>input_sequence_53891
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-----------ATGGAGCCTGCGGTGAGAGCTGAAGACGAGGCGATGAGCACGGAGGAGCTGCTCCAAGCCCAGACGGAT
CTCTACCACCACTCCCTAGCCTACATCAAGTCTATGGCGCTTGGTGCCGCCACAGAACTCGGCGTCGCCGACGCCATCCA
CGGCCGTGGCGGTGCCATCACCTTGTCTCACCTTGCGGCCGCGACCGGCGTCCACCCGACGAAAGTCCAACACTTCGGGC
GGCTGATGCGCGCGCTTACCGTCACTGGTGTCTTCACCTCGGAGGAAAAAGAAGGCGGTGGTGGTGCCCTGTACAAGCTC
ACTCGGATTTCACGCCTCCTTGTCGGAGTCGGCAAGCGTCGGCTCTCCCCGATGGTGCGTATGCTTGTCAGCGAGGTCAG
TTTCACCACTCCCATGAGCATCTGCGAGTGGATCACCACTGATACGCCGGCCAGGGCCATGTTCGAGGCCCATTTTGGCT
CTACGCAAAATGGGTTGTGGGAGAAGGAGGACGCGTATGGTGCCCCCTTCTACTCAGCAATGTCTGCGGACAGCCGTGTC
GTCATGGAGGTTCTGCTGAGAGAGTGCAGCAGCGTCTTTGAGGCCGTCGCCGGCTCACTTGTCGATGTCGGCGGCGGCAG
CGGTGGAGTCGTGGCTGCCGCCATCGCCACAGCGTTCCCTCACATCAAGTGCTCCGTGCTGGACCTCCCCAACGTGGTAG
CAGCGGCCGACGACACCAGCAACGTGCAGTTCGTCTCCGGCGATATGTTTGACTACATTCCACCAGCGGATGCCGTTCTA
CTCAAGGTACCTAGCTACA---TACTCCCTCCGTTTCAAAATAGATTAGTCAACTTTGTACTAACTTTAATATAAAGTTA
ATACAAAGTTGAGTCATCTACTTTGGAACGGGTACTAACTTTAGTATAACGTTAGTACAAAATTGAATCATCTTTTTTAC
AACGGAGGAAGTACATAGTAGTAGTACATACAAATGCAGCAAGCTATCCATTTCTTCTATATACAATGAACCAAATTAGT
CAACCAATCCTTCCAATAAATTTTGTAGTGGATTCTGCATGACTGGGAAGACCAAGACTGCGTCAAGATACTGCGCAAGT
GCAGAGAGGCCATCACCACAAGAGGTGCTGGGGGGAAGGTGATTATAATCGATTTCGTCGTCGGTGCTGGTTCTTCCAAG
GAGACGGAGACACAGGTTCTGTTTGATCTTTACATGATGATGGAGAATGGGGCTGAGCGGGACGAGCACGAGTGGAGCAA
GATTTTCTTTGAAGCTGGATTTAGCGACTACAAGATCATGCCAGTCTTAGGCGCTCGTTCACTCATTCAAGTATTCCCAT
GA------------------------------------------------------------------------------
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>chr1B_1_TraesCS1B01G016600
CGTGTTTTGCAAGTGGTGACAATATGTATGAATTTGTGACTTGTGTGTGACGTCTACTAGGATAATACATTTGACTTGTG
TGTGACAATATATGGACTATCCCTAATTATGC--ATATAT--ATGTGGACTAGATCAAATTATGCCTATATATGATCAAA
TTATGCCTATATATGTGTGGACTAGATCAAATTATGCCTATATATGATCAAATTGCACTGTAGTTGTTTTTATCTGCAGG
GATCAGAAAAAAAATAGCTTC-ACAGCAGAATGGATGGGAAAGATTTCCGAGAGCAACACTCGGAAAACGACATACTACC
GAGAGCTCCTCTCGGAAACATGGTCGTCTGG--GA--CACTACTGTTGTGCCACAACTTTTTCGAGAGCAGCTCTCGGAA
AAGAAGGCAAGCATTGCCGAGAGTAGCTCTCGGCAAAGCTATGTAAACTGCCAG-CCCCCATGCGGGCCACGCTGTGGTA
CTGGTTAGAAGGATTGCCGAGAGCTGCTCTCGGCAAAGATATCGTCATTTA--TTT-CAAAAATATTTAGCAAGTTATTT
A-AAACTTTTACTGATA-----AATGTGACCGGTGGGACCACATGTCAGTTAGAAAGAACACACAAAAA-----------
AATA------GGATGTTCCATATGCTTTGCCGAGAGTGACA--------CTCGGCAAAGTACGCAGTAACTAACGGAGCC
GTCTGTTGCGGACGGGCATGCCACGTGGCTCCTCTTTGCCGTGAGCGGCTCTCGGCGTCTGCAGGGTTTGCCGTGCGATG
CCTCTTTACCGTGAGGCGGTGACGGCAAAAATGGCAGTTTGCCGTGAAA---GTGGGTTTGCCGAGAGTGACCACTCGGC
GAAGAGCGTTACACCCGGCGTA----AAAATTCCAGTAGTGTTGTCTTGTATTCTTGTGTGACAATGTTCGTACAATATA
AAAGGGCTAGGTGGGAAGATAAGACCCCCATATCTAAAAGTTGCCTGGCTACGAGTTGTAGTAGACCCAGAGCCTGATTG
GATTGTACTAGATGGAGCCTGCGGTGAGAGCTGAAGACGAGGCGATGAGCACGGAGGAGCTGCTCCAAGCCCAGACGGAT
CTCTACCACCACTCCCTAGCCTACATCAAGTCTATGGCGCTTGGTGCCGCCACAGAACTCGGCGTCGCCGACGCCATCCA
CGGCCGTGGCGGTGCCATCACCTTGTCTCACCTTGCGGCCGCGACCGGCGTCCACCCGACGAAAGTCCAACACTTCGGGC
GGCTGATGCGCGCGCTTACCGTCACTGGTGTCTTCACCTCGGAGGAAAAAGAAGGCGGTGGTGGTGCCCTGTACAAGCTC
ACTCGGATTTCACGCCTCCTTGTCGGAGTCGGCAAGCGTCGGCTCTCCCCGATGGTGCGTATGCTTGTCAGCGAGGTCAG
TTTCACCACTCCCATGAGCATCTGCGAGTGGATCACCACTGATACGCCGGCCAGGGCCATGTTCGAGGCCCATTTTGGCT
CTACGCAAAATGGGTTGTGGGAGAAGGAGGACGCGTATGGTGCCCCCTTCTACTCAGCAATGTCTGCGGACAGCCGTGTC
GTCATGGAGGTTCTGCTGAGAGAGTGCAGCAGCGTCTTTGAGGCCGTCGCCGGCTCACTTGTCGATGTCGGCGGCGGCAG
CGGTGGAGTCGTGGCTGCCGCCATCGCCACAGCGTTCCCTCACATCAAGTGCTCCGTGCTGGACCTCCCCAACGTGGTAG
CAGCGGCCGACGACACCAGCAACGTGCAGTTCGTCTCCGGCGATATGTTTGACTACATTCCACCAGCGGATGCCGTTCTA
CTCAAGGTACCTAGCTACA---TACTCCCTCCGTTTCAAAATAGATTAGTCAACTTTGTACTAACTTTAATATAAAGTTA
ATACAAAGTTGAGTCATCTACTTTGGAACGGGTACTAACTTTAGTATAACGTTAGTACAAAATTGAATCATCTTTTTTAC
AACGGAGGAAGTACATAGTAGTAGTACATACAAATGCAGCAAGCTATCCATTTCTTCTATATACAATGAACCAAATTAGT
CAACCAATCCTTCCAATAAATTTTGTAGTGGATTCTGCATGACTGGGAAGACCAAGACTGCGTCAAGATACTGCGCAAGT
GCAGAGAGGCCATCACCACAAGAGGTGCTGGGGGGAAGGTGATTATAATCGATTTCGTCGTCGGTGCTGGTTCTTCCAAG
GAGACGGAGACACAGGTTCTGTTTGATCTTTACATGATGATGGAGAATGGGGCTGAGCGGGACGAGCACGAGTGGAGCAA
GATTTTCTTTGAAGCTGGATTTAGCGACTACAAGATCATGCCAGTCTTAGGCGCTCGTTCACTCATTCAAGTATTCCCAT
GAATTCCGGGGGTTTCGTGTCCAAATGTACTTCCCATTTCCAAATGTTTGCTTGCTTTCGAATCGGAATAATGCCTAGGA
CTATACTATATAGTCTCGACTTTGAAGCTGAATAATGAAACTGTTTGTTATCCTATGTGTTGTTTTCATTCATAATTCAT
ATGCTCATAATTAAATAAAGGCTGCTATTTTTGTTTACATTAAAATATAGTTTACCTAGCAATATGGTAAACAGGCTCAC
TTAGCTGAGGCTGGCTTGTTCGCTTATTCGCCGCCCTAGGAATGTGAGCTCCTTGCGGAACTGAAATTCAATGAAATTCT
AGCGGCACTGGTTACTATCGGGGTTCTTCATGTTCGTCATGTGTGCAAGTACACGCAATTCATACGAGTACTCTACTGAA
TTCAACTGTTTCGTACTGTTTTCATTGGACCACCCACTGTATAGGAACATTGTTAACTTTTGAACCAATGACCCGATTTC
GAATCCAGTTGCAGATTCGTGTTCATGACATTTGAGTCTATAAAACAAGATCAAACTTGAACTTGTTCTGAACACGTACA
AATTCAAATTTGATACCAAAATGAAACTTGTTCTGAACACTTCCTTTCATGTTTAGGTACCGTCCTATAAATTACTGATA
TATAATGTATTGAAGCAACGTACCTTTCGTAATCAGTAGCAAGTGGCCACTCTTGCTGTCATCAACATATGATCATCATG
CTTCATCTTATATTGTGGTGGCAAAAATTGTCAGTCAGAGGTATACATTTATTTGTTCATCGAGAAGTAAATGTCAATCG
AATAATACAGATTGGAAGTAGCACATCACATATAAAATGAAGTGAATAAACCTTAGCTTTGATTTTTGAATTATTCCCAG
TTGTCCTTTCACTCTTACAGGGCTAGAGGAATTATCATAGCAATTTCTTCACATGGCACACTGAACGCTTTGGAGCGCAT
GCAACTTAAGCAAGACCATGCACCATGTATTGATTATTTTCT
>chr1D_1
CGTGTTTTGCAAGTAGTGACAATATGTATGAATTTGCGACTTGCGTGTGACGTCTACTAGGATAATACATTCGACTTGTG
TGTGACAATATGTGGACTATCCCTAATTATGC--ATATAT--GTGTGGACTAGATCAAATTATGCCTATATATGATCAAA
CTATGCCTATATATGTGTGGACTAGATCAAATTATGCCTATATATGATCAAATTGCACTGTAGTTGTTTTTATCTGCAGG
GATCAGAAAAGAAATAGCTTG-ACAGCAGAATGAACGGGAAAGATTTCCGAGAGCAACACTCGGAAAACGATATACTACC
GAGAGCTCCTCTCGGAAACGTGGTCGTCTGG--GAGGCACTACTGTTGTGCCACAACTTTTCCGAGAGCAGCTCTCGGAA
AAGAAGGAGAGCGTTGCCGAGT-TATCTCTCGGCAAAGCTATGTAAACTGTCAG-CTCCCATGTGGGCCACGCTGTCCTA
CTGGTCAGAAGGATTGCCGAGAGCTGCTCTCGGCAAAGATATCGTCATTT-TTTTT-CAAAAATATTTAGCAAGTTATTT
A-AAACTTGTACTGATA-----AATGTGACCAGTGGGACCACATGTCAGTTAGAAAGAACACA--CAAA-----------
AAAAT----AGGATGTTGCATATGCTTTGCCGAGAGTGACA--------CTCGACAAAGTACGCAGTAACTGACGGAGCC
ATCTGTTGCGGACGGGCATGCCACGTGGCTCCTCTTTGCCGTGAGCGGCTCTCGGCGTCTGCAGGGTTTGCCGTGCGGTG
CCTCTTTGCCGTGAGGCAGTGACGGCAAAGATGACAGTTTGCCGTGAAG---ATGGGTTTGCCGAGAGTGAC-ACTCGGC
AAAG----------------------------------------------------------------------------
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>chr1D_1
CGTGTTTTGCAAGTAGTGACAATATGTATGAATTTGCGACTTGTGTGTGACGTCTACTAGGATAATACATTCGACTTGTG
TGTGACAATATGTGGACTAGCCCTAATTATGCCTATATAT--GTGTGGACTAGATCAAATTATGCCTATATATGATCAAA
TTATGCCTATATATGCGTGGACTAGATCAAATTATGCCTATATATGATCAAATTGCACTGCAGTTGTTTTTATCTGCAGG
GATCAGAAAAGAAATAGCTTA-ACAGCAGAATGGATGGGAAAGATTTCCGAGAGCAACACTCGGAAAACGATATACTACC
GAGAGCTCCTCTCGGAAACATGGTCGTCTGG--GA--CACTACTGTTGTGCCACAACTTTTCCGAGAGCAGCTCTCGGAA
AAGAAGGCGAGCATTGCCGAGCATAGCTCTCGGCAAAGCTAGGTAAAGTGTCAG-CCCCCATGTGGGCCACGCTGTCGTA
CTGGTCAGAAGGATTGCCGAGAGCAGCTCTCGGCAAAGATATCGTCA-TT-TTTTT-CAAAAATATTTAGCAAGTTATTT
A-AAACTTTTACTGATA-----AATGTGACCAGTGGGACCACATGTCAGTTAGAAAGAACACACACAAA-----------
AAAA------GGATGTTGCATATGATTTGCCGAGGGTGACG--------CTCGGCAAAGTACGCAGTAACTGACGGAGCC
GTCTGTTGCGGACGAGCATGCCACGTGGCTCCTCTTTGCCGTGAGCGGCTCTCGGCGTCTGCAAC-TTTGTCGTGCGGTG
CCTCTTTGCCGTGAGGCAGTGGCGGCAAAGATGTCAGTTTGCCGTGACG---GTGGGTTTGCCGAGAGTGAC-ACTCGGC
AAA-----------------------------------------------------------------------------
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>chr2A_1
CGTGTTTTGCAAGTAGTGACAATATGTATGAATTTGCGACTTGTGTGTGACGTCTACTAGGATAATACATTCGACTTGTG
TGTGACAATATATGGACTATCCCTAATTATGCCTATATGT--GTGTGGACTAGACCAA---ATGCCTATATATGATCAAA
TTATGCCTATATATGTGTGGACTAGATCAAATTATGCCTATATATGATCAAATTGTACTGTAGTTGTTTTTATCTGTAGG
GATCGGAAAAGAAATAGCTTG-ACAGCAGAATGGATGGGAAAGATTTCCGAGAGCAACACTCGGAAAACGATATACTACC
GAGAGCTCCTCTCGGAAACATGGTCGTCTGG--GA--CACTACTGTTGTGCCACAACTTTTCCGAGAGCAGCTCTTGGAA
AAGAAGGCGAGCATTGCCGAGACTAGCTCTCGGCAAAGCTATGTAAACTGTCAG-CCCCCATGTGGGCCACGCTGTCGTA
CTGGTCAGAAGGATTGCCGAGAGCCGCTCTCGGCAAAGATATCGTCA-TT-TTTTT-CAAAAATATTTAGCAAGTTATTT
A-AAACTTTTACTGATA-----AATGTGACCAGTGGGACCACATGTCAGTTAGAAAGAACACACACAAA-----------
AAAAT----AGGATGTTGCATATGTTTTGCCGAGAGTGACA--------CTCGGCAAAGTACGCAGTAACTGACGGAGCC
ATCTGTTGCGGACGGGCATGCCACGTGGCTCCTCTTTGCCGTGAGCGGCTCTCGGCGTCTGCAGGATTTGCCGTGCGGTG
CCTCTTTGCCGTGAGGCAGTGACGGCAAAGATGGCAGTTTGCCGTGAAG---GTGGGTTTGCCGAGAGTGAC-ACTCGGC
AAAG----------------------------------------------------------------------------
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>chr6D_1
CGTGTTTTGCAAGTAGTGACAATATGTATGAATTTGCGACTTGTGTGTGACGTCTACTAGGATAATACATTCGACTTGTG
TGTGACAATATGTGGACTATCCCTAATTATGCCTATATAT--GTGTGGACTAGATCAAATTATGCCTATATATGATGAAA
TTATGCCTATATATGTGTGGACTAGATCAAATTATGCCTATATATGATCAAATTGCACTGTAGTTGTTTTTATCTGCAGG
GATCAGAAAAGAAATAGCTTG-ACAGCAGAATGGATGGGAAAGATTTCCGAGAGCAACACTCGGAAAACGATATACTACC
GAGAGCACCTCTCGGAAACATGATCGTCTGG--GA--CACTACTGTTGTGCCACAACTTTTCCGAGAGCTGCTCTCGGAA
AAGAAGGCGAGCATTGCCGAGAATAGCTCTCGGCAAAGCTATGTAAACTGTCAG--CCCCATGTGGGCCACGCTGTCGTA
CTGGTCAGAAGGATTACCGAGAGCCGCTCTCGGCAAAGTTATCGTCA--T-TTTTT-CAAAAATATTTAGCAAGTTATTT
A-AAGCTTTTACTGATA-----AATGTGACCAGTGGGACCACATGTCAGTTAGAAAGAACACACGC-AA-----------
AAAAA----AGGATGTTGCATATGCTTTGCCGAGAGTGACA--------CTCGGCAAAGTACGCAGTAACTGACGGAGCC
GTCTGCTGCGGACGGGCATGCCACGTGGCTCCTCTTTGCCGTGAGCGGCTCTCGGCGTCTGCAGGGTTTGCCGTGCGGTG
CCTCTTTGCCATGAGGCAGTGACGGCAAAGATGGCAGTTTGCCGTCAAG---ATGGGTTTGCCGAGAGTGAC--------
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>chr7B_1
CGTGTTTTGCAAGTAGTGACAATATGTATGAATTTGCAACTTGTGTGTGACGTCTACTAGGATACTACATTCGACTTGTG
TGTGACAATATGTGGACTATCCCTAATTATGC--ATATAT--ATGTGGACTAGATCAAATTATGCCTATATATGATCAAA
TTATGCCTATATATGTGTGGACTAGATCAAATTATGCCTATATATAATCAAATTGCACTGTAGTTGTTTTTATCTGCAGG
GATCAGAAAAGAAATAGCTTG-ACAGCAGAATGGATGGGAAAGATTTCCGAGGGCAACACTCAGAAAACGATAGACTACC
GAGAGCACCTCTCGGAAACATGGTCGTCTGG--GA--CACTACTGTTGTGCCACAACTTTTCCGAGAGCAGCTCTCGGAA
AAGAAGGAGAGCATTGCCGAGACTAGCTCTCGGCAAAGCTATGTAAACTGTCAG-CTCCCATGTGGGCCACGCTGTCCTA
CTGGTCAGAAGGATTGCCGAGAGCTGCTCTCAGCAAAGATATCGTTATTT-TTTTT-CAAAAATATTTAGCAAGTTATTT
A-AAAAAATTACTGATA-----AATGTGACCGCTGGGACCACATGTCAGTTAGAAAGAACACATAC-AA-----------
AAAAAATATAGGATGTTGCATATGCTTTGCCGAGAGTGACA--------CTCGGCAAAGTACGCAGTAACTGACGGAGCC
GTCTGTTGCGGACGGGCATGCCACGTGGCTCCTCTTTGCCGTGAGCGGCTCTCGGCGTCTGCAGGGTTTGCCGTGCGGTG
CCTCTTTGCCGTGAGGCAGTGACGACAAAGATGGCAGTTTGCCGTGAAG---GTGGGTTTGCCGAGAGTGAC-ACTCG--
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>chr7D_1
CGTGTTTTGCAAGTAGTGACAATATGTATGAATTTGCGACTTGTGTGTGACGTCTACTAGGATAATACATTCGACTTGTG
TGTGACAATATGTGGACTATCCCTAATTATGC--CTATATATGTGTGGACTAGATCAAATTATGCCTATATATGATCAAA
TTATGCCTATATATGTGTGGACTAGATCAAATTATGCCTATATATGATCAAATTGCACTGTAGTTGTTTTTATCTGCAGG
GATCAGAAAAGAAATAGCTTG-ACAGCAGAATGTATGGGAAAGATTTCCGAGAGCAACACTCGGAAAACGATATACTACC
GAGAGCACCTCTCAGAAACATGGTCGTCTGG--GA--TACTACTGTTGTGCAACAACTTTTCCGAGAGCAGCTCTCGGAA
AAGAAGGCGAGCATTGCCGAGACTAGCTCTCGGCA----TATGTAAACTGTCAGCCCCCCATGTGGGCCACGCTGTCATA
CTGGTCAGAAGGATTACCGAGAGCCGCTCTCGGCAAAGATATCGTCA-TTCTTTTT-CAAAAATATTTAGCAAGTTATTT
A-AAACTTTTACTGATA-----AATGTGACCAGTGGGACCACATGTCAGTTAGAAAGAACACA--C-AA-----------
AAAAT----AGGATGTTGCATATGCTTTGCCGAGAGTGACA--------CTCGGCAAAGTACGCAGTAACTGATGGAGCC
GTCTATTGCGGACGGGCATGCCACGTGGCTCCTCTTTGTCGTGAGCGGCTCTCGGCGTCTGCAGGGTTTGCCGTGCGGTG
CCTCTTTGTCGTGAGGTAGTGACGGCAAAGATGGCAGTTTGCCGTGAAG---GTGGGTTTGCCGAGAGTGAC-ACTCGGC
AAAG----------------------------------------------------------------------------
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>chrUn_1
CGTGTTTTGCAAGTAGTGACAATATGTATGAATTTGCGACTTGTGTGTGATGTCTACTAGGATAATACATTCGACTTGTG
TGTGACAATATGTGGACTATCCCTAATTATGC--CTATATATGTGTGGACTAGATCAAATTATGCCTATATATGATCAAA
TGATGCCTATATATGTGTGGACTAGATCAAATTATGCCTATATATGATCAAATTGCACTGTAGTTGTTTTTATCAGCAGA
GATCAGAAAAGAAATAGCTTG-ATAGCAGAATGGATGGGAAAGATTTCCGAGGGCAACACTCGGAAAACGATATACTACC
AAGAGCTCCTCTCGGAAACATGGTCGTCTGG--GA--CACTACTGTTGTGCCACAACTTTTCCGAGAGCAGCTCTCGGAA
AAGAAGGCGAGCATTGCCGAGACTAGCTTTCGGCAAAGCTATGTAAGCTGTCAG-CCCCCATGTGGGCCACGCTGTCGTA
CTGGTCAGAAGGATTGCCGAGAGCCGCTCTCGGCAAAGATATCGTCA-TT--TTTT-CAAAAATATTTAGCAAGTTATTT
AAAAACTTTTACTGATA-----AATGTGACCAGTGGGACCACATGTCCGTTAGAAAGAACACACAGACA-----------
AAAAA----AGGATGTTGCATATCCTTTGCCGAGATTGACA--------CTCGGCAAAGTACGCAGTAACTGACGGAGCC
GTCTGTTGCGGACGGGCATGCCACGTGGCTCCTCTTTGCCGTGAGCGGCTCTCGGCGTCTGCAGGGTTTGTCGTGCAGTG
CCTCTTTGCCATGAGGCAGTGACGGCAAAGATGACAGTTTGCCGTGAAG---GTGGGTTTGCCGAGAGTGAC-ACTCGGC
AAAG----------------------------------------------------------------------------
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>chr5B_1
CGTGTTTTGCAAGTAGTAACAATATGTATGAATTTGCGACTTGTGTGTGACGTCTACTAGGATAATATATTCGACTTGTG
TGTGATAATATGTGAACTATCCCTAATTATG-----ATATATATGTGGACTGGATCAAATTATGTCTATATATGATCAAA
TTATGCCTATATATGTGTGGACTAGATCAAATTATGCCTATATATGATCAAATTGCACTGTAGTTGTTTTTATCTTCAGG
GATCAGAAAAGAAATAGCTTG-ACAGCAGAATGGATGAGAAAGATTTCCGAGAGCAACACTCGGAAAATAATATACTACC
GAGAGCACCTCTCGGAAACATGGTCGTCTGG--GA--CACTACTGTTGTGCCACAACTTTTCCGAGAGCAGCTCTCGGAA
AAGAAGGCGAGCATTGCCGAGACTAGCTCTCGGCCAAGCTATGTAAACTGTCAG-CCCCCATGTGGGCCACGCCGTCGTA
CTGGTCAGAAGGATTACCGAGAGCCGCTCTCGGCAAATATATCACCA-TT-TTTTT-CAAAAATGTTTAGCAAGTTATTT
A-AAACTTTTACTGACAAATATAATGTGACCAGTGGGACCACATGTCCATTAAAAAGAACACACACAAA-----------
AAAAT----AGGATGTTGCATATGCTTTGCCGAGAGTGACA--------CTCGGCAAAGTACGCAGTAACTGACGGAGCC
GTCTATTGCGGACAGGCATGCCACGTGGCTCCTCTTTGCCCTGAGCGGCTTTCGGCGTCTGCAGGGTTTGCCGTGCAGTG
CCTCTTTGCCGTGAGGCAGTGACGGCAAAGATGGCAGTTTGCCGTGAAG---GTGGGTTTGCCGAGAGTGAC-ACTCG--
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>chr3D_1
CGTGTTTTGCAAGTAGTGACAATATGTATGAATTTGCGACTTGTGTGTGACGTCTACTAGGATAATACATTCGACTTGTG
TGTGACAATATGTGGACTATCCCTAATTATGC--ATATATAT--GTGGACTA---------------------GATCAAA
TTATGCCTATATATGTGTGGACTAGATCAAATTATGCCTATATATGATCAAATTGCACTGTAGTTGTTTTTATTTGCAGG
GATTAGAAAAGAAATAGCTTG-ACAGCAGAATGGATGGGAAAGATTTCCGAGAGCAACACTCGGAAAACGATATACTACC
GAGAGCTCCTCTCGGAAACATGGTCGTCTGGGAGA--CACTACTGTTGTGCCACAACTTTTCCGAGAGCAGCTCTCGGAA
AAGAAGGAGAGCATTGCCGAGACTAGATCTCGGCAAAGCTATGTAAACTGTCAG-CTCCCATATGGGCCATGCTGTCCTA
CTGGTCAGAAGGATTGCCGAGAGCAGCTCTCGGCAAAGATATCGTCA-TT-TTTTT-CAAAAATATTTAGCAAGTTATTT
A-AAACTTTTATTGATC-----AATGTGACCAGTGGGACCACATGTCAGTTAGAAAGAACACACACAAA-----------
AAAAT----AGGATGTTGCATATGCTTTGCCGAGAGTGACA--------CTTGGCAAAGTACGCAGTAACTGACGGAGCC
GTCTGTTGCGGACGGGCATGCCACGTGGCTCCTCTTTGCCATGAGCGGCTCTCGGCGTCTGCAGGGTTTGCCGTGCGGTG
CCTCTTTGCCGTGAGGCAGTGACGGCAAAGATGGCAGTTTGCCGTGAAG---TTGGGTTTGCCGAGAGTGAC-ACTCGGC
AAAG----------------------------------------------------------------------------
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>chr5A_1
CGTGTTTTGCAAGCAGTGACAATATGTATGAATTTGCGACTTGTGTGTGACGTCTATTAGGATAATACATTCGACTTGTG
TGTGACAATATGTGGACTATCCCTAATTATGC--CTATATATGTGTGGACTAGATCAAATTATGCCTATATATGATCAAA
TTATGCCTATATATGTGTGGAATAGATCAAATTATGCCTATATATGATCCTTCTTCCAAGTAGTTGTTTTTATCTGCAGG
GATCAGAAAATAAATAGCTTAAACATCAGAATAGATGGGAAAGATTTCCGAGAGCAACACTCGAAAAACTACATATTACC
GAGAGCCCCTCTCGAAAACATGGTCGTCTGGGAGA--C-CTACTATTGTGCCACAACTTTTCTGAGAGCTGCTCTCGGAA
AGGAAGACGA-CATTGCTGAGACAAGCTCTCGGGAAAGCTATGTAAACTGTCAG-CTCCCATGTGGGCCACGCCGTCCTA
CTGGTCCGGAGGATTGCCGAGAGCAGCTCTCGGCAAAGATATCATCA-TT-TTTTTTCAAGAATATTTAGGAAGTTATTT
A-AAACTTTTACTGATA-----AATGTGACCAGTGGGACCACATGTCAGTTAGAAAGAACAC------ACACACAAAAAG
AAAAT----AGGATGTTGCATATGCTTTGTCGAGTGTTGTACTGCAGCTCTCGGTAAAGGATGCAGTAACTGACGGAGCC
GTCTGTTACGGACGGCCATGCCACGTGGCTCCTCTTTGCCGTGAGCGGCTCTCAGCGTCTACAGGTTTTGCCGTGCGGTG
CCTCTTTGTCGTGAGGCAATGACGGCAAAGATGGCAGTTTGCCGTGAAGCTGGTCGGTTTGCCGAGAGTGAC-ACTCGGC
AAAG----------------------------------------------------------------------------
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>chr7A_3
--TGTTTTGCAAGTAGTGACAATATGTATGAATTTGCGATTTGTGTGTGACGTCTACTAGGATAATACATTCGACTTGTG
TGTGACAATATGTGGACTATCCCTAATTATGC--CTATATATGTGTGGACTAGATCAAATTATGCCTATATATGATCAAA
TTATGCCTATATATGTGTGGATTAGATCAAATTATGCCTATATATGATCAAATTGCACTGTAGTTGTTTTTATCTGCAGG
GATCAGAAAAGAAATAGCTTG-ACAGCAGAATGGATGGGAAAGATTTCCGAGAGCAACACTCAGAAAACGATATACTACC
GAGAGCGCCTCTCGGAAACATGGTCGTTCGG--GA--CACTACTGTTGTGCCACAACTTTTCCGAGAGCAGCTCTCGGAA
AAGAAGGCGAGCATTGCCGAGACTACCTCTCGGCAAAGCTATGCAAACTGTCAG-TCCCCATGTGGGCCACGCTGTCGTA
CTGGTCAGAAGGATTGCCGAGAGCCGCTCTCGGCAAAGATATCGTCA-TT-TTTTT-CAAAAATATTTAGCAAGTTATTT
A-AAACTTTTACTGATA-----AATGTGACCAGTGGGACCACATGTCAGTTAGAAAGAACAC------A-----------
AAAAA----AGGATGTTGCATATGCTTTGCCGAGAGTGACA--------CTCGGCAAAGTACGCAGTAACTGACTGAGCC
GTCTGTTGCGGACAGGCATGCCACGTGGCTCCTCTTTGCCGTGAGCAGCTTTCGGCGTCTCCAGGGTTTGCCATGCGGTG
CCTTTTTGCCGTGAGGCAGTGACGGCAAAGATGGCAGTTTGCCGTGAAG---GTGGGTTTGCCGAGAGTGAC---TCGGC
GAAGAGTATTACACCTGGCGTACATGAAAATTCCAGTAGT----------------------------------------
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>chr3D_155
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AA
TTATGCCTATATATGTGTGGACTAGATCAAATTATGCCTATATATGATCAAATTGCACTGTAGTTGTTTTTATCAGCAGG
GATCAGAAAAGAAATAGCTTG-ACAGCAGAATGGATGGGAAAGATTTCCAAGAGCAACACCCGGAAAAGGATATACTACC
GAGAGCTCCTCTCGGAAACATGGTCGTCTGGGA----CACTACTGTTGTGCCACAACTTTTCCGCGAGCAGCTCTCGGAA
AAGAAGGCGAGCATTGCCGAGACTAGCTCTCGGCAAAGCTATGTAAAGTGTCAG-CCCCCATGTGGGCCACGCTGTCGTA
CTGGTCGGAAGGATTGCCGAGAGCAGCTCTCGACAAAGATATCGTCA-TT-TTTTT-CAAAAATATTTAGCAAGTTATTT
A-AAACTTTTACTGATA-----AATATGACCAGTGGGACCACATGTCAGTTAGAAAGAACAC------ACAC--------
AAAAA----AGGATGTTGCATATGCTTTGCCGAGAGTGACA--------CTCGGCAAAGTACACAGTAACTGACGGAGCC
GTCTGTTGCGGACGGGCATGCCACGTGGCTCCTCTTTGCCGTAAGCGGCTCTCGGTGTCTGCAAC-TTTGCCGTGCGGTG
CCTCTTTGCTGTGAGACAGTGACGGCAAAGATGGCAGTTTGCCGTGACG---GTGGGTTTACCGAGAGTGAC-ACTCGGC
AAAG----------------------------------------------------------------------------
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>chr1D_869
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------TGTTATCTTGTATTCTTGTGTGACAATGCTCGAAGAATATA
AAAGGGCTAGGTGGA-----AAGACCCCCATATCGAAAACTTGCCTACCTACGAGTTTTA-TAGACACAGAGCCTCATTG
GATTGTACTAGATGGAGCCTCCAGTGAGAGCTGAAGACGAGGCGATGAGCACGGAGGAGCTGCTCCAAGCCCAGACGGAT
CTCTACCACCACTCCCTAGCCTACATCAAATCTATGGCGCTCGGTGCCGCCACAGAACTCAGCGTCGCCGACGCCATCCA
CGGCCGTGGCGGTGCCATCACCTTGTCTGACCTTGCGGCCGCGACCGGCGTCCACCCGACGAAAGTCCAACACTTCGGGC
GGCTGATGCGCGCGCTTACCGTCACTGGTGTCTTCACCTCGGAAGAAAAAGAAGGCGGTGGTGGTGCCCTGTACAAGCTC
ACTCGGATTTCACGCCTCCTTCTCGGAGTCGGCAAGCGTCGGCTCTCCCCGATGGTGCGTATGCTTGTCAGCGAGGTCAG
TTTCACTACTCCCATGAGCATCTGCGAGTGGATCACCACTGAGACGCCGGCCAGGGCCATGTTCGAGGCCCATTTTGGCT
CTACGCAAAATGGGTTGTGGGAGAAGGACGACGCGTATGGTGCCCCCTTCTACTCAGCAATGGCTGCGGACAGCCGTCTC
GTCATGGAGGTTCTGCTGAGAGAGTGCAGCAGCGTCTTTGAGGCCGTTGCCGGCTCACTTGTCGATGTCGGCGGCGGCAG
CGGAGGAGTCGTGGCTGCCGCCATTGCCACAGCGTTCCCTCACATCAAGTGCTCCGTGCTGGACCTCCCCAACGTGGTAG
CCGCGGCTGACGACACCACCAACGTGCAGTTTGTCTCCGGCGATATGTTTGACTACATTCCACCAGCGGATGCCGTTCTA
CTCAAGGTACGTACTTACATAGTACTCCCTCCGTAAGGATATATAAGAGCATTTAGATCATTA-----------------
----------------------------------------TTATTTTAGTGATTGATCCAAACGCACTTATATTTCTTTA
CAGAGGG------------AGTAGCACATACAAATGCAGCAAGCTATCCATTTCTTATATATATAATGAACCAAATTAAT
CAACCAATCCTTCCTATAAATTTTGTAGTGGATTTTGCATGACTGGGAAGACCAAGACTGCGTCAAGATACTGCGCAAGT
GCAGAGAGGCCATCCGCACAAGAGGTGCTGGGGGGAAGGTGATTATAATCGATTTCGTCGTCGGTGCTGGTTCTTGCAAG
GAGACGGAGACACAGGTTCTGTTTGATCTTTACATGATGATGGAGAATGGGGCTGAGCGGGACGAGCAAGAGTGGAGCAA
GATTTTCTTTGAAGCTGGATTTAGTGACTACAAGATCATGCCAGTCTTAGGCGCTCGTTCACTCATTCAAGTATTCCCAT
GAATTCTGGCGGTTTGATGTCCAAATGTACTTCCTGTTTCCAAATGTTTGTTTGCTTTCACATCAGAATAATGCCTAGGA
CTATACTATATAGTCTCGACTTTGAATCTGAATAATGAAACTGTTTGTTATCCTACGTGTTGTTTTCGTTCATAATTCAT
ATGCTCACAATGAAATACAGTCTGCTATTTTTGTTTACATTAAATTATACTTTACCTAGCAATATGGTAAACAGGCTCAC
TTAGCAGAGGCTGGCTTGTTCGCTTATTCGCCGCCCTAGGAATGCGAGCTCCTTGCCGA----------AATGAAATTCT
AGTAGCACTGGTTACTATCGGGTC-CTGCATGTTCGTCATTTGTGCAAGTAAACACAATGCATACGAGTACTCTACTGAA
TTGAACTTTTTTGTATTGTTTTCATTGGACCATCCACTGTATAGTAACA-------------------------------
--------------------------------------------------------------------------------
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------------------------------------------
>SNPs
--------------S---------------------S----------------------------------S--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------S---------S-----------------------------------------------------------
-------------------------------------------------------------S------------------
--------S-------------S---------------------------S------------S------------S---
-----S--------------------------------------------S-----------------------------
-----------------------------------------------------------------S--------------
--S--------------S-----------------------------------------------------S--------
-----------------------------------------------------------------------------S--
-------S---------S-----------S------------------S-----------------------S-------
------SS-------S---------------------------S-----------------------S---S-S------
--------------SSSSSS--------------S----S------SS---------S--S-----S--------S----
--------------------S-S---------------------------------------------------------
-----------------------------S-----------S------------------S-------------------
----------------------------S---------------------------------------------------
-------------------------------------------S------------------------------------
---------------------S----------------------------------------------------------
------S-----------------------------------S-------------------------------------
----------------------------S---------------------------------S--------------S--
-----------------------------------------------S--------------------------------
---S--------------------S-------------------------------------------------------
-S-----S----------S------------S------------------------------------------------
----------S--SS-------------------SSSS-S---S-SS--SSSSSSSSSS-S--SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S-S--SS-S-S-SS-S---SSS-S-S--S---S--SS
S-SS-S-SSSSSSSSSSSS-----S-------------------------------S------S--------------S-
--------------S-------------------S---------------------------------------------
--------------SS-----------------------------------------------------------S----
--------------------------------------------------------------------S-----------
------------------------S-------------------------------------------------------
------S--S-----SS-----------------SS--------------S--------SS---S---------------
--------------------------S----------------------------S-----------S------------
-------S---S-----S--S-----------------------S----S------------------------------
-----S--------------------------------------S-----------S--SSSSSSSSSS-----------
--SS------------------SSS--S------------S----------S--S----S--------------------
--S----S---S---S----------------S-----------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1018
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--------------------------------------AGTTGCCTGGCTACGAGTTG----------------------
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>reverse_2724
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---GGCACTGGTTACTATCGGGG---------------------------------------------------------
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------------------------------------------
