>input_sequence_54054
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--------------------------------------------------------------ATGGCGGCGTCGCAGGAG
TACATGGACAAGGCGCTGCTCCGGCGGAGCTACCGCAACGTCTGGCAGACCGACCTCACCTGCGCCATCCAGGCGGATTT
CCCATGTGTGTATCCTATCCTGCCAACTTATGAAGTACTGAGTAGATGTTTTGATTTCTCAAGATATGTCAGGACCTGAT
CTTATTTTTTGCGTCCTTTTGTTCTACCTTTTGATGCAGACTGCTGTCTGTCGCTGTGGTGGTGAGTGGGCACTGTTCCG
ATTCTCCGGATCCCAGGCGTTGGAGTTCCCAGCTGATGAATACTAACAAC--TGTATCTGTTTTGTGTTTTGAACTTTTG
ATGTTATCCAGCGGCCCATGCGTCTCTTACATGCTCCGCAGGCGTGCTCTCTACAACGACATGTCGAGGTGAAGCTTAAT
TTTCATTGTTCTAGTGTTTCCTTTGATTTGTAGTACTGGTACAGTTCTCTGTTCTTCAGTCTCGCTCATCCATGCGTCTC
TGTCGGCGTTCCAGATACGTGTGCTGCGCCGGGTACATGCCATGCAGCGGCAGGTGCGGCGAGAGCAAATGCCCAGAACT
ATGCCTCGCAACAGAGGTGCGTGCGTGCGTGACACATGCGTTCTTCTACCTCTTGGCCTCCTCTTAATTTTCAACTCTGA
TCAACCGGATTTGCAGGCGTTCCTCTGCTTCGGCAGCTCGGTTGCTTCGACCAGGTTCCTGCTGCAGGACGAGTTCAACA
TCCAGACGACCCAGTGCGACAACTGCATCATCGTACT----------ACCTCATTCCCACTGCCA---TCGTTTCACAAC
TTCGCAAGTGATCACTTATCATCTCTGAACTCGTTTTGGTTACTGCGTGCGTGCAGAGCTTCATGTTCTGCCTCCAGCAG
CTGGCCTGCATCTGCTCCCTGGTCGCCTGCATCGTCGGCAACCAGGAACTCTCCGAGGCTTCGCAGGCGATCTCCTGCGT
CTCCGACGCGGTCTACTGGACGTAAGACACTCTCTGACTTCTTCCCCAGGCCATTTGAAGAAACCTTCTTTCTGAACTGC
ATGAATTTGTTTGTGCAGGGTTTGCTCCTGTATGCAGGTAATGGCACACGAGCTTCGCTTCGCTTAAACAACTGAAGCTT
TCTTGTTCCTTGATGACATTGAACACTTGAGCCGACGCTGACACGGCGATCGATCTGATGGAATTTTCCAGACGCAGCAC
AAGGTGGAGATGGACAAGAGGGATGGCAAGCTGGGCGGGGCTGCGATGACGGTCCCTCCGACGCAGCAGATGTCACGCAT
CGATCAGCCGATGCCGCCTCAGGTCGGGTATGCGCCGCAGCCAGCGTCCTACAGGTAG----------------------
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>chr1D_1_TraesCS1D01G203000
AGCAGTAAAACTGGCAAGAGTGGGGAAATGGCAAAGCGGTAAAGTGGTAAAAATGTACTAGAGTACTAGGTGCACGCATA
AGCCGGGCCAAATCTTCAGGCTACTTGAGAGAGAGAAACAAATGAAGTAACAAGACTTGATCTGTTTCCTCAAAAGAAGA
AGAAAAGAACAACTTGATCAGCAAACTGGGAAGCCTCTCGAAACTTTCTCAGGGGTTATAAGCACCACCGATTATTTCTG
GTAGGTGTGAATTCCCCTGTGCAGATCGAGAG-GAGGAAACGGAAGGTAGGTCGCCCTTGTGCTGCTCACAGTCATAGAC
CTTGGCGTGTCCCGCGCGGCGGCGCACGGCGGCACGGACGCTCTCCAGTCACGAACTGCATGCATGCTGGACCCATCGTG
CGGACTCTTGCTTCAGAGACTTCACGATCCGGTCATCCTTCGCCTTGGTTTG-----------ATCGCTTGCAATGGAAG
CTTCCAACGTGTACCATCTTCTCACTTTCCAGACGACGACTCTGGCATTGACCGTCGACCATTTCTTCCGGCG-------
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---GCCGACCGGGACTGGCACCAAAGCGCGCCTATCTTAAGCGACTAGCCATCGCCAACCCGCCATTGCTGCCTTGCTAG
ATAAGCTATCCAGAGCTCCCTCGCAGTCGCCGCCAAGACGACCGCGTGGGACCGCGAGGATGCTGAAATGTTCAAGAACC
CTCAACAACGAATATTACAAGTGTACGCGTCGGCTAGGGAGCCTTGACTACGGTGGCCTCCGTGGTCTTTTTTGAGTGTT
TGGCGAGCCTGCACGCTCTGTACGGGCTATGCTTTGTAATTCGATAGTGGCTTGTTAAGCTCCGTCCGAACTTTGTGTCA
TGGGCCGGTGTGGCTTTTGGTTGTTTTAAGACTGGTTGGTGTGCTACTCTGTTGTTGGGGTTTTATTAATTTAAAGCCGG
ATGTATCTGGCGTCTTCATTCTAAAAAAAGAGCCGGAGCAACCCAGCGCGCGCTGCGGCGAGATGGCGGCGTCGCAGGAG
TACATGGACAAGGCGCTGCTCCGGCGGAGCTACCGCAACGTCTGGCAGACCGACCTCACCTGCGCCATCCAGGCGGATTT
CCCATGTGTGTATCCTATCCTGCCAACTTATGAAGTACTGAGTAGATGTTTTGATTTCTCAAGATATGTCAGGACCTGAT
CTTATTTTTTGCGTCCTTTTGTTCTACCTTTTGATGCAGACTGCTGTCTGTCGCTGTGGTGGTGAGTGGGCACTGTTCCG
ATTCTCCGGATCCCAGGCGTTGGAGTTCCCAGCTGATGAATACTAACAAC--TGTATCTGTTTTGTGTTTTGAACTTTTG
ATGTTATCCAGCGGCCCATGCGTCTCTTACATGCTCCGCAGGCGTGCTCTCTACAACGACATGTCGAGGTGAAGCTTAAT
TTTCATTGTTCTAGTGTTTCCTTTGATTTGTAGTACTGGTACAGTTCTCTGTTCTTCAGTCTCGCTCATCCATGCGTCTC
TGTCGGCGTTCCAGATACGTGTGCTGCGCCGGGTACATGCCATGCAGCGGCAGGTGCGGCGAGAGCAAATGCCCAGAACT
ATGCCTCGCAACAGAGGTGCGTGCGTGCGTGACACATGCGTTCTTCTACCTCTTGGCCTCCTCTTAATTTTCAACTCTGA
TCAACCGGATTTGCAGGCGTTCCTCTGCTTCGGCAGCTCGGTTGCTTCGACCAGGTTCCTGCTGCAGGACGAGTTCAACA
TCCAGACGACCCAGTGCGACAACTGCATCATCGTACT----------ACCTCATTCCCACTGCCA---TCGTTTCACAAC
TTCGCAAGTGATCACTTATCATCTCTGAACTCGTTTTGGTTACTGCGTGCGTGCAGAGCTTCATGTTCTGCCTCCAGCAG
CTGGCCTGCATCTGCTCCCTGGTCGCCTGCATCGTCGGCAACCAGGAACTCTCCGAGGCTTCGCAGGCGATCTCCTGCGT
CTCCGACGCGGTCTACTGGACGTAAGACACTCTCTGACTTCTTCCCCAGGCCATTTGAAGAAACCTTCTTTCTGAACTGC
ATGAATTTGTTTGTGCAGGGTTTGCTCCTGTATGCAGGTAATGGCACACGAGCTTCGCTTCGCTTAAACAACTGAAGCTT
TCTTGTTCCTTGATGACATTGAACACTTGAGCCGACGCTGACACGGCGATCGATCTGATGGAATTTTCCAGACGCAGCAC
AAGGTGGAGATGGACAAGAGGGATGGCAAGCTGGGCGGGGCTGCGATGACGGTCCCTCCGACGCAGCAGATGTCACGCAT
CGATCAGCCGATGCCGCCTCAGGTCGGGTATGCGCCGCAGCCAGCGTCCTACAGGTAGTTCTGTGGGGTCTTGGGCTGCC
GTTGCGAGTGGGAAATGGATGGAGATCAAGTAGCTGATATTATGTTCCTCCTGTTT------------------------
--------------------------------------------------TAGTAGGCGAATTTTGAGGCTTGGGGTCAG
CTTAGAACTTGTCATA--TTTTTTGCATCCAAATATTCCAGCAAGTGAGAATGATTATATCCATAGCAATCTACATATGG
AATTTACTCCAGAGGCAGAACAGTCTCGTCATAAAAGGGGAGACCTCTTCTTCTGTCACGGAGAAGAAAATCCCAGCATG
ATAAAGCAAACTCTCACAATCCCAGAAGAGATGCAAAAGAGTTTCCTCAGTGCTTTGTTGACAAAGGCTGCAGTTGTAAT
TATTCATAAAGAAGTCTTTCCTCTTGAGCAGAGCTTTGGTGTTTGTTCTATCGTGGAGAGCCAACCAGACAAAGATCTTA
CGTTTGAGTCTACTTTCATTCTTTCAGTTTTTACTTTTTTTTTGAAAATCACATGGCCTTTAAAGTTCCCCATAAGGTTC
GCATACATTTTGGTGGAGGAGTATTTGTTAGGCTGATCGCTGCAAATCCAGATATCCTTTCCATCCAGCTGAGAGCCCTG
TGGCAAAAGGTTTTGAAGCTCAATGAACTGATCATATGCTT-AACTGAAAATGGCCCATGGAACAGTTCAGAAAGGTCAA
CAGAGGCCTTGACCAATGAAAGAGGCACCATAACATCTTTGGCAAAAGAGTGCAATTCAGGAAATTTATGAGCAAGTGCC
CCATCAGTCCAATTATCACGCGAGAACAATATTGTATCCCCTTCCTCATGCTT---ACACACAGTGTGTTTTGAACATCT
TTCCACCAAAAGGAACCATCAAGTTTATTTTGAAGTGAGCTTGAACCATAATAATTTTTCCCAGATAAGCTTAACTCATG
GTAAATCAGCATTGTTACAGAATTTGTAAAGATGCTTAATAAGCGGAGCTTTATTGTGAGTGGCGACATCCAGAATACCA
AGGCCACGTTGGTCCTTG
>chr1A_129
AACAAGCTACT---------------------------------------------------------------------
--------------------------------------------------------TTGATCCGTTTCCTC-AAAGAAGA
AGAAAAGATCAACCTGATCTGCAAACTGCGAAGCCTCTCCAAACTTTCTTCGGGGTTAAGTACCACCGAT-TTATTTCTG
GTAGGTGTGAATCCCCCTGCGTAGATCAAGAAAGAGGAAACAAAAAGCTCATCGCCCTTCTGCTGCTCAGAAAG------
CTTGGCGTGTCCCGCGCGGC---------CGGCAAGGACGCTCTCAAGTCACGAACTGCC----TGCTGGACCCATCGTG
CGGACTCTTGCTGCAGAGACTTCACGAGCCGGTCATCCTTCGCCTCGGTCTGATCACTGCTTGATCGCATGCAATGGAAG
CTTCCAACGTGCACCATCTTCTCACTTTCCAGGCGACGACTCTGGCATTGACCGTCGACCATTCTTCCGGCGGCCGACCG
GCAGGGGCGGAGCCAGCGCCCGGCCACCCTGGGCACTTGCCCGGGCTCGATGCCTATGCCTACGCGTACGATGTCGTGCG
ACAGCTGGAAAAATTGACGCACGCACCGTGATTTCCCGGGCAGAATTGTGTTGGGCCGGCTTCCGTTGGTAATGGGCTTT
GTAAGAGCTAGGCCTAGCAAGCCAGGTTCGGCTTAATCCCTAGGCTGATACGCACACGCACGCTCGGTTGTTTGTTAATC
GATGTTTCTGTTCGCTAATCGCTCGCCTCCTCCTGCGCTGTTCGGCTGCCTACCGCATGGAAATAGCGCGCCTAGCGGCG
GCGTTCGGAGGCTGGCCTTGGCCTCGGCGAGCGGCCGGCGGCAGGATGAGCAGATCTGTCCCGGGGAAGGCAGGAACGGC
TTGCAACCTTGCCTACTCGTTCCCTCCTTCATAATCAGATTGGGTAAGATTGCTAACTGATGTGCCTATCCACATCTAGG
GCGTAGATTTCAAGGTCAGGCCATTGAAATTTATCCAAGTTAGATCATGATTATAATATTATTCGAACATTTATCGCAAC
AGAGTATCACAAATTGAATCTGCCTCGTGGTTTTTTGTAACACACTATTCTATGTTCCATTTATTCGTACAAGCTCTCTA
TTTTGAATATATCCACAAATTACAACGATCAATTTATGTGAATTCCGAATCTGTTTTCTCATCTTGTAGTATTTTTTAGG
ACATTTGGATGGTAATTTGGATAGCTATATTTTTGCTTGGAACAAGGTGAGTTTGATTCCATGCATAGCCTGGTTTTATG
ACTTTTATTGTCAAGTCTCAAATTTATTTTGTCTATGAAATTGAACATCGATATGTTACATATTAGTCCACTATAAAACT
ACATTTTATGGCTTTGTTTTTTCGTTATTAGTGTCGATTTGTGGTTTTGAAGTTTGGGATTATTTTACATGTTGTATCTA
TCAGAACATCAAATTTTTATTTCGACATTAGACACTTAGGCTAAAGCTTGCCCAGGCTCCAGAAAAATTCTGGCTCCGCC
ACTGCCGACCGGGACTGGCACCAAAGCGCGCCTACCTTAAGCGACCAGCCATCGCCAATTCGCCATTGCTACCTAAGTTA
GCCAC--------AGCTCCCTCGCAGTCGCCGCCAAGACGATCGCGTGGGACCGCGAGAGCCA-----------------
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-----------------------------------GAGCAACCGAGTGCGCGCGGCGGCGAGATGGCGGCGTCGCAGGAG
TACATGGACAAGGCGCTGCTCCGGCGGAGCTACCGCAACGTCTGGCATACCGACCTCACCAACGCCATCCAGGCGGATTT
CCCATGTGCGTATCCTATTCTTCCAACTTATGAAGC----AGTAGCTGTTTTGATTTCTTAAGATATGCCAGGACCTGA-
CTTACTTTTTGTGTCTTTTTGTTCTTCCTTTTGATGCAGACTGCTGTCTGTCGCTGTGGTGGTGAGTGGGCACTGTTCCG
ATCCTCTGGA----------------TCCCAGCTGATGAATTCTAACAAATGTGTATCTGTTTTGTGTTC--------TG
ATGTTATCCAGCGGCCCATGCGTCTCCTACATGCTCCGCAGGCGTGCTCTCTACCACGACATGTCGAGGTGAGGCTTAAA
TTTGATTCTTCTAGTATTTCCTTTGATTT---GTACTGGTGCAGTTCTCTGTTCTTCAGTCTCGCTAATCCATGCGTCTC
TGTCGGCGTTCCAGATATGTGTGCTGCGCCGGGTACATGCCATGCAGCGGCAGGTGCGGCGAGAGCAAATGCCCAGAACT
ATGCCTCGCAACAGAGGT----GCGTGCGTGACACATGCGTTCTTCTACCTCTTGGCCTC---TTGATTTTCAGCTCTGA
TCAACCGGATTTCCAGGCGTTCCTCTGCTTCGGCAGCTCGGTTGCTTCGACCAGGTTCCTGCTGCAGGACGAGTTCAACA
TCCAGACGACCCAGTGCGACAACTGCATCATCGTACTTACCACCATCACCTCATTCCCGCTGCTATCTTCGTTTCACAAC
TTTGCAGGTGATTATAACTTACCTCTGAACCCGTTTTGGTCACTGCGTGCGTGCAGAGCTCCATGTTCTGCCTCCAGCAG
CTGGCCTGCATCTGCTCCCTGGTCGCCTGCATCGTCGGCAACCAGGAGCTCTCCGAGGCTTCGCAGGCGATCTCCTGCGT
CTCCGACACGGTCTACTGGACGTAAGGCACTCTCTGACTTCTTCCCCAGGCCATTTGAAGAAACATTCTTTCTGAACTGC
ATGAATTTGTTTGTGCAGGGTTTGCTCCTGTATGCAGGTAATGGCACGCGAGCTTTGCTTCGCTCAAACAACTGAAGTTT
TCTTATTCCTTGATGACATTGAACACTTGAGCCGACGCTGACACGGCGATCGATCTAATGGAATTTTCCAGACGCAGCAC
AAGGTGGAGATGGACAAGAGGGACGGCAAGCTGGGCGGGGCTGCGATGACGGTCCCTCCGATGCAGCAGATGTCGCGCAT
CGATCAGCCGATGCCGCCTCAGGTCGGGTATGCGCCGCAGCCAGCGTCCAACAGGTAGTTCTGTGGGATCTTGGGCTGCC
GTTGCGAGTGGGAAATGGATGGAGATCAAGTAGCTGATATTATGTTCCTGTTTGTATGCCATTGTGACTTGATTTTTTTT
TGAGAGGCATTATGACTTGATTTATGAGTGTGTAAACTGTCCTCCTGTTATAGTAGGCGAATTTTGAGGCTTGGGGTCAG
CTTAGAATTTTGTCATATTTTTTTGCATCCAAATAT----------------------ATCAATAGCAATCTACGTAGGG
AATTTACTACAGAACCAGAACAGCCTCGTCATAAAAGGAGAGACCTCTTCTTCTGTCACGGAGAAGAAAATCCCAGCATG
ATAAAGCAAACTCAAAG--TCCCAGGAGAGATGCAAAAGAGTTTCCTCAGTGCTTTGTTAACAAAGGCTGCAATTATAAT
TATTCATATAGAAGTCTTTCCTCTTGAGCAGAGCTTTGGTGTTTGTTCTGTCGTGGAGAGCCAACCAGAAAAAGATCTTA
CGTTTGAGTCTACTTTCATTCTTTGAGTTT-----TTTTTTTTGAAAATCACATGGCCTTTAAAGTTTCCCGTAACGTTT
GTATACATTTTGGTGGAGGAGTATTTGTTAGGCTGATCACTGCAAATCCAGATGTCCTTTCCATCCAGCTGGGAGCCCTG
TGGCAAAAGGTTTTGAAGCTCAATGAACTGATCATATGCTTGAACTGAAAATGGCCCATGGAAGAGTTCAGAAAGGTCAA
CAGAGGCCTTGACCAATGAAAGAGGCACCATAACATCTTTGGCAAAAGAGTGCAATTCAGGAAATTTATGAGCAAGTGCC
CCATCAGTCCAATTATCATGCGAGAACAATATTGTATCCCCTTCCTCATGCTTTACACACACAGTGTTGTTTTGAAC---
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>SNPs
-S--SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S--------S--------
--------S----S-----S--------S----------S---------SS-------SSSS-SS-SSSSS---------
------------S------S-S-----S---S---------SS--S-SSSS--------S---------S-SSSSSSSSS
--------------------SSSSSSSSS-----S----------S-------------SSSSS----------------
------------S--------------S-----------------S---S------------------S-----------
-----------S--------------------S------------------------------SS-S-S-SS--------
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----------------------------------S----------S------------SS----------S---SSS-SS
SSS-SSSSSSSSS----------------------------S----------------SSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S--S------S--------------------------
-----------------------------------------------S------------SS------------------
--------S---------S--S-------------SSSSS-----S-------------S--------S----------S
----S------S---S---------S------------------------------------------------------
--S---S---SSSSSSSSSSSSSSSS---------------S-------S-------------------SSSSSSSSS--
--------------------------S---------------------------S-----------------S------S
---S---S-------S-------------SSS--------S-------------------------S-------------
-----------------S--------------------------------------------------------------
------------------SSSS--------------------------------------SSS--S-------S------
------------S-------------------------------------------------------------------
----------------------------------------------------------S----S----------------
--S---S-----S-SSSS-S-S--------S---------S-------------------S-------------------
-----------------------------------------------S--------------------------------
-------S------------------S-------------------------------------S---------------
-----------------------------------------------S-------S--------S------------S--
----S---------------------------------------------------S-----------------------
-----------------------S-------------------------------------S------------S-----
-------------------------------------------------S-----------------S------------
-------------------------------------------------SS-SS-S------------------------
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-------S--SSSSSS--------------------SSSSSSSSSSSSSSSSSSSSSS---S------------S--S--
--------S----SS--------S--------------S-----------------------------------------
-------------SS-SSS------S---------------------------------S------------S--S----
--------S----------------------------------------S-------------------S----------
------------------------S-----SSSSS--------------------------------S---S---S---S
-S------------------------------------S--------------S-----------------S--------
---------------------------------------------------------------S----------------
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------------------S------------------------------------------------SS---SS-SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS
>forward_1874
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--------------GCTCTGTACGGGCTATGCTT----------------------------------------------
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>reverse_3689
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--------CCAGAGGCAGAACAGTCTCG----------------------------------------------------
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