGCGTCCGGCACAATGGGTGAGTTCATC------AGGAG---TATTAC
ACTGTTGAAGTG-A--AAAAAAAGCACCTGCCTAT--CTAC-----CTGTATTGTATGTGGGTGGTTCCCGACATGAGTG
----TAGTACAGTGCCTA---ACTGAAGTG---CCCTG---------CAGGCGGCGCGTGCGGCTACGGGAACCTGTACA
GCACGGGGTACGGCACGAACACGGCGGCGCTGAGCACGGCGCTGTTCAACGACGGCGCGGCGTGCGGGTCGTGCTACGAG
CTCAAGTGCCAGGACGTGAGCAGCTCCTGCCTGCCGGGCAGCATCACCATCACCGCCACCAACCTGTGCCCGCCCAACTA
CGCGCTGCCCAACGACGACGGCGGCTGGTGCAACCCGCCGCGCGCCCACTTCGACATGGCCGAGCCGGCCTACCTCCAGA
TCGGAATCTACCGCGCCGGCATCGTGGCCGTCGCCTACAGGAGGTGAGGCAGCCAGTTACAAACCTTCTCGCGTGCACAA
ACTTCCTTAATCTGGTC---------------------------------------------------------------
-------------------------------CCGTGTCGGTGTCGATGGACCATGTTAGGTGGGCCAGAGTGC---AGAT
T--TGGTGT--AGTTTGGTCTGACAGCGACTCTCGGTGCTGTTTCGAAATAGTTTAGGCGTCACGCTCACTTGACCTCCA
TGATGTGTTG----TTCCAAGTTGCATGATCCAA--------------------TCACTGAACTGAAGATTTCCGTTTCC
CTGGTTG----------------------------------------------------------------TG-GTGCAG
GGTGCCGTGTGTGAAGAAGGGTGGGATGAGGTTCACCATCAACGGCCACTCTTACTTCAACCTGGTGCTGGTGACCAACG
TGGCCGGCGCCGGCGACGTGCAGTCCGTGGCCATCAAGGGGTCCAGCACCGGGTGGCAGGCCATGGCCCGCAACTGGGGC
CAGAACTGGCAGAGCAACGCGGACCTCGACGGCCAGAGCCTCTCCTTCCGGGTCACCCTCAGCGACGGCCGCACCGTCAC
CAGCAACAACGCCGCCCCCGCCGGCTGGTCCTTCGGCCAGACCTTCGAAGGAGCCCAGTTCTAGCGAGCTGGACGAG---
TTCTCTCGTCGATGGACGGATTCCTTGCATTGGTTTGGACGTTTGGACCTTGCAAGAGATGAAGGAAACCTCTTCGTTAT
AGTAAA-GAAGAGGCCTTCGGCTATTCCGAGGCTGCTGCTGATCAGCACCCGCTTAGGCCTCCCCTTCTCT-CATACTAG
TAGGACAAGTAGTAGACATAAATAAGTTATTA-TTGTTGTGGAGTTGAGCATTTCGATCATTGTTAGTGTAGCCTTGCAT
TGTGAAAACATCGCAGGGTGATT-TTATTTAAGGGTGCTTTAGAAGTACA--TGCATTGAGTGG----------TGTGTG
AGAGTGTCTTGTAACTTCTGTTGTTGC------------CGAATCTTGCCATATGGTTGGGAGATGTTTGTGGT-----G
GCACACTTGTTATTTT-GGGACCATGAACAATTCTAG-TTTATGGTTTACCCGTTTGA--AGTGGTAC------------
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>chr1A_1380
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------------------------------------TG---------CAGGCGGGGCATGCGGGTACGGCAACCTGTACA
GCACCGGGTACGGCACGAACACGGCGGCGCTGAGCACGGCGCTGTTCAACGACGGCGCGGCGTGCGGGACGTGCTACGAG
CTGCGCTGCGACAACGCCGGCAGCTCGTGCCGGCCGGGGTCCATCCTGGTGACGGCCACCAACTTCTGCCCGCCCAACTA
CGGCCTCCCCAGCGACGACGGCGGCTGGTGCAACCCGCCGCGCCCCCACTTCGACATGGCCGAGCCGGCCTTCCTCCACA
TCGCGCAGTACCGCGCCGGCATCGTGCCCGTCTCCTACAGAAGGTGAGAAG----------------------------A
AAATCAAAAAAGTTACAGTGTA--------------------CCACGACCGACCGATCGAACCGATGGGTTAAATTGACC
GGGCGTCGGTCGGCTTGAGGATACGCGAGGACCGCGGTTGGTTTGGCCCATAAGTTTGGGCGGGCCACACCGCTGCAGAT
ATGTGATAC--GGTGCACGCCGATAGGCAGGCCACTGTCCACAGTACTTACATCGCATGTGCTGCGCCTTGT--------
------------------------------------------AATGTCGCAGCTTCACTGTCACCGTGTGTCACGTAG--
----------TGCTAATCCTGCATGTTACCCCT-------------------------------TGATCGATG-GAGCAG
GGTGCCGTGCGTGAAGAAGGGGGGCATCCGGTTCACCATCAACGGCCACTCCTACTTCAACCTGGTGCTGGTGACCAACG
TGGGCGGCGCCGGCGACGCGCAGTCCGTGTCCATCAAGGGCACGCGCACCGGCTGGCAGGCCATGTCCCGCAACTGGGGC
ATGAACTGGCAGAGCAACACCTTCCTGGACGGCCAGTGCCTCTCCTTCCGGGTCACCTCCAGCGACGGCCGCACCGTCAC
CAGCAACGCCGCCGCGCCCGCCGGCTGGCACTTCGGCCAGACCTTCGAGGGCGCCCAGTTCTAG----------------
--------------------------------------------------------------------------------
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--------------------------
>chr1B_1380
--------------------------------------------------------------------------------
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------------------------------------TG---------CAGGCGGGGCATGCGGGTATGGCAACCTGTACA
GCACTGGGTACGGCACGAACACGGCGGCGCTGAGCACAGCGCTGTTCAACGACGGCGCGGCGTGCGGGTCGTGCTACGAG
CTGCGCTGCGACAACGCCGGCAGCTCGTGCCGGCCGGGGTCCATCCTGGTGACGGCCACCAACTTCTGCCCGCCCAACTA
CGGCCTCCCCAGCGACGACGGCGGCTGGTGCAACCCGCCCCGACCCCACTTCGACATGGCCGAGCCGGCCTTCCTCCACA
TCGCGCAGTACCGCGCCGGCATCGTGCCCGTCTCCTACAGAAGGTGAGA---------ACAAAGTTT-TCC---GTCAAA
AATGAAAAAAAGTTACAGTGTA--------------------CC------GACCGACCGAACCGATGGGTTAA-TTGACT
GGGCGTCGGTCGGCTTGAAGATACGCGAGGACCGCGGTTGGTTCGGTCCATAAGTTTAGGCGGGCCACACTGCTGCAGAT
T--TGATAC--GGTGCACGCCGATAGGCAGGCTACTGACTACAG---TTACATCGCATGTGCTGCGCCTTTT--------
------------------------------------------AATGTCGCGATTTCAC-GTCACCGTGT--CACGTAGTA
GTACTAAGAGTACTAATCCTGCATGTTACCCCTCGCGATTTCGCACTGACGCGTCGCA----------TGATC-GAGCAG
GGTGCCGTGCGTGAAGAAGGGGGGCATCCGGTTCACCATCAACGGCCACTCCTACTTCAACCTGGTGCTGGTGACCAACG
TGGCCGGCGCCGGCGACGCGCGGTCCGTGTCCATCAAGGGCACGCGCACCGGCTGGCAGGCCATGTCCCGCAACTGGGGC
ATGAACTGGCAGAGCAACACCTTCCTGGACGGCCAGTGCCTCTCCTTCCGGGTCACCTCCAGCGACGGCCGCACCGTCAC
CAGCAACGCCGCCGCGCCCGCCGGCTGGCACTTCGGCCAGACCTTCGAGGGCGCCCAGTTCTAG----------------
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--------------------------
>chr1D_1380
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------------------------------------TG---------CAGGCGGGGCATGCGGGTACGGCAACCTGTACA
GCACCGGGTACGGCACGAACACGGCGGCGCTGAGCACGGCGCTGTTCAACGACGGCGCGGCGTGCGGGACGTGCTACGAG
CTGCGCTGCGACAACGCCGGCAGCTCGTGCCGCCCCGGGTCCATCCTGGTGACGGCCACCAACTTCTGCCCGCCCAACTA
CGGCCTCCCCAGCGACGACGGCGGCTGGTGCAACCCTCCCCGCCCCCACTTCGACATGGCCGAGCCGGCCTTCCTCCACA
TCGCGCAGTACCGCGCCGGCATCGTGCCCGTCTCCTACAGAAGGTGAGC---------ACAAAGTTT-TCTTCTGTCAAA
AATTAAAAAAAGTTACAGTGTAACCACGCGGTCCTGGCTCGACC------GACCGACCGAACCGATGGGTTAA-TTGACC
GGGCGTCGGCCAGCTTGAAGATACGCGAGGACCGCGGTTGGTTCGGCCCATAAGTGTAGGCGGGCCACACTGCTGCAGAT
T--TGATAC--GGTGTACGCCGATAGGCAGGCTACTGTCTACAG----TACATCGCATGTGCTGCGCCTTTT--------
------------------------------------------AATGTCGCGATTTCACTGTCACCGTGT--CACGTAC--
----------TACTAATCCTGCA----------------TTCGCGCTGACGCGTCGCATGATGATGATTGATC-GAGCAG
GGTGCCGTGCGTGAAGAAGGGGGGCATCCGGTTCACCATCAACGGCCACTCCTACTTCAACCTGGTGCTGGTGACCAACG
TGGCCGGCGCCGGCGACGCGCGGTCCGTGTCCATCAAGGGCACGCGCACTGGCTGGCAGGCCATGTCCCGCAACTGGGGC
ATGAACTGGCAGAGCAACACCTTCCTGGACGGCCAGTGCCTCTCCTTCCGGGTCACCTCCAGCGACGGCCGCACCGTCAC
CAGCAACGCCGCCGCGCCCGCCGGCTGGCACTTCGGCCAGACCTTCGAGGGCGCCCAGTTCTAG----------------
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--------------------------
>chr1A_2700
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---------------------------------------------------------------------------TTTTT
TTC--TTGAAAGTACG-CTTAGGCGTATCATATTTTTATAAAAGGTAGAATTTTAATTACAAGAGAGCTACAACTTGCTA
CGAACAACAAGTGTAACAC-AACTTCACACCCAAGCTAGTTCGAATATAGCCATCACAGACAACACAAATACAAAGTAGA
AGTGTCTATCCAAAGCTAAGCAACAACACCGCGTCTCGACCGACGCCGGTCACCTTCGAAGA------CAACTCCAACTG
AACGTCCCTCGTCGATGCATCATCCACCCTTGATGCCTAAAA-GAAGGTGGTGGGGAGATGGAGGAACTTGTTCGGT-CC
AAGGAAAGCACGGGCTTGGGCTCACCGGCAACGACGTACATTGCACTCCTTAAGCTCATCCTTGGACAACGACGAGCACC
GGAGGAGCGCCACATA-GAACCTCGGGTAGTGTCTCCTAACATGATGCTCCCAACGGAGGAACGACGTCGAAGACGCCAC
CATCGCGCCGATCCAACTCCGGACCAAGGCTTTCGCCCGGAGACAACTGCCAACCC------TAAGGGAAAGCAAGGAAG
ATGCCGACACACTCGGTGACGCCTCCAAGGAGGAAAACGACACCCATGAGCACCGTCGCCACCTGCACCGACCGGAGACG
G-------------------------
>chr3D_2714
G-------------------------------------------------------------------------------
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----------AGTACG-TCTAGGTGTATCATATTTTTATAGAAGGCATAATTTCAAGTACAAAAGAAGTACAACTTGCTG
CGAACAACAAGTGTAGCAC-AACTTCACA-CCAAGCTAGTCCAAAGACAGCCACCACAGACAACATAAATACAAAGCAGA
AGTGCCTATCCAAAGCTGAGCATCCTCACCGCGTCTTGACCGATGTCGGTCACCTCCGAAGACAACTCCAACTCCAACTG
AGGGTCCCTCGTGAACGCACCATCCACCCTTGATGCCTAAAA-GGAGGTGACAATTAGATGGCGGAACTTGGTCGGTCCC
AAGAAATGCACCATCTTCAACTAACCGGCGACGAAGTACATTGCAGTCCTAAAGCTCATCCTTGGACAATGAGGAGCACC
GGAGGAGTGCCACATA-GAACCTCAGGTAGTGTCTCCAAACACGATGCTCCCAACAGAGGAACAACGTCGAAAACACCGC
CATCGCGCCGATCTGACTCTGACCCAAGGCTTTCACCCGGAGATAACTACCAACCCCAACCCCAAGTGAGAGCGAGGAAG
A-GCCAACACACTCGGTGACACCTCCAAGGAGGAAAACGACAC-------------------------------------
--------------------------
>chr5D_2725
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---------------------A-CGTATCATATTTTTATAGAAGGCAGAATTTGT-TTACAAGACGACTACAACTCGCTA
CAAACAACGAGTGCAGTACGAACTCCACACCGAGGCTCGTCCAAAGACAGCCACC---GACAGCACAACTACAAAGCAAA
AGGGCCTGTCGTAGACTAGTCACCAAGGCCGCGTCTCAACCGACGCCGGTCACCTCCGAAGAACAACAACCCCCGGCAAC
----TCCCATGCCAATGCACCATCCACTCTTGATGCCGAGAA-GGAGGTGGCAAATGAATGGCAGGACATGGAAAGTCCC
GAAAAAGGCACCGTCTTGGATTCCCCGGCGACGACGTGCATTGCGCCGCTGAAGGTCAATCTTGGACCGCGATGAGCACA
GGAGGAATGCTACATTGGATCTCCAAGCCGTGTCTCCAAACGCGATGCTCCCTGCAGAGGAACGACGCCGAGGACACCGC
CATCGCGCCGATCCAACTCTGAATCTAGGCTTTCGCCCGGAGACAACTACCAACTC------GAAGG-AGAACAAGGGAG
ATGCCGACAGACCTGC-GACGCCTCCAAGGAG------------------------------------------------
--------------------------
>SNPs
SSSS------------------------------------------S--S----------S-------------------
-------------S-----------------------------S------------------------------------
----------------------------------S---------------------------------------------
----------------------------------------------------S---------------------------
-----------------------------S---------------------------------------------S----
---------------------------------------S----------------------------------------
-------------------SSS---S--------------------------------S---------------------
----------------------------------------------------S-------------------------S-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------S------------------------------
------------------------------------------S-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------S---------S----------------------------S------------
--------------------------------------------------------------------------------
----------S--------S----------------------------------------S-------------------
--------------------------------------------------------------------------------
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--------------------------------------------------S-----------------------------
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S--------------------------------SSSSSSSSS-S---S--------------------------------
-----S--------------------------------------------------------------------------
---------------------------------------------S----------------------------------
--------------------------------------------------------------------------------
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-----------S---------S-S--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------S-----SS----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------S-----------S-----------
---SS----S----------S-----------------------S--------------S-------S-S------S---
-------------------------S--------------------S-S-------S--------S--------------
---------------SS---------------------------------------------------------------
------------------------------------S-------------------------------------------
-------S---S--------------------S-S--------------------S------------------------
----------------------------------------S---S--------SS----------------------S--
-S---S-------------------------------------------------------------------S------
-S---------------------------------------------------S--------------------------
--------SS----S----------S
>forward_350
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------TCTGGGACGATTGGTTGTCG--------------------------------------------------
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--------------------------
>reverse_2572
--------------------------------------------------------------------------------
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-----------GTGGACGGATGGATTGCATTG------------------------------------------------
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--------------------------
>forward_2286
--------------------------------------------------------------------------------
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--------------------------TCAGGTTCACCATCAACGGG----------------------------------
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--------------------------
>reverse_3494
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-----------------------------------------------------TTGGAGGAACGACGTCGAAG-------
--------------------------------------------------------------------------------
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--------------------------
