>input_sequence_53908
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-----------------------------------------------ATGGAGGCCGAAAACAGCGAGGTGGCTGCTCTG
GTCGAGAAGATCACCGGCCTCCACGCCGCCATCTCCAAGCTCGCGTCTCTAAGCCCGTCCCCCGAAGTCGACGCGCTCTT
CACGGAGCTGGTCGCGGCGTGCGTCCCGTCGAGCCCGGTGGACGTGACCAAGCTCGGCCCGGAGGCGCAGGAGATGCGGC
AGGACCTCATCCGCCTCTGCTCGGCCGCCGAGGGGCTGCTCGAGGCGCACTACTCCAACATGCTCACCGCCTTGGACAAC
CCGCTCGACCACCTCGGCCGCTTCCCTTACTTCGACAACTACATCAACCTGAGCAAGCTCGAGCACGATCTTCTTGCCGG
TCACGTGGCG---------GCCCCGGCCCGCGTGGCGTTCATCGGGTCGGGGCCGCTGCCGTTCAGCTCCCTCTTCCTCG
CGATGTACCACCTGCCGGACACCCGGTTCGACAACTACGACCGGTGCAGCGTGGCCAATGGCCGTGCGATGAAGCTGGTC
GGCGCGGCGGAC----GAGGGCGTGCGTGCGCGCATGGCGTTCCACACGGCCGAAGTCGCGGACCTCACGGCTGAGCTCG
GCGCGTATGATGTGGTCTTCCTGGCGGCGCTCGTGGGAATGACGTCCGAGGAGAAGGCCAACACCATCGCGCACTTGGGG
AAGCACATGGCAGATGGCGCGGTGCTCGTCGCGCGAAGCGCCCACGGTGCGCGAGCGTTCCTGTATCCTGTAGTGGAGCT
GGACGATATCGGGCGTGGCGGGTTCCAAGTGCTGGCTGTGCACCATCCTGCGGGCGATGAGGTGTTCAACTCATTTATTG
TTGCGCGGAAGGTAAAGATATCACAAGAAATGAGTGCTTAAG------AAAGAGGGGAGCCTGGCTGCCTGAGCAA-TTG
TGTTTCACATTGATAGTAAGTAGATGATTCCCCGCACATTGATGCATGTACTGGTTGCAATATATTTCAATGATGTTTGG
TTGTATTGAACATGAGTATTTGGCTTAATAATATCGGATTG-AAACTGAAAATTGATATTCAGCTTTACCAGAGAACACT
TGAAGTGTAATGCAAATGAATCACAAGGTCTAGTTTTTTAGAATGGAATTAGAACATGAAAATCCACCGAGAAACTGTAC
TTTGTTCATAACATGTGACTAAACTTCTTGCAAGATTAATGTCAACCGTGGCAACACATTGTTCTTTTGGGTAGACTTGT
GATTTTATAATGGTTTGTTCTTGGTTGCAGCAGGAGCATATTTCTACCGTGGGCACTATAGGGTGCTCATGGCAGCACGA
ATGTATATGGACTACAATTGAGGGTGTGGCAGACGGAGAGATGTCATTCAAGTAA-------------------------
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---------------
>chr2B_1_TraesCS2B01G047100
AGCCCATCCGGCCCAACTCATTTATTATAGAATATAATCCAGCCCAACTCCTGGAATAATAATATTCCCTCAATCAAAAG
AAAAAACATACACG----ATGAGGCTGTCGTCAAGCTGGGTTTCTTCTCTCCCCCATTCCTCTCTCCGGTCTCCAGCCAA
AGAAGCCTTCCCGATCTGAACGCCGGCCACCACCTGGAGCGCGAGGGAGCT----CCGGCCGCCTCCCCACACCGTCCTC
CTTGCCGTAGCTGCCCCGCTGCAGGCGGCCGCGTCATCCCG------CCGCACCGGCCGGTCTCGACGCAGCCGGTGCCC
TCCTCCGCTTCGGGGGCCCTCCCCG------------------ACGACGGAGAGATACTTGTGCAGCCGCGAACGGCTGA
A-GGGGGCTCGCGGTGGAGCGGGAGAA------GACGCCGGCCGCCCCGCTGCGACGGGTAAGGCCAGTGA--------C
ACTGAAACTTCTTCAGT-CCCGCATCGCCAGTTCAGTCGGTTTTCGACTATCCACTGTCTCTATTTTGAGATTCACTTAG
ATACT-AGCTTAGATCTACCGAATTAGACATAAATTTTTTACATTCAACTTAGGTAGGAGTGGA----------------
--------------------------------------------------------------------------------
TCTGCCATTGTTCTTCTCCCCGGGCCTTAGCCTCCAGACC--------CGTAGGCACATGCCAGGGACTAAATTTATCCA
CCTATCCCCTCATTCCGA------------ATTTAGTATATTGTCAATCTAGTAGCTACCAAATCATGAGCTGGTCAGCA
AGATGCAATGACGCATGTCGGAAATTAGACGCATGGAGCAGGCCGTCACGTCTGTGCAAGCATGAAGCGTGCCTCGCATA
CGATTTCCATGCTACATACCACCCCTCACTCTCCACAGCTCATCATATTATATCAAGCATCGGCTCCATCAATCAGTTGC
AATTCCATTGATTTTTT-C-CCTTCATATTGTATCAAGCATCAGCTCCATCAATAGCACTACAGCCTACATTTGTTTTTC
AGAACAGCACTACAACACCAGCCATACCTACTTGGCAATCAAGTGACATGGAGGCCGAAAACAGCGAGGTGGCTGCTCTG
GTCGAGAAGATCACCGGCCTCCACGCCGCCATCTCCAAGCTCGCGTCTCTAAGCCCGTCCCCCGAAGTCGACGCGCTCTT
CACGGAGCTGGTCGCGGCGTGCGTCCCGTCGAGCCCGGTGGACGTGACCAAGCTCGGCCCGGAGGCGCAGGAGATGCGGC
AGGACCTCATCCGCCTCTGCTCGGCCGCCGAGGGGCTGCTCGAGGCGCACTACTCCAACATGCTCACCGCCTTGGACAAC
CCGCTCGACCACCTCGGCCGCTTCCCTTACTTCGACAACTACATCAACCTGAGCAAGCTCGAGCACGATCTTCTTGCCGG
TCACGTGGCG---------GCCCCGGCCCGCGTGGCGTTCATCGGGTCGGGGCCGCTGCCGTTCAGCTCCCTCTTCCTCG
CGATGTACCACCTGCCGGACACCCGGTTCGACAACTACGACCGGTGCAGCGTGGCCAATGGCCGTGCGATGAAGCTGGTC
GGCGCGGCGGAC----GAGGGCGTGCGTGCGCGCATGGCGTTCCACACGGCCGAAGTCGCGGACCTCACGGCTGAGCTCG
GCGCGTATGATGTGGTCTTCCTGGCGGCGCTCGTGGGAATGACGTCCGAGGAGAAGGCCAACACCATCGCGCACTTGGGG
AAGCACATGGCAGATGGCGCGGTGCTCGTCGCGCGAAGCGCCCACGGTGCGCGAGCGTTCCTGTATCCTGTAGTGGAGCT
GGACGATATCGGGCGTGGCGGGTTCCAAGTGCTGGCTGTGCACCATCCTGCGGGCGATGAGGTGTTCAACTCATTTATTG
TTGCGCGGAAGGTAAAGATATCACAAGAAATGAGTGCTTAAG------AAAGAGGGGAGCCTGGCTGCCTGAGCAA-TTG
TGTTTCACATTGATAGTAAGTAGATGATTCCCCGCACATTGATGCATGTACTGGTTGCAATATATTTCAATGATGTTTGG
TTGTATTGAACATGAGTATTTGGCTTAATAATATCGGATTG-AAACTGAAAATTGATATTCAGCTTTACCAGAGAACACT
TGAAGTGTAATGCAAATGAATCACAAGGTCTAGTTTTTTAGAATGGAATTAGAACATGAAAATCCACCGAGAAACTGTAC
TTTGTTCATAACATGTGACTAAACTTCTTGCAAGATTAATGTCAACCGTGGCAACACATTGTTCTTTTGGGTAGACTTGT
GATTTTATAATGGTTTGTTCTTGGTTGCAGCAGGAGCATATTTCTACCGTGGGCACTATAGGGTGCTCATGGCAGCACGA
ATGTATATGGACTACAATTGAGGGTGTGGCAGACGGAGAGATGTCATTCAAGTAAGACGGGGATGTCAACTTGCTGCTGA
GTGATTGGCATCTTAAGAACAATTACAACCAGATGGTTGGCCTCGTGGAACATGAGATGTATCAGCGAGCCACAGGTAAA
CTGTCGATGATCAGTCTCTGTTAAAAATTCAAACTGCAACGACCCAAGAACAGTTTGGTTACCTGGGAAGGGTCAAGCTT
TTCCGTGCTTTAAAACTCATGCAACTTCTATATTTGAAAAGGAGCACATCCCTCTCATAAGAGTTTTTGGTAGCCATAGA
GTTAAAAAGAATTACTGGCACAACAGACAGATACGTAGAACAGAACAAGGCAAGGCTGAATTATTTTGTTCCAAAAATGA
TTGCTCTTGTGAGTTAAATAATTGTTTAGGAGAAGTTTTTTGTTAGCTGGACCAGTCAATAAAGTTTAAAAGGAAGGAAA
AAAAAACAGATTATCTTCCCTCCCTGCATAAATGTCTTGTGGTGTCGAGGTTAATAGGTTTTTTTAGCTGCCGCATGGTG
AGTTGAGGAGATTCTATTTAGTGGTAGGTTGTGTGAGTTAGCCAGGGAGATTAGCAGGCCACCAGTTAGAAAACAGTGAT
TCTTCCCTTGCTTGCATCCACTGTTCTTGCATATACCTACATGTTGATTTCTTGTGATTGAATTGTTTTGAGTTTCAGAA
AACAGCTAGACTGGAATGTTAGAAAATAGAATTTAGAATCCCCGAACAACTTCAGGAGGGCCTACAAAAGACGCTTGTGC
ATATTGTTTTGTTTCAAAAGATGCTGTGCCGTCACCCTAAAGATTTTCCACCTTATGTACCTAAGCTTTTGCTTTGCTTC
TTTGCAGGCGATTTGTCGCGGTTTTGTGGTCTTTTTGGAATATTTGGCGCAAAAGAAGAGCATAATCTGAGCTGACGGAA
GCATGTCCTGCAGCACCCAGAGGATGGATGGGCACATATTCGCTTCCCCTCGAGCCGCGTGATATCTCATGTGGCTCTGC
CGCGTCGCGAGCACG
>chr2D_1
AGCCCATCCAGCCCAACTCCTTTCTAGA-----ATAATCCAGCCCAACTCCCGGAATAATAATATTCCCTCAATCAAAAG
AAAAAACATACACG----ATGCGCCTGTCGTCAAGCTCGGTTTCTCCTCTCCCCGATTCCTCTCTCCAGTCTCCAGCCAA
AGAAGCCTTCCCGATCTGAACTCCGGCCACCACCTGCAGCGCGAGGGAGCT----CCGGCCGCCTCCCTGCACCGTCATC
CTCGCCATCGCTGCCCCGCTGCAGACGGCAGCGTCATCCCGTTCCCGCCG-------------GGACGCAGCCGGTGCCC
TCCTCCGCTTCGGGGGCCCGGGAACGTCGCCGGCCTCCCCTCCACGACGGAGAGAGACTCGTCAGGCCGCGGAAGGCTGA
AGGGGGCCTCGCGGTGGAGCGGGAGCG------GACGCCGGCCGGCCGGCTGCTACGGGTAAGGCCAGTGG--------T
ACTGAAGCTTTTTCTGTGCCCGCATCGCCAGCTCAGTCGGTTTCCCACCGTCCACTGTCTCTATACTGAGATTTACATAG
AGACTAAGCTTAGATCTACTGATTTAGACAAAAGAAAATCACATTCAACTTAGGTAGATCTT------------------
--------------------------------------------------------------AGTAAAGAACAACTCTAT
TCTGCCATTTTTCTTCAGATCCGAGTGAATATTCAACAGAGGTTGGCTCGTAGGCACATGCCAGAGACTAAATTTACCCA
CCTATCCCCTCATTCCAA------------ATTTAGTATATCGTCAAGC---TAGCTACCAAATCATGAGCTGGTCAGCA
AGATGCAATGCCGCATGTCGGAAATTAGAGGCACGAAGCAGGCCGTCACGTCTGTGCAAGCATGAAGCGCGCCACGCATA
CGATTTCCATGCTACATACCACCCCTCACTCTCCACAGCTCATCGAACTGC-----------------TCAATCAATTGC
AATTCCATTGATTTTTTTTTCCTTCGTATTATATCAAGCATCAGCTCCATC-ATAGCACTACAGCCTACATTTGTTTTTC
AGAACAGCACTACAACACCAGCCATACCTACTTGGCAGTCAAGTGACATGGAGGCCGAAAACAGCGAGGTGGCTGCTCTG
GTCGAGAAGATCACCGGCCTCCACGCCGCCATCTCCAAGCTCCCGTCGCTAAGCCCGTCCCCCGAAGTCGACGCGCTCTT
CACTGAGCTGGTCGCGGCGTGCGTCCCGTCGAGCCCGGTGGACGTGACCAAGCTCGGCCCGGAGGCACAGGAGATGCGGC
AGGACCTCATCCGCCTCTGCTCGGCCGCCGAGGGGCTGCTCGAGGCGCACTACTCCGACATGCTCACCGCCTTGGACAAC
CCGCTCGACCACCTCGGCCGCTTCCCTTACTTTGACAACTACATCAACCTGAGCAAGCTCGAGCACGATCTTCTGTCCGG
TCACGTGGCA---------GCCCCGGCCCACGTGGCGTTCATCGGGTCGGGACCGCTGCCGTTCAGCTCCCTCTTCCTCG
CGACGTACCACCTGCCGGACACCCGGTTCGACAACTACGACCGGTGCAGCGTGGCCAATGGCCGGGCGAGGAAGCTGGTC
GGCGCGGCGGAC----GAGGGCGTGCGCGCGCGCATGGCGTTCCACACGGCCGAAGTCGCGGACCTCACGGCTGAGCTCG
GCGCGTATGATGTGGTCTTCCTGGCGGCGCTCGTGGGAATGACGTCCGAGGAGAAGGCCGACGCCATCGCGCACTTGGGG
AAGCACATGGCAGATGGGGCGGTGCTCGTCGCGCGAAGCGCCCACGGGGCGCGAGCGTTCCTGTATCCTGTAGTGGAGCT
GGACGATATCGGGCGTGGCGGGTTCCAAGTGCTGGCCGTGCACCACCCTGCAGGCGATGAGGTGTTCAACTCATTCATTG
TTGCACGGAAGGTGAAGATATCACAGGAAATGAGTGCTTAAACTAAGAAAAAAGAGGAGCCTGGCTGCCTGTGCAAATTG
TGTCTCACATTGATAATAACTGGATGATACCCCGCACATTGATGCGGATACTGGTTGCAATATGTTTCAACGATGTTTGA
TTGT----AACATGAGTATTTGGCTTAATAATATCAGTATCAAAACTGAAAAT---------------------------
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---------------
>chr2A_1
AGCCCATCCAGCCCAACTCCTTTATAGA-----ATAATCCAGCCCAACTCCTGGAATAATAATATTCCGTCGATCAAAAG
AAAAATCATACTGACGATATGCGCCTTTGGTCAAGCTCGGTTTCTCCTCTCCCCCATTCCTCTCTCCAACCTCCAGCCAA
AGAAGCGCTCCCGATCTGAAATCCGGCCACCACCTGCAGCGCGACGGAGCTGATCCCGGCCGCCTCCCCGCACCGTCATC
CCTGCCTTCGCCTCCCCGCTGCAGACGGCGGCGTCATCCCG------CCG-------------CGACGCAGCCGGTGCCC
TCCTCCGCTTCGGGGGCCCGAGAAGGTCGCCGTCCTCCCC-CCACGACGGAGAGATATTCGTGCGGCCGCGAACGGCTGA
AGGGGGACTAGCGGTGGAGCGGGAGCGGGAGCAGACGCCGGCCGGCCGGCTGCTACGGGTAAGGCCAGTGCTACTGTGCT
ACTGAAGCTTTTTCAGTGCCCGCATCGCCAGTTCAGTCGGTTTCCCACCGTCCACTGTCTCTATATTGAG----------
----------------TACTGATTTAGACAAAATAAAATCACATTCAACTTAAGGTGTTCCCTGGTGAACTGAATTTCTG
GGAACATCAATAGAAGAATGACTGTGCGCTCTAATTTGGTAGAGAAAGATCCTAATTTATTCAGTAAAGAACAACTCTAT
TCTGCCATTTTTCTTCAGATCCGAGTGAATATTCAACAGAGGTTGGCTCGTAGGCACATGCCAGAGACTAAATTTATCCA
CCTATCGGCCTATCCCCCCACTCCAAATTTATTAGGTATATTGTCAAGC---TAGCTACCAAATCATGAGCTTGTCAGCA
AGATGCAATGACGCATGTCGGAAATTAGAGGCGCGAAACAGGCCGTCACGTCTGTGCAAGCATGAAGCGCGCCTCGCATA
CGATTTCCATGCTACATACGACCCCTCACCCTCCACAGCTCATCAAACTGC-----------------TCAATCAATTGC
AATTCCATTGATTTTTTTC-CCTTCATATTGTATCAAGCATCAGCTCCATC-ATAGCACTACAGCCTACATTTGTTTTTC
AGAACAGCACTACAACACCAGCCATACCTACTTGGCAATCAAGTGACATGGAGGCCGAAAACAGCGAGGTGGCTGCTCTG
GTCGAGAAGATCACCGGCTTCCACGCCGCCATCTCCAAGCTCCCGTCGCTAAGCCCGTCCCCTCAAGTCGACGCGCTCTT
CACCGAGCTGGTCGCGGCGTGCGTCCCGTCGAGCCCGGTGGACGTGACCAAGCTCGGCCCGGAGGCGCAGGAGATGCGGC
AGGACCTCATCCGCCTGTGCTCAACCGCCGAGGGGCTGCTCGAGGCGCACTACTCCGACATGCTCACCGCCTTGGACAGC
CCGCTCGACCACCTCGGCCGCTTCCCTTACTTTGACAACTACATCAACCTGAGCAAGCTCGAGAACGACCTTCTGGCCGG
TCACATGGCG---------GCTCCGGCCCGCGTGGCGTTCATCGGGTCAGGGCCGCTGCCGTTCAGCTCGCTCTTCCTCG
CGACATACCACCTGCCGGACACCCGCTTCGACAACTACGACCGGTGCAGCGTGGCCAATGGCCGGGCGATGAAGCTGGTC
GGCGCGGCGGAT----GTGGACGTGCGCTCGCGCATGCCGTTCCACACGGCCGAAGTCGCGGACCTCACGTCTGAGCTCG
GCGCGTACGACGTGGTTTTCCTGGCGGCGCTCGTGGGGATGACGTCCGAGGAGAAGGCCAACACCATCGCGCACTTGGGG
AAGCACATGGCAGATGGGGCGGTGCTCGTCGCGCGAAGCGCGCACGGGGCGCGAGCGTTCCTCTATCCTGTAGTGGAGCT
GGACGATATCGGGCGTGGCGGGTTCCAAGTGCTGGCCGTGCACCACCCTGCAGGTGATGAGGTGTTCAACTCATTCATTG
TTGCACAGAAGGTGAAGATATGATAGGAAATGAGTGCATAAATGAAGAAAAG-GGGGAGCCTGGCTGCCTGTGCCAATTG
TGTCTCACATTGATA-----------------------------------------------------------------
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>chr6A_999
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---------------------------------------------ACATGGATGCCCAGAACAAGGAGGTCGATGCCCTG
GTCCAGAAGATCACCGGCCTCCACGCCGCCATCGCCAAGCTGCCCTCGCTCAGCCCGTCCCCCGACGTCGACGCGCTCTT
CACCGACCTGGTCACCGCGTGCGTCCCCCCGAGCCCCGTGGACGTGACCAAGCTCGGCCCGGAGGCACAGGCGATGCGGG
AGGGCCTCATCCGCCTCTGCTCCGAGGCCGAGGGGAAGCTGGAGGCGCACTACTCCGACATGCTCGCCGCCTTCGACAAC
CCGCTCGACCACCTCGGCGTCTTCCCCTACTACAGCAACTACATCAACCTCAGCAAGCTGGAGTACGAGCTCCTGGCGCG
CTACGTCCCCGGCGGCATCGCCCCGGCCCGTGTCGCCTTCATCGGCTCCGGCCCGCTGCCGTTCAGCTCGTACGTCCTCG
CCGCACGCCACCTGCCCGACGCGGTGTTCGACAACTACGACCTGTGTGGCGCGGCCAACGACCGTGCGAGCAAGCTGTTC
CGCGCC---GAC----AAGGACGTGGGCGCACGCATGTCATTCCACACCGCCGACGTAGCGGACCTCACCGACGAGCTCG
CCACGTACGACGTCGTCTTCCTGGCCGCGCTCGTGGGCATGGCTGCCGAGGACAAGGCCAAGGTGATCGCACACCTTGGC
GCGCACATGGCGGACGGGGCGGCCCTCGTCGTGCGGAGCGCGCACGGGGCGCGTGGGTTCCTGTACCCGATCGTCGATCC
CCAGGACATCGGCCGAGGCGGGTTCGAGGTGCTCGCCGTG----------------------------------------
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>chr6A_999
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---------------------------------------------ACATGGATGCCCAGAAGATGGAGGTCGCTGCTCTG
ATCGAGAAGATCGCCGGTCTCCAGGCCGCCATCGCCGGGCTGCCGTCGCTGAGCCCGTCCCCTGAGGTCGACAGGCTCTT
CACCGACCTCGTCACCGCGTGCGTCCCGCCGAGCCCCGTCGACGTGACGAAGCTCAGCCCGGAGCACCAGAGGATGCGGG
AGGCGCTCATCCGCCTCTGCTCCGCCGCCGAGGGGAAGCTCGAGGCGCACTACGCCGACCTGCTCGCCACCTTCGACAAC
CCGCTCGACCACCTCGGCCGCTTCCCCTACTACAGCAACTACGTCAACCTCAGCAGGCTGGAGTACGAGCTGCTGGCGCG
CCACGTGCCGGGC---ATCGCGCCGGCGCGCGTCGCCTTCGTCGGCTCCGGCCCGCTGCCGTTCAGCTCGTTCGTCCTCG
CCGCGCACCACCTGCCCGACGCGCAGTTCGACAACTACGACCTGTGCGGCGCGGCCAACGAGCGCGCCAGGAAGCTGTTC
GGCGCGAGGGAG----GACGGCGTGGGCGCGCGCATGAAGTTCCACACGGCGGACGTCGCCGACCTCACGCAGGAGCTCG
GTGCGTACGACGTGGTCTTCCTCGCCGCGCTCGTCGGCATGGCGGCCGAGGAGAAGGCCAAGGTGATAGCCCACCTGGGC
GCGCACATGGTGGAGGGGGCGTCCCTGGTCGTGCGGAGCGCGCACGGCGCTCGCGGCTTCCTGTACCCCATCGTCGACCC
GGAGGACATCAGGCGGGGCGGGTTCGAGGTGCTGGCCGTGCACCACCCCGAAGGTGA---GGTGATCAACTC--------
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>chr6D_999
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---------------------------------------------ACATGGATGCCCAGAACAACGAGGTCGCTGCTCTG
ATCGAGAAGATCGCCGGTCTCCAGGCCGCCATCGCTGAGCTGCCGTCGCTGAGCCCGTCCCCCGAGGTCGACAGGCTCTT
CACCGCCCTCGTCACGGCCTGCGTCCCGCCGAGCCCCGTCGACGTGACGAAGCTCAGCCCGGAGCACCAGAGGATGCGGG
AGGCGCTCATCCGCCTCTGCTCCGCCGCCGAGGGGAAGCTCGAGGCGCACTACGCCGACCTGCTCGCCACCTTCGACAAC
CCGCTCGACCACCTCGGCCGCTTCCCCTACTACAGCAACTATGTCAACCTCAGCAGGCTGGAGTACGAGCTCCTGGCGCG
CCACGTGCCGGGC---ATCGCGCCGGCGCGCGTCGCCTTCGTCGGCTCCGGCCCGCTGCCGTTCAGCTCGTTCGTCCTCG
CCGCGCACCACCTGCCCGACGCCCAGTTCGACAACTACGACCTGTGCGGCGCGGCCAACGAGCGCGCCAGGAAGCTGTTC
GGCGCGAGCGAG----GACGGCGTGGGCGCGCGCATGAAGTTCCACACGGCGGACGTCGCCGACCTCACGCAGGAGCTCG
GCGCGTACGACGTGGTCTTCCTCGCCGCGCTCGTCGGCATGGCGGCAGAGGAGAAGGCCAAGGTGATAGCCCACCTGGGC
GCGCACATGGTGGAGGGGGCGTCCCTGGTCGTGCGGAGCGCGCACGGCGCCCGCGGCTTCCTGTACCCCATCGTCGACCC
GGAGGACATCAGGCGGGGCAGGTTCGAGGTGCTGGCCGTGCACCACCCCGAAGGTGA---GGTGATCAACTC--------
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>chr6D_999
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---------------------------------------------ACATGGATGCCCAGAACAAGGAGGTCGCTGCTCTG
ATCGAGAAGATCGCCGGTCTCCAGGCCGCCATCGCCGCGCTGCCGTCGCTGAGCCCGTCCCCCGAGGTCGACAGGCTCTT
CACCGACCTCGTCACCGCGTGCGTCCCGCCGAGCTCCGTCGACGTGACGAAGCTCAGCCCGGAGCACCAGAGGATGCGGG
AGGCGCTCATCCGCCTCTGCTCCGCCGCCGAGGGGAAGCTCGAGGCGCACTACGCCGACCTGCTCGCCACCTTCGACAAC
CCGCTCGACCACCTCGGCCGCTTCCCCTACTACAGCAACTACGTCAACCTCAGCAGGCTGGAGTACGAGCTCCTGGCGCG
CCACGTGCCGGGC---ATCGCGCCGGCGCGCGTCGCCTTCGTCGGCTCCGGCCCGCTGCCGTTCAGCTCCTTCGTCCTCG
CCGCCCACCATCTGCCCGACGCGCACTTCGATAACTACGACCTGTGCGGCGCGGCGAACGAGCGCGCCAGGAAGCTGTTC
GGCGCGAGCGAG----GACGGCGTGGGCGCGCGCATGAAGTTCCACACGGCGGACGTCGCCGACCTCACGCAGGAGCTCG
GCGCGTACGACGTGGTCTTCCTCGCCGCGCTCGTCGGCATGGCGGCCGAGGAGAAGGCCAAGGTGATAGCCCACCTGGGC
GCGCACATGGTGGAGGGGGCGTCCCTGGTCGTGCGGAGCGCGCACGGCGCGCGCGGCTTCCTGTACCCCATCGTCGACCC
GGAGGACATCAGGCGGGGCGGGTTCGAGGTGCTGGCCGTGCACCACCCCGAAGGTGA---GGTGATCAACTC--------
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>chr4D_1001
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-----------------------------------------------ATGGATGCCCAGAACAAGGAGGTCGCCGCCCTG
GTCCACAAGATCACCGGCCTCCACGCCGCCATCGCCAAGCTGCCGTCCCTCAGCCCATCCCCCGACGTCGACGCGCTCTT
CACCGACCTGGTCACCGCGTGCGTCCCCCCGAGCCCCGTGGACGTGACCAAGCTCGGCCCGGAGGCGCAGGAGATGCGGG
AGGGCCTCATCCGCCTCTGCTCCGAGGCCGAGGGGAAGCTGGAGGCGCACTACTCCGACATGCTCGCCGCCTTCGACAAC
CCGCTCGACCACCTCGGCATCTTCCCCTACTACAGCAACTACATCAACCTCAGCAAGCTGGAGTACGAGCTCCTGGCGCG
CTACGTGCCCGGCGGCATCGCCCCGGCCCGCGTCGCCTTCATCGGCTCCGGCCCGCTGCCGTTCAGCTCCTACGTCCTCG
CCGCCCGCCACCTGCCCGACACCATGTTCGACAACTACGACCTGTGCGGCGCGGCCAACGACCGCGCGAGCAAGCTGTTC
CGCGCC---GAC----AAGGACGTGGGCGCCCGCATGTCGTTCCACACCGCCGACGTCGCGGACCTCGCCGGCGAGCTCG
CCGCGTACGACGTCGTCTTCCTGGCCGCGCTCGTGGGCATGGCTGCCGAGGACAAGGCCAAGGTGATCGCGCACCTCGGC
GCGCACATGGCGGACGGGGCGGCCCTCGTCGTGCGCAGCGCGCACGGCGCGCGTGGGTTCCTGTACCCGATCGTCGATCC
CCAGGACATCGGCCGAGGCGGGTTCGAGGTGCTGGCCGTG----------------------------------------
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---------------
>chr4B_1001
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-----------------------------------------------ATGGATGCCCAGAACAAGGAGGTCGACGCCCTG
GTCCACAAGATCACCGGCCTCCACGCCGCCATCGCCAAGCTGCCGTCCCTCAGCCCATCCCCCGACGTCGACGCGCTCTT
CACCGACCTGGTCACCGCGTGCGTCCCCCCGAGCCCCGTGGACGTGACCAAGCTCGGCCCGGAGGCGCAGGAGATGCGGG
AGGGCCTCATCCGCCTCTGCTCCGAGGCCGAGGGGAAGCTGGAGGCGCACTACTCCGACATGCTCGCCGCCTTCGACAAC
CCGCTCCACCACCTCGCCATCTTCCCCTACTACAGCAACTACATCAACCTCAGCAAGCTGGAGTACGAGCTCCTGGCGCG
CTACGTGCCCGGCGGCATCGCCCCGGCCCGCGTCGCGTTCATCGGCTCCGGCCCGCTGCCGTTCAGCTCCTACGTCCTCG
CCGCCCGCCACCTGCCCGACACCATGTTTGACAACTACGACCTGTGTGGCGCGGCCAACGACCGTGCGAGCAAGCTGTTC
CGCGCG---GAC----AAGGAAGTGGGCGCCCGCATGTCGTTCCACACCGCTGACGTCGCGGACCTTGCCGGCGAGCTCG
CCGCGTACGACGTCGTCTTCCTGGCCGCGCTCGTGGGCATGGCCGCCGAGGACAAGGCCAAGGTGATCGCACACCTCGGC
GCGCACATGGCGGACGGGTCGGCCCTCGTCGTGCGCAGCGCGCACGGGGCGCGTGGGTTCCTGTACCCGATCGTCGATCC
CCAGGACATCGGCCGAGGCGGGTTTGAGGTGCTGGCCGTG----------------------------------------
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---------------
>chr4A_1002
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------------------------------------------------TGGATGCCCAGAACAAGGAGGTCGACGCCCTG
GTCCATAAGATCACCGGCCTCCACGCCGCCATCGCCAAGCTGCCGTCCCTCAGCCCATCCCCCGATGTCGACGCGCTCTT
CACCGACCTGGTCACCGTGTGCGTGCCCCCGAGCCCCGTGGACGTGACCAAGCTCGGCCCGGAGGCGCAGGAGATGCGGG
AGGGCCTCATCCGCCTCTGCTCCGAGGCCGAGGGGAAGCTGGAGGCGCACTACTCCTACATGCTCGCCGCCTTCGACAAC
CCGCTCGACCACCTCGGCATCTTCCCCTACTACAGCAACTACATCGACCTCAGCAAGCTCGAGTACGAGCTCCTGGCGCG
CTACGTGCCCGGCGGCATCGCCCCGGCCCGCGTCGCCTTCATCGGCTCCGGCCCGCTGCCGTTCAGCTCCTACGTCCTCG
CCGCCCGCCACCTGCCCGACACCATGTTCGACAACTACGACCTGTGCGGCGCGGCCAACGACCGCGCGAGCAAGCTGTTC
CGCGCC---GAC----AAGGACGTGGGCGCCCGCATGTCTTTCCACACCGCCGACGTCGCGGACCTCGCTGGCGAGCTCG
CCGCGTACGACGTCGTCTTCCTGGCCGCGCTCGTGGGCATGGCTGCCGAGGACAAGGCCAAGGTGATCGCGCACCTCGGC
GCGCATATGGCGGACGGGGCGGCCCTCGTCGTGCGCAGCGCGCACGCCGCGCGTGGGTTCCTGTACCCGATCGTCGATCC
CCAGGACATCGGTCGCGGCGGGTTCGAGGTGCTGGCCGTG----------------------------------------
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---------------
>chr2A_1443
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------------------ACACCCGGTTCGACAACTACGACCGGTGCAGCGTGGCCAATGGCCGGGCGAGGAAGCTGGTC
GGTGCC---GACGGACGAGGACGTGCAATCGCGCATGGTGTTCCACACGACCGAAGTCGCAGACCTCACGTCCGAGCTCG
GCGCGTATTATGTGGTCTTCCTGGCGGCGCTCGTGGGAATGACGTCTGAGGAGAAGGCCGGCGCCATAGCGCACTTGGGG
AAGCACATGGCAGATGGGGCGGTGCTCGTCGCGCGAAGCGCGCACGGGGCGCGAGCGTTCCTGTATCCTGTAGTGGAGCT
GGACGATATCGGGCGTGGCGGGTTCCAAGTGCTGGCCGTGCACCATCACGCGGGCGATGAGGTGTTCAACTCATTTACTG
TTGCACGGAAGGTGAAGATATCACAAGAAATGAGTGCATAAATGAAGAAAAG-GGGGAGCCTGGCTGCCTGTTCCAATTA
TGTCTCACATTGATAATAACTGGATGATACCCCGCACATTGATGCGGGTACTGGTTGCAATATGTTTCAATGATGTTTGA
TTGT----AACATGAGTATTTGGCTTAATAATATCAGTATCAAAACTGAAAAT---------------------------
--------------------------------------------------------------------------------
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---------------
>SNPs
---------S---------S-----SSSSSSSS-----------------------------------------------
---------------------S-S-------------S-------S---------------------S------------
---------------------S--------------S--------------------------------S-------S--
------S-S---------------S----S--------------------SSSSSSSSSSSSS-----------------
-------------------SSSSS-----------------------------------S----S---------------
------S------------------SS-----------------S--S-----S----------------S--------S
------S---S--------------------------------S-S--SS--------------S--------S--S---
-S-----------------S--S-------S--SSSSS-S-----------------SSS-SSS----------------
--------------------------------------------------------------------------------
---------S------SSSS-S-SSSSS-SSS--S-S-SS------------------------S---------------
----------------S------------------------------S-SSS----------------------------
-----------------------------S---S-S---------------------------------S----------
---------------------------------------------S-S-SSSSSSSSSSSSSSSSSSS-------S----
---------------------------------------------------S----------------------------
--------------------------------------------------------------------------------
------------------------------------------S----S--------------------------------
---S----------------------------------------------------------------------------
--------------------------------------------------------S-----------------------
--------------------------------------------------------------------------S-----
--------------------------------------------------------------------------------
---S----------------------------------------------------------------------------
---------------------------S----------------------------------------------------
--------------------------------------------------------------------------------
-----------------S-----------------------------S--------------------------------
------------------------------------S-------------------------------------------
----S--------S---------------------------S-----------------------------S--------
---S-----------S---S-S------S----------------SS----------------S---------------S
----SSSS---------------------------S-SS-S------------SSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS
>forward_182
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--AAGCCTTCCCGATCTGAACG----------------------------------------------------------
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---------------
>reverse_2363
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------------------------CAACCGTGGCAACACATTGT------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------
>forward_524
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------TCGCCAGTTCAGTCGGTTTT------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------
>reverse_2421
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------TTGGTTGCAGCAGGAGCATA----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------
>forward_526
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------GCCAGTTCAGTCGGTTTTCG----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------
>reverse_2617
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------ATGTATCAGCGAGCCACAGG----
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------
