>input_sequence_53965
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----------CGCGCAGTTTCCATTCGTGTCTGCTGCCACAACGTAC--CGTGCGTACCCCTGTCGATTGCCTAC----T
TGGTGGTGATGG-----------GCATGGTTGGCAGCCCGAGAAAGCAGCA---CGGCGGCGGCGGCGGAAGCCACTCGG
CCTCGTTCCTCCTCGGGGCTCTCCTCCCCACGCTCCTGCTCTTCCTCCTCGCCTCCGACCGGGTCGGCGAGCGGCTGGCC
AGCATCTCCACCTACACCTTGGGGAACAACAAT---GGATGGTCATCGGCTCA---TGAGCAGATGATGACCCATGATGC
CAACCTCACGGACACGGA---------GGAGAGGGTGTTCCCGGGGCTGGCGGAGCTGCTGCCGAGGGTGGCCACGGACG
ACGGGACGGTGATCATCACGTCGGTGAACGAGGCGTGGTCGCGGCCGGGCTCCCTCCTCGACCTCTTCCGCGCGGGCTTC
AATAGCGGCGAGGAGATCGCGCACCTCCTCAACCACACCCTCATCGTGGCCGTCGACCCCGGCGCGCTGGCGCACTGCGA
GGCCGTGCACCCGCACTGCTACCTCCTCGAGGTCACCTCCGCCAACGTCAGCTCCGCCAACCGCTTCATGACCAGGAGCT
ACCTGGAGCTGGTGTGGGCCAAGCTGGAGCTCCAGCAGCGCGTCCTCCAGCTCGGCTACAGCTACCTCTTCACCGACGTG
GACATCATGTGGCTGCGCAACCCGTTCCGGCACATCAGCCTCTACGCCGACATGGCCATCTCCACCGACCGGTTCAACGG
CGACG---------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------CCGAGTCCCTGGCGAACGCGCCCAACACCGGCTTCTACTACGTCAAGTCCACCAACCGCACGGTGGAG
ATGGTGAGGCGGTGGCGGGCGGCGCGGTCGCGGTTCCCGCCGA---CCCAGCACGACCAGGCGGTGTTCGACGAGATCAA
GGGCGAGCTGGCGGGCGGCGAGCTGCGGATCAGGTTCGTGTTCCTGGACACGGCGCTCTTCGACGGCTTCTGCCAGCTCC
ACGGCGAGATGGACCGGGTGTGCACCATGCACGCCAACTGCTGCATTGGGCTCGAGAACAAGGTGCACGACCTCACCAA-
---CATGGCCGCCGACTGGAAGAACTACACGAGCC---TAGCGCCGCCGGAGAGAAGGGACAGCGGGCGCACGTGGACGG
CCCCCGCCCAGTGCGAGGAGTCCATGAGCTAGGCAGCGCTGACCCTGACCAGGTCCGGCCGCGTGCATGCATGCATGCCT
GCACGGTTAAGCAGTAG---AGTACTGCAAATCAGCCTTGTAACTCTCAATTGATTAGAAAATCGATCGAAATATTGTGG
GATTTGACTAGATCTAAAATTTAATGAGGATGTGCAAAAGGACTTGTCTC------------------------------
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------------
>chr3A_1_TraesCS3A01G428100
AAGAGACGAAGAGAGAGTGTGGTAAAAAAACTTCAGTCATGAACCCACATATAGACTTCCACCTTGAGCATCCACAATGT
AGGGCTCATTTGGTTTGGAGGAAACTAAAACGTAGGAATTAGGGGTAGTACAAACATTTGATAGGATGATAAATGCCATC
CTAAGGAATTGTCTGTCCCCGTTCTTATGTAAAAAAAAAGAAAGCTTTGAATGGATGTTTAGTTTTCTCAAAACACATAG
GATAGTATTCCTACGGAGTTCGTGTACGGTTTTCCTATGAACTGAATGCATCCACAGAAAAATTTCCTCTTGAATCCTTG
TAAAATTAGTCCGTAGGTACAGCAAAGCTCTCTCATACTAGCACGAATGGACGCGTTGAACCGTTGTCATTGTCAAAAGG
CAGCCCAT------GAAAGAGGCGCCAAAGAGGGAAACGTTGCACCTTAGGTTGACTAGACTTTGAACTTTGCTGTCAAG
CTTCAATCCTTCTACCCCGAGGCTCCGCGACTTTTGCCTTCCAGGATCTGGCCGCCCGGCCGGAACATTTCCAACTCTGG
AAGAGACCGGCCGGTCGATCGAGAACTGGCACGCGCGCTAATTATATTGACTAGTACGTACTCCCTCTGTAAATTAATAT
AAGAACGTTTAGATCACTAAAGTAGTTATCTAAACGCTCTTATTAAGCCAGTTTGACGGTTACTTGTTG--GAGATAGAT
CAAAGCACGTACGTAACTCCATGCTAGCAT---------------------TCGTTGAAAAGTTGTACA--------AAA
CCATGTGGCGTGTGCCGTTGTTTTACCGAATCACGACTAAGACACACGTTGACACAGAGGGCCGAATCCTACGTCGGATC
GAAGCAGGAAGACTAGTTATTTCGCACGCACG---CATCAGGCTGTATATATGGTCGTCG----TTTTGAGGTTTGAAGC
GATCAACGCGCGTCCGTCCTGCGG------AGCCGAGAGAGGTCTCCTTTTAAAGCACCTGCAGATCGACGGCGGTACGT
GCGACAGTGGCGCGCAGTTTCCATTCGTGTCTGCTGCCACAACGTAC--CGTGCGTACCCCTGTCGATTGCCTAC----T
TGGTGGTGATGG-----------GCATGGTTGGCAGCCCGAGAAAGCAGCA---CGGCGGCGGCGGCGGAAGCCACTCGG
CCTCGTTCCTCCTCGGGGCTCTCCTCCCCACGCTCCTGCTCTTCCTCCTCGCCTCCGACCGGGTCGGCGAGCGGCTGGCC
AGCATCTCCACCTACACCTTGGGGAACAACAAT---GGATGGTCATCGGCTCA---TGAGCAGATGATGACCCATGATGC
CAACCTCACGGACACGGA---------GGAGAGGGTGTTCCCGGGGCTGGCGGAGCTGCTGCCGAGGGTGGCCACGGACG
ACGGGACGGTGATCATCACGTCGGTGAACGAGGCGTGGTCGCGGCCGGGCTCCCTCCTCGACCTCTTCCGCGCGGGCTTC
AATAGCGGCGAGGAGATCGCGCACCTCCTCAACCACACCCTCATCGTGGCCGTCGACCCCGGCGCGCTGGCGCACTGCGA
GGCCGTGCACCCGCACTGCTACCTCCTCGAGGTCACCTCCGCCAACGTCAGCTCCGCCAACCGCTTCATGACCAGGAGCT
ACCTGGAGCTGGTGTGGGCCAAGCTGGAGCTCCAGCAGCGCGTCCTCCAGCTCGGCTACAGCTACCTCTTCACCGACGTG
GACATCATGTGGCTGCGCAACCCGTTCCGGCACATCAGCCTCTACGCCGACATGGCCATCTCCACCGACCGGTTCAACGG
CGACGCCGAGTCCCTGGCGAACGCGCCCAACACCGGCTTCTACTACGTCAAGTCCACCAACCGCACGGTGGAGATGGTGA
GGCGGTGGCGGGCGGCGCGGTCGCGGTTCCCGCCGACCCAGCACGACCAGGCGGTGTTCGACGAGATCAAGGGCGAGCTG
GCGGGCGGCGAGCTGCGGATCAGGTTCGTGTTCCTGGACACGGCGCTCTTCGACGGCTTCTGCCAGCTCCACGGCGAGAT
GGACCGGGTGTGCACCATGCACGCCAACTGCTGCATTGGGCTCGAGAACAAGGTGCACGACCTCACCAACATGGCCGCCG
ACTGGAAGAACTACACGAGCCTAGCGCCGCCGGAGAGAAGGGACAGCGGGCGCACGTGGACGGCCCCCGCCCAGTGCGAG
GAGTCCATGAGCTAGGCAGCGCTGACCCTGACCAGGTCCGGCCGCGTGCATGCATGCATGCCTGCACGGTTAAGCAGTAG
AGTAC---------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------TGCAAATCAGCCTTGTAACTCTCAATTGATTAGAAAATCGATCGAAATATTGTGG
GATTTGACTAGATCTAAAATTTAATGAGGATGTGCAAAAGGACTTGTCTCAACAGAAATACGGAATCAGAAACAATAAAC
TGAGTAGAGTGAAGGAGGAATACAACATTAACTCGTGACCAATGATTTAATTA--GCAAGAAACGCATAAAATCTTTTAA
ATCCTTAGCGAATATTTGAGTCTATTGCTGAACATTTTTCTCCAATAACGTGTGTAATCTTTTCCAGGAAAATACATCCA
GCGTTAAATGTTCAATAATACTCGTAATACTGTATCATCCAGTGCGCAGGATGCCCAGTCCAATTTCGCAGGTTTGGCTG
AGCTTCTGCCCAATGTGGCCACGGGCAACCGGACGGTTATCATCACGTCGGTGAACGAGGCGTTCCCGCGGCGGGGCTCC
CTGTTGGGCCTCTTCCGTGAGAGCTTCTTCGCTGGCGAGAAGACCGATTACTTCCTCGACCACCGCTCTTCGTCGATGTG
GAAGCCCGAAGCCATGGCCTACCGCCAAAAATGCTACACTCACGGACTATTTTTACTTAATCAACGGGCTTTCCTTTCCC
CTCTCACTAATCTCAACCCTCTTGATTTTCAGGATGGGTCGGCGTCGTCTAATGCCCAATTAGTGCAACCCACGTCAGCG
TAGCCCCATAAAACGCCCGTAAAGCCCTCGTGAATGTAGCATTGCTCGCCTACCGCCACTGCGAGACCGTGCACCGGGTC
TACTACCTCATCTTTTTTTGGATGAGGAAACGTCTCTGAACCTGTCCTGAGCTCCACCATCAACTTCATGAGCGACCCGT
ACGTGGAGCTCGTGTGGGCCAAGCTGGAGCTCCTACAATGTGTGATTTTTTTTAAAGAGAGGCAAAAGATTTACCTCATT
CATTTAATAAGAGGAATAGAGTTTATGGTTGTGTTACAACACAGACAGCGCCGCAACAACACAAATGAATGTGACCAACT
ACTCTCGCGTCATCAAGTATCCCAACTTTCTAGCACCCGCAGTTACCCAAAGCATGGCCTCCTTCTTTATGTTGGCGAGT
AGGACTATCGGT
>chr3B_359
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------TAGCATGAATCGACGCGTTGAACCGTTGTCATTGTCATTGTC
AAAGAACAGCCCAGGAAAGAGGCGCCAAAGAGGGAAACGTTGCACTTTAGGTTGACTGGACTTTGAACTTTGCTGTCAAG
CTTCAATCCTTCTACCCCAAGGCTCCGCGACTTTTGCCTTCCAGGATCTGGCCGGCTGGCCGGAACATTTCCAACTTTGG
AAGCAACCGGCCGGTCGATCGAGAATTGGCACGCGCGCTACTTATATTGACTACG-------------------------
-------------------------------------------TAGGCCAATTTGACTGTTACTTGTTTTTGAGATAGAT
CAAAGCACGTAA------CCATGCTAGCATACGTTCCTCCGATGTTCCTCCTCGTTGAAAAGTTGTACCACTCCCACAAA
CCTTGTGGCGTGTGCCGTTGTTTTACCGAATCAGGACTAAGACACACGTTGACACAGAGGGCCGAATCCTACGTTGGATC
GAAACAGGAAGACTAGTTATTTCGCGTGCACACATCATCAGGCTGCACATATGGTCGTCGATCGTTTTGAACTTTGAAGC
GATCAACACG----CGTCCTGCGG------AGCCGAGAGAGGTCTCCTTTTAAAGCACCCGCAGATCGACGGCGGTACGT
GCGACAGTGGCACGCAGTTTCCATTTGTGTCTGCTGCCACAACGTAC--CG----AACCCCTGTCGATTACGTACGTACT
TGGTGGTGGTGG-----------ACATGTTGGGCAGTCCGAGAAAGCAGCACGGCGGCGGCGGCGGCGGAAGCCACTCGG
CCTCGTTCCTCCTCGGGGCTCTCCTCCCCACGCTCCTGCTCTTCTTCCTCGCCTCCGACCGGGTCGGCGAGCGGCTGACC
AGCATCTCCACCTACACCTTGGGGAACAACAATAATGGATCGTCATCAGCTCATCGTGAGCA---GATGACCCATGATGC
CAACCTCACGGACACGGACACGACGGAGGAGAGGGTGTTCCCGGGGCTGGCGGAGCTGCTGCCGAGGGTGGCCACGGACG
ACGGGACGGTGATCATCACGTCGGTGAACGAGGCGTGGTCGCGCCCGGGCTCCCTCCTCGACCTCTTCCGCGCGGGGTTC
AACAACGGCGAGGGGATCGCGCACCTCCTCAACCACACCCTCATCGTGGCCGTCGACCCCGGCGCGCTGGCGCACTGCGA
GGCCGTGCACCCGCACTGCTACCTCCTCGAGGTCACCTCCGCCAACGTCAGCTCCGCCAACCGCTTCATGACCAAGAGCT
ACTTCGAGCTCGTCTGGGCCAAGCTGGAGCTCCAGCAGCGCGTCCTCCAGCTCGGCTACAGCTACCTCTTCACC------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-GACGTGGACATCATGTGGCTGCGCAACCCGTTCCGGTACATCAGCCTCTACGCCGACATGGCCGTCTCCACCGACCGGT
TCAACGGCGACGCCGAGGCCCTGACGAACGCGCCCAACACGGGCTTCTACTACGTCAAGTCCACCAACCGCACGGTGGAG
ATGCTGAGGCGGTGGCGGGCGGCGAGGTCGCGGTTCCCGCCGA---CC---CACGACCAGGCGGTGTTCGACGAGATTAA
GGGCGAGCTGGCAGGCGGCGAGCTGCACATCAGGTTCGTGTTCCTCGAGACGGCGCTCTTCGACGGCTTCTGCCAGCTCC
ACGACGAGATGGACCGGGTGTGCACCATGCACGCCAACTGCTGCATCGGGCTCGAGAACAAGGTGCACGACCTCACCAA-
---CATGGCCGCCGACTGGAAGAACTACACGAGCC---TAGCGCCGGCGGAGAGAAGGGGCAGCGGGCGTAGGTGGACGG
CCCCCGACCAGTGCGAGGAGTCCATGAGGCAGCG----------CTGACCAAGTCCGGCCGTGTGCATGCATGCAC----
GCACGGTTAAGCAGTAGAGTA---CTGTAAATCAGCCTTGTAACTCTCAATTGATTAGAAAATC----------------
--------------------------------------------------------------------------------
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------------
>chr3D_757
TACAA---------------------------------------------------------------------------
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-------------------------------------------------------------------------------A
CCATGTGGGGTGTGCCGTTGTTTTACCGAATCACGACTAAGACACATGTTGACACAGAGGGCCGAATCCTACGTCGGATT
GAAACATGAAGACTAGTTATTTCGCACGCACA---CATCAGGCTGCACATATAGTCGTCGATCGTTTTGAACTTTGAAGC
GATCAACACG----CGTGTCCGTCCTGCGTAGCCGAGAGAGGTCTCCTTTTAAAGCACCGGCAGATCGACGGC-------
--------GGCACGCAGTTTCCATTTGTGTCTGCTGCCACAACGTACTACG----TACCCCTGTCGATTACGTACTTACT
TGGTGGTGGTGGTGGACAACTGGACATGATGTGCAGCCCGAGAAAGCAGCA---CGGCGGTGGCGGCGGCAGCCACTCGG
CCTCGTTCCTCCTCGGGGCTCTCCTCCCCACGCTCCTGCTCTTCTTCCTCGCCTCCGACCGGGTCGGCGAGCAGCTGGCT
AGCATATCCACCTACACCTTGGGGAATAACAAT---GGATCGTCATCAGCTCA---TGAGCA---GATGACCCATGATGC
CAACCTCACGGACACGGA---------GAGGGT---ATTCCCTGGGCTGGCGGAGCTGCTGCCGAGGGTGGCCACGGACG
ACGGGACAGTGATCATCACGTCCGTGAACGAGGCGTGGTCGCGGCCGGGGTCCCTCCTGGACCTCTTCCGCGCGGGGTTC
AGGAACGGCGAGGGGATCGCGCACCTCCTCAACCACACCCTCATCGTGGCCGTCGACCCCGGCGCGCTGGCGCACTGCGA
GGCGGTGCACCCGCACTGCTACCTCCTGGAGGTGACCTCCGCCAACGTCAGCTCCGCCAACCGCTTTATGAGCAAGAGCT
ACTTCGAGCTGGTGTGGGCCAAGCTGGAGCTCCAGCAGCGCGTCCTCCAGCTCGGCTACAGCTACCTCTTCAC-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
GGACGTGGACATCATGTGGCTGCGCAACCCGTTCCGGCACATCAGCCTCTACGCCGACATGGCCGTCTCCACCGACCGGT
TCAACGGCGACGCGGAGGCCCTGACGAACGCGCCCAACACGGGGTTTTACTACGTCAAGTCCACCAACCGCACGGTGGAG
ATGGTGAGGCGGTGGCGGGCGGCGAGGTCGCGGTTCCCGCCGA---CC---CACGACCAGGCGGTGTTCGACGAGATCAA
GGGCGAGCTGGCGGGCGGCGAGCTGCGGATCAGGTTCGTGTTCCTGGAGACGGCGCTCTTCGACGGCTTCTGCCAGCTCC
ACGGCGAGATGGACCGGGTGTGCACCATGCACGCCAACTGCTGCATCGGACTCGAGAACAAGGTGCATGACCTCACCAA-
---CATGGCCGCCGACTGGAAGAACTACACGAGCC---TAGCGCCGGCGGAGAGAAGGGGCAGCGGGCGTAGGTGGACGG
CCCCCGACCAGTGCGAGGACTCCATGAGGCAGCG----------CTGACCAAGTCCGGCTGTGTGCATGCATGCAC----
GCACGGTTAAGCAGTAGAGTAGTACTGCAAATCAGCCTTGTAA--------------GAAAATCGATCAAC-TATTGTGG
GATTTGACTAGATCTAA--------GAGGATGTGCAAAAGGACTTGTCTCG--------ACGGAATCAGAACCAATAAAC
TGAGTAGAGTGAAGGAGGAATACAACATTAACTAGTGACCAATGATTTAATTATAGCAAGAAACACATAAAATCTTTTAA
ATGCTTAGAGAATATTTGAGTCTAATGCCGAATA--TTTCTCCAATAATGTGTGTAATTTTTTCCAGGAAACTATATCCA
GCGTTAAATGCTCAATAATCACATCATCCTACTGTA--------------------------------------------
--------------------------------------------------------------------------------
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------------
>chr3A_1294
GGACATGCA-----------------------------------------------------------------------
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---------------GGA---------GGAGAG---GTTCCCAGGGCTCGCGGAGCTGCTGCCAAAGGTGGCCACCGACG
ACGGGACGGTGATCGTAACGTCGGTGAACGAGGCGTGGGCGGCGCCGGGCTCCCTCCTCGACCTATTCCGCAAGAGCTTC
AAGAACGGCGAGGGGATCGCGCACTTGCTCAACCACACCCTCATCGTCGCCGTTGACCCCGGCGCCATGTCCCACTGTGA
GGCCGCGCACCCGCATTGCTACCTCCTCGAGGTCACGTCCGCCAATGTCAGCTCCGCCAACGGCTTCTTCACGGAAAGCT
ACCTTGAGCTCGTCTGGGCCAAGCTCTCCATCCAGCAGCGCGTCCTCCAGCTCGGCTACAACTACCTTTTCACCGTAATG
AGCCAGCTAGCTGCGTATG-CATGCCTCTAAATTATCATTTTTCATTCACATTTCAACAAGTGAACCAAAATGTAATACG
CTTCAAATATATACACTCTGATATTATTTCACAAAAAAAATATACACTCTGATATCGTCAGTTAATGTTATGTCCATGCA
GGATGTGGATGTTATGTGGTTGCGCAACCCGTTCCGGCATATCAGCCTCTACGCCGACATGGCCGTCTCCACCGACCGCT
TCAATGGTGACGCGGAGGCGCTCACAAACGCACCCAACACCGGCTTCTACTACGTCAAGTCCACGAACCGGACGGTGGAA
ATGTTGAGGCGATGGCGCGTGGCGAGATCACGGTTCCCGCCGA---CC---CACGATCAGGCGGTCTTCAACGAGATCAA
GGCCGAGCTCGCCGCTGGAGAGTTGCACAGCAAATTCATGTTCCTGGATACGGCACTCTTCGATGGCTTCTGCCAGTTCC
ATGGCAAGATGGACACGGTGTGCACAATGCACGCCAACTGTTGCATCGGGCTCGAGAACAAGGTGCATGACCTCAGGAA-
---CATGGCTGCCGACTGGAAAAACTACACGAGCCAGGTGATACCGCTGGAGAAGGGGAGTCACGAGTCCAGGTGGTCGT
TCCCCGCCAAGTGCGAGG--------------------------------------------------------------
--------------------------------------------------------------------------------
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------------
>chr3D_1294
GGACATGCA-----------------------------------------------------------------------
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---------------GGA---------GGAGAG---ATTCCCAGGGCTCGCAGAGCTGCTGCCAAAGGTGGCCACCGACG
ACGGGACGGTGATCGTAACGTCGGTGAACGAGGCGTGGGCGGCACCGGGCTCCCTCCTCGACCTATTTCGCGAGAGCTTC
AACAACGGCGAGGGGATCACACACCTCCTCAACCACACCCTCATCGTGGCCGTTGACCCCGGCGCCATGTCCCACTGTGA
GGCCGTGCACCCTCACTGCTACCTCCTCGAGGTCACGTCCGCCAATGTCAGCTCCGCCAACGGCTTCTTCACCGAAAGCT
ACCTTGAGCTCGTCTGGGCCAAGCTCTCCCTCCAGCAGCGCGTCCTCCAGCTTGGCTACAACTATCTTTTCACTGTAA--
-G--------------------------TAAATTATCATTTTTCATTCACATTTCAACAAGTGAACCAAAATGTAATACG
-TTCAAATATACACACTCTGATATT-------------------------------GTCAGTTAATGTTATGTCCATGCA
GGATGTGGATGTTATGTGGTTGCGTAACCCGTTCCGGCATATCAGCCTCTACGCCGACATGGTCGTCTCCACCGATCGCT
TCAGTGGTGATGCGGAGGCGCTCACGAACGCACCCAACACCGGCTTCTACTACGTCAAGTCCACGAACCGGACGGTGGAA
ATGTTGAGGCGATGGCGCGTAGCGAGATCGCGGTTCCCACCGA---CC---CACGACCAAGCGGTCTTCAACGAGATCAA
GGCCGAGCTTGCCGCTGGCGAGCTGGACATCAAGTTCGTGTTCCTTGATACGACACTCTTCGATGGCTTCTGCCAGTTCC
ATAGCAAGATGGACAGAGTGTGCACGATGCACGCTAACTGCTGTATCGGGCTCGAGAACAAGGTGCATGACCTCGGAAA-
---CATGGCTGCCGACTGGAAAAACTACACGA------------------------------------------------
--------------------------------------------------------------------------------
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------------
>chr3B_1294
GGACATGCA-----------------------------------------------------------------------
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---------------GGA---------GGAGAG---ATTCCGAGGGCTCGCAGAGCTGCTGCCAAAGGTGGCCACCGACG
ACGGGACGGTGATCGTTACGTCGGTGAACGAGGCGTGGGCGGCACCGGGCTCCCTCCTCGACCTATTCCGCGAGAGCTTC
AAGAACGGCGAGGGGATCGCGCACCTCCTCAATCACACCCTCATCGTGGCCGTTGACCCCGGCGCCATGTCCCACTGTGA
GGCGGTGCACCCGCATTGCTACCTCCTCGAGGTCACGTCCGCCAATGTCAGCTCTGCCAACCGCTTCTTCACCGAAAGCT
ACCTTGAGCTCGTCTGGGCCAAGCTCTCCCTGCAGCAGCGCGTCCTCCAGCTCGGCTACAACTACCTTTTCACCGTAA--
-GCTAGCTAGCTGCTTATG-CATTCTTCTAAATTATCA-TTTTCATTCACGTTTCAACAAGTGAACCAAAATGTAATAGG
-TTCAAACATACACACTCTGATATC-------------------------------GTCAGTTAAT-TTATGTCCATGCA
GGATGTGGATGTTATGTGGTTGCGTAACCCGTTCCGGCATATCAGCCTCTACGCCGACATGGTCGTCTCCACCGACCGCT
TCAATGGTGACGCGGAGGCGCTCACGAACGCACCCAACACCGGCTTCTACTACGTCAAGTCCACAAACCGGACGGTGGAA
ATATTGAGGAGATGGCGCGTAGCAAGATCACGGTTCCCACCGA---CC---CGCGACCAGGCGGTCTTCAACGAGATCAA
GGCCGAGCTTGCCGCTGACGAGCTGCACATCAAGTTCGTGTTCCTCGATACAACACTCTTCGATGGCTTCTGCCAATTCC
ATAGCAAGATGGACAGGGTGTGCACGATGCACGCTAATTGTTGCATCGGGCTCGAGAACAAGGTGCATGACCTTGGGAAC
ATGCATGGCTGCCGACTGGAAAAACTACACGA------------------------------------------------
--------------------------------------------------------------------------------
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------------
>chr3A_1313
--------------------------------------------------------------------------------
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-------------------------------------TTCCCGGGGCTGGCGGAGCTGCTGCCGAGGGTCGCCATGGACG
ACGGGACGGTGATCATCACGTCGGTGAACGAGGCGTTCGCGCGGCCCGGCTCCCTGCTCGACCTCTTCCGCGGGAGCTTC
CACGACGGCGAGGGGATCGGGCACCTCCTCAACCACACCCTCATCGTCGCCGTTGACCCCGGCGCCTTGGCCCTCTGCAA
GGCCGTGCACCCCCACTGCTACCTCCTGGAGGTCATGGCCGCCGGCGTCAGCTCCGCCAACGGCTTCATGACCAGAAGCT
ACCTCGAGCTCGTCTGGTCCAAGCTCACCTTGCAGCACCGCGTCCTGCAGCTCGGCTACAACTATCTCTACACCGTAA--
-GCTACCAAGCCACACATA-CATGCCTCTGAATCTCTCGTC-----TCACATTTCAACGGATGAACCGAAATT-------
-----------------------------------------------------------------TGTTATGATAATGCA
GGACCTGGATGTGCTGTGGCTGCGCAACCCGTTCCGGCACATCAGCCTCTACGCCGACATGGCCGTCTCGACGGACCGGT
TCAACGGCGACGCCGAGGACCTGACGAACGCGCCCAACACCGGCTTCTACTACGTCAGGTCGACCAACCGCACGGTGGAG
ATGGTGAGGCGGTGGCGGGCGGCGAGGTCGCGGTTCCGGCCGCTGGCC---CACGACCAGGAGGTCTTCGAGGCGATCAA
GGGCGAGTTCGTCGCCGGCGAGCTGCGGATAAAGCTGGTGTTCCTCGACACGGCGCTCTTCGACGGCTTCTGCGAGTACC
ACGGCGAGATGGACCGGGTGTGCACGATGCACGCCAACTGCTGCCTCCGGCTCGCGACCAAGATGCACGACCTCCGGAAC
G----TGGTCGCCGACTGGAAGAGGTACTCGAGCC---TGCCGCCGCCGGAGAAGATGAGCAGCAAGCTCAGGTGGACGT
ACCCCGCCAAGTG-------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------
>chr3D_1313
--------------------------------------------------------------------------------
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-------------------------------------TTCCCGGGGCTGGCGGAGCTGCTGCCGAGGGTCGCCATGGACG
ACGGGACGGTGATCATCACGTCGGTGAACGAGGCGTTCGCGCGGCCGGGCTCCCTGCTCGACCTCTTCCGCGGGAGCTTC
CGCGACGGCGAGGGGATCGCCCACCTCCTCAACCACACCCTCATCGTCGCCGCAGACCCCGGCGCCTTGGCCCTCTGCGA
GGCCGTGCACCCGCACTGCTACCTCCTCCAGGTCATGGCCGCCGGCGTCAGCTCCGCCAACGGCTTCCTGACCAGAAGCT
ACCTCGAGCTCGTCTGGTCCAAGCTCACCTTCCAGCACCGCGTCCTCCAGCTCGGCTACAACTATCTCTACACCGTAA--
-GCTACATAAGCCACCGTGGCTCAAAATA----CTCTCGTC-----TCACATTTCAGTGTTTGATCCGAAATT-------
-----------------------------------------------------------------TGTTATTATGATGCA
GGATCTGGATGTGATGTGGCTGCGCAACCCGTTCCGGCACATCAGCCTCTACGCGGACATGGCCATCTCAACCGACCGGT
TCAACGGCGACGCTGAGGACCTGACGAACGCGCCGAACACCGGCTTCTACTACGTCAGGTCCACGAACCGCACGGTGGAG
ATGCTGAGACGGTGGCGGGCGGCGAGGTCGCGGTTCCGGCCGAAGGCC---CACGACCAGGAGGTCTTCGAGGCGATCAA
GGGCGAGTTCGTCGGCGGCGAGCTGCAGATAAAGCTGGTGTTCCTCGACACGGCGCTCTTCGACGGCTTCTGCGAGTACC
ACGGCGAGATGGACAGGGTGTGCACGATGCACGCCAACTGCTGCCTCCGTCTCGCGACCAAGTTGCACGACCTCAGGAAC
G----TGGTCGCCGACTGGAAGAGGTACTCCAGCC---TGACGCCGCCGGAGAAGATGAGCAGCAAGCTCAGGTGGACGT
ACCCCGCCAAGTG-------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------
>chr3B_1313
--------------------------------------------------------------------------------
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-------------------------------------TTCCCGGGGCTGGCGGAGCTGCTGCCGAGGGTCGCCATGGACG
ACGGGACGGTGATCATCACGTCGGTGAACGAGGCGTTCGCGCGGCCCGGCTCCCTGCTCGACCTCTTCCGCGGGAGCTTC
CGCGACGGCGAGGGGATCGCGCACCTCCTCAACCACACACTCATCGTCGCCGCTGACCCCGGCGCCTTGGCCCTCTGCAA
GGCCGTGCACCCCCACTGCTACCTCCTCCAGGTCATGGCCGCCGGCGTCAGCTCCGCCAACGGCTTCATGACCAGAAGCT
ACCTCGAGCTCGTCTGGTCCAAGCTCACCTTCCAGCACCGCGTCCTCCAGCTCGGCTACAACTATCTCTACACCGTAA--
-GCTAGCTAGACACCCTCACCATTTCTCTAGATTTCTCGTACGT----ACATTTCACCGAATGAAGTGAAATT-------
-----------------------------------------------------------------TG---TTATGATGCA
GGATCTGGATGTGATGTGGCTGCGCAACCCGTTCCGGCACATCAGCCTCTACGCCGACATGGCCGTCTCCACCGACCGGT
TCAACGGCAACGCGGAGGACCTGACGAACGCGCCCAACACCGGCTTCTACTACGTCAGGTCCACCAACCGCACGGTGGAG
ATGCTGAGGCGGTGGCGGGCGGCGAGGTCGCGGTTCCGGCCGCTGGCC---CACGACCAGGAGGTCTTCGAGGCGATCAA
GGGCGAGTTCGTCGGCGGCGAGCTGCGGATAAAGCTGGTGTTCCTCGACACGGCGCTCTTCGACGGCTTCTGCGAGTACC
ACGGCGAGATGGACCGGGTGTGCACGATGCACGCCAACTGCTGCCTCCGGCTCGCGACCAAGATGCACGACCTCAGGAAC
G----TGGTCGCCGACTGGAAGAGGTACTCGAGCC---TGACGCCGCCGGAGAAGATGAGCAGCAAGCTCCGGTGGACGT
ACCCCGCCAAGTG-------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------
>chr3D_2236
AGTATTGCAAATCAGCCCTGTAACTCTCGATTGATTGATTAGAAAATCGATCAAAATTTTGTGGGATTTGACTAGATCTA
-AAATTTAATGAGGATGTGCAAAAAGACTTGCCTCAACGGAATCAGAAACAATAACCGAGTAGAGTGAAGAAGGAATACA
ACATTAACTAGTGACCAACTATATAGTTGGGGTTTAATATA-------------------------------TTACCAAG
ATACACATAAAATCTTTGAAATGCTTCGACAATATTTGAGTCTAACG---CCAAATATTTCTCCAATAATGTGTGTAATC
TTTTCCAGGAAAGTATATCCAGCGTTAAATGTTCAATATTCATAGC-----CCTACTGTAGTACT--ACTCTAGTAACAA
AAAAATGAGAGATATTCTTAGATGTAAATTATGATGGTTATCAATTGACACGTTAGTGTCTGAACTGCGCGCAGGATGCC
CAGTCCAATTTCGCAGGTTTGGCTGAGCTTCTGCCCATGGTGGCCACGG-------------------------------
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-----------------------------------------------------------------------------ACG
ACCGGACGGTGATCATCACGTCGGTGAACGAGGCGTTCGCGCGGTCGGGCTCCCTGCTGGGCCTCTTCCGTGAGAGCTTC
TTCGCCGGCGAGAAGATCGACCACTTCCTCAACCACCTGCTCGTCGTCG-------------------------------
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------------
>chr3B_2236
AGTACTGCGAATCAGCCCTGTAACTCTCAATTGATTGATTAGAAAATGGATCAAAATTTTGTGGGATTCGACTAGATCTA
GAAATTTAATGAGGATGTGCAAAAGGACTTGCCTCGACGGAATCAGAAACAATAACTGAGTAGAGTGAAGGAGGAATACA
ACATTGACTAGTGACCAAGTATATAATTGGGGTTTAATTAATTACCAAGATACACCCCCCGCAATTTTTTTTTTACCAAG
ATACACATAAAATCTTTTCAATGCTTCGAGAATATTTGAGTTTAATACTACCAAATATTTCTCCAATAATGTGTGTAATC
TTTTCCAGGAAAGTATATCCAGCGTTAAATGTTCTATATTCATAGTATCGTCCTACTGTAGTACTGTACTCAAGTAACAA
AAATTGGAGAGATATTCTTAGAGGGAAATTATGATGGTTATGAATTGACACGTTAGTGTGTGAACTGCTTGCAGGATGCC
CAGTCCAATTTCGCAGGTTTGGCTGAGCTTCTGCCCATGGTGGCCACGG-------------------------------
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-----------------------------------------------------------------------------AGG
ACCGGACGGTGATCATCACGTCGGTGAACGAGGCGTTCGCGCGGGCGGGCTCCCTGCTGGGCCTCTTCCGTGAGAGCTTC
TTCGCCGGCGAGAAGATCGAGCACTTCCTCGACCACCTCCTCATCGTCGCCGTGGACCCCATGGCCTACCGCCA------
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------------
>SNPs
--S-SSSS--SSS--SSSSSSSSSSSSS--S-SSSSSSS-SS-SSSS-SSSS-S-S--SSSSSSSSSS-SS-S-S-SSSS
SSSSS-S-S-SS-SS--SSSS---SS-SSSSSSSS--SSS-SSSSS-SSSS-S-SS-SS-SSSS-SSS-S--SSSSS-SS
SS-SS--S-S--SSSSSS-SS-SSSSS--SSSSSS--S-S-SSS-SSS--SSSSSSSSSSSSSS--S-SSSSSS--SS--
SSSSSS--SSSSS-SSS-SSSSSS-S--SSSS-SS-SSSSS--S-SSSS-S-S-SSSSSSSSSSSSSSS-SSSSSSSS-S
-SSSSSSS-SSS---SS-S----SSSSSSSSS---SSS-----S----S----------------------------SSS
S-SSSSSS-------------------------------------S-----------S----------------------
------------------S-----------------------------------S-S-------------------S---
---SS--------------------S--------------S------------SSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S----S------S----------S-----------
-----------SSSSSSS--------------------------------------------------S-----------
--------------------------------------------------------------------------------
---S---------------------------S-------------S-S----------------------SS--------
-------S--SSSS---------------------------------------------S--------------------
-----------S-------------S-------------------------SSSS--------------S-S--------
--------S--------------S----S-S-------------------------------------------------
--------------------------------------------S-----------------------------------
----------------------------------------S------S--------------SSS---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--S-S---------------------------------------------------------------------------
--------------------------------------------------------------------------------
----S----------------------------------------------------------------------SSS--
SS-SS---SS-S-S-----S-S----S-S-S-SS--SSSS---SSSS-SSSS-SSS-SSS-SS-S-S-SSSS--S-SS--
-SS-SSSS-SS-S-SSS-SS-SSSSSSSSSSSSSSSSSSS--SSSSS--SSS-SSSSSS-SSSS-S-S-SSSSSSSSSS-
--SS----SS-S-SSSSS-S-SSSSSSS--SSS-SSS-SSSSSS-S-SSSS--SS-SSSSSSSS-SSSS-SS-SSSSSSS
S-S-SS-SSSS----S---S-S-SSSSSS-SS--SSSSSS----SS-SSSSSSSSSSSSSS-S--SSS-SSSS-SSS--S
SS--S-S-SSS-SSS-SS---SSSSS-SS--S-SSSS--S-S-SS-SSSSSS-S-SS-S-S-SSS-SSSS-S-SSSS-SS
SSSS--SSSSS--SS---SSSSSSS-S-SS-S--SS--S-SSS-S-SS-S--SSSS-SSS--S-SS-SS-SSS-S--SSS
SS-S-S-SSS-SSSS-SSSSSSSSS-SSSS--SSSSS-S-SSSS-SS-S-SS-SS-S-SSSS-SSSSS-SSSSS-S-S-S
-SSSS---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------S-SS--------
-----------------SSSSSSSS-------------------------SSSSSSSSS------------S--------
---------------------------------S------------------------------S---------------
--S-----S---------------S---S---S-SS------------S---------S------------S--S-----
----------S--------SSSSSS-SSSSSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS
>forward_407
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-------------------------------------------------------------------CATTGTCAAAAGG
CAGCCCA-------------------------------------------------------------------------
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>reverse_2239
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------------------------------------------------------------------------------AG
GAGTCCATGAGCTAGGCA--------------------------------------------------------------
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------------
>forward_1903
--------------------------------------------------------------------------------
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-------------------------------------------TACGTCAAGTCCACCAACCG-----------------
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------------
>reverse_3106
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-----------------------------------------------------------------GGGCTTTCCTTTCCC
CTCTC---------------------------------------------------------------------------
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------------
