>input_sequence_53913
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----------------------------------------ATGGAAGCCGTAAGTGTGGCTCCAAGGGTTCTGTCATTTC
CCGTATTGAATGAAATTACAAAAGGTTTCTCTAATGACATGAAAGTTGGCGCTGGTTCGTATGGAAATGTTTATAAGGTA
TATGCGGTTGAAGAACATGCATGATTTTGAGCTATACTATTTCATATGGTTACTTGGTTAGACAACGCACATGCTGACAC
ATTTATGTGTTGACACGCACACCAAACATTGTATTAAGTGGCTATTCACTGCGCTGCTTTATCAATATTATTTTCTCTAT
TATTAAGAGGGTTTTACAACCTCATGCTTATAATCAGGTGTGTGCCAAAGAATCAAAACATCAGACAAATTGTGGCGAGT
CTATAGTAACAACACTCAAAATCAAAGGGCACTAATAATTTTACATTCACTAATTATCAGACCCTGCTACTGTGTTACGC
CTACACTTTGCCTAGAGGAGAAGAGAAGAAGCTCAAATCTACTAACATCATTCATAGGACAAGAAAACTTTCTTTTTTAA
GGGGTGATTTTGCAAGGTGTTCTTCCAGGGTAACTATTCTAGTTCACATGTACAGTAGCAAATACTAACTGGGTCCCTAT
TGATCTTGTTAATGCATACTTCATGTTATACTGCCACGCTATTTTCTGACAAACAATAATATAGAGCATGCTGTATAGGT
AACAAAACGTGAGTATGCACAAATTTTCTGCTCAAACATG-TACATATGTCGCCGCCAAC-AGAACTTTGAACCATGCAT
GCATTGATATATTGAATAGGGACAGCATGCAGATGGGAAAATGATTGCTGTGAAGGTGCTTCATTA---TATTCCAGGAC
TTGATGATGAGCAATTTCAGAAGGAGTATCGTAATCTCGCGAATCTTCAACACGAAAATATTGTGCGATTAATTGGCTAT
TGCCATGAAACTTTTGGAGAATTCATAGATTATAAGGGGGAAAAGATTTTAGCTCAGACGATAAAGAGGGCGCTTTGCTT
CGAGTATATGCAAAATGGAAGCCTTGATAGCTATATATCTGGTACGATGCACAATGCTCTACTTGTACTATGACA-----
-----------TAGTATACTACGTTAAGATCATTCAT------AAATTATTTCAAGGCCGGATGCCCTTTTGTTTGTTGC
TGCAGATGAATCTAGTGGACATGATTGGAGTACACGCTATGCAATTATTAAGGGGATTTGTCAGGGTTTGAAATACCTTC
ACGAGGAATTGGTTCCTCCTATGTGGCATTTGGATTTAAAACCAGGCAATATATTGCTAGATGAGAATATGGTGCCAAAG
ATCGCGGACTTTGGCTTGTCAAGGCTCTTCGGAGGAGAACAAACACATATATGA--------------------------
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>chr3B_1_TraesCS3B01G001000
TTGCTGCTGGGCGGCCGCTCGATATTGGTGCCATTCGTACTAATCGCATCGTGGCGGACAGCGTAGATTTGAAGTTGGCT
GTTGATAGCTTGTACCAGACACCAGTAAGAATTATATATAATAAACATGGAAAGAAGCAAGACTTCACTGCATATATACT
ACGCGAAACTACTATACGGACGACGTTTCCTTGGACGATTTGTGGACGACAGTAAATCAGCGGCTGGGCTGCAATTTCTT
CTATGCATGGACGGTTCTAACCATAGCGTCGTGCAAGCATCGGCTTGATTTTGTCGTGTGCATAGCAGCTACATACAGAT
CTGAGCTGGTTCCAGTCATGTCTTGACTCTTCACTGAGCTGACCGCTGCCTGCCCGGATCCATCCATTTGCTAGCAGGTA
TCGATCTCTTGATTCTCTGCTACCATTTTCTTCAAAGTGCTTTTCAAGACTTCCGCTTTAAGAGAATTCATCCTTGGCGC
AGTAGTCTTAAATTTGCTCCATATTCTTTACAAGTAGTATACTATCTTCAGTTCTAATGTTATGTTGGTCTCCTATATCA
GTTCCGTTGGTGCTGGATCTGTAGACCAAGTCTCTCTGAACCAGGTACTCCCTTCCTTATTTCCGCTCTTGATAATACAG
TTGCTATTGATTCCCACCCCCCTCCGAATAGAACCTTGCCAGCTACTCCCTCCATTTCTAAATATAAGTCTTTTTAGAGA
TTCTACCATGGACTACATATGGAGCAAAATGAGTGATTCTACACTCTAAACTATGTCTATATACATCCGTATGTAGTTCA
TATTGAAATATCTACAAAGACTTATATTTAGGAACAGAGGGAGTAGATTATTGGTCTATTGAAAGAGGCCACTACTTTCC
CTTTTCTTTAAAGGAGCGAGGCCGTAAATCTCAATTGCTCATTCTGCCTGTAAAATAGACACATATTCCATTTCAATGAA
CTGCTTTCTGTTCGGTTTTTCTATCAGGGAAAACAATAAGATGGAAGCCGTAAGTGTGGCTCCAAGGGTTCTGTCATTTC
CCGTATTGAATGAAATTACAAAAGGTTTCTCTAATGACATGAAAGTTGGCGCTGGTTCGTATGGAAATGTTTATAAGGTA
TATGCGGTTGAAGAACATGCATGATTTTGAGCTATACTATTTCATATGGTTACTTGGTTAGACAACGCACATGCTGACAC
ATTTATGTGTTGACACGCACACCAAACATTGTATTAAGTGGCTATTCACTGCGCTGCTTTATCAATATTATTTTCTCTAT
TATTAAGAGGGTTTTACAACCTCATGCTTATAATCAGGTGTGTGCCAAAGAATCAAAACATCAGACAAATTGTGGCGAGT
CTATAGTAACAACACTCAAAATCAAAGGGCACTAATAATTTTACATTCACTAATTATCAGACCCTGCTACTGTGTTACGC
CTACACTTTGCCTAGAGGAGAAGAGAAGAAGCTCAAATCTACTAACATCATTCATAGGACAAGAAAACTTTCTTTTTTAA
GGGGTGATTTTGCAAGGTGTTCTTCCAGGGTAACTATTCTAGTTCACATGTACAGTAGCAAATACTAACTGGGTCCCTAT
TGATCTTGTTAATGCATACTTCATGTTATACTGCCACGCTATTTTCTGACAAACAATAATATAGAGCATGCTGTATAGGT
AACAAAACGTGAGTATGCACAAATTTTCTGCTCAAACATG-TACATATGTCGCCGCCAAC-AGAACTTTGAACCATGCAT
GCATTGATATATTGAATAGGGACAGCATGCAGATGGGAAAATGATTGCTGTGAAGGTGCTTCATTA---TATTCCAGGAC
TTGATGATGAGCAATTTCAGAAGGAGTATCGTAATCTCGCGAATCTTCAACACGAAAATATTGTGCGATTAATTGGCTAT
TGCCATGAAACTTTTGGAGAATTCATAGATTATAAGGGGGAAAAGATTTTAGCTCAGACGATAAAGAGGGCGCTTTGCTT
CGAGTATATGCAAAATGGAAGCCTTGATAGCTATATATCTGGTACGATGCACAATGCTCTACTTGTACTATGACA-----
-----------TAGTATACTACGTTAAGATCATTCAT------AAATTATTTCAAGGCCGGATGCCCTTTTGTTTGTTGC
TGCAGATGAATCTAGTGGACATGATTGGAGTACACGCTATGCAATTATTAAGGGGATTTGTCAGGGTTTGAAATACCTTC
ACGAGGAATTGGTTCCTCCTATGTGGCATTTGGATTTAAAACCAGGCAATATATTGCTAGATGAGAATATGGTGCCAAAG
ATCGCGGACTTTGGCTTGTCAAGGCTCTTCGGAGGAGAACAAACACATATATGACAAAAAGTGCTATAAGAACACAGTAA
GCCTAATCATCTGTGTGAACTGAGAAGCTACCCAAGGACATGAATAATACTCCCTCCGTTCCTAAATATAAATTGAACTT
CTAAAACATCTTATATTTAGGAATGGAGGGAGTATATGTATATATTTGCATTAGACCCATGGTATCAGTAACATATATGA
TG--------TGTCATGCAGTGGGTACGTACCGCCAGAATATATAGATGCGGCTTTGATCACTGTCAAGTTTGATATATT
CAGTTTGGGTGTGATGATCGTAAAGATAATCACAGGACCTAAGGGCTACTTTAGAAGTGCTGAAATGTCTCCACAACAAT
TCACAGAACTTGTAAGAGAGATTGTTGTCTTCACTAAGATGAAGTGCATCATTCGTGAATGATATACCTCCATACTCCTT
CTGTGCAAAAATAACTGTCTCAAGCTTAGTACAACTTTGTACTAAAGTTAGTANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACGAAAGAAACGTATGCCCACCTCGTATTG
TACAGCTCTGCCGGGCATACGTATACCGCGCGCATGAAAAAAAAAGTACCCATGATCTGGGCCCGCCCCCATCTTCTCGC
CCGCCCATCTAGTCGCCCGCCCGCTAATCAAGGTATTTCCAGAGTTGGCGATCGCCGCCGCAGCAGATCGCCGCCGTCCG
AACCCCGTGCGAGGCCACCCTCGCCGTCCCAACGTCGCCCGTCGCCGCCCTCGGCGTCTGGACGTCGCCCGCCGCCGCCC
CCGTCGCCGCATCTCACCGTCC
>chr2B_1676
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---------------------------------------------------------------------------TAGAT
AAATAAACATGAGTATGCACAAATTT-CAGCTTAAACATGTTGCATATATATCTGCACAT-AGAACTTTAAACCATGCAT
GCATTTCTATGTTGAATAGGGACAGCATACAGATGGGGAATGGATTGCTGTGAAGCTGCTTCATAATTACATTCCAGGAC
TTGAAGATGAGCAATTTGAGAAGGAGTATCACAATCTCGCAAATCTGCAACACAACAATATTGTGCGGTTAGTTGGCTAT
AGTCATGAAACTCGGCGAGAATTCCTACCTTATAATGGTGACCTGGTCTTGGCTGACATTACACAGAGAGCACTTTGCTT
TGAATATATGCAAAATGGAAGCCTTGACAAATTTCTTACTGGTATGATACACGGGGTTCTACTTGTATCATAAGA-----
-----------TA----------CCACTTTAATCAATCGTTCATAGCATATAGTTTTTGAGGGTGCGCGTTGTTTGTTGG
TACAGATGAATCTAAGGGACATGATTGGCGCACACGCTATGCAATAATTAAAGGAATTTGTCAGGGTTTGAAATATCTTC
ATGAGGAATTGCAAACTCCAATGTATCATTTGGATTTAAAACCAGCCAATGTACTGCTAGATGAAAATATGGTGCCCAAA
ATCGCGGATTTTGGCTTGTCAAGGCTCTTCGGAGGAGAACAGTCAAAA--TTCACAAAAAGTGACATAGGAACACGGTAA
GCCTACTCATCCATGTGAA-------------------------------------------------------------
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>chr2B_1694
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-------------TATGCACAAATTTTCTGCTTAAGTATGTTACATATGTTGCCGCAAAGCAGAACATTAATCT----AT
GCGTTGATATGTTGGATAGGGAGAGCAGAAAAATGGGCAAATGATTGCTGTGAAGGTACTTCATCC---CATTTCACGAC
TTGGTAATAAAGAATTTGAGAAGGAGTACCAGAACCTCGCAACTGTACAACATAAAAACATTGTGCGGTTAGTTGGCTAT
AGCCATGAAACTTTTGGAGAATTCAGACATTTTGAAGGAAGATCGCTTTTTATAGAAACGATAAAGAGAGCCCTTTGCTT
CAAGTATATGGAACATGGAAGCCTTGACAGGTTTCTTGCTGGTATGGTGCATGCTT------------------------
-----CTCTCATATTATTATGCACCACCTTGAGTAATC----AGAACATATACTTACTGATATGGCCATTTGTTTGTTGA
TGCAGATGAATCTAGTGGACATGATTGGCGCACACGCTTTGCAATAATTAAGGGGATTTGCCAGGGTTTAAAACACCTTC
AGGAGGAATTGAATCCTCCTATGTATCATTTGGATTTAAAACCAGCCAATATATTGCTGGATGAAAATATGGTGCCCAAA
ATCGCAGATTTTGGCTTGTCAAGGCTCTTTGGAGGAGAACAAACACAA--ATGACAAACACTCGTATAGGAACAATGTAA
GCTTAATCATCGATGTTAAACGTATTTATAGGAACAC-------------------------------------------
------------------------------------------TATTTACATTTGACCCATGGTATCAGTAACATATGTGA
TATGTCATTTTGTCATGCAGTGGTTTCATACCACCGGAATTTATTGACGCGGGTGTAATTTCTATTAAGTTTGATATATA
TAGTTTGGGGATGGTAATTATAAAGATAATGACAGGACCAGATGGGTACTTTCGAAGTGCTGAAATGTCTCCACAACAAT
TCGTAGAGCTTGTAAGAGAAATTGGTGCCTT-------------------------------------------------
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>chr2A_1759
GCATGT--------------------------------------------------------------------------
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-----GAGACATTGAATAGGGATTGCGTGCGAATGGGGAGAAGATTGCTGTGAAGATGCTTCATCC---CATTCTAGGAC
TTGATGATGAGCTATTTGAGAAGGAGTATCACAACCTTGAAATTCTCCAACACAAGAATGTTGTGCGTTTAGTTGGCTAT
TGCAATGAAACTCGGCGGGAATATGTGCCATACAATGGGAAAATGGTTCTCGGTGAAGTGACACATAGGGCGCTTTGCTT
CGAGTATATGCAAAATGGAAGCCTTAATGATTATCTCTCTGGTATGATGCATAATGTTCTACTTGTATTTACCTCAAAAA
AAATTCTCTACTTGTATTAGTATGTAATATCATACTT------TAATATAAACTTTTTGTGGATGCTC----TTCATTGC
TATAGATGAATCTAGTGGACATGATTGGCACACACGCTACGCAATAATAAAAGGAATTTCCAAGGGTTTGAAATACCTTC
ATGAGGAACTGGAACCTCCGATGTTTCATTTGGACTTAAAACCAGACAATGTATTGCTGGATGAGAACTGCGTGCCTAAA
ATTGGCGATTTTGGATTGTCAAGGCT------------------------------------------------------
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>chr2D_1759
GCATGT--------------------------------------------------------------------------
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-----GAGACATTGAATAGGGATTGCGTGCGAATGGGGAGAAGATTGCTGTGAAGATGCTTCATCC---CATTCTAGGAC
TTGATGATGAGCTATTTGAGAAGGAGAATCACAACCTTGAAATTCTCCAACACCAGAATGTTGTGCGTTTAGTTGGCTAT
TACAATGAAACTCGGCGGGAGTATGTGCCATACAATGGGAAAATGGTTCTTGGTGAAGTGACACATAGGGCGCTTTGCTT
CGAGTATATGCAAAATGGAAGCCTTAATGATTATCTCTCTGGTATGATGCATAATGTCCTACTTGTATTTACCTCGAAAA
AAAATCTCTACTTGTATTAGTAGGTAATATCATACTT------TAATATAAACTTTTTGTGGATGCTC----TTCATTGT
TATAGATGAGTCTAGTGGACATGATTGGCACACACGCTACGCAATAATAAAAGGAATTTCCAAGGGTTTCAAATACCTTC
ATGAGGAATTGGAACGTCCAATGTTTCATTTGGACTTAAAACCAGCCAATGTATTGCTGGATGAGAACTGCGTGCCTAAA
ATTGGCGATTTTGGATTGTCAAGGCT------------------------------------------------------
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>chr2B_1769
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----------ATTGAATAGGGGTTGCATACGAATGGGGAGAAGATTGCTGTGAAGATGCTTCATCC---CATGCTAGGAC
TTGATGATGAGCTATTTGAGAAGGAGTATCACAACCTTGAAAATCTCCAACACCAGAATGTTGTGCGTTTGGTTGGCTAT
TGCAATGAAACTCGACGGGAATATGTGCCATACAATGGGAAAATGGTACTTGGTGAAGTGACACATAGGGCTCTTTGCTT
CGAGTATATGCAAAATGGAAGCCTTAATGATTATCTCTCTGGTATGATGCATAATG------------------------
-----CTCTACTTGTATTAGTAGGTAATATCATATTT------TAATATAAACTTTCTGTGGATGCTA----TTCGTTGT
TATAGATGAATCTAGTGGACATGATTGGCACACACGCTATGCAATAATAAAAGGAATTTGCAAGGGTTTGAAATATCTTC
ACGAGGAATTGGAACCTCCAATGATTCATTCTGACTTAAAACCAGCCAATGTATTGCTGGATGAGAACTGCATGCCTAAA
ATTGGCGATTTTGGATTGTCGAGGCTAATGGA---AGAACAAACGCGTAT------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S-
--SS----S-----------------------S-----------------S-----S--S---------S----------
-------------------------------------S--------------------------S----S----------
-----------------S------------SS--------S-----S------S-------------S---S--------
---------------------------S-------S-------S-S----S---S-S-----------------------
------------------------------S---S-S-------S-----------S----------S---S-S------
-----------------SS-S--S---S---------------S---SSS-S-SSSSSSS----S--S------------
----------------------------S-S--------------S----------------------------------
------------S-----------SS-------------------S------------------------------S--S
--------S------------------------------------------------------S----S------S----
-----------SS------SS-SSSSSS--SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S----S-----------------------S---
-S---------------------S-S-S----S--S----S---S--S----S-S-S--SS--S-S-------------S
S--------SS--S-S--SS----------S--------SS-S--S------S---------------------------
--SS---S-----------S----S--S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS
>forward_913
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-------------GAGCGAGGCCGTAAATCTCA-----------------------------------------------
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>reverse_1975
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------------------------------------------------------CAGACGATAAAGAGGGCGCT------
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>forward_1255
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-----------------------------------AAGTGGCTATTCACTGCGCT-------------------------
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>reverse_3217
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----------------CCGCCCGCTAATCAAGGTAT--------------------------------------------
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----------------------
