>input_sequence_54009
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----------------------------------------------ATGGTGGCTATGGGTATGGGTTCCACAAAGCGTG
GCGTTGTGTGGTGCGCCGGCCTGCTCGTCACCGGGCTTCTCCTCGTGGCGGCGGAGGCAGATTTCTGCTCCGAGGACTGC
CGTGGCAAGACCGATTTCTTGGGCCGCGCCCGTCGGTGCAGATCTCAGCTTGAGGTTGCACGGCCGACGAACTGCGTCGC
CCTCTGCCATGGCAAGCCGAACTTCATGGCCTGCTGCAATCGCCATCGGTATGCCCGACGAGTGACTCCGCATCTGCAGC
GTCGGGCCGGCAGGGAATCCACAACGCATGAAGAAGAAGCAAGAGGAGGAGCAGTTGGTGTCCTGAAGGCGCCGGCCCCG
GCGCCGTGTGAGGTGGTCTGCCGTGACCGGGTGGGCTGGGTGGAGTACGAGCGCTGCCTCGATCGCTGCCGATGGGGAGC
GTTTGTCCGACGAGC---GCTTCTTCATCTTAAGCTTGCCGGCAGGCAATCGGCGACACATGAAGAAGCAAGAGGAGGAG
GAAGAGGGGAAGCTCACATCCTGACGGCGATGGCGGCGCGGCTCTCGGATCCATGCCAGGACATGTGCCATAACCACAAG
CACTATGACTGGTGCGTCCGTCGCTGCCGGTTTGGGCCGCATCTTAGGCTTGCCGGTGGCGGTGGGGAATCAGAAGAAGC
AAGCGGAGGAGGAGTTGATGTACTGACGGCGACGGCAGCGGGGGCGGCGGCTGACCCACGTATATGCGAGGATTTCTGCC
GTAACTGGCCGGCGCCGGAACACGATTGGTGCCTCGACTTCTGCCTGGCTGGAGACTATGTACAACGAGCGCCTCTGCAT
CTTAAGC---------------------------------TTGCCGGCGGTG---------AGTCAACGACAGAAGAAGA
AGAAGGAGAAGGAAGC---GGAGGAGCGGTTGATGTCCCTCAGGCAGCGGCGGCGGCGGCGGCAGCGCAGGTGCAG---C
ATGAGGCTGTC---------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------GCAGGAACACAGCCGATGAAAAATA
CGGACCCGTGCGATGACTACTGCATGGAGCAAACTCGCTACTTTCCCAGGCCCGGGCAGTTCTTCGATTGCGTCGAGGAG
TGCCACGCTGGTCATGGTCGGCTCGCCGGCGACGGCAGGAATGTGATC---CCGGCGGCGGCGGCGCAACATGAGGCTGC
TGCAGGAGCGCAGCCGGCGAATACCGACCCGTGCGAGGCCTACTGCAAATGGCATGCTCGGGATTTCCCCGCCAAGTACA
CAGCCTGCGTGCGCCAGTGCCAGTCCGGTGGCCACCCCGGCGACGGCGCCCGTG---TCAAGCAGGAACGCCACAAGAAG
GTCGGCGAGGTCCATCTTGGCCGTGGCACCG---GCAAGATAGCCATCCAATAG--------------------------
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---------------
>chr6D_1_TraesCS6D01G009200
TTAGATAACTTAACAACTCAACTCCCCAATGCATATGTGTTTAACTTGTTGTTGGTAAGCTCACTTTATTTAATCATTTA
GCATCTAAACTCTTTCATGTATTGGCCAGCTTCTTTCATGTAAGTGGTTTGCCTAGGTTCATGCGCTTGGCATTGGTTCT
TCCTGGGATACCAAAGTGCTCTCTCTCCTCTTTAATTATTGTGCCATGTCATTTTCTTACTTATATGACATGCTTAGCAC
CTGCTGGATCTATATGCATGCAATCGAGGAGCATCAAAATTGTGCAACTAGTCAGTACCAATTGACCGAATAAATTAGAG
TACAGTTAATAGTAAAGCCAGCTGCCGGCTCTATCTAGTCCTAAGACAGGGACACATGCTGCACAGTTCTCTATAGCCAA
CCTAAGAGCTGATATGTCATCTATAGCCGATCTA-AGAGCCAACCTATATAATA--------------------------
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----------------------------------------------------------------------GTTAGTTATA
AGGTTTCACTGCTTCATCACTACCCAACCTACCTATTCACAATGTTTCTTGAAGCCCATGCTATAGCTGACTACTAATTT
GAAACCTAATTCTCTTCTCTCTCCTCTTCTCTATCCTTAAACTCAGCAAGAATATAATATATAAATACTTATTACTTATA
GCTTGCTTACATCACCTTATTATATTTGCTCCTAAGATCAAGTGTAAATTAGTTTGTTTTAATCTAATCTAGCGATGAGT
ACCTAGTTGATTCTGAAGTTACTTACATGCACATGCATCTGCATCACTGTGTCCCTAAGACAGGGACACATGCTGCACGG
TTCTTCTAATCTAATCTAGCAAGTGG-ATAAACATATGTATACAAGACAAAAAGCAAGTTGATTCTGAATTTCACGCGCG
CAGAGGTCGGATCTGATCTA------------------------------------------------------------
--------------------------------------------------------------------------------
----AAATTCTTAATTGATCGACGGTGTGGGCACTCCACAGATTACTCTATAGGTAGTGCCAAACCGGCCGGTGTTGCTA
ACTTCTTTGTAGAGCCAGGT----AGCTAGTATCACTCAGCTAGCAATGGTGGCTATGGGTATGGGTTCCACAAAGCGTG
GCGTTGTGTGGTGCGCCGGCCTGCTCGTCACCGGGCTTCTCCTCGTGGCGGCGGAGGCAGATTTCTGCTCCGAGGACTGC
CGTGGCAAGACCGATTTCTTGGGCCGCGCCCGTCGGTGCAGATCTCAGCTTGAGGTTGCACGGCCGACGAACTGCGTCGC
CCTCTGCCATGGCAAGCCGAACTTCATGGCCTGCTGCAATCGCCATCGGTATGCCCGACGAGTGACTCCGCATCTGCAGC
GTCGGGCCGGCAGGGAATCCACAACGCATGAAGAAGAAGCAAGAGGAGGAGCAGTTGGTGTCCTGAAGGCGCCGGCCCCG
GCGCCGTGTGAGGTGGTCTGCCGTGACCGGGTGGGCTGGGTGGAGTACGAGCGCTGCCTCGATCGCTGCCGATGGGGAGC
GTTTGTCCGACGAGC---GCTTCTTCATCTTAAGCTTGCCGGCAGGCAATCGGCGACACATGAAGAAGCAAGAGGAGGAG
GAAGAGGGGAAGCTCACATCCTGACGGCGATGGCGGCGCGGCTCTCGGATCCATGCCAGGACATGTGCCATAACCACAAG
CACTATGACTGGTGCGTCCGTCGCTGCCGGTTTGGGCCGCATCTTAGGCTTGCCGGTGGCGGTGGGGAATCAGAAGAAGC
AAGCGGAGGAGGAGTTGATGTACTGACGGCGACGGCAGCGGGGGCGGCGGCTGACCCACGTATATGCGAGGATTTCTGCC
GTAACTGGCCGGCGCCGGAACACGATTGGTGCCTCGACTTCTGCCTGGCTGGAGACTATGTACAACGAGCGCCTCTGCAT
CTTAAGC---------------------------------TTGCCGGCGGTG---------AGTCAACGACAGAAGAAGA
AGAAGGAGAAGGAAGC---GGAGGAGCGGTTGATGTCCCTCAGGCAGCGGCGGCGGCGGCGGCAGCGCAGGTGCAG---C
ATGAGGCTGTC---------------------------------------------------------------------
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-------------------------------------------------------GCAGGAACACAGCCGATGAAAAATA
CGGACCCGTGCGATGACTACTGCATGGAGCAAACTCGCTACTTTCCCAGGCCCGGGCAGTTCTTCGATTGCGTCGAGGAG
TGCCACGCTGGTCATGGTCGGCTCGCCGGCGACGGCAGGAATGTGATC---CCGGCGGCGGCGGCGCAACATGAGGCTGC
TGCAGGAGCGCAGCCGGCGAATACCGACCCGTGCGAGGCCTACTGCAAATGGCATGCTCGGGATTTCCCCGCCAAGTACA
CAGCCTGCGTGCGCCAGTGCCAGTCCGGTGGCCACCCCGGCGACGGCGCCCGTG---TCAAGCAGGAACGCCACAAGAAG
GTCGGCGAGGTCCATCTTGGCCGTGGCACCG---GCAAGATAGCCATCCAATAGGACTGCCCATTTGCCTTTGTTGTATT
GAGCTTAGCCAGCTCGTTTTTTTTTC-CAAATAAAAGAATGGCCGGCTACTCGGCACTGCCACGACGTACGTGGCATTGT
TTGCTTTACTTCTGTTTGCTAAAATAAAGTTTCCATGACCTCATCTAGTTACTACCTCCGTACTGGTTTATCCGTCTCTT
TACTATTTTGTGCCAAACTTTGATCATAGATTTAACTAAGAAAATAATAGTGTATGTCACTAAAAATTATATAGTTGAAT
TCGTATTTGAACATAGTTTGCAGTGATATTAATTTTTGTTACATGCACTAACATTTGTTGGTTAAATTTAAGGTCAAAAT
GTAGTAAAAAATGCGAAGGAAATCAATAAACCAGGACAGAGGTAGTAGTTGACTAAGCATTAATTGCATGCACGAAAGCA
ATAGTATACAGAGATGTGATTCATGTAAATATATAGTACTCCACTACTACCTCCGTTCCAAACTATAAGACATTTTGTTA
GCCTAAACATCTTATAATTTGAAACAGAGGAAATTAATAGCTTGTTAGTTTATCGAAGCAACTGTATACATATCCTTTGA
AACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNAAAGTGGATATACACGTGATTACGGCTATGATAGGCTGGAAATTACCAAGAACCGCCCTAGGTGCCATTGTC
CGTGAAAACTGCGAC
>chr6B_244
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---CTGGATCTATATGCATGCAATCGAGGAGCATCAA--TTGCGCAACTAGCCAGTACCAATTGACCGAATCCATTAGAG
TACAATTAATAGTAAAGCCAGCTGCTGGCTTATCCAGTA-----------------------------------------
----------GACATGTCATCTAGAGCCGACCTAAAGAGCCAACCTATATAATACTCCTCCATCCTAAAATAAATGTCTC
AAGTTTAGCAAGACGTTTCAAGGCTACTCCGGTGACTCCGCGGGCCCCTAGCACCCGCGCCAAGGCCAAGCTGGGAGCAT
TGACGTCGTTGGAAAGCGCTAAACTGCGGCTCGCTGACAAGAACCTGGAGGCTACAGGCTTGGGCGCCATTGGGGAAGCA
GCGCGACGAGGGGCGCATGAACGAGATCATGGAGCAGATCAAAGCATGCACGGCAAGAGCAAGACTTCAAGATCCGCCAG
ATTGAGCTTTTACGTCTAGTATCTTTATGGTTATGTGCTTTTAGCGTCCTCGTGAACTTTAGTCTTCTACTTTGCCAGGA
CTGCGAGCCCGCTGAACTTAAGTGTTATGTTGGTGTGGATTATGCCTGGTTTGGATGCTGCCATGCGTCTACGTTCCAAA
AAAAAGTTTAGTGCAACTTTGTACTAAAATTAGTACATAGTTGAGACACTTATTTTGAGATGAGAGAGTAGTTAGTTATA
AGGTTTAACTGCTTCATCACCCCT------------------------------------------CTGACTACTAATTT
GAAACCTACTTCTCTTCTCT------------------------------------------------------------
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---------TCTAATCTAGCAAGTGGAATAAACATGTCTATACAAGACAAAAAGCAAGTTGATTTTGAATTTCACGCGGG
CAACGGTCGGATCTGATCTACTCCCTCTATTCCTAAATATAAGTCTATTTAGAGATTCCACTACAAACTATATTTTATAG
CGTAGATTCACTCACTTTGCTTCGTATGTAGTCCATTGTAGAATCTCTAAAAAAAGACTTATATTTAGGAACTGAGGAGC
TATAAAATTCTAAACAGATCGACGGTGTAGGCACTCCACCTGTTACTCTATAAGTGGTGCCAAACCGGCCGGTGTTGCTA
ACATCTTTGTAGAACCAAGT----AGCTAGTACCACTCAGCTAACAATGGTGGGTGTGGGTATGGGTTCCACAAAGCGTG
GCCTTGTGTGGTGCGTCGGCCTGCTCGTCGCCGGGCTTGTCCTCCTGGCGGCGGAGGCAGATTTCTGCTCCGAGGACTGC
CGTGGCAAGACCCATTTCTTGGGCTGTGCCCGTCGGTGCAGATCTCAGCTTGAGGTTCTGG-------------------
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------------------------CGGCCATGGCGGCGCGGCTCTCGGATGCATGCCAGGACTTTTGCCATAGCCACGAG
CACTTTGACTGGTGCGTCCGTCGCTGCCGGTTTGGGCCGCATCTTAGGCTTGCCGCTGCCGGTGGGGAATCAGAAGAAGC
AAGCGGAGGAGGAAATGATGACCTGAGGGCGACGGCGGCGGCGAGGAT------CCCGGACAGATGCGTATTCTTCTGCG
GTGACCGGGTCCGGGTGGAGGACTTCAACTCATGCCTCTTTACCTGCCGGACCG------------GAGCGCCCGTGCAT
CATAAGT---------------------------------TTGCCGGCGGTGGGGCCGGGGAATCAACGACACAAGAAGA
AGAAGAAGAAGAAGCGCCAGGAGGAGCGGTTCATGTCCG---------------GGCGGCGGCGGCACAGGTGCAG---C
ATGAGGCTGCTGCTGCAGCACAGCCGATGAATACCGACCCGTGCGAGGCCTACTGCAAAACGCATGCTCGAGATTTTCCC
GCCAAGTACGATGTCTGCGTGCGCCAGTGCCGTTCTGGTGGGCACCCAGGAGGGGAAACAATGGCACAAGATGAAGAAGC
AATCCGAGGATCAGCAGTTGATGTCTCGGCGCCGGCGGCAAATGAGGCTGTCGCAGCAGGAGCACGGCCGATGAAAAATA
CCGACCCGTGCGATGACTACTGCGTGGAGCAAACTCGTTATTTTCCCAGGCCCGGGCAGTTCTTCGATTGCGTCGAGGAG
TGCCACGCTGGTCACGGTAGGCTCGCCGGCGACGGCAGGAGTGGGATC---C----------------------------
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>chr6B_779
CACA----------------------------------------------------------------------------
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-------------------------------------------------------------------------------G
TTCTTCTAATCTAATCTAGCAAGTGG-ATAAACATATCTATACAAGACAAAAAGCAAGTTGATTATGAATTTCACGCGCG
CAGAGGTCGGATCTGATCTA------------------------------------------------------------
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----AAATTCTTAATTGATCGACGGTGTGTGCACTCCATGGATTACTCTATATAAGTAGTGCTAAA--------------
---------TAGAGCCAGGTTGCTAGCTAGTACCACTCAGCTGACAATGGTGGGTATGGGTATGGGTTCCACAAAGCATG
GCGTTGTGTGGTGCGCCGGCCTGCTCGTCGCCGGGCTTCTCCTCGTGGCGGCTGAGGCAGATTTATGCTCCAAGGACTGC
CATGGCAAGACCCATTTCTTGGGCTGCGTCGGTCGGTGCAGATCTCAGCTTGAGGTTGCACGGCCGACGAACTGCATCGC
CCTCTGCCATGGCAAGCCGAGCTTCATTGCCTGCTGCAATGGCTACCGGTATGCCCGACGAGCGCCCATGCAACTGCGTT
GGCCCGGTG---GGGAATCCACAAGGCATGAAGAAGAAGCAGGCGGAGGAGCAGTTGGTGTCCTGAAGGCGCCGGCCCCG
GCGCCGTGTGAAGTGGTCTGCCGTGACCGGGTGGGCTGGGTGGAGTACGAGCGCTGCCTCGATCGCTGCCGATGGGGAGC
GTTTGTCCAACGAGCGCTGCTTCTTCATCTTAAGCTTACCGGCAGGGAATCGGCGACACATGAAGAAGCAAGAGGAGGAG
GA------------------------------------------------------------------------------
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-------GGAGCAGTTGATGTTCTCGCGGCGGCGCTGTCGTCCTTC----------------------------------
-----------------------------TGCGGCGACTACTGCCGAGCGGAAGAACCCAACGTCGACTACAGGTACTGC
GTCCGCCGGTGTGAGTTTGGACCCAGGCGGGCCTCCTCCATTGCCGGCGGGG---------AACCAAAGGCACAACAAGA
AGAAGGAGAAGGAAGCGGAGGAGGAGCGGTTGATGTCCCTCAGGCAGCGGCGGTAGCGGCGGCGGCGCAGGTGCAACACC
ATGAGGCTGTC---------------------------------------------------------------------
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-------------------------------------------------------ACAGGAGCACAGGCGATGAAAAACA
CCGACCCGTGCGATGACTACTGCATGGAGCAAACTCGTTACTTTCCCAGGCCCGGACAGTTCTTCGATTGCGTCGAGGAG
TGCCACGCTGGTCATGGCCGGCTCGCCTATGACTACGGGAATGGGATCCAGCCGGCTGCGGTGGCGCAACATGAGGCTGC
TGCAGGAGCGCAGCCGGCGAATACCGACCCGTGCGAGCCCTACTGCGAATGGCATGCTCGGGACTTCCCCGCGAAGTACA
CAGCCTGTGTGCGCCAGTGCCAGTCCGGTGGGCACCCTGGCGACGTCGGGAACAGGATCAAGCAGGAACAGCGCAAGAAG
CACGACGACATCCATCTTCGCCGTGGCACCGGTAGCAAGATTGCCGTCGAATAGGACTGCCCATTTGCCTTTGTTGTATT
GAGCTTAGCCAGCTCTTTTTTTTTTCTCAAATAAAAGAATGGTCGGCTACTCGGCACTGCC-----------GGCATTGT
TTGCTTTGCTTCTGTTTGCTAAAAGAAAGTTTCCATGAC-----------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS----------------------------------SS---S--------S-------------------SS-------
----S--------------------S----SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS--S----------S------S-------------------------------------------------
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------S-------------SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------
--------S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
-------------------------------------S--------------------------S---------------
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---------------------------------------S------------S--S------------------------
--S-----------------------------S----------S---------S--------------------------
-----------------------------S--------------------------------------------------
------------S-----------S--------------------------------------------------S----
--------------------S------S------------S--S-S----------------S-S-SSS---S----SSS
-S-SS-SS-SSS------------S----------------S-S------------------------------------
-----------S--------------------------------------------------------------------
--------S----------------------------S--------S---------------------------------
--SSSSSSSSSSSSSSSSSSSSSS----S---------------------S-----------S-S-------S----S--
----S--------------------------------------------------S--S---------------------
---------------------S--------------S----S-SS-SSSSSSSS---SSSS-S-----SSSSS------S
--S--S--SSSSS-SS---SS--SSSSSS---SS-----------SS--S-S---SSSSSSSSSSS-------SS-----
--------------------------------------------------------------S---------S-------
-----------------------------------------------------S---------S----------------
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-------------------------------------------------------------S------------------
-S-----------------------------------S------------------------------------------
-------------------------------------------S------------S----S------------------
-------------------------------------S--------S----------------S--------S-------
-------S-----------------------S-----S-------S--SSSSSS---------------SS-S-------
SS--S---SS--------S----------------------S---S--S-------------------------------
---------------S--------------------------S------------------SSSSSSSSSSS--------
-------S----------------S--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS
>forward_168
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--------------------------------------------------------------------GGCATTGGTTCT
TCCTGGGA------------------------------------------------------------------------
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>reverse_2370
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-------------------------------------------------GCTGACCCACGTATATGCGA-----------
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>forward_2182
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--AGAGGGGAAGCTCACATCCT----------------------------------------------------------
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>reverse_4228
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-------------------------------------------------------------------AGGTGCCATTGTC
CGTGAAA--------
