>input_sequence_53939
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--------------------ATGGCGACGACGGCTGCGGCGTACGGCTGCTCGGCGGCGGCGGCG---CTGCCGTTCCCG
GGGAGCCCCTTCACCCGTAGCTCACCCCCGTCACGAGTTCACGTCGCCTCCTCCAATCCCATGCCCGGGACGCCCGCTCC
CAGGTACTAGCTTGCTTCTTGCCCTTGTCGGATTCAGCTCCCCCAACGACGCCTGAGCTAATAAGGTTGGTTGTGTGCTC
TCCTTGCAGGAGCCTGAGGGTTTCATGTCGTCGTAGGCGACTGTATGTGTGTGCCTGCTCCGGCGAGGTTGGTCCGGACA
ACGCCTCGGCAGCGTCACCGGCGGTGAGAACCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGATGAACTGGTTGT
CTGCGTGTTGCCTGCCTTTTGTGC--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------ACCGGTTCAGATCACTTGTTGAATGCGCTTATGCAATCCTATTCCAGTTCAAATACAAATGCTAAACGT
ATCATAGACGATGTACCTTTTGGGTTCTTTCAGTCTTGTACTTTTAGGCATTTTAATTATGCAGCCCCCACATAATACTC
ATGCAGCAATGTACTCTTCAAAACTTGGCACAAACCATAGCTTTTGAACTGGGTAGGCTGAAA-GCTTAATGATGTAGAT
ATTCAT---TATACCATACTCCTATATA--CTAAAATAGTAAATTGTACTGTATGAAATCACACTTTGAAATTGAATCGT
CATA-------------------------------------------CTGCGGATTAACCTGTTGTCTAGAATGGCTTTA
AAACAACATATGTTTCTTATCTGATATTGCAGGAAGCTAGTTTTGATATAAAGCTTCCTAGAAGAAGCTTGCTTGTGAAG
TTTACATGTACTAAATGTGATGCAAGGACAGAGCGTTTGATAAACAGGGTGGCCTATGAAAGAGGAACAGTTTTTCTTCA
GGTAAATTGTTCAGAGTATTTAT--TTA---ATTGCATTGTACATCCAGCAGCTTTGCTTATATTAGTACTGACCTTATC
TGCCTACCGCGCTCTCTTTTT--TAATATTAAACAAGTCCATGTCTATTCTCATTTATTTTCTGAGATATGCTGTTCATT
ACTTTCTAACATGCACTGCACACACAGTGCGCTGGGTGCCAGGTGTATCACAAGTTTGTTGACAATCTTGGCCTAATTGT
CGAGTATGACCTACGAGAAGAAAATGGGGTGAACACTTGTACTGAAGACTGA----------------------------
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--------------------------------------------
>chr1A_1_TraesCS1A01G063500
GAGAAGCCACATTTTGCTATATTCCATTATCATTATCACCAACATAGACCAACACATACAACCATCAACCGACAATACAA
CCGGGTGGTGCTCATGCGCAAACTGTTTGCATGCTAACT---AAGCAAAATGTGG---------CTGAAGAATTTTTGGA
AGATTTGAGATTACCTTAATAATTTGGCTACTGGAGAATGCTCGTTTTCTTCAAATCTCGAGTTCAGTAAGACTAGTGAG
TTGGATGCAAAATAAGCAGCTATGTAAACCTAGAGTGCAGGAGCTATGT-----AACAGGCTGTTTCAACAGTCACATTT
GCCATGGATACAACACTAAATAAATAGGTTGGGTGTTAAACAA---TATCATTATCATGGAACAATCATGCCATCAAAAC
TAGGATCTGATCTTCCTTGTAGTTTTGCCAGATAT------ACAGGAGGCTTGTTACATGATTATATGCATCATGGTCAT
GTATTAACATGTGG-T---------------AGCGAGCACATAATGCATCCCATCCGGAATGGCATTGGGG-GGAAGGGG
AAGCAGCGAGGTACCCACCTTGCAGCTTGCGCGCGAGCAGGGCAGGGAGAGCTCCT-------CCCGCCGTAGATGTGTC
GGAGGCGGTGCGCCCGCGGCCCCCGGGCGTGGCGGCGGCGGCG---GCCGGTTCCCGTTCGATGATGTGGGGCCGGGTTG
CCCCGTAGGCGGCCTTCGGCGGGAGTAGTTGGGGAAGGGAAGGG-AAGGGGTGCGCTTGGCCGTAGATCTGGAGCAGCGC
CGCCGCCGTCGGGAAGCAGTGC----GGAGATAGGCGGGAGTGGTGGCCTGGTGGGTGATTGTGGCTTGAAGGAGGAGGA
TGGCGGAAGCAAATTCACCAAAGACGAGGGACCTCTTTGCATACAAGCATTCCCCTCATTTGCGTGTAC--TACGGATCC
CAGCACTGCGATCTGTGCCATTCATCATCAATCCAACGGTCCAACTTCGCGTTTTCTATTTCTCCATCTTCAGTCCAATC
CAGTAGCCACCGGCCGGCCGATGGCGACGACGGCTGCGGCGTACGGCTGCTCGGCGGCGGCGGCG---CTGCCGTTCCCG
GGGAGCCCCTTCACCCGTAGCTCACCCCCGTCACGAGTTCACGTCGCCTCCTCCAATCCCATGCCCGGGACGCCCGCTCC
CAGGTACTAGCTTGCTTCTTGCCCTTGTCGGATTCAGCTCCCCCAACGACGCCTGAGCTAATAAGGTTGGTTGTGTGCTC
TCCTTGCAGGAGCCTGAGGGTTTCATGTCGTCGTAGGCGACTGTATGTGTGTGCCTGCTCCGGCGAGGTTGGTCCGGACA
ACGCCTCGGCAGCGTCACCGGCGGTGAGAACCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGATGAACTGGTTGT
CTGCGTGTTGCCTGCCTTTTGTGC--------------------------------------------------------
--------------------------------------------------------------------------------
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-----------ACCGGTTCAGATCACTTGTTGAATGCGCTTATGCAATCCTATTCCAGTTCAAATACAAATGCTAAACGT
ATCATAGACGATGTACCTTTTGGGTTCTTTCAGTCTTGTACTTTTAGGCATTTTAATTATGCAGCCCCCACATAATACTC
ATGCAGCAATGTACTCTTCAAAACTTGGCACAAACCATAGCTTTTGAACTGGGTAGGCTGAAA-GCTTAATGATGTAGAT
ATTCAT---TATACCATACTCCTATATA--CTAAAATAGTAAATTGTACTGTATGAAATCACACTTTGAAATTGAATCGT
CATA-------------------------------------------CTGCGGATTAACCTGTTGTCTAGAATGGCTTTA
AAACAACATATGTTTCTTATCTGATATTGCAGGAAGCTAGTTTTGATATAAAGCTTCCTAGAAGAAGCTTGCTTGTGAAG
TTTACATGTACTAAATGTGATGCAAGGACAGAGCGTTTGATAAACAGGGTGGCCTATGAAAGAGGAACAGTTTTTCTTCA
GGTAAATTGTTCAGAGTATTTAT--TTA---ATTGCATTGTACATCCAGCAGCTTTGCTTATATTAGTACTGACCTTATC
TGCCTACCGCGCTCTCTTTTT--TAATATTAAACAAGTCCATGTCTATTCTCATTTATTTTCTGAGATATGCTGTTCATT
ACTTTCTAACATGCACTGCACACACAGTGCGCTGGGTGCCAGGTGTATCACAAGTTTGTTGACAATCTTGGCCTAATTGT
CGAGTATGACCTACGAGAAGAAAATGGGGTGAACACTTGTACTGAAGACTGATTTGGAAT-GTGTCA-TAGAAGCCAGGC
ATGCTAAGTTTCCTTTAAATATACTAGGTTTGAGTTTTGACTACATTGACTATTTGAACCTTGTAGACTGCTTATATTGA
ACAGTATTTGTGCATTGAAATAGCAGCT--TACTCAGTTCATAACTTGGTTTGTATGCACTCAAATTGTATCACAATTCA
CGATACCAGATTACCTTATTGTTACCAAAATTGATATCG--TTATAGAAAAACGATACATTGTTGCTGGAAGTTCCTGGC
ACTAATTGTATGATATTCGCATTGTATACACATTA----------CTCCTATCTTGCTG---ATCTTGATTGTCTGGAAC
ATCACTTCTCTCTTGTTCTTCCTCTTTGGCCACCTGGTCCTCCTATCTTGCTGATCTTGATTGTCTGGAACATCACTTC-
------------TCTCTTGTTCTTCCTCTTTGGCCACCTGGTCCACATTTTCTGTTTTGCCAGCGCCATCTTTCTTTCCC
TGGAGGAACTGGATAAGTAAGACCTTCGAGTGTGATGTCTGTCTCTTCATTCCTCATGAGCACCTCTGCTATCTCTGCTG
GAGACCTCTTTGATCACTGATGTTTCCAAAAGCTCTTGGCTACCAGAATATGCTACTCCTGTTGAAATGCAGATGGAATT
ACATGATCAGATGGATTCATATGCAAGGGGAAGGGGAAAATGAATGCACAAGTAGACTACATACATACTTAAGGCAGGTC
TATACTTGTTAAAGTTTCATGGTCAGTGTAGGCGGCGCACACTCCGGCAGTGTTGCCACGGACCTATAATTTCCAGTTGA
TGAAAAGGAACCGAATCATTTACCAATTTCGATGGGCTTAACAAAGATAGTAAAACAGGGGGGCTCTTTCCAGCGAAGCA
AGTGTGCACCAGTCCTTTTTAGTACAGGAAATCATGGTAAGACTCTTTGCAGTTCATGTATAAACCCAAAACAATATAAT
GATCCATTCCTAAAACTCTTTGCAGTTCATGTGTAAACCCAAAA
>chr1D_1
GAGAAGCCACATTTTGCTGTATTCCATTATCATAATCACCAACATAGGCCAATACATACAACCATCAACCGCCAATACAA
CCGGGCGCTGCT--------AACCATTATCATGCTAACTTACAAGCAAAATGTGGCTTCATCTTCTGAATAA-TTTTGGA
AGACTTAAGGTTAGGTTAAT---CTGGCTACTGAAGAAGGCTCGTTTTCTTCAAATCTCGAATTGAGTAAGATTAGTGAG
TTCGATGCAAAATAAGCAGCTATGTAAACCTAGAGTGCAGCAGCTATGTAATGCAACAGGCTGTTTCAACAGTCAAAGTT
CCCATGGATACAATGCTAAA---------TGGGTGTTAAATAATACTATCATTATCATGAAACAATCATGTCATCAAAAC
TAGGATCA-----TCCTTGTAGTTTT-------------------------------------------ATCATGATCAT
GTATTAACATGTGGGT---------------AGCGAGCGCATAATGCATCCCACCGGGAATGGCATTGGGGAGGAAGGGA
AAGCAGCGAGGTACCCACCTTGCAGCTTGCGCGC-----GGGCAGGGCGAGGGCGGGCTCCTCCCCGGCGTAGATGTGCA
GGAGGCGGTGCGCCCGCGGCCCCCGGGCGT---GGCGGCGGCG---GCCGGTTCCCGCTCGATGATGTGGAGCCCGGTTG
CTCCGTAGGCGGCCTTCAGCGGGAGTAGCTGGGGAA------GG-AAGGGACGCGCTTGGCAGTAGATCTGGAGCGGCGC
CGCCGCCGTCGGGAAGCAGTGC----GGAGATAGGCGGGAGTGGTGG--------GTGATTGTGGCTGGAAGGAGGAGGA
CGGCGGAAGCAAATTCACCTAAGACGAGGGACTTCTTTGCATAGAAGCACTCCCTCCCTCCCTCATTTCTGTACAGATAC
CAGCACTGCAATCTGTGCCGTTCATCTTTAATCCCACGGTCCAGCTTCGCTTCTTCTATTTCTGCGTCCTCAATCCAATC
CAGTAGCCACCGGCCGGCCGATGGCGACGACGGCTGCGGCGTACGGCTGCTCGGCGGCGCCGGCG---CTTTCGCTCCCG
GGGAGCCCCTTCGCCCGTCGCTCGCCCCCGTCCCGCGTTCACCTCGCCTCCTCCAATCCCAAGCTCGGGAAGCCCGTTCC
CAGGT--GCTT---CTTCTTGCCCCAGTCGGATTCAGCTCCCCCAGCGATTGC-GAGCTAATAAGGTTGGTTGTGTGCTC
TC-TTGCAGCAGCCTGAGGGCTTCATATCGTCGTAGGCGACCGTATGTCTGCGCGTGCTCCGGCGAGGTTGGTCCAG---
ACGCCTCGGCGGCGTCACCGGCGGTGAGAACGCCGCCCCCCCTCCCTCGGCTATGGATGAACGGAACTG-----------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------GT
TTGCGTGTTGCCTGCCTTTTGTGCTCGC--------GGTGTTTAGGTTAATGAAAATTGGGCTAGCTAATTACGGCAAGC
GATTCTGCAAATGTTTGTGCATTTGGCAGCAATATGAACTATACTTAGCTGCTTCAAATATCTACTTTGGGAAGGAGGGA
GTAGTTAACTGATTACTAGGACTC-TTTTTTTAATCTGGAATAAAAATTACCAATGTATTGCTTAATAACACAGAGAAG-
--------------------------------------------------------------------------------
-------------------------------------------------CTTGTGAGGTTATTAGAATGAGGTGTGGTTT
GCCTTTTATGCACCGGTTCAGATCACCTGTTGAATACGCTTGTGCAATCCTAGTCCAGTTCAAATACAAATGCTAAACAT
ATCGTAGATGATGTACCTTTTGCGTTCTTTCAGTCTTGTACTTTTAGGCATCTTCATTATGCAGCCCCCACACAATACTC
ATGCAGCAATGTGCCCTTCAAAACT---CACAAACCATAGCTTTTGAACTGGGTAGGCTGAAAAGCTTAATGATGTAGAT
ATTTATCCTTATATCATACTCCTATATATACTAACATAGGAAATTGTATTGTATGAAATCACACTTTGAAATTGAATCAT
CATA-------------------------------------------CTGTGGATTAACCTGTTGTCTAGAATGGCTTTA
AAACAACATGTGTTTCTTATGTGATATTGCAGGAAGCTAGTTTTGATATAAAGCTTCCTAGAAGAAGCTTGCTTGTTCAG
TTTACATGTACTAAATGTGATGCAAGGACAGAGCGTTTGATAAACAGGGTGGCCTATGAAAGAGGAACCGTTTTTCTTCA
GGTAAATTGTTCAGCGTGTTTAT--TTACTTATTACATTGTACATCCAGCAGCTTTGCTTATATTAGTACTGACCTTATC
TGCCTACCGCGCTCTCTTTTTTTTAATATTAAACAAGTCCATGTCTATTCTCATTTATTTTCTGAGATATGCTGTTCATT
ACTTTCTAACATGCACTGCACACACAGTGCGCTGGGTGCCAGGTGTATCACAAGTTTGTTGACAATCTTGGCCTAATTGT
CGAGTATGACCTACGAGAAGAAAATGGGGTGAACACTTGTACTGAAGACTGATTTGGAAT-GTGC-----GAAGCCAGGC
ATGCTAGGTTTCCTCTA----------------GTTTTGACAACATTGATTATTGGAACCTTGTAGACTGCTTATATTGA
ACGATATTTGTGCATTGAAATAA---CT--TACTCAGTTCATAACTGAGCTTACATGCACTCAA-TAGTATCACAGTGCA
CAGTACCAGATTATCTTATTGTTATCAAAATTGATCTCTTATTATAGCAAAATGATACATAGTTGCTGGAAGTTCCTGGC
ACTAACTGTATGATATTCACACTATATACACATCA---TTCTTTGCTCCCATCTTGCTGGTTATCTTGATTGTCTGGGAC
ATCATTT---------------------------------------------------------------------TTTG
TCATCATCTCTATCTCTTGTTCTTCCTCCTTGGCCACCTGGTCCACATTTTCTGTTTTGCCAGCACCATCTTTCTTTCTC
TTGAGGAACTGGATAAGTAAGACCTTCAAGTGCGATGTCTGTCACTTCGTTCCTCATGAGCACCTCTGCTACCTCTGCTG
GAGACTGCTTATATTTCAATGCACAAATACTTGTAGACTGATTATTTGAACCTTGTAGACTGCTTATATTGAACATTATT
TGTGCATTCAAATAGCTTACTCAGTTCATAACTGAGTTTATATGCACTCAAATGGTATCACAGTTCACAATAGCAGATTA
TCTTATTGTTACCAAAATTGATCTCATATTATAGTAAAATGATATATTGTTGCTGGAAGTTCTTCGATTTAGTTGTATGA
TATTCACACTGTATACACAT------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
>chr1B_2
-AGAAGCGATATTTTGCTATATTCCATTATCATTATCACCAACAAAGGCCAATACATACAACCATCAACCA-CAATGCAA
CCGGGCGCTGGTCATGCGCAAACCGTTTGCATGCTAACTTAGAAGCAAAACGTGGCTTCATCTTCTGAAGAATTTTTGGA
AGACTTAAGATTAGCTTAAT---TTGGCTACTGAAGC---------TTCTTCGAATCTCGAATTCAGTAAGATTAGTGAG
TTAGATGCAAAATAAGCAGCTATGTAA-----------------------------CAGACTGTTTCAACAGTCACAGTT
CCCATGGATACAGTGCTAAA---------TGGGTGTTAAATGA---TATCATTGTCATGGAACAATCATGCCGTCAAAAC
TAGGGTCTGATCTTCCTTGTAGTTTTACCAGATAATACTACACAGGAAGCTTGTTATATTATTGTACGCAT---------
----TAACATGTGG-TTATTAGTTATGTGGAAGCGAGCACATAATGCATCCCATCCGGGATGGCATTGGGG-GGAACGGG
AAGCAGCGAGGTACACACCTTGCAGCTTGCGCAC-----GGGGAGGGCGAGGGCGGGCTCCTCCCCGCCGTAGATGTGCC
GGAGGCGGTGCGCCCGCGGCCCCCGGGCGT---GGCGGCGGCGGCGGCCGGTTCCCGCTCGATGATGCGGAGCCGGGTTG
CCCCGTAGGCGGTCTTCGGCGGGAGTAGCTGGGGAA------GGGAAGGGGCGCGCTTGGCAGTAGATCTGGAGCAGCGC
CGCCGCCGCCGGGGAGCACTACGGAGGGAGATAGGCGAGAGAGGTGG--------GTGATTGTGGCTTGAAGGAGGAGGA
CGGCGGAAGCAAATTCACCAAAGACGAGGGACCTCTTTGCACAGAAGCAGTCATTTCATTTGTGTGTGC--TACGGATCC
CAGCACTGCAATCTGTGCCATTCATCTTCAATCCAACGGTTCAGCTTCGCTTCTTCTGTTTCTGCGTCCTCAATCCAATC
CAGTAGCCACCGGCCGGCCGATGGCGGCGACGGCTGCGGCGTACAGCTGCTCGGCGGCGGCGGCGGCGCTGCCGTTCCCG
GGGAGCCCCTTCGCCCGTCGCTCGCCCCCGTCCCGCGTTCACCTCGCCTCCTCCAATCCCAAGCTCGGGAAGCCCGTTCC
CAGGTACGCTT---CTTCTTGCCCCTGTCAGATTCAGCTCCCCCAGCGACGCCTAAGCGAATAAGGTTGGCTGTGTGCTC
TCCTTGCAG---CCTGAGAGCTTCATATCGTCGAAGGCGACCGCATGTCCGCGCGTGCTCCAGCGAGGTTGATCCGG---
ACGCCTCGGCAGCGTCACCGGCAGTGAGAACCCCCTCTTC---CCCCCGGCTATGGATGAACAGAAT-------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------TTGT
TTGCGTGTTGCCTGCCTTTTGTGCTAGACTGCTAGTGGTAGTTAGGTTAATGAAAATTGGACTAGTTAACTATGGCAAGC
GATTCTGCAAATGTTTGTGGATTTGGCAGCAATATGAACTATACTTAGCTGCTTCAAATATCTACTCGGGGAGGGAGGGA
GTAGTTAACTGATTACTAGGACATTTTTTTTTAATCTGGAATAAAAATTACCAACATATTGCTCAATAACACAGAGAAGA
TATATAGCATCATCCATGTGTCAACTGTCAACTCACTGGTAACAAGAGGCAGCAGTGTTTAATACCTTGCAACCACAACT
CTGAATGACACACGATAAGTTCAAGATCGCCGTTGTTATCAACCTTAAGCTTGTGAGATTATTAGAATGAGGTGTGGTTT
GCCTTTTATGCACCGGTTCAGATCACTTGTTGAATGCGCTTGTGCAATCCTAGTCCAGTTCAAATACAAATGCTAAACAT
ATTATAGATGATATACCTTTTGCGTTCTTTCAGTCTTGTACTTTTAGGCATTTTAATTATGCCGCCCCCGCATAATACTC
ATGCAGCAATGTGCCCTTCAAAACTTGGCACAAACCATAGTTATTG-ACTGGGTAGGCTGAAA-GCTTAATGATGTAGAT
ATTCATCCTTATATCATACTCCTATATATACTAACATAGGAAATTTTACTGTATGAAATCACACTTTGAAATTGAATCAT
CATA-------------------------------------------C--------------------------------
-----------ATTTCTTATGTGATATTGCAGGAAGCTAGTTTTGATATAAAGCTTCCTAGAAGAAGCTTGCTTGTTCAG
TTTACATGTACTAAATGTGATGCAAGGACAGAGCGTTTGATAAACAGGGTGGCCTATGAAAGAGGAACCGTGTTTCTTCA
GGTAAATTGTTGAGAGTATTTAT--TTA---ATTGCATTGTACATCCAGCAGCTTTGCTTATATTAGTACTGACCTTACC
TGCCTACCGCACTCTTTTTTTAAAAGTATTAAACAAGTCCATGTCTATTCTCATTTATTTTCTGAGATATGCTGTTCATT
ACTTTCTAACATGCACTGCACACACAGTGCGCTGGGTGCCAGGTGTATCACAAGTTTGTTGACAATCTTGGCCTAATTGT
CGAGTATGACCTACGAGAAGAAAATGGGGTGAACACTTGTGCTGAAGACTGATTTGGAAT-GTGTCA-TAGAAGCCAGGC
ATGCTAAGTTTCCTCTAAATATACTAGGTTTGAGTCTTGACAACATTGACTATTTGAACCTTGTAGACTGCTTATATTGA
ACAGTATTTGTGCATTGAAATAGCAGCT--TACTCAGTTCATAACTGGGTTTATATGGACTCAAATAGTATCACAATTCA
CAATACCAGATTACCTTATTGTTACCAAAAATTG-CTCTCATTATAGAAAAACGATACATTGTTGCTGGAAGTTGCTGGC
ACTAATTGTATGATATTCGCACTGTATGCACATCATCATTCTTTGCTCCCATCTTGTTG---ATCTTGATTGTCTGGAAC
ATCACTT---------------------------------------------------------------------TTT-
------------TCTCTTTTTCTTCCTCTTTGGCCACCTGCTCCACATTTTCTGTTTTGCCAGCGCCATCTTTCTTTCCC
TGGAGGAACTGGATAAGTAAGATCTTCGAGTGTGATGT--------------CTCATGAGCACCTCTGCTACCTCTGCTG
GCGACCTCCTTGATCATTGATGTTTCCAAAAGCTCTTGGCTACCAGAATATGCTACTCCCGTTGAAATGCAGATGGAATT
ACATAATCTCATGGATTAATATGCAAGGGCAAGGGGAAAATGAATGCACAAGTAGACTACATACATACCTAAGGCAGGTC
TATACTTGTTAAAGTTTCTTGGTCAGTGTAGGCGGCGCACACTCTGGCGGTGTTGCCATGGACCTATAATTTCCAGTTGA
TGAGAAGGAACCGAATCATTTACCAATTTCCATGGGCTGAACAAAGATAGTAAAACAGGGGGCCTCTTTCCAGCGAAGCA
AGTGTGCACCAGTCCTTTTTAGTACAGAAAATCATGGTAAAACTCTTTGCAGTTCATGTGTAAACCCAAAACAATGTAAT
GATACATTCATAAAACTCTTTGCAGTTCATGTATAAA-------
>chr3A_1851
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------------------------------------------------------------------TGAAATTGAAGCAT
CATACTGCGGATTAACCGGTTGACTAGAATAGCTTTAAAACAACCTAC--------------------------------
-----------GTTTCTTATGTGATATCGCAGGAAGCTAGTTTTGATATAAAGCTGCCTAGAAGAAGCTTGCTTGTTCAG
TTTACATGTAATAAATGTGACGCAAGGACAAAACGTTTGATAAACAGGGTGGCCTATGAAAGAGGAACAGTTTTTCTTCA
GGTAAATTGTTCAGTGTGTTTATATTTACTTAAT---TTGTACAGCCAGCAGCTTTGCTTATATTAGTACGGACCTTATC
TGCCTACCACTCTCTTTTTTAATATTA---AAACAAGACCATGTCTATGCTCATTTATTTTCTGAGATATGCTGCTCATT
ATTTTCTAACATGCACTGCACACACAGTGCGCAGGGTGCCAAGTGTATCACAAGTTTGTTGACAATCTTGGTCTAATTGT
CGAGTATGACCTACGAGAAGAAAATGGGGTGAACACTTGTACTGAAGACTGATTTGGAAT-GTGTTATTAGAAGCCAGAC
ATGCTAAGTTTCCTTTAAAATCATTAGGTTTGAGTCTTGACAAAATTGATTATTTGAATCTTGTAGACTGCTTATATTGA
ACAGTATTTCTGCATTGAAATAGCTACCAATACTCATTTCATAACTGGGTTAATATGCATTCAAATGGTATAACTGTTCA
CAATACCAGATTATCTTATTGTTACCAAAATTGATCTCTTATTATAGCAAAATGATACATTGTTGCCCGAAGTTCCTGGC
ACTAATTGTACGATATTCGCACTGTATACACATCA---TTCTTTGCTCCCATCTTGCTG---ATCTTGATTGTCTGGAAC
ATCACTT---------------------------------------------------------------------TTTG
TCATCATCTCTTTCTCTTGTTCTTCCTCCTTTGCTACCTGGTCCACATTTTCCTGTTTGCCAGCGCCATCTTTCTTTCTC
TTGAGGAACTGGATA----AGACCTTCAAGTGCGACGTCCGTCTCTTCATTCCTCATGAGCACCTCTGCGACCTCTGCTG
GAG-----------------------------------------------------------------------------
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--------------------------------------------
>chr3D_1851
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------------------------------------------------------------------TGAAATTGAAGCAT
CATACCGCGGATTAACCGGTTGGCTGGAATGGCTTTAAAACAACATAC--------------------------------
-----------ATTTCTTATGTGATATTGCAGGAAGCTAGTTTTGATATAAAGCTTCCTAGAAGAAGCTTGCTTGTTCAG
TTTACATGTAATAAATGTGATGCAAGGACAAAACGTTTGATAAACAGGGTGGGCTATGAAAGAGGAACAGTTTTTCTTCA
GGTAAATTGTTCAGTGTGTTTAT--TTACTTAAT---TTGTACAGCCAACAGCTTTGCTTATATTAGTACGGACCTTATC
TGCCTACCGCTCTCTTTTTTAGTATTA---AAACAAGACCATGTCTATGCTCATTTATTTTCGGAGATATGCTGTTCATT
ATTTTCTAACATGCACTGCACACACAGTGTGCAGGGTGCCAGGTGTATCACAAGTTTGTTGACAATCTTGGTCTAATTGT
CGAGTATGACCTACGAGAAGAAAATGGTGTGAACACTTGTACTGAAGACTGATTTGGAGAAGTGTTATTAGAAGCCAGAC
ATGCTAAGTTTCCTCTAAAAACATTAGGTTTGAGTCTTGACAAAATTGATTATTTCAACCTTGTTGACTGCTTATATTGA
ACAGTATTTCTGCATTGAAATAACTACCAATACTGAGTTCATAACTGGGTTTATATGCACTCAAATAGTATAACTGTTCA
CAATACCAGATTATTTTATTGTTACCAAAATTGATCTCTTATTATAGCAAAATGATACATTGTTGCTCGAAGTTCCTGGC
ACTAATTGTATGATATTCACACTGTATACACATCA---TTCTTTGCTCCCATCTTGCTG---ATCTTCATTATCTGGGAC
ATCACTT---------------------------------------------------------------------TTCG
TCATCATCTCCTTCTCTTGTTCTTCCTCCTTCGCCACCTGGTCCACATTTTCCGGTTTGCCAGCGCCATCTTTCTTTCTC
TTGAGGAACTGGATA----AGACCTTTGAGTGCGACGTCCGTCTCTTCATTCCTCATGAGCACCTCTGCGACCTCTGCTG
GAG-----------------------------------------------------------------------------
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--------------------------------------------
>chr3B_1851
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------------------------------------------------------------------TGAAATTGAAGCAT
CATACTGCGGATTAACCGGTTGACTAGAATAGCTTTAAAACAACATAC--------------------------------
-----------GTTTCTTATGTCATATTGCAGGAAGCTAGTTTTGATATAAAGCTGCCTAGAAGAAGCTTGCTTGTTCAG
TTTACATGTAATAAATGTGATGCAAGGACAAAACGTTTGATAAACAGGGTGGCCTATGAAAGAGGAACAGTTTTTCTTCA
GGTAAATTGTTCAGTGTGTTTATATTTACTTAAT---TTGTACAGCCAGCAGCTTTGCTTATATTAGTACGGACCTTATC
TGCCTACCACTCTCTTTTTTTATATTA---AAACAAGACCATGTCTGTGCTCATTTATTTTGTGAGATATACTGCTTATT
ATTTTCTAACATGCACTGCACACACAGTGCGCAGGGTGCCAGGTGTATCACAAGTTTGTTGACAATCTTGGTCTAATTGT
CGAGTATGACCTACGAGAAGAAAATGGGGTGAACACTTGTACTGAAGACTGATTTGGAAT-GTGTTATTAGAAGCCAGAC
ATGCTAAGTTTCCTCTAAAAACATTAGGTTTGAGTCTTGACA-----GATTATTTGAACCTTGTAGACTGCTTATATTGA
ACAGTATTTCTGCATTGAAATAGCTACCAATACTCATTTCATAACTGGGTTTATATGCACTCAAATAGTATAACTGTGCA
CAATACCAGATTATCTTATTGTTACCAAAATTGATCTCTTATTATAGCAAAATGATACATTGTTGCTCGAAGTTTCTGGC
ACTAATTGTATGATATTCGCACTAAATACACATCA---TTCTTTGCTCCCATCTTGCTG---ATCTTGATTGTCTGGAAC
ATCACTT---------------------------------------------------------------------TGTG
CCATCATCTCTTTCTCTTGTTCTTCCTCCTTCGCTACCTGGTCCACATTTTCCGGTTTGCCAGCACCATCTTTCTTTCTC
TTGAGGAACTGGATA----AGACCTTTGAGTGCGACGTCCGTCTCTTCATTCCTCATGAGCACCTCTGCGACCTCTGCTG
GAG-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------
>SNPs
-----------------------------------------------S----S------------------S--------
-----S-S---------------S--------------------------------------------------------
---S--S------S------SSS----------S----S----------------------S----------S-------
--S-------------------------------------S------------------------------------S--
S------------SS-----SSSSSSSSS-----------S---------------------------------------
--------------------------S-------S------------S--------S--S---S--S--------S----
--------------------------------------------------------------------------------
----------------------------------SSSSS--------S---SS-SS----------------------S-
------------------------------SSS------------------------S------------S---------
----------------------------S-------SSSSSS---------S---------S------------------
-----------------------------------------------SSSSSSSS-------------------------
S------------------------------------------S-----S----S-------S----S------------
---------S----------------S----------------S------S-S----------S-S--S---S-------
--------------------------------------------------------------------------------
------------S-----S----S--------S--S------S------------------S--S-----S-----S---
-------SSSSSSS----------S--------------------S----------------------------------
---------S----------S-----S--------------S------S--S--S----------------------SSS
-----------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----
S-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------S----------S-------------------------S-
--------S-------------S---------------------------------------------------------
------------S-S-----------------------------------------------------------------
-------------S--------------------S----S--------------------------------------S-
--------------------------------------------------S-----------------------------
---------S----------S-------------------------------------------------------SS--
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------S--------------------------------------
----------------------------------------------S-----S-------------S-------------
-S---------------------------------S--S-----------------------------------------
---------------------S-----------S---------------S------------------------------
-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----
--------------------------------------------------------------------------------
-----------------------------------------------------------------------S--------
-----------------------------------------------------------S--------------------
----S---SS-------S-----------S--------------------------------------S-----------
------------------S-------------------------S---S---------S---------------------
---S--------------------------S-------S-----------------------S-----------------
---------------------------S------------S------------------S---------------S----
---S-----S----------------------S----SSSSSSS
>forward_711
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------TTCCCGTTCGATGATGTGGG---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
>reverse_1589
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------TGAACTGGTTGT
CTGCGTGT------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
>forward_1214
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------CGCTCC
CAGGTACTAGCTTG------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
>reverse_3229
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------GCCACCTGGTCCTCCTATCT--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
