>input_sequence_53964
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----ATGCTGCCCCTCCAGATGATGATGGTCCTGGTGTCCATGTCTTTG---GTTGTGTCCCCTTCAATGGGCATACCA
ACGGACGACAAGTGCAAGTGCCTCATGTGCGTCTGCGACCTGGATCCGCACCCGCTGCCGCCGGCAATGCCGTCGCGCCA
CCCAGCGCCT------------------TACCCGCCACCGTCGGAGCCAGAGCCAGAGCCAGAGCCAA------------
------AGCCTGAGCCACAGCCGGAACCAGAGCCGGAGCCAA--------------------------------------
----------------------AGCCTGAGCCTGAGCCACAGCCGGAGCCG------GAGCCCGAGCCGAAGCCAAAGCC
ACAGCACTGCCCGCCTCCGCCGGAGCCTGTGCCGACGCCAGTGTACTACTACTACCCACCGCCGTCGGAGCCGGAACCAA
CGCCCGTGTACTACCTTCCACCGCCGGCTGAGCCGTACGTGTACCCGTACGTGCAGCCGGCGCCGGTGTTTGGCATAGTG
GGGACGCCGGGGCAGATGTACCCGCGTGACAGCATGTTCAACCCGTCCAGCGCCCACCGGAAGCTCTGTCGTGGGATATC
CTCCGTAGTTCTCGCCTCCTCGATCGTGGCAGCAGGGCTACTGTCATTGCTCATATAA-TGTACCTAGAATACATTCAGT
CCACAGACTGAACCTGATCAGCAACCAATTGGCATGTAATGCTTCATTCCGCTGACGATGCTACTTCTGTTTTTC---TT
CCCCTTCATTTCAAATGTGTAACTCTGAAAGAAAAA-TGCGAATGATGTGTGACTTTGTATTTGTTCGTGCGTGTGCTGC
AACTGCGCATATTTGTATAGTGAAAACAAATTCCAGTGAGTTCTCCGTCTCTCTCAGCGAGTGCAAGAGAATGGCATGCA
GATTCACAGAAAGTAATAAATCGCAAGAGAAACTAAACTGCATTGTATAAATCTGTACCATGTTTGAAATGATACGATTA
TGTCACCGGATAACAGTTACTACTTGCGTTGTCAGGTCATC-AAAACGCGCACGGAACAAACTGCACTGGTCAGGAAGAG
TTCCCAGGTATACCAATATCATGCCCTGCATCACGTGGCACCTCACCGTATGCAACAAGAGG-TCCAATCAAGAATGGCG
CAGCATCG-----------------CGCACAAGTATTGTATCAAGAGCGAGGGCAAAGACCTTTCAAGAGCGAGGTCGAA
CATCCATCAGAACTGCAGCGTGATCAAGACTGCTGCTCCCAAGACCAAGGCCACAAGGAAGACCCGGCAGGCACACAAGG
CATCGGATCCCGACCGATCATCCGACACAGGCGTCGTCGAGGTCGAATGCTCCTCCATCTTCGGAGTCGGGGACGCTGGT
TCTGTAACGGCAGCTGCAAGGGCATACACAGCAGTTTAA-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------
>chr3A_1_TraesCS3A01G216900
GCCTGAAACCATCATTGACAACCCCCG--CTTGACTTGGTGCAGGAGCCCGTATATTCCCTGGGCGAACTCCAATCCATG
CTTGACGGGATGATGCAGGATTTCACCTCCCCCCAGCCGCCGCCACCAAGCAGCTTCTTCAGCAGCACCAGTTCGTCCAC
GCGGTTCGGCGCACCCAGCGGCGGAGCGCAGCAGCAGCGTCGACCCCCCTCACGCGTACGGCCTCAGGGGTTCGGCAGCT
CGGCATGCTTCAGCCAGACGGCTTTCTCCGGCTGCTAAGCACCTGCGCGATCTGCATCGCAGTTCATGCGTCCGTGGG--
------------------GATCACCGGCGTGAAGACGCTGAGTTGCAGAGACTGGGAGAG------ACAGGGAACGTCGA
GCGCTCTAGCGATGCACACGGCGGGAGCCGGTACTGTACATC-ACCCACTGGATGAGCGGAATAAAGAAGACGGTAGATA
TTTCTAGTTGACAGCAACTCGAAAGGATTTCCATTGTTAGTTTTTCTTAGATAGATCGTAGGTGTACATAGATGAGAA-C
AGAAGTGAAGACATGATGTTTTGCACTGTGGTGTGTATTTACTTCAAAAGCAAGCACGATGACACGTGTGGGAGTTGTCA
GAAACAAAAAATCAGTAAAGAGTACGTGT-------TTTTCATCTAGAACCTGCTTGTCCCCCCACTTGTTCTCTGGTTC
CGTCG-------AGCCGAATGATGCGTGAACGTAACCAACAACAGTGGCAACTTACAACGAGGACCGAATAGGAATAGAT
TACCTTTTTCCATAAGAAAGAAATGACACTAATATTTGGTTCGGTTGGGTGCCTAGCTTTGCAGAAACAGAGCGTGTATC
ACACATAAACCCTAGAAATTATCTGTAGTTGCACCAGCATACCAATACCAATTTAGGATATGCACCAGCAACTAAGGCTT
GGTTATCCATTTCATATATAAGGCGATGTTGGATTCACGGCCTACTGAGACTAGTTGAGATCTGCCTGTTAGCAATC-AA
CCCAAATGCTGCCCCTCCAGATGATGATGGTCCTGGTGTCCATGTCTTTG---GTTGTGTCCCCTTCAATGGGCATACCA
ACGGACGACAAGTGCAAGTGCCTCATGTGCGTCTGCGACCTGGATCCGCACCCGCTGCCGCCGGCAATGCCGTCGCGCCA
CCCAGCGCCT------------------TACCCGCCACCGTCGGAGCCAGAGCCAGAGCCAGAGCCAA------------
------AGCCTGAGCCACAGCCGGAACCAGAGCCGGAGCCAA--------------------------------------
----------------------AGCCTGAGCCTGAGCCACAGCCGGAGCCG------GAGCCCGAGCCGAAGCCAAAGCC
ACAGCACTGCCCGCCTCCGCCGGAGCCTGTGCCGACGCCAGTGTACTACTACTACCCACCGCCGTCGGAGCCGGAACCAA
CGCCCGTGTACTACCTTCCACCGCCGGCTGAGCCGTACGTGTACCCGTACGTGCAGCCGGCGCCGGTGTTTGGCATAGTG
GGGACGCCGGGGCAGATGTACCCGCGTGACAGCATGTTCAACCCGTCCAGCGCCCACCGGAAGCTCTGTCGTGGGATATC
CTCCGTAGTTCTCGCCTCCTCGATCGTGGCAGCAGGGCTACTGTCATTGCTCATATAA-TGTACCTAGAATACATTCAGT
CCACAGACTGAACCTGATCAGCAACCAATTGGCATGTAATGCTTCATTCCGCTGACGATGCTACTTCTGTTTTTC---TT
CCCCTTCATTTCAAATGTGTAACTCTGAAAGAAAAA-TGCGAATGATGTGTGACTTTGTATTTGTTCGTGCGTGTGCTGC
AACTGCGCATATTTGTATAGTGAAAACAAATTCCAGTGAGTTCTCCGTCTCTCTCAGCGAGTGCAAGAGAATGGCATGCA
GATTCACAGAAAGTAATAAATCGCAAGAGAAACTAAACTGCATTGTATAAATCTGTACCATGTTTGAAATGATACGATTA
TGTCACCGGATAACAGTTACTACTTGCGTTGTCAGGTCATC-AAAACGCGCACGGAACAAACTGCACTGGTCAGGAAGAG
TTCCCAGGTATACCAATATCATGCCCTGCATCACGTGGCACCTCACCGTATGCAACAAGAGG-TCCAATCAAGAATGGCG
CAGCATCG-----------------CGCACAAGTATTGTATCAAGAGCGAGGGCAAAGACCTTTCAAGAGCGAGGTCGAA
CATCCATCAGAACTGCAGCGTGATCAAGACTGCTGCTCCCAAGACCAAGGCCACAAGGAAGACCCGGCAGGCACACAAGG
CATCGGATCCCGACCGATCATCCGACACAGGCGTCGTCGAGGTCGAATGCTCCTCCATCTTCGGAGTCGGGGACGCTGGT
TCTGTAACGGCAGCTGCAAGGGCATACACAGCAGTTTAACTAGTGCACACCAAGTAAGACCGACGATTCAAGAAAGATAT
TCAGGACTTGCGGTGTTCAGTCGACCAAAATGGAATGCTCAGGTGAACAAAATAGAAG-----GTGCAGCTGCAACCTAA
AAGAGCAGTGCACGCAAAGCAGATAGTATCACAAAGACAGACTCGGTCCTGCAATTAGTAGGAACAGAACAGAGGCTGCA
GAGAGTATCCGATGCAAAATTAGTTGTTCTACTATCATTTGAACCTGTACAGTTGTGGCATAGAACACGAAATGGATGGA
GCACCACAAGATAAAACAAGTTCAAGTTTCATTTGGT---AGGAGAGGACATATGACATGTCTGCCCAAATGCCAATTGG
TTCATTCAACCGAAATCCGAAATAGCATTACTGGGCACAGATTTATGGAATCA--TTTTTTTTAACAAGCTATGGAATCA
TTAGACAAGCAGCAGAACATTTACCTGGAGAAAGTTTTGGTGCGGGAGGTGGCGATGGAGGTGTAAAATGCATCTCAGGC
AGTGACTTGAGCTCTGTTTCAATTGGCAAATGGCAAATGGAGTTAGCCAGTACTACTAATACTTGCCCCCTTAATTGAAT
TTAATAATTGACTTTTGTGAACTCTTTGAGAGAAACCACCAAGTAACGAAGCCCTTAGCTATTTATAAATATCGCCAATA
TTTTGTGAAATTACTACTACTATCAAACAAGCAACCCAACAAACTGCTTAAATCAACGGTAATCATGACAAATCGCAGCA
AAAACGCAGAAGTAAGTCTGGGCCACTCAGTATCTTCTCCTTAATAACAAAAGAAAAATCCCGCGGTGTTTCTCCCCCAT
TCCACTAGTTCAGTAATGCAAGTGCTAATATCCCTAGTAGCATTCAGAGCTCGTCAGTAATCCGCATTACAACCAACCAT
TACGAAAGTAGTTGTACAAGGATCATGAGAACAACAGTAGTTAGGACTTTGCAGAGTAAAATTTGCTTCGATCGGCGATC
AACAACAGG
>chr3B_1
GCCTGAAACCATCACTGACAACCCCCG--CTTGACTTGGTGCAGGAGCCCGTGTATTCCCTGGGGGAACTCCAATCCATG
CTCGACGGGATGATGCAAGATTTCAGCTCCCCCCAACCGCCACCACCAAGCAGCTTCTTCACCAGCACCGGTTCGTCGAC
GCGGTTCAGCGCACCCAGCGGCGGAGCGCAGCAGCAGCGTCGACCCCCCTCCCGGGTACGGCCTCAGGGGTTCGGCAGCT
CGGCATGCTTCAGCCAGACGGCTTTCTCGGGCTGCTAAGCACCCGCGCGATCTGCACCGCAGTTCATGCGTCCGTGGGTG
TACGATCCTGGTTACAAGGATCACCGGCGTGAAGACACTGAATTGCAGAGACTGGGAGAGCCATTCACAGGAACCGTCGA
GCGCTGTAGCGATGCACACAGCAGGAGCCGGTACTGTACATCAACCCACTGGATGAGCGGAATAAAGAAGACGGTAGATA
TTTCCAGTTGACAGCAACTCGAAAGGATCTCCATTGTTAGTTTTTCTTGGATAGATTGTAGGTGTACATAGATGAGAATC
AGAAGTGAAGACGTGATGTTTTGCACTGTG--GTGTATTTACTTCAAAAGCAACCACGATGACACGTGTTGGAGTTGTCA
CAAACAAAAAATCAGTAAAGAGTACGTGTAACGTGTTTTTCATCTAGAAGCTGCTTGTCCCCCCACTTGTTATCTGGTTC
TGTCAAGTGTCAACCCGAATGATGCGTGAACGTAACCAACG---GTGGCAACTTACAACGAGGACCGAATAGATT---AT
TACCTTTT-CCGTGAAAAAGAAATTGCACTAATAGGTGGTTCGGTTGGGTGCCTAGCTTTGCAGAAACAGAGCGTGTATC
ACACATAAACCCTAGAAATTAGCAGCAGTTGCACCAGCATACCAATACCTGTTTAGGATATGCACCAGTAACCAAGACTT
GGTTATCCAGTTCATATATAAGGCGGTGTTGGATTCACGGCCTGCTAACTATAGTTGAGATCTGCCTGTTAGCAATC-GA
CACAAATGCTGCCCCTCCGGATGATGATAAGCCTGGTATCCATCTCTTTGCTTGTTGTGTCCCCTGCAATGGGCATACCA
ACGGACGACAAGTGCAAGTGCCTCATGTGCGTCTGCGACCTGGATCCGCACCCGCTGCCGCCGGCAATGCCGTCGCACCA
CCCAGCACCTCCTGAGCACGAATACAAATACCCTCCACCGTCGGAGCCGGAGCCAGAGCCAGAGCCACG-----------
-------------------------------GCCAGAGCCAA--------------------------------------
----------------------AGCCTGAGCCTGAGCCTGAGCCAAAGCCGGAGCCGGAGCCGGAGCCAACGG------C
ACAGTACTACCCGCCTCCTCCGGTGCCTGTGCCGACGCCAGTGTACTACTAC---CCACCGCCGTCGGAGCCGGAACCAA
CGCCCGTGTACTACCTTCCACCGCCGGCTGAGCCGTACGAGTACCCGTACGTGCAGCCAGCGCCGGTGTTTGGCATAGTG
GGGACGCCGGGGCAGATGTACCCGCGTGATAGCATGTTCAACCCGTCCAGCGCCCACCGGAAGCTCTGTCGTGGGATATC
CTCCGTAATTCTCGCCTCCTCGATCGTGGCAGCAGGGCTACTGTCACTGCTCATATAAATGTACCTAGAATACATTCAGT
CAACAGACTGAACCTGATCAGCAACCAATTGGCATGTAATGCTTCATTCCGCTGACGATGCTACTTCTGTTTTTC---TT
CCCCTTCATTTCAAATGTGTAACTCTGAAGGAAAAAATGCGAATGATGTTGAACTTTGAATTTGTTCGTGTGTGTAGTGC
AACTGCGCATATTTGTATGGTGAAAATAAATTCCAGTGAGTTCTCGTCTCTTTCTCGAGT--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------
>chr3D_3
--CTGAAGCTATCACTGACAACCCCCCCTCTTGACTTGGTGCAGGAGCCCGTGTATTCCCTGGGCGAACTCCAATCCATG
CTTGACGGGATGATGCAGGATTTCAGCTCCCCCCAACCGCCACCACCAAGCAGCTTCTTCAGCAGCACCAGTTCGTCGAC
GCGGTTCAGCGCACCCAGCGGCGGAGCGCAGCAGCAGCGTCGACCCCCCTCCCGCGTACGGCCTCAGGGGTTCGGCAGCT
CGGCATGCTTCAGCCAAACGGCTTTCTCCGGCTGCTAAGCACCCGCGCGATCT--------GTTCATGCGTCCGTGGGTG
TACGATCCTGGTTACAAGGATCACCGGCGTGAAGACACTGAATTGCAGAGACTGGGAGAGCTATTCACAGGGAACGTCGT
GCGCTCTAGCGATGCACACAGCAGGAGCCGGTAC-----ATCAACCCACTGGATGAGCGGAACAAAGAAGACGGTAGATA
TTTCTAGTTGACAGCAACTCGAAAGGATCTCCATTGTTAGTTTTTCTTAGATAGATCGTAGGTGTACATAGATGAGAATC
AGAAGTGAAGACGTGATGTTTTGCACTGTTTTCTAGTTGAC-------AGCAACCACGCTGACACGTGTTGGAGTTGGCA
CAAACAAAAAATCAGTAAAGAGTACGTGT-------TTTTCATCTAGAACCTGCTTGTCCACCCGCTTGTTATCTGGTTC
-------TGCCAAGCCGAATGATGCGTGAACGTAACCAACA-------------------------------GATTACAT
TACCTTTT-CCAT--AAAAAAAATGGCACTAATATGTGGTTCGGTTGGGTCCCTAGCTTTGCAGAAACAGAGCGTGTATC
ACACATAAACCCTAGAAATTAGCAGCAGTTGCACCAGCATACCAATACCAATTTAGGATATGCACCAGCAACTAAGGCTT
GGTAATCCAGTTCATATATAAGGCGATGTTGGATTCACGGCCTACTGAGACTAGTTGAGATCTGCCTGTTAGCAATCTGA
CACAAATGCTGCCCCTCCGGATGATGATAGCCTTGCTATCCATGTCTTTGGTTGTTGTGTCCCCTGCAATGGGCATACCA
ACGGACGACAAGTGCAAGTGCCTCATGTGCGTCTGCGACCTGGATCCGCACCCTCTGCCACCGGCAATGCCGTCGCACCA
CCCAGCCCCT------------------TACCCGCCACCGTCCGAGCCAGAGCCACGGCCAGAGCCAAAGCCAAAGCCTC
AGCCTGAGCCTGAGCCACAGCCGGAACCAGAGCCAGAGCCACGGCCAGAGCCAAAGCCCAAGCCTCAGCCTGAGCCTGAG
CCACAGCCGGAACCAGAGCCTGAGCCGGAGCCTGAGCCACAGCCGGAGCCG------AAGCCAGAGCCGAAGC------C
ACAGCACTGCCCGCCTCCGCCGGAGCCTGTGCCGACGCCAGTGTACTACTACTACCCACCGCCGTCGGAGCCGGAACCAA
CGCCCGTGTACTACCTTCCACCGCCGGCTGAGCCGTACGAGTACCCGTACGTGCAGCCGGCGCCGGTGTTTGGCATAGTG
GGGACGCCGGGGCAGATGTACCCGCGTGACAGCATGTTCAACCCGTCCACCGCCCACCGGAAGCTCTGTCGTGGAATATC
CTCCATATTCCTCGCCTCCTCGATCGTGGCAGCAGGGCTACTGACATTGCTCATATAA-TGTACCCAGAAAACATTCAGT
CCACAGACTGAACCTGATCAGCAACCAATTTGTATGTAATGCTTCATTCCGCTGACGATGCTACTCCTGTTCATTTTTTT
CCCCTTCATTTCAAATGTGTAACTCTGAAAGAAAAA-TGCGACTGATGTTGAACTTTGAATTTGTTCGTGCGTGTGGTGC
AAATGCGCATATTTGTATAGTGAAAATAAATTCCAGTGAGTTCTCCGTCTCTCTCAGCGAGCGCAAGAGAATGGCATGCA
GATTCACAGAAAGTAATAAATCGCAAGAGAAACTAAACTGCATTGTATAAATCTGTACCATGTTTGAAATTATACGATTA
TGTCACCGGATAACAAT---TACTTGCGCTGTCAGGTCATC-AAAATGCGCACGGAACAAACTGCACTGATCAGGAAGAG
TTCTCAGGTATACCAATATAATTAATAAAATGG------------CCGTATGCATCGTCCAGATGCAGAGAGGCCAGGGG
TCGTCCTCCTTTTCTAAAAAAAAATCGCACAAGTATTGTATCAAGAGCGAGGGCAAAGACCTTTCAAGAGCGAGGTCGAA
CATCCATCAGAACTGCAGCGTGATCAAGACTGCTGCTCCCAAGACCAAGGCCACAAGGAAGACCCGGCAGGCACACAAGG
CATCAGATCCCGACCGATCATCCGACATGGACGTCGTCGAGGTCGAATGCTCCTCCATCTTCGGAGTCGGGGACGCTGGT
TCTGGAACGGCAGCTGCAAGGGCATACACAGCAGTTTAACTAGTGCACACGAAGTACGACCGACGATTCAAGAAAGATAT
TCAGGACTTGCGGTGTTCAGTCGACCAAAATGGAATGCTCAGGTGAACAAAATAGAAG-----GTGCAGCTGCAACCTAA
AAGAGCAGTGCACGCAAAGCAGATAGTATCACAAAGACAGACTCGATCCTGCAATTAGTAGAAACAGAACAGAGGCTGCA
GAGAGTATCCGATGCAAAATTAGATGTTCTACTATCATTTCAACCTGTACAGTTGCGGCATAGAGCACGAAATGGATGGA
GCACCACAAGATAAAACAAGTTCAAGTTTCATTTGGGAGGAAAGAA----ATATGACATGTCTGCCCAAATGCCAATTGG
TTCATTCAACCGAAATCCGAAATAGCATTACTGGGCACAGATTTATGGAATCATTTTTTTTTTGACGAGCTATGGAATCA
TTAGACAAGCAGCAGAACATTTACCTGGAGAAAGTTTTGGTGCGGGAGGTGGCGATGGAGGTGTAAAATGCATCTCAGGC
AGTGACTTGAGCTCTGTTTCAATTGGCAAATGGCAAATGGAGTTAGCCAGTACTACTAATACTTGCCCCCTTAATTGAAT
TTAATGATTGACTTTTGTGAACTCTTTGAGAGAAACCACCAAGTAACGAAGCCCTTAGCTATTTATAAATATCGCCAATA
TTTTGTGAAATTACT---ACTATCAAACAGGCAACCCAGCAAACTGCTTAACTGAACGGTAATCATGACAAATCGCAGCA
AAAATGCAGAAGTAAGTCTGGGCC----------------------ACAAAAGAAAAATCCCGC----TTTCTCCCCCAT
-CCACTAGTTCAGAAATGCAAGTACTAATATCCCTAGTAGCATCCAGAGCTCGTCAGTAATCCGCATTACAACCAACCAT
TACGAAAGTAGTTGTACGAGGATAATGAGAACAACAGTAGTTAGGACTTTGCAGAGTAAAATTTGTTTCGGTCGGCGATC
AACAACAGG
>chr3B_1802
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------TGAGTTCT-CGTCTCTCTCAGCGAGCGCAAGGAAATGGCATGCA
GATTCACAGAAAGA---AAATCGCAAGAGAAACTAGACTGCATTGTATAAATCTATACCATGTTTGAAACGATACGAGTA
TGTCACCGGATAACAGT---TACTTGCGTTGTCAGGTCATCCAAAACGCGCACAGAACAAACTGCACTAGTCAGGAAGAG
TTCTCAGGTATCAC--------GCGCTGCATCACGTGGCACTTCACCGTATGCAACAAGAGGATCCAATCAAGAATGACG
CAGCAAT-------------------GCACAGGTATTGTAT-----------------------CAAGAGCGAGGTCGAA
CATCCATCAGAACTGCAGCGTGATCAAGACTGCTGCTCCCAAGACCAAGGCCACAAGGAAGACCCGGCAGGCACACAAGG
CATCGGATCCCGACCGATCATCCGGCACAGGCGTCGCTGAGGTCGAATGCTCCTCCATCT------TCGGGGACGCTGGT
TCTGGAACGGCAGCTGCAAGGGCATAGACAGCAGTTTAACTAGTGCACACGAAGTACGACCGACGATTCAAGAAAGATAT
TCAGGACTTGCGGTGTTCAGTCGACCAAAATGGAATGCTCAGGTGAACAAACTAGAATCAAACGTGCAACTGCAACCTAA
AAGTGCAGTGCATGCAAAGGAGATAGTATCACAAAGACAGACACGATACTGCAATTAGCAGGAACAGAACAGAGGCTGCA
GAGAGTATGCGATGCAAAACTAGGTGTTCTACTATCATT-GAACCTGTGCAATTGCGGCATAGAGCACAAAATGGACGGA
GCACGGCAAGATAAAACAAGTTCAAGTTTTATTTGGGATGAGGAGAGACCATATAACATG-CTGCCCAAATGCCAATTGG
TTTATTCAACCGAAACCCGAATAG-----ACTGGGCACAGATTTATCA---------------------------AATCA
TTAGACAAGAGGGAGAACGTTTACCTGGAGAAAGTTTTGGTGCGGGAGGTGGCGATGGAGGTGTAAAATGCATCTCAGGC
AGTGACTTGAGCTCTGTTTCAAT--------GGCAAATGGAGTTAGCCAGTACTACTAATACTTGCCCCCTTAATTG-AT
TTAATGATTGACTTTTGTGAACTCTTTGAGAGAAACCACCAAGTAACGAAGCCTTTAGCTATTTATAAATATCGCCAATA
TTTTGTGAAATTACT---ACTATCAAACAAGCAACCCAACAAACTGCTTAACTGAACGGTAATCATGACAAATCGCAGCA
AAAATGCAGAAGTAAGTCTGGGCC----------------------ACAAAAGAAAAATCCCGCGGTGTTTCTCCCCCAT
TCAACTAGTTCAGAAATGCAAGTACTAATATCCCTAGTAGCATCCAGAGCTCGTCAGTAATCCGCATTACAACCAACCAT
TACGAAAGTAGTTGTACAAGGATCATGAGAACAACAGTAGTTAGGGCTTTGCAGAGTAAGATTTGTTTCGATCGGCGATC
AACAACAGG
>SNPs
--------------S-------------------------------------S---------------------------
-------------------------S---------S-----S-----------------------------------S--
-------S-------------------------------------------S----------------------------
-------------------------------------------S------------S-----------------------
------------------------------------S----S--------------------------------------
-------------------S--S---------------------------------------------------------
----------------------------S---------------------------------------------------
------------S-----------------S----------------------S---------------S----------
S----------------------------------------------------------------------S--------
S---S------------------------------------SSS------------------------------S--S--
--------S----S-S---------S---------S--------------------------------------------
---------------------S-S-S------------------------------------------------------
---------S--------------------------------------------------------------------S-
-S----------------S---------S-S------S---------------------------S--------------
----------------------------------------------------------------------------S---
------S-------------------------------------------------------------------------
----------------------------------S---------------------------------------------
--------------------------------------------------------------S----------SSSSSS-
--------------------------------------------------------------------------------
---------------------------------------S----------------------------------------
--------------------------------------------------------------------------------
-------S------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------SSS------S-----------------S---
--------------------------S----------------------------------S------------------
--------------------------------------------------------------------------------
-----------------SSS------------------------------------------------------------
---S---------------S----S----------------S--------------------------------------
-----SSS------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----S---------------------------------------------S-----S-----------------------
--------------------------------------------------------------------------------
---------------------------------------------S----------------------------------
-----------------------S-------------------------------S--------S---------------
------------------------------------S----------SS-------------------------------
---------------------------------------------------------------S--S-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----S--------------------------------------------------------------------------
---------------SSS---------------------------------S-S--------------------------
----S-------------------SSSSSSSSSSSSSSSSSSSSSS----------------------------------
-------------S---------S-------------------S------------------------------------
-----------------------------------------------------------------S--------------
---------
>forward_641
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------ACACGTGTGGGAGTTGTCA
G-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------
>reverse_1982
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------TGCAAGAGAATGGCATGCA
G-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------
>forward_1069
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------TGCCCCTCCAGATGATGATG---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------
>reverse_2785
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------ACACGAAATGGATGGA
GCAC----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------
