>input_sequence_54085
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--------------------------------ATGACAGGAATTCCGTCTCGCT--------------------------
----------ATGCATCCCTGGAAGAAGGTTTCAGTGAGCATAATCCAAGCACCGGAGTGTTGGCTGACGAAGATGATGG
CGACTCGGATGTGCACGACGGATCTGACATAATGTATGCTATCGAGGAAGTTGAATCCGCCGAGGAAAATGA---TAGCA
GCAGAGGAGCAACGCGACGGCGTACGCAAGTGTAAGTTTGCTAGATTTGCATGAATTCGATTTGCGGAGCAGCACAGGGC
GTCCAATGTTCGTCCTAGTCTGCTAGTTAGGCAGAGCACTCTTCTTTCAGTTCTTTGTGGTGTCCATCCTGACGCAAGCA
AGAAGTCGAGAGTGCGTTAAAAAGTGTGATGCC---------AGTGTGTATGTGATGCTTTTCCGATTGTCAACTTGAGT
TCCTTATGTATTTAAGCTTAAAAGGTTTTTCTGATTTGCCATCCTGAATTAGAATACACAACACCCTGTAATG------T
AGAATCTGTTTGGAGGAGGAACGTTCTACCTCTAGCTGACGGCCAGTGGTTTC-TTTGCGATTAGAACAGACTGTTAG--
--------------------------------------------------------------GCCAATGGTCATTAAGAT
ATAACAAACGGCTACAGGATGATGGGGTCAATTA----------AGACGAGTTGCATTAAATTCATGGTTGGCCGGGCGC
GCGTGCATGCGACGCAGACGGCTC--------------------------------------------------------
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---------------------AGTCTGGCTCATGAAATTGGCTGAGCCGTGGGCGGATTTACTGTTCCGCCTGTACAGTA
CGAGCTGCCATCATATTTAATGCGCCTG--CGACCTGGCCATTTTTATTACAATACCTATGATATACGGAGAGAAAATAC
CATTGACAGCACAGATCCCCATGCTATTGGACGATGTTGATTTCAGGATCATCTGAGCCCGGGCTCAGAAACGAATATCC
GCTCAAACAGTCTCTTCTTACTGATAAAGGCAGGCAGCATTTCTCAAGGGAAGTGGAAGTGATGTCAACGCCCACCCATG
TCAATCTTGCTAAGCTCCTCTACTATTGCCGGGATGGAGAGGAGTGGATACTAGTCTACGAGTGGATGGAGAAAAAAAGT
TTGAATCTTTACATATTTGGTACT-------GCAATGCATGCCATGTTAATCTATCATTATATGT-------ACCCACAA
CTCTTCCTATCTGTGTTTGGCCTCACACACCCATTTGGAAA-TGCAGGAGAAGAC---GGACTCCGCTCCTCACTGAGTT
GGGCACAAAGACGGGAAATAATTCGAGGTGTCGCCGTAGGTGTTGAATTTCTTCACGGCAGAGGATTCATTCACAGGGAT
CTAAAACCTGCCAACATACTGGTCAGTGAC--GTGGGTTCCAAAGATAGCGGACTTCGCCACCGCGAAGCTGTTTATTGA
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--------------------
>chr2D_1_TraesCS2D01G536600
GCCCCTCGGTAGTGCACCACCCAACCGGACGCCATGTCCCTCTAGGCTGGGTGCACTGGGGCAGTCGATTCACAAGTACG
CAGAGGAACCTACAAAA-GTGTAATAAGACCTGAACTTGGCCTAAGTTTCAATTCATTAGGCGAGGC-------------
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------------------------------------------------------TATATGACTTCTACAATCTGTATTCT
TGAGAAATCGGTTTGGGAATTAGGTATGGCAAGATCAGACTGAACGCCAGGAGGACAAAGTTTAATGCAGG-AGATCCTT
TGCGGGTGCTCTATGCGCTCCGATTTTTGCAACCATCCCAATTTGCCATTTGTGTAGGTAGGTTGCCCTCAGTTTGATCT
CCTCAATTTCTAAAATCTGATTGACTGCATGTCATAAACGCGAGGAACTGTTTAATCATCAAGAAATGCTTTGGAGTATG
GAGAACTGGAGTAACACGAGTCGACTTGCGATCAACTGTGCCACCCATGACATATCATT-CTATTTTGTGAAACGGGACT
ATGAATTGGAACTAGGGGTTAGTATTTAAAAAGAAAAAACATGGAGGATCAAAATTGCAGTATGATGCAAATCAACTATT
TCTTCAACGGCAATTCCTCGCTGTAATTTCTTCCTACTTCCTACATAAGTAAAATTAGTAGTGAAGGACTGTAGGCATGT
CATATTTGTTGTAGAAAAAAAAGATTCTTCCTGCAGCAGATACTCCATCGCATTGATCATAGGCATGTCATATCAGTTTT
GCTATAACATTTTTTAAGGTGGATCACCGTGTTTCAAAATCTTAGATCCGCCACTGGTCAATGGTTAGTGCATGGAGCAC
GACTGATCCGCCGGCGCAAGGAGGGGAAGACTAGTATAGGATCTCACATTAGGTGAGATCAATGAGACGGACACCCCTGC
ACAAGGAGGCCAAGGTGATCAAGAATGGTACTGCTAATA--TTTTTTATATGTGTGTCTCCAATCGGTTTTGTTTGAAAC
AAGAACTTGTTGCATTTTCAGGGGGAGGTGATATGACAGGAATTCCGTCTCGCT--------------------------
----------ATGCATCCCTGGAAGAAGGTTTCAGTGAGCATAATCCAAGCACCGGAGTGTTGGCTGACGAAGATGATGG
CGACTCGGATGTGCACGACGGATCTGACATAATGTATGCTATCGAGGAAGTTGAATCCGCCGAGGAAAATGA---TAGCA
GCAGAGGAGCAACGCGACGGCGTACGCAAGTGTAAGTTTGCTAGATTTGCATGAATTCGATTTGCGGAGCAGCACAGGGC
GTCCAATGTTCGTCCTAGTCTGCTAGTTAGGCAGAGCACTCTTCTTTCAGTTCTTTGTGGTGTCCATCCTGACGCAAGCA
AGAAGTCGAGAGTGCGTTAAAAAGTGTGATGCC---------AGTGTGTATGTGATGCTTTTCCGATTGTCAACTTGAGT
TCCTTATGTATTTAAGCTTAAAAGGTTTTTCTGATTTGCCATCCTGAATTAGAATACACAACACCCTGTAATG------T
AGAATCTGTTTGGAGGAGGAACGTTCTACCTCTAGCTGACGGCCAGTGGTTTC-TTTGCGATTAGAACAGACTGTTAG--
--------------------------------------------------------------GCCAATGGTCATTAAGAT
ATAACAAACGGCTACAGGATGATGGGGTCAATTA----------AGACGAGTTGCATTAAATTCATGGTTGGCCGGGCGC
GCGTGCATGCGACGCAGACGGCTC--------------------------------------------------------
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---------------------AGTCTGGCTCATGAAATTGGCTGAGCCGTGGGCGGATTTACTGTTCCGCCTGTACAGTA
CGAGCTGCCATCATATTTAATGCGCCTG--CGACCTGGCCATTTTTATTACAATACCTATGATATACGGAGAGAAAATAC
CATTGACAGCACAGATCCCCATGCTATTGGACGATGTTGATTTCAGGATCATCTGAGCCCGGGCTCAGAAACGAATATCC
GCTCAAACAGTCTCTTCTTACTGATAAAGGCAGGCAGCATTTCTCAAGGGAAGTGGAAGTGATGTCAACGCCCACCCATG
TCAATCTTGCTAAGCTCCTCTACTATTGCCGGGATGGAGAGGAGTGGATACTAGTCTACGAGTGGATGGAGAAAAAAAGT
TTGAATCTTTACATATTTGGTACT-------GCAATGCATGCCATGTTAATCTATCATTATATGT-------ACCCACAA
CTCTTCCTATCTGTGTTTGGCCTCACACACCCATTTGGAAA-TGCAGGAGAAGAC---GGACTCCGCTCCTCACTGAGTT
GGGCACAAAGACGGGAAATAATTCGAGGTGTCGCCGTAGGTGTTGAATTTCTTCACGGCAGAGGATTCATTCACAGGGAT
CTAAAACCTGCCAACATACTGGTCAGTGAC--GTGGGTTCCAAAGATAGCGGACTTCGCCACCGCGAAGCTGTTTATTGA
TGAGCAGACAGACCTGACATTAGTACAGACGCGGTATGATTGAAAACTCCAACCCATCTAATGTTTTCATATTCATGGTA
GACTACCAGGATAA------------------------------------------------ACCTCAATTAACTCCATG
TTTTATGTTAAATGCAGGGGATATGTCGCTCCTGAGTACATAGGGGAAGGGGCCCTGACGTACAAGCGTGATGTATATAG
CTTCGGAGTCG-TCTTGCTGGAGATGTTCAGTGGCAAAAGGAGAACAAGCAATGCAACGTTCCTTCCTGATGTAAGTCTG
CTCATGACAAAACATACTCCTCCCTGATGCATCCTCT-GGTTTCTTCTCAGTGAAAATGGGCGCCACTAGCTGAGCTTTT
TATTCTTTCTTTCTTACACGCCTGGGAATTGTGGAATCAACGTAAGAGCGGGGAGCTTCTTGATTTGGCGGTGGGTGGTG
AACCTGAAGGTGAAGTCTTGTCGGGGCTACTCAGATGCATCCAGATTGGCCTTCTCTGTGTGCAGTATTTGCCAGAGCAC
GGGCCTTCAATGTCTGAAGTTGTGGCAATGCTAAACACCAGCTCACAACTCCCCAGGCCACTGAAACCCACACCAAATAG
CGGACCAGGACCGGGCGCACAGCCCGGACCGAGCCGGACCTTCTTAACGTGGCTATTTTGCTCACGCGGATGTGACCCCG
CGAGTCCAGGCACGGAAGCTACAGTGTAGTGCTTCGGTGTATCAGGGT------GAGGTAGTGGCAGTGCAAGAGGAATA
AGCCT--AAACTTGCTACCGGTCCGGATCCGGGACTTGCGGCATGATTTTGATGTTTATTTGTGTACTTTAACACCGGAT
GTCGCCGTTGTTTTCCTATCTGAATTTGCTGGAACTTGCTGCGGCAA--GATTGTTGGAACTTACTGCCAGCCTGGGAAA
TCGATGTTTTTTTTTTTGAAAAATCGAGCAAATTACTAGCTTGATTCAGATTTAGCAGAAAGCAGCGGAAGAACAACATG
GTGAAGATCCGAAGATCAAA
>chr1B_1
GCCCCTCGGCAGTGCACCACCCAACCGGACGCCATGTCCCTCTAGGCTGGGTGCACTAGGGCAGTCGATTCACAAGTACG
CAGAGGAACCTACAAAAAGTGTAATAAGACCTGAACTTGGCCTAAGTTTCAGTTCATTAGGCGAGGC-------------
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------------------------------------------------------TATATGACTTCTACAATCTGTATTCT
TGAGAAATCGGTTTCGGAATTAGGTATGGCAAGATCAGACTGAACGCCAGGAGGACAAAGTTTAATGCA-G-AGATCCTT
TGCGGGTGCTCTATGCGCTCCGATTTTTGCAACCATCCCAATTTGCCATTTGTGTAGGTTGGTTGCCCTCAGTTTGAACC
CCTCAATTTCTAAAATCTGATTGACTGCATGTCATAAACGCGAGGAACTGTTTAATCATCAAGAAATGCTTTGGAGTATG
GAGAACTGGAGTAACACGAGTCGACTTGCGATTAACTGTGGTACCCATGACTTATCATTTCTGTTTTGTGAAACGGGACT
ATGAATTGGAACTAGGAGTTAGTATTAAAAAAGAAAAAACATGGAGGATCAAAATTGCAGTATGATGCAAATCAACTATT
TCTTCAATGGCAATTCCTTGCTGTAATTTCTTCCTACTTCCTACACAAGTAAAATTAGTAGTGAAGGACTGTAGGCATGT
CATATTTGTTGT--AAAAAAAAGATTCTTCCTGCAGCAGATACTCCATGCCATTGATCATAGGCATGTCATATCAGTTTT
GCTATAACATTTTTTAAGGTGGATCACCGTGTTTCAAAATCTTAGATCCGCCACTGGTCAATGGTTAGTGCATGGAGCAC
GACTGATCCGCCGGCGCAAGGAGGGGAAGACTAGTATAGGATCTCACATTAGGTGAGAGCAATGAGATGGACACCCCTGC
ACAAGGAGGCCAAGGTGATCAAGAATGATACTGCTAATTCTTTTTTTATATGTGTGTCTCCAATCGGTTA-GTCTGAAAC
AAGAACTCGTTGCATTTG-AGGGGGAGGTGATATAACAGGGATTCCGTCTGCTATGATCTTCAAGCAGGAGCTGGATGAC
AAGATAGAAGATGCATCCCTGGAAGAAGGTTTCAGTGAGCATGATCCAAGCACCGGAGTGTTGGCTGACGAAGATGATGG
CGACTCGGATGTGCACAACGGATCGGACATAATGTATGCTATCGAGGAAGTTGAATCCGACGAGGAAAATTATGTTAGCA
GCAGAGGAGCAACGCGACGGCGTATGCAAGTGTAGGTTTGCTAGATTTGCAGGAATTCGATTTGCGGAGCAGCACAGGGC
GTCCAATGTTCGTCCTAGTCTGCTAGTTAGGCAGAGCACTCTTCTTTCAGTTCTTTGTGGTGTCCGTCCTGATGCAAGCA
AGAAGTTGAGAGTGCGTTAAAAAGTGTGATGCC---------AGTGTGTATGTGATGC-TTTCCGATTGTCAACTTGAGT
TCCTTATGTATTTAAGGTTTAAAGGTTTTTCTGATTTTCCATCCTGAATTAGAATACACAACACCCCGTAATG------T
AGAATCTGTTTGGAGGAGGAACGTTCTACCTCTAGCTAACGGCCAGTGGTTTC-TTTGCGATTAGAACAAACTGTTAA--
--------------------------------------------------------------GCCAATGGTCATTAAGAT
ATAACAAACGGCTACAGGATGATGGGGTCAATTAG----------GAGGAGTTGCATTAAATTCATGGTTGGCCGGGCGC
GCGTGCATGCGACGCAGACGGCTC--------------------------------------------------------
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---------------------AGTCTGGCTCACGAAATTGGCTGAGCCGTGGGCGGATTAACTGTTCCGCCCGTACAGTA
CAAGCTGCCATCATATTTAAAGCGCCTG--CGACCTGGCCATTTTTATTACAATACCTATGATATACGGAGAGAAAATAC
CACTGACAGCACAGATCCCCATGCTATTGGACGATGCCGATTTCAGGATCATCTGAGCCCGGGCTCAGAAACGAATATCC
G-------------------------------------------------------------------------------
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>chr3A_1
GCCCGTCGGGAGTGCACCACCCAACCAGACGCCATGTCCCTCTAGGCTGGGTGCACTAGGGCAGTTGATTCACAATTACG
CAGAGGAACCTACAAAAAGTGTAATAAGACCTGAACTTGGCCTAAGTTTCAATTCACTAGGCAAGGCTATATTGAAGGAA
ATATGCCCTAGAGGCAATAATAAAGTTGTTATTTATATTTCCCTGTATCATGATAAATGTTTATTATTCATGCTAGAATT
GTATTAACCAGAAACTTGGTACATGTGTGAATACATAGACAAAACAAAGTGTCCCTAGTATGCCTCTACTAGAATAGCTC
GTTAATCAAAGATGGTTAAGTTTCCTAACCATAGACATGTGTTGTCATTTGATGATTGGGATCACATCATTAGGAGAATG
ATGTGATGGACACGACCCATCCGTTAGCTTAGCATAATGATTGTTAAGTTTTATTGCTATTACTTTCTTCATGACTTATA
CATATTCCTTTGACTATGAGATTATGCAACTCCCGAATCCTGGAGGAATACCTTGTGTTCTATCAAATGTCACAATGTAA
TTGGGTGATTATAAAGATGCTCTACAGGTATCTCCAAAGGCGTTTGTTGGGTTGGCATAGATCAAGATTAGGATTTGTCA
CTCTAAGTATAGGAGAGGTATCTCTGGGCCCTCTCGGTAATGCACATCATGATAAGCCTTGCAAGCAATGTGACTAATGA
GTTAGTTACGGGGATGATGCATTACAGAACGAGTAAAGATACTTTCCTGTAACGAGATTGAACTAGGTATGAAGATACCG
ACAATCGAATCTCGGGCAAGTAACATACCGATGACAAAGGGAATGACGTATATTGTCATTATGGTTTGACCAATAAAGAT
CTTCATAGAATATGTAGGAACCAATATGAGCATCCAGATTCCGCTATTGGTTATTGACCGGAGAGGTGTCTCGGTCATGT
CTACATAGTTCTTGAGCCCGTAGGGTCTGCATGCTTAACGTTCGATGATGATTTGTATTATGAGTTATGTGTTTTGGTGA
CTGAAGATTGTTCGGAGTCCTGGATGAGATCACGGACATGACGAGGATTCTTGAAATGGTCGAGAGGTAAAGATTGATAT
ATTGGACGATAGTATTCGGACACCGGAAGTATTTCGGAAAGTATCGGGTACGTATCAGAGTACCGGGTGGGTTACCGGAA
CCCCCGGGGAAAGATATGGGCCTCATGGGCCATAGGAGGGAGGCAAGGCAGACCACAAGGGGTGCCCCCCCCCCCCGAGG
GAAGGAGTCCGAATTGGACTAGGGGAGGGGGCGCGGCCCCCCTTTCCTTCTCCTACTCCCTCTCCTTCCCCCTTTCCCTT
TCCGGTAAAAGGAAAGTGGGGCCGAATTGGACTAGGAGTCCAAGTGGGACTCCCCTCACTTGGTGCGCCCCCTAGACCGG
CCTCCTCCCCTCTCCCTCCTTTATATACGGGGGCGGGGGGCACCTCTAAGGCACATCAATTGTTCTTAACCGTGTGCGGT
GCCCTCCTCCACCGTTTACTCCTCCGGTCATATTGCCGTAGTGCTTAGGGGAAGCCCTGCGCGGATCACTTCACCATCAT
CATCACCATGCCGCCGTGTCGACGAAACTCCACCTCGACAACTTTGCTAGATCAAGAGTTTGAGGGACGTCATCGAGTTA
AACGTGTGCAGAACTCGGATGTGTCGTACGTTCGGTACTTGATCGGTTGAATCGAGAAGACGTTCGACTACATCAAATGT
GTTAAACTAAAGCTTCCGCTTTCGGTCTACGAGGGTACGTGGACACACTCTCCCCCTCTCGTTGTTATGCATTTCCTAGA
TAGATCTTGCGCGATCGTTGGAAAAAATTTAAATTGCATGCTATGTCCCCAACATATATGACTTCTACATTCTGTATTCT
TGAGAAATCAGTTTCGGAATTAGGTATGGCAAGATCAAACTGAACGCCATGAGGACAAAGTTTAATGCA-GGAGATCCTT
TGTGGGTGCTCTGTGTGCTCCGATTTTTGCGACCATCCCAATTTGTCATTTGTGTAGGTAGGTTGCCCTCAGTTTGAACT
CCTCAATTTCTAAAATCTGATTGACTGCATGTCATGAACATGAGGGGCTGTCTAGTCATCAATAAATGCTTTGGAGTATG
GAGAACTGGAGTAACAAGAGTCGACTTGCGATCAACTATGCCACCCATGACTTATCATTTCTGTTTTGTGAAACGGGACT
ATGAAATGGAACTAGGAGTTAGTATTAAAAAACAAAAAACATGGAGGATCAAAATTGCAGTATGATGCAAATCAACTATT
TCTTCAATGGCAATTCCTCACTCTAATTTCTTCTTAATTCCTACATAAGTAAAATTAGTAGTGAAGGACTGTAGGCATGT
CAAATTTGTTGT--AAAAAAA----TCTTCCTGCAATAGATACTCCATGCCATTGATCAAAGGCATGTCATATTAGTTTT
GCTATAACATTTTT-AAGGTGGATCATCGTGTTTCAAAATCTTAGATCCGCCACTGGTCAACGGCAAGCGCGTGAAGCAC
GACTGAGCCACCGGCGCAAGAAGGGGGAGACTAGTATAGGATCTCGCATTAGGTGAGATCAATGATACAGACACCCTTGC
ACAAGGAGGCCAATGTGATCAACAATGGTAGTGC---TA--TTTTTTATATGTGTGTCTCCAATCGGTTT-GTCTGAAAC
AAGAACTCGTTGCATTTTCAGGGGGAGGTGATACAACTGGAATCCCGTCGGCTATGATCTTCAAGCGGGAGCTGGATGAC
AAGATAGAAGATGCATCCCTAGAAGAAGGTTTCAGTGAGCATGATCTAGGCACCAGAGTGTTGGCTGACGAAGATGATGG
CGACTCGGGTGTGGAGGACGGATCTGACATAATGTATACTATCGAGGAAGTTGAATCCGCTGAGGAAAATGATGTTAGCG
ACAGAGGAGCAACGCGACGGCGTATGACA---TAAGTTTGCTAGATTTGCAGGAATTCTATTTTCAGAGTAGCACATGGC
ACCCAATGTTCGTCCTAGTCTGCTAGTTAGGCAGAGCACTCTTGTTTCAGATCTTTGTGGTGTTCGTCCTGACACAAGCA
AGGAGTC--GAGTGTGTTAAAAAGTGTGATGCA---------TGTGTGTACGTGATGC-TGTCCGATTGTCAACTTGAGT
TCCTTATGTATTTAAGCTTAAAAGGTTTTTCTGATTTGCCATCCCGAATTAGAATAAACAACACTCGTAATGTAGAATAT
AGAATCTGTTTGGATGAGGAACGTTCTACCTCTAGCTGATGGCCAATGGTTTC-TTTGCAATTAGAAAAAACTGTTAG--
--------------------------------------------------------------GCCAATGGTCATTAAGAT
ATAACAAACGGCTATAGGATGATGGGGTTAAT----------TAAGAGGAGTTGCATCAAATTCATGGTTGGCCGGGCGC
GCGTGCACGCAACGCAGCCGGCTT--------------------------------------------------------
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---------------------AGTCTGGCTCACGAAATTGGCTGAGCCATGGGCGGATTAACTGTTCCGCCTGTACAGTA
CCAGCTGCCATCATATTAAATGCGTGTG--CGACCTGGTCATTTT-ATTACAATAC-----CTATGCTGAGAAAAAATAC
CACTGGCAACACAGATCCCCATGCTATTGGGCGATGCTGATTTCGGGACCATCTGAGCCTGGGCTAAAAAACGAATATCC
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>chr1A_1078
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-----------------------------------------------------------------TGACGAAAATGGTGG
CGACTCGGATGTGCATGACGGATCGGACATAATGTACGCTGTGGAGGAAGTTGAATCCGCTGGGGAAAATGATGTTAGCA
GCAGAGGAGCAAAGCGACGGTGTACACAGGCGTAAGTTTCTA----------------GATTTGCAGAGCAGCACAGGCG
-CCCAATGTTCGTCCTAGTCTGCTAGTTAGGCAGGGCACTCTTCTTTCAGTTCTTTGTGGTGTCCGTCCTAACGCAAGCA
AGAATTCGAGAGTGCGTTAACAAGTGTGATGCCATGATGCCCAGTGTGTATGTGATGC-TTTCCGATTGTCAACTTGAGT
TCCTTGTGTATTTAAGCTTAAAAAGCTTTTCTGATTTGTCATCCTGGATTGGAATACACAACACTCCGTAATG------T
AGAATCTGTTTGGAGGAGGAACGTTCTATCTCTGGCTGACGGACAGTGGTTTGTTTTGCGATTAGAAACAACTGTTAGGC
ACGTATTAAAAACATGTTGCCGCTGTTGTTTAAGTTGACTCGTGTTTGATGTTTACGTACGGGCCAATGGTCATTAAGAT
ATAACAAAGGGCTACAGGATGATGGGGTCAATTATAGAAAGCTAAGAGGAGTTGCATTAAATTCATGGTTGGCCGGGTGC
GCGTGAGTGCGACGCAGACGGCTCAGGCTGGTTGTAATGGTGAGTACTACGTTCGTAATCCATAGTATCATAAGTTAGTA
TTTTAAGGTTGCCTTATTAATTGTCATGCATGACACAAAATAGTACAATATTTAATATGATACGGTATCATGATATGATA
CCACACTCTCTCTTTTCTTGTTTAATTATGTGCCACATCATCCAAAAAATCTAGTTGACATACATGATACCATTTATAAT
ACTTCCATTACGACCAGCCTCAGTCTGGCTCACGAAATTGGCTGAGCCGTGGGTGGATTAGCTGTTTCGCCT-----GTA
CGAGCTGCCATCATATTTAATGCGCCTACACGACCTGGCCATTTTTACTATGATACCTAAGCTATACGGAGAGAAAATAC
CACGGACAGCATAGATCCCCATGCTATTGGACGATGCTGATTTCGGGATCATATGAGCCCGGACTCAGAAACGAATATCC
G-------------------------------------------------------------------------------
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>chr2D_1881
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GCTCAAAAAGTTTTATCTTACTGATAAGGGCAAGGAAGATTTCTCAAGGGAAGTGGGAGTGATGTCAACACTCAGGCATG
TCAATCTTGCTAAGCTCCTCTACTATTGCCGGGAAGAAGATGAGTGGATACTAGTCTACGAACTGATGGAGAACAGAAGT
TTGAATCTTTACATATTTGGTACTC---GCTGCAATGCATGACATGTTAATATATCATTATGTACACAC-TAACCCACAA
ATATTCACATCTGTTTTTTGCCTCACACACCTATTTGGAAA-TGCAGGGGAAGAAAACGGATTTCGTTCCTCACTGAATT
GGGCGCAAAGACTGGAAATAATTGGTGGGGTCGCTGTAGGTGTTGAATTCCTTCACAGCAAGGGAGTCATCCACAGGGAT
CTAAATCCTGGCAATATACTTGTCAGTGACACGTGGCATCCCAAGATAACGGACTTTGCCACCATGAAGCTGTTTATTGA
CGAGAAGACAAATCCGGCATTAGTACTGATGCCGTATGATTCAAATTTCCATCTCATTTAATGTTC-CATATTCAAGTTA
GACTACTTGGACATGGACCATACATGATTGTTCCTTTTTTCCAGTTTATCTCTGTCCAAGAGACCTCGATTAACTCCATG
TTTTGTGTTAAATGAAGGGGATATCTCGCTCCAGAGTATTCAGGGGAATGGGCCTTGACGTACAAGTGTGATGTATATAG
CTTCGGAGTCG-TCTTGCTTGAGATAGTCAGTGGCAGAAAGAGAACAGACACGCCAACGCTCCTTCTTCAGGTAAGTCTG
CTGATGACAAAACATACTCC---CTTGTGCATCCTCT-AATTTCCTCCCACTGAAACGGCCGCCGCTA------------
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>chr2B_1881
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GCTCAAACAGTCTCTTCTTACTGATAAAGGCAGGCAGCATTTCTCAAGGGAAGTGGAAGTGATGTCAACGCTCACCCATG
TCAATCTTGCTAAGCTCCTCTACTATTGCCGGGAAGGAGATGAGTGGATACTAGTCTACGAGTGGATGGAGAAAAAAAGT
TTGAATCTTTACATATTTGGTACTC---GTTGCAATGCATGCCATGTTAATCTATCATTATATGT-------ACCCACAA
CTATTCCTATCTGTTTTTGGCCTCACACACCCATTTGGAAAATGCAGGAGAAGAA---GGACTCCGTTCCTCACTGAGTT
GGGCGCAAAGACGGGAAATAATTCGAGGTGTGGCCATAGGTGTTGAATTTCTTCATGGCAGAGGATTCATTCACAGGGAT
CTAAAACCTGCGAACATACTTGTCAGTGATACGTGGGTTCCAAAGATAGCAGACTTTGCCACCGCAAAGCTATTTATTGA
CGAGCAGACAGATTTGACATTAGTACAGACACGGTATGATTAAAATTTCCAACCCATCTAATGTTTTCATATTCATGGTA
GACTACCAGGACAA------------------------------------------------ACCTCAATTAACTCCATG
TTTTGTGTTAAATGCAGGGGATATGTGGCTCCAGAGTATATAGGGGAAGGGGCCCTGACGTACAAGTGTGATGTATATAG
CTTCGGAGTCG-TTTTGCTGGAGACAGTCAGTGGCAAAAGGAGAACAAGCAATGCAATGTTCCTTCCTGATGTAAGTCTG
CTCAGCACAAAACATACTCCTCCCTGGTGCATCCTCT-AGTTTCTCCCCAATGAAAATGG--GCCACTAGCTGAGCTTAT
TATTCTTTCTTTCTTACAGGCCTGGGAATTGTGGAATCAATGTAAGAGCGGGGAGCTTCTTGATGTGGCGGTGGGTGGTG
AACCTGAAGGTGAAGTCTTGTCGGGGCTACTCAGATGCATCCAGATTGGCCTTCTCTGCGTGCAGTATTTGCCAGAGCAT
AGACCTTCAATGTCTGAAGTTGTGGCAATGCTAAACAACAGCTCACAGCTCCCCAGGCCACTGAAACCCACACCAAACAG
CAGACCAGGACCGGGCGCACAGCCAGGACCGAGCCGGACCTTCTTACTGTGGCTATTTTGCTCATGTGGACGTGACCCCA
CGAGCCCAGGCATGGAAGCTACGGTGTAGTGCTTCGGTCTATCAGGGTGAGGCAGAGGCAGTGGCAGTGCAAGAGGAAAT
AAGCCTAAAACTTACTACCGGTCTGGATCTGGAACTTGCGGCATGAATTTGATGTTTATTGGTGTACTTTAACACCAGAT
ATCGCCATTGTTTTCCTGTCTGGATTTGTGCTTTTTCAAAGTACGACGGGATTGTTGGAACTTACTGCCAGCCTTGGAAG
TCGATGTTTTATTCTT----------------------------------------------------------------
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>chr2B_1881
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GCTCAAACAGTCTCTTCTTACTGATAAAGGCAGGCAGCATTTCTCAAGGGAAGTGGAAGTGATGTCAACGCTCACCCATG
TCAATCTTGCTAAGCTCCTCTACTATTGCCGGGAAGGAGATGAGTGGATACTAGTCTATGAGTGGATGGAGAAAAAAAGT
TTGAATCTTTACATATTTGGTACTC---GTTGCAATGCATGCCATGTTAATCTATCATTATATGT-------ACCCACAA
CTATTCCTATCTGTTTTTGGCCTCACACACCCATTTGGAAA-TGCAGGAGAAGAA---GGACTCCGTTCCTCACTGAGTT
GGGCGCAAAGACGGGAAATAATTCGAGGTGCGGCCATAGGTGTTGAATTTCTTCACGGCAGAGGATTCATTCACAGGGAT
CTAAAACCTGCGAACATACTTGTCAGTGACACGTGGGTTCCAAAGATAGCAGACTTTGCCACCGCAAAGCTATTTATTGA
CGAGCAGACAGATTTGACATTAGTACAGACACGGTATGATTAAAATTTCCAACCCATCTAATGTTTTCATATTCATGGTA
GACTACCAGGACAA------------------------------------------------ACCTCAATTAACTCCATG
TTTTGTGTTAAATGCAGGGGATATGTGGCTCCAGAGTATATAGGGGAAGGGGCCCTGACGTACAAGTGTGATGTATATAG
CTTCGGAGTCGGTTTTGCTGGAGACAGTCAGTGGCAAAAGGAGAACAAGCAATGCAACGTTCCTTCCTGATGTAAGTCTG
CTCAGCACAAAACATACTCCTCCCTGGTGCATCCTCT-AGTTTCTCCCCAATGAAAATGG--GCCACTAGCTGAGCTTTT
TATTCTTTCTTTCTTACAGGCCTGGGAATTGTGGAATCAATGTAAGAGCGGGGAGCTTCTTGATGTGGCGGTGGGTGGTG
AACCTGAAGGTGAAGTCTTGTCGGGGCTACTCAGATGCATCCAGATTGGCCTTCTCTGCGTGCAGTATTTGCCAGAGCAT
AGACCTTCAATGTCTGAAGTTGTGGCAATGCTAAACAACAGCTCACAGCTCCCCAGGCCACTGAAACCCACACCAAACAG
CAGACCAGGACCGGGCGCACAGCCAGGACCGAGCCGGACCTTCTTACTGTGGCTATTTTTCTCATGTGGACGTGACCCCA
CGAGCCCGGGCATGGAAGCTACGGTGTAGTGCTTCGGTCTATCAGGGTGAGGCAGAGGCAGTGGCAGTGCAAGAGGAAAT
AAGCCTAAAACTTACTACCGGTCTGGATCTGGAACTTGCGGCATGAATTTGATGTTTATTGGTGTACTTTAACACCAGAT
ATCGCCATTGTTTTCCTGTCTGGATTTGTGCTTTTTCAAAGTACGACGGGATTGTTGGAACTTACTGCCAGCCTTGGAAG
TCGATGTTTTATTCTT----------------------------------------------------------------
--------------------
>chr2B_1881
--------------------------------------------------------------------------------
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GCTCAAACAGTCTCTTCTTACTGATAAAGGCAGGCAGCATTTCTCAAGGGAAGTGGAAGTGATGTCAACGCTTACCCATG
TCAATCTTGCTAAGCTCCTCTACTATTGCCGGGAAGGAGATGAGTGGATACTAGTCTACGAGTGGATGGAGAAAAAAAGT
TTGAATCTTTACATATTTGGTACTC---GTTGCAATGCATGCCATGTTAATCTATCATTATATGT-------ACCCACAA
CTATTCCTATCTGTTTTTGGCCTCACACACCCATTTGGAAA-TGCAGGAGAAGAA---GGACTCCGTTCCTCACTGAGTT
GGGCGCAAAGACGGGAAATAATTCGAGGTGTGGCCATAGGTGTTGAATTTCTTCACGGCAGAGGATTCATTCACAGGGAT
CTAAAACCTGCGAGCATACTTGTCAGTGACACGTGGGTTCCAAAGATAGCAGACTTTGCCACCGCAAAGCTATTTATTGA
CGAGCAGACAAATTTGACATTAGTACAGACACGGTATGATTAAAATTTCCAACCCATCTAATGTTTTCATATTCATGGTA
GACTACCAGGACAA------------------------------------------------ACCTCAATTAACTCCATG
TTTTGTGTTAAATGCAGGGGATATGTGGCTCCAGAGTATATAGGGGAAGGGGCCCTGACGTACAAGTGTGATGTATATAG
CTTTGGAGTCGTTTT-GCTGGAGACAGTCAGTGGCAAAAGGAGAACAAGCAATGCAACGTTCCTTCCTGATGTAAGTCTG
CTCAGCACAAAACATACTCCTCCCTGGTGCATCCTCT-AGTTTCTCCCCAATGAAAATGG--GCCACTAGCTGAGCTTTT
TATTCTTTCTTTCTTACAGGCCTGGGAATTGTGGAATCAATGTAAGAGCGGGGAGCTTCTTGATGTGGCGGTGGGTGGTG
AACCTGAAGGTGAAGTCTTGTCGGGGCTACTCAGATGCATCCAGATTGGCCTTCTCTGCGTGCAGTATTTGCCAGAGCAT
AGACCTTCAATGTCTGAAGTTGTGGCAATGCTAAACAACAGCTCATAGCTCCCCAGGCCACTGAAACCCACACCAAACAG
CAGACCAGGACCGGGCGCACAGCCAGGACCGAGCCGGACCTTCTTACTGTGGCTATTTTGCTCATGTGGACGTGACCCCA
CGAGCCCGGGCATGGAAGCTACGGTGTAGTGCTTCGGTCTATCAGGGTGAGGCAGAGGCAGTGGCAGTGCAAGAGGAAAT
AAGCCTAAAACTTACTACCGGTCTGGATCTGGAACTTGCGGCATGAATTTGATGTTTATTGGTGTACTTTAACACCAGAT
ATCGCCATTGTTTTCCTGTCTGGATTTGTGCTTTTTCAAAGTACGACGGGATTGTTGGAACTTACTGCCAGCCTTGGAAG
TCGATGTTTTATTCTT----------------------------------------------------------------
--------------------
>chr2B_1881
--------------------------------------------------------------------------------
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GCTGAAACACTATCGTCTTACTAATAAAGGCAGGGAACATTTCTCAAGGGAAGTGGAAATGATGTCAAAGCTCATGCATG
CTAATCTTGCTAAGCTCCTCTGCTATTGCCAGGAAGCAGATGAGTGGATATTAGTCTATGAGTGGATGGAGCGCCAGAGT
TTGAATCTCTACATTTTTGGTACTA---GTTCCAATGCATGACATGTTAATCTATCATTATGTACAGATGTAACCCACAA
CTATTCCAATCTGTTTTTGGCCTGACACACCTATTTGGAAA-CGCAGGGGAAGAAAACGGATTCCGTTTCTCACTGAATT
GGGGGCAAAGACTGGGAATAATACGTGGGATCGCCGTAGGTGTTAAATTTCTTCACGGAGAGGGATTCATTCACAGGGAT
CTAAAACCTGGCAATATACTTGTCAGTGACACGTGGCATCCCAAGATAGCGGACTTTGCCACCGCGAAGCTGTTTATCGA
CAAGCAGACAAATCCGACATTAGTACTGACGCCGTATGATTGAAATTTCCAACTCATTTAGTG-TTACATATTCAAGTTA
GACTAC--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------
>chr2A_1881
--------------------------------------------------------------------------------
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GCTGAAACACTATCGTCTTACTAATAAAGGCAGGGAACATTTCTCAAGGGAAGTGGAAATGATGTCAAAGCTCATGCATG
CCAATCTTGCTAAGCTCCTCTGGTATTGCCAGGAAGGAGACGAGTGGATATTAGTCTATGAGTGGATGGAGCGCCAGAGT
TTGAATCTCTACATTTTTGGTACTACTAGTTCCAATGCATGACATGTTAATCTATCATTATGTACAGATGTAACCCACAA
CTATTCCGATCTGTTTTTGGCCTCACACACCTATTTGGAAA-TGCAGGGGAAGAAAACGGATTCCGTTCCTCACTGAATT
GGTCGCAAAGACTGGGAGTAATTCATGGGATTGCCGTAGGCGTTAAATTTCTTCACGCAGAAGGATTCATTCACAGGGAT
CTAAAACCTGGCAATATACTTGTCAGTGACACGTGGCATCCCAAGATAGCGGACTTTGCCACCACGAAGCTGTTTATCGA
TGAGCAGACAAATCCGACACTAGTACTGACGCCGTATGATTGAAATATCCAACTCTTATAGTG-TTACATATTCAAGTTA
GACTACTTGGACATGAAGAATGTATGATTGTTCCTTTTCCCT-GTTTCTCCATGTCCAAGAGACCTGAATTAACCCCATG
TTTTGTGTTAAATGAAGGGGACATGTCGCTCCGGAGTATTCATCGGAAGGGGCCCTGACGTACAAGTGTGATGTATATAG
TTTTGAAGTCCTGTT-GTTGGAGATAGTCAGTGGAAAAAGGAGAACAAGCATTCAAACTTTCCTTCTTCATGTAAGTCTG
CTCATGACAAAACATACTCCTCCCTTATGCATCCTCTTAATTTCTTCCCACTGAAATGG---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------
>SNPs
---------S-----------------------------------------------S----------------------
--------------------------------------------------------------------------------
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--------------S------------------------------------------------------S----------
-----------------------------------------------------------------------------S--
--------------------------------------------------------------------------------
---------------------------------------------------S----------S-----------------
----------------S---------S-----------------------------------------------------
-------S------------------------------------------------------------------------
------------SS----------------------------------SS------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------S--S------
-------S--------------------------S---------------SSSS--------------------------
------------------------------------------S-------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------S----------------------------
-----------------------------------------------------------------S--------------
----------------------------------------------------------S---------------------
------------------------------------------------------------------S-------------
---------------------------------------------------------------------S----------
--------------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------S--------------------------S--------------------
--------------------------------------------------------------------------------
--S---------------------------------S-------------------------------------------
-----------------------------------------------------------------------S--------
----------------------------------S-----S---------------------------------------
--------------------------------------------------------------------------------
--S-----------S---------------------------------------S-----------S-------------
----S---------------------------------------------------------------------------
--------------------S-----------------------------------S-----------------------
------------S--------------------------------SS---------------------------------
-----------S--------------------------------------------------------------------
----S---------------------------S-----S---------------------------S-------------
-------------------------SS-----------------------------------------------------
--------------------------------------S--------S--S---------SS------------------
------------------S---------------------S-----------------------S---------------
----------------------------------------------------------S--------------------S
S-S----------------------------------S---------S-----------------------------S--
-S----------------------S---------------------SS----------------S-S---S--------S
----S-------S---------S---------------S-------------------S-------------------SS
-SS-S--------S---------S-----S--S-------------S-------------S---------------S---
S-----S----------S----S-----SSSSSSS-SSSS-SSSS-S---------------------------S----S
----------S--S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS
>forward_2212
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------CAACTGTGCCACCCATGACA----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------
>reverse_4307
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------CTCCTCACTGAGTT
GGGCAC--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>forward_2773
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------TGACAGGAATTCCGTCTCGC---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>reverse_4851
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------GTGAAAATGGGCGCCACTAG----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
