>input_sequence_53861
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-------------------------------------ATGAATCTCCCGACGATCGCCTGCGCCCTCATCCTACTTCTCC
ATCTCAATGGTTCGTGCGCGCGTCCTGCCCTGACTAGATGCTTATCAGCTCGCCAGATTAGATTGTTCGTCAGCACACAC
TTTTTTCTTAATTTCTACACGTCGTAATTGGT-----CGCTGTTCATGTTTCGTTTTGCCGCCTAAATTGATCGATCTGC
CC--GCGTGCAGTTTCTCCCGTGGAGTCGTCCCGGCCGCAGCCAGAGGGGCTCGGGAAGGGGCGC---------------
------CACCACGGCCATAACGGGCACAGCGGCGACGACGGGCACCAACACCATCACTCTGACGGCTACAACGGGTACAG
CTTCTACGTCTTCGGCGACTCCTTCGCCGACAACGGCAACCTCGTCAAGATGACCCCATTATCCGAGCTCAATCGCCAGT
GGCGCCCTCCATACAGGGCCAACGGCCGCTTCTCCAACAGCTTGGTTGAGTCCGACTTCATCG------GTGC----GTC
CTTCCTCAATCTCCAATTC-TCCATCTCTCCTTTGC-----CGTGTT-ATCATC-----TCCACGTGTGACT--------
CT------GTTTTACTACGTA--TGTTGCAGCCTCCATGTTAGGGCAGATGAAATCCCCTCCGGCGCACAGCCTCGCGCG
CAAGGTCGGTCCGGCCGGCTTGAACTTCGCCGCCGGCGGCTCCGGCGTGTATGACGTGCCGCACACCCACACGCTCGCCA
GGCAGATCCACACCTTCCACAAGCTCGTCAAGGACGGAGACATCGACCAAGAGCTCCTCGCGTCGAAATCCGTCGCGCTG
GTCGCCGTCTCCGGCAACGACTACGCCCGCCTCCCCTCCGACACCAAAAGCTTCGCGGAGGTGGAGGATTTCGCCAAGAA
TGTGGCGTCGGAGATCGCGGCGAACGTGCGGCGCCTAAAGGACATCGGCGTGCAGAAGGTGCTCGTCAACAACCTCTTCC
CTTTCGGGTGCGCCCCGTCGGAGACCAGGGCGTACAACCACACCCGCTGCAACGAGCGGCGCAACCTGGCCGCCATGCTC
CACAACCACCACCTTGCCAACAAGCTGGCCGACATGGAGGACGTGCTGGTGGTCGACCTGAACGCTGCCTTCAGCACGGT
CCTCCGGGACGACGGGAGCGGTGA------------CACCGCCAATCTATTCAGGGAGAAGCTGGTGCCGTGTTGCGAGA
GCACGGACCCCAAGGGGTACTGCGGGCAGGTAGACCCGGAGACGTTGGATCCGCTCTACGACGTGTGCGACGAACCCCAC
GTGTTCTTCTTTTGGGACGAGATGAACCCGACCATGGTCGGGTGGCAGGCCGTCATGGGCCCGCTCGACTTCCCCATCAG
AAAGTTCCTAGGCCTCGTTAAGTAG-------------------------------------------------------
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-------------------------------------------------------------------------
>chr5D_1_TraesCS5D01G443000
GTCTCTCAAATTTGTAGGGCTCAAACTTCCTGTGTTGATGGAAGTAATCGCCGATCCTCTTCAAAAATGTTGTTCCTTTT
TGTTCGGCACCGGTTTTGGGATATTGTCCAACTAACACCCAAGCTTCGCAAATCAACTTGTCTTCCGTCTTCGTGTATGC
TCTCGTCCTCATGCTTTTCATTCTC-TTTTGTGACCGGCCCTGTTCCACAAGCTCTTCCTCAAACAACAATGGCTCCCCG
TCGAAGTCGACGCCCTCTTCGCCATCATCTTGGTCATCATTGTATTGGTCGTTGTCTTGGCTGTG---------------
----------------GGCGTCTTGAGTCTCATCGTCATCATACCCTTGGCTACCCCTCATTG-----------------
---TAGTACTTCGGACTGGCCGGCGTCGGGGTGGGTGTTTCATCGAATAAGTTGCGGCCATCAGGTAAGTTGGCTGGAGA
GACCACCCGCTGGTGCTTTCTTTGCATCCCGGTGGAATGGACAGCCACAGGTATGAAAATATTTAGCCTGTAGTACGCGA
GCACCTCCAAGGCACTAGAGCACATGCTGGCCCG----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------GAGGAAGGCCAGTACATAGTCACCTAGGGAATGACG
TTGGTGTGCCATAGATGCACAGGCCAGGGGGGAGGGCGTCT--------GTGGGCGTCCGACGTATCAGCGTGAACGTAA
ACTCGGCCCAAACTTTGGCCAAAATGGATTGAGGCGGGAAAAAAAATA--GACATCCGTCTATTTGCGTCGTCATGTTGG
CCCGTGTTTTTTATTCACATGGACCCAAACAAACGCGAACGGACGAGCTGCATGTTGGAGTTGACCTAACAAGTTGCAAA
TGATCGATCAGTTTGTTGTGATCGCACCGCATCACGACGACGTACCACCGCATG--GGTCTAGGATTTTTCCCTGTCCCT
ATCTAAAACTCGCCTGATCCTCTGATCCTCTCCACCCATAGATCTCC---GCTCGCTCGTCCCCCACAGCACCACGTACG
TACGCATCACGCCGGCCAGTTCAGCCGATCGAGCGGGATGAATCTCCCGACGATCGCCTGCGCCCTCATCCTACTTCTCC
ATCTCAATGGTTCGTGCGCGCGTCCTGCCCTGACTAGATGCTTATCAGCTCGCCAGATTAGATTGTTCGTCAGCACACAC
TTTTTTCTTAATTTCTACACGTCGTAATTGGT-----CGCTGTTCATGTTTCGTTTTGCCGCCTAAATTGATCGATCTGC
CC--GCGTGCAGTTTCTCCCGTGGAGTCGTCCCGGCCGCAGCCAGAGGGGCTCGGGAAGGGGCGC---------------
------CACCACGGCCATAACGGGCACAGCGGCGACGACGGGCACCAACACCATCACTCTGACGGCTACAACGGGTACAG
CTTCTACGTCTTCGGCGACTCCTTCGCCGACAACGGCAACCTCGTCAAGATGACCCCATTATCCGAGCTCAATCGCCAGT
GGCGCCCTCCATACAGGGCCAACGGCCGCTTCTCCAACAGCTTGGTTGAGTCCGACTTCATCG------GTGC----GTC
CTTCCTCAATCTCCAATTC-TCCATCTCTCCTTTGC-----CGTGTT-ATCATC-----TCCACGTGTGACT--------
CT------GTTTTACTACGTA--TGTTGCAGCCTCCATGTTAGGGCAGATGAAATCCCCTCCGGCGCACAGCCTCGCGCG
CAAGGTCGGTCCGGCCGGCTTGAACTTCGCCGCCGGCGGCTCCGGCGTGTATGACGTGCCGCACACCCACACGCTCGCCA
GGCAGATCCACACCTTCCACAAGCTCGTCAAGGACGGAGACATCGACCAAGAGCTCCTCGCGTCGAAATCCGTCGCGCTG
GTCGCCGTCTCCGGCAACGACTACGCCCGCCTCCCCTCCGACACCAAAAGCTTCGCGGAGGTGGAGGATTTCGCCAAGAA
TGTGGCGTCGGAGATCGCGGCGAACGTGCGGCGCCTAAAGGACATCGGCGTGCAGAAGGTGCTCGTCAACAACCTCTTCC
CTTTCGGGTGCGCCCCGTCGGAGACCAGGGCGTACAACCACACCCGCTGCAACGAGCGGCGCAACCTGGCCGCCATGCTC
CACAACCACCACCTTGCCAACAAGCTGGCCGACATGGAGGACGTGCTGGTGGTCGACCTGAACGCTGCCTTCAGCACGGT
CCTCCGGGACGACGGGAGCGGTGA------------CACCGCCAATCTATTCAGGGAGAAGCTGGTGCCGTGTTGCGAGA
GCACGGACCCCAAGGGGTACTGCGGGCAGGTAGACCCGGAGACGTTGGATCCGCTCTACGACGTGTGCGACGAACCCCAC
GTGTTCTTCTTTTGGGACGAGATGAACCCGACCATGGTCGGGTGGCAGGCCGTCATGGGCCCGCTCGACTTCCCCATCAG
AAAGTTCCTAGGCCTCGTTAAGTAGATGATGCATCCG-------CGTGTGCATGTATACCCTGTGCTTCACCTTGAACTA
TTATCTTAGCGCTGATAGGCAAAAATCTGATATGGAACCTATTATCATATCTTATTCTAGATAGA-TGTATTCTGCAGTT
GTTTCTACTATAGTTTTGAATATTTGAATTGTTGTGTTGTGTTCTGAAACCGAATATCAAGTGGTTTTGTTATAGGCAAA
TTTTACAACAAAGAACCAGCAATTTGCTAGCTAGGTTGGTTTGTGCGCCACTGGAAACTATGTGCAACCTGCTTTATTTC
TGAACAAATATAATCAAGTTCCGAAAGAGAGAAAAATCGGTATGATACCAAATTCCTTAGCGTTTCGGTGATTAGGGTTG
TTATTTGACTTTCTTGGCTAATATGTGGTGGAGGTATGGGCATGCCAGGCGCTGGGCAACCAATCTGTGTGGTGCGGCGC
ATCCAGAGTGTGGGGCGGCTATACCGTAAGGATTATGAGTGGTTGAAGATCGTGGCGGTTCGGTTATACTTCGGTATGTG
GCGAGTGAATTGCAAAAAACCACAACATTGACGCATAGGTTTGCAGAAAGCATTGGTTTACGAATTTGTGCCAGAAACCA
CTGATTTTTTACCTAATCTTTTGCAGAAAACACTGATTGATGAATTAGACCGTTTTAATGACAGTTATGACATGTGGGCC
TGTCATTTGATGACTGTTCTTTTTCCAAAAAAGACCTCCCTCCCAAAAACAACTCTCCCTCCCCACCTCCGTCCAGAGAG
AAGAGGAGGTGCACCCTCGACGTCGGTGAGGTCCAACCGCTGCCGCAAGTCCTCTCCCTTGTGGTCGTCGGGATCCAGGG
CCTGCACCGGAGCAAGTAGAAGCGGCGGCGCAGCACGGGCGTGAGCAACGACGCGGAGCACCGGAGCAAGCAGCGGCACG
ACGGCGCGCGAGCGGCAGCAACGGAGCAAGCAGCAACAACGTGGCAGCCCGGAAGCAGCAGCACTGACGCGGC
>chr5A_3
--CTCTCAAATTTGTATGGCTCAAACTCCCTATGTTCATGGAAGTAATCGCCAACCCTTTTCCAGAATGTTGTTCCTTTT
TGCTTGGCGCCGGTTTTGCGATATTGTCCAATTGCCACCCAAGTTTCGCAAATCAACTTGTCCTCTGTCTTTGTGTATGA
TCCTGTCCTCACGCTTTTCCTTCTCATTTTGTGACCGGCCCTGCTCCACAAGCTCTTCCTCAAACAACAATGGCTCCCCA
TCGAAGTCGACGCCCCCTTCGCCATTGTCTTGGCCATCATTGTATTGGCCGTTGTCTTTGGCCGTGGGCATCTTGGCCGG
TGGCATCTTGGCTGGTGGCATCTTGAGTCTCGTCGTCATCATACCCTTGGCCACCCTCATTGATCATCCCCTTGATATCC
TCATAGTACCTCCGACTGGCCGGCGCCAAGGTCGGTGTTTCATCAAGTAAGTTTCGGCCATCGGGTAAGTTGGCTAGAGA
GACCACCCGCGGGTGCTTCCTTCACATCCCGATGGACTCGCCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATGGGGAAGTCCAACATGTAGTCACCCATGGAATGACG
TTGGTGTGCCATAGATGGACGGGCCAGGGGAGAACAAAGGGAGGGTATCGTGGGCGTCCGGCGTGTCAGCGCAAACATAA
ACTAGA-CCAAAATTGGGCCAAAATGGATTGAGGCGGATAAAAAAAAGAGGACATCCATCCGTTTGTACCGTCGCGTTGG
CCCGTGTTTTTTGTCCATGTGGACCTAAACGAACGCAAACGTAGCAGATGCGTGT----------------------AAA
TGATCTATCAGTTTGTTGTGATCGCACGGCATCACGA-CGTACCA-ACCGCATG--GATCTAGGATTTTCACTGTAAA--
---TAAAACTCACCTGATCCTCT------------CCAGGCATCTCG---CCTCGCTCCTCCTCCACAGCACCACGTACG
TGCCCATCACGCCGGCCAGTTGGACCGATCGAGCAGGATGAATCTCCCGGCGATTGCCTGCGCCCTCCTCCTACTTCTCC
ATCTCAATGGTTGG-----------TGCCCTGATTACATGCTTATGAGCTTGC-----TAGATTGTTCGTTAGCACACAC
TTTATTCTTAATTTCTACACGTTGTAATT---------------------------TGCCGCTTAAATAGATCGATC---
---TGCGTGCAGTTTCTCTCGTGGAGTCGTCCCGGCCGCAGCCACAGGGGCTCGGGAAGGGGCGC---------------
------CACCACGACCATAACGGGCACAGCGGCGACGACAGGCACCGACACCATCACTCCGACGACTACAACGGCTACAG
CTTCTACGTGTTCGGTGACTCCTTCGCCGACAACGGCAACCTCGTCAAGATGAACCCTAGGTCCGAACTGAATCGCCAGT
GGCGCCCTCCATACAGGGCCAACGGCCGCTTCTCCAACAGCATGGTTGAACCCGACTTCATCG------GTGC----GTC
CTTCCTCAGCCTCGAATTC-TCCATCTCTATTTTGCATTGCCGTGTTCATCATC-----TCCACGGACTGACGTGTAACC
TCTGTTTGGTTTTACTACGTA--TGTTGCAGCCTCCATGTTAGGGCAGATGAAATCCCCTCCGGCGCACAGCCTCACGCG
CAAGGTCGGCCCGGATGGCCTGAACTTTGCCACCGGCGGCTCCGGCGTGTATGACGTGCCGCACACCCGCACGCTCGCCA
GGCAGATCCACACCTTCCACAAGCTCGTCAAGGACGGAGACATCCACCAAGAGCTTCTGGCATCAAAATCTGTCGCGCTC
GTCGCCATCTCTGGCAACGACTACGCCCGCCTCCCCGCCGACACCAAAAGCTTCGCCGAGGTGGATGATTTCGCCAACAA
TGTGGCCGAGGAGATCGCGGCCAACGTGCGGCGCCTGCAGGACATCGGCGTGCAGAAGGTGCTCGTCAACAACCTCTTCC
CTTTCGGGTGCGCGCCGTCGCAGACCAGGGAGTACAATCACACCCGCTGCAACGAGCGGCGCAGCCTGGCCGCCACGCTC
CACAACCACCACCTTGTCAACAAGCTGGCCGACATGGAGGACGTGCTGGTGGTCGACCTCAACGCCGCCTTCAGCACGGT
CCTCCGAGACGACGGGGGCACTGA------------CATTGCCAATCTCTTCAGGGAGAAGCTGGTGCCCTGTTGCGAGA
GCACGGACCCCAAGGGATACTGCGGGCAGGTAGACCCGGAGACGTTGGATCCGCTCTACGATGTGTGCGACGAACCCCAC
GTGTTCTTCTTTTGGGACGAGATGAACCCGACCATGGTCGGGTGGCAGGCCGTCATGGGCCCGCTCGACTTCCCCATCAG
AAAGTTCCTAGGCCTCGTTAAGTAGATGATGCATCCG-------CGTGTGCATGTATACCCTGTGCTTCACCTTGAACTA
T-ATCTTAGTATTGACTAGCAAAAA-------------------------------------------------------
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-------------------------------------------------------------------------
>chr5B_796
AACAACTTGCGA--------------------------------------------------------------------
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-----------------------------------------------------------------------------AAA
TGATCGATCAGTTTGTTGTGATCGCCCCGCATATATCCCGTACCA-ACCGCATGTGGATCAAGGATTTTGGCT----A--
---TAAAATTCACCTGATCCTCT------------CCACGCACGCATCTCCCTCGCTCCTCCTCCAC------------G
TACACATCACGCCGGCCGGCCAGTTAGGCCGAGCAGGATGAATCTCCCGGTGATCGCCTGTGTCCTCCTCCTACTTCTCG
ATCTCAATGGT-----------------------------------------------------------------ACAC
TTGATA--TAGTTTCTAGACGTTGTAATTGGC-----AGCTGCTCATGTTACCTTCTGCTGCTAAAATCGATCGATCTGC
GCGTGCGTGCAGTTTCTCCCGTGGAGCCGTCCCGGCCGCAG------GGGCTCGCGAAGGGGCGCCACACGCCCGGAAAG
GGGAACCACCACGGCCATAGCGGGCACAGCGGCGACGACGGGCACCAACACGACCACTCCGACGACTACAACGGGTACAG
CTTCTACGTCTTCGGCGACTCCTTTGCCGACAACGGCAACCTCGTCAAGATGAACCCAAGATCCGAGCTCAATCGCCAGT
GGCGCTATCCCTATGGCTTATCCGGCCGCTTCTCCAACAGCTTGGTTCAGTCCGACCTCATCGGTACGTGCGTCTCTCTC
CTTGCTAAATCTTCCATCGATCCATCTCTGTTTAGT-----CCTGGT-AATAAC-----TGAT-GGACCGACTTGTCATT
CC------GTTGTTGTACCAC---GTTGCAGCCTACATGCTAGGGCAGAAAAAGTCCCCTCCGGCGCACAGGCTCACGCG
CAAGGTCGGCAAGGCTGGATTGAACTTCGCCGCCGGCGGCTCCGGCGTGTTTGACGCACCGGACACCCAGACGCTCGCCA
GGCAGATCCACACCTTCCACAAGCTCGTCAAGGACGGAGACATCGACCAGGACCGCCTCGCGTCCAAATCCGTCGCGCTC
GTCGCCGTCTCCGGCAACGACTACGCCCGCCTTCCCGCCGACACCAAGAGCTTCGCCGAGGTGGATGATTTCGCCAGGAA
GGTGGTGGAGGAGATCGCGTTTAACGTGCGGCGCCTGCAAGACATCGGCGTGGAGAAGGTGCTCGTCAACAACCTCCACC
CTTTCGGATGCTCGCCGTCGGAGACCAGGGCGTACAACCACACGCGCTGCAATGAGCGGCGCAACCTGGCCGCCACGCTC
CACAACCACCACCTCGCCGACGAGCTGGCCGGCATGGACGACGTGCTGCTGCTCGACCTCAACGCCGCCTTCAGCAACGT
CGTCCGGCACTACAACGATGACGGGGACGGCGACATCATTCCCAATCTCTTCAGGGAGAAGCTGGCGCCGTGCTGCGAGA
GCACCGACCCCAAGGGCTACTGCGGGCAGGTCGACACGGAGAAGTTGGAACCCCTCTACAAGGTGTGCGACAACCCCAAC
TATTTCTTCTTTTGGGACGAGATGAACCCCACCATGGTCGGGTGGCAGGCCGTCATGGGCCCGCTCGATCACCCCATCAG
GAAGTTCTTAGGGCTCATTAGGTAGACGATGATGCATCCACGTACATGTGCATGTAAACCCAGTGCTCCCCCTTGAACTA
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>chr5B_988
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------------------------CCGATCGAGCGGGATGAATCTCCCGGCGATCGCCTGCGCCCTCCTCCTACTTCTCC
ATCTCAATGGTTCGTGCGCGCGTCCTGCCCTGACTAGATGCTTATCGGCTTAGCCG----GATTGTTCGTCAGCACACAC
TTGTTTCTTAATTTCTACACGTTGTAATTGGT-----CGCTGTTCATGTTTCGTTTTGCCGCCTAAATTGATCCATCTGC
--GGGCGTGCAGTTTCTCCCGTGGCGTCGTCCCGGCCGCAGCCACAGGGGCTCGGGAAGGGGCGC---------------
------CACCACGACCATAACGGGCACAGCGGCAACGACGGGCACCAACACCATCACTCCGACGACTACAACGGGTACAG
CTTCTACGTCTTCGGCGACTCCTTCGCCGACAACGGCAACCTCGTCAAGATGAACCCATTATCCGAGCTCAATCGCCAGT
GGCGCCCTCCATACAGGGCCAACGGCCGCTTCTCCAACAGCATGGTTGAATCCGACTTCATCG------GTGC----GTC
CTTCCTCAACCTCGAATTC-TCGATCTCTCTTTTGCATTGCCGTGTT-ATCATC-----TCCACGTGTT-----------
---------TTTTACCACGTACGTGTTGCAGCCTCCATGTTAGGGCAGATGAAATCCCCTCCGGCGCACAGCCTCACGCG
CAAGGTCGGCCCGGCCGGCTTGAACTTCGCTGCCGGCGGCTCCGGTGTGTATGACGTGCCGCACACCCACACGCTCGCCA
GGCAGATCCACACCTTCCACAAGCTCGTCAAGGACGGAGACATCCACCAAGAGCGCCTCGCATCAAAATCCGTCGCGCTC
GTCGCCGTCTCCGGCAACGACTACGCCCGCCTCCCCGCCGACACCAAAAGCTTCGCCGAGGTGGACGATTTCGCCAAGAA
TGTGGCCGAGGAGATCGCGGCGAATGTGCGGCGCCTAAAGGACATCGGCATGCAGAAGGTGCTCGTCAACAACCTCTTCC
CTTTCGGCTGCGCGCCGTCGCAGACCAGGGCGTACAACCACACCCGCTGCAACGAGCGGCGCAACCTGGCCGCCACACTC
CACAACCACCACCATGCCAAGAAGCTGGCCGACATGGAGGACGTGCTGGTGGTAGACCTGAACGCCGCCTTCAGCATGGT
CCTCCGGGACGACGGGAGCGTTGA------------CATCGCCAATCTCTTTAGGGAGAAGCTTGTGCCGTGTTGCGAGA
GCACGGACCCCAAGGGGTACTGCGGGCAGGTAGACCCGGAGACGTTGGATCCGCTCTACGACGTGTGCGACGAACCCCAC
GTGTTCTTCTTTTGGGATGAGATGAACCCGACCATGGTCGGGTGGCAGGCCGTCATGGGCCCGCTCGACTTCCCCATCAG
AAAGTTCCTAGGCCTTGTTAAGTAGATGATGCATCCG-------CGTGTGCATGCATACCGTGTGCTTCACCTTGAACTA
T-ATGTTAGCGCCGATAAGCAAAAATCTGATATGGAACCTATTATCATATCTTAATCTAGATAGTGTGTATTCTGCAGTT
GTTTCTACTATAGTTTTAATATTTG--ATTGTTGTGTTGTGTTCTGAAACCGAATATCAAGTGGTTTTGTTATAGACAAA
TTTTACAACAAAGAACCAGCAATTAACTAGCTAGGTTGGTTTGTGCGCCACTAGAAACTATGTGCAACCTGCTTTATTTC
TGAACAAATATAATCAACTTCCCAAAGAGAGAAAAACCGGTATGATACCAAATTCCTTAGTGTCTCGGTGATTAGGGTTG
CTATTCGGCTTTCTTGGCTAATATGAGGTGGAGGCATGGGGATGCCAGGCATTGGGCAACCAATCTGTGTGGTTCGGCGC
ATCCGGAGTGTGGGGCGGCTATCCCTTAAGGATTCTCAGCGGTTGAAGATTGTGGTGGTTCAGT--TACTTCGGTATGTG
GC------------------------------------------------------------------------------
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>chr5D_1102
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----------------------------------------------------------TAGATTGTTCATTAG--CACAC
TTGATTCTTAGTTTCTACACGTTCTAATTGTATTGGTAGCTGCTCATGTTACGTTTTGCTGCTAAAACTGATCGATCTGC
--GTGCATGCAGTTTCTCCCGTCAAGTCGTCCCCGCCGCAA------GGGCTTGGGAAGGGACGCCACCCGCCCGGAAAG
GGGGACCACCACGGCCATAACGGGCACAGCGGCGACGACGGGCACCAGCACGACCACTCCGACGACTACAACGGGTACAG
CTTCTACGTCTTCGGCGACTCCTTCGCCGACAACGGCAACCTCGTCAAGATGAACCCAAGATCCGAGCTGAATCGCCAGT
GGCGCTATCCCTATGGCTTATCCGGCCGCTTCTCCAACAGCTTGGTTCAGTCCGACTTGATCGGTACGTGCGC----CTC
CTTACTAAATCTTCCATCGATCCATCTCTGTTTTGC-----CCCGTATATATACTTGATTGAT-GGACGGACGTGTCATA
CT------GTTGTACCACGTT--GCTTGCAGCCTACATGCTACGGCAGAAAAAGTCCCCTCCGGCGCACAGGCTCACTCG
CAAGGTCGGCCGCGCCGGCTTGAACTTCGCCGTCGGCGGCTCCGGCGTGTTCGACGTGCCGGGCACCCAGACGCTCGCCA
GGCAGATCCACACCTTCCACAAGCTCGTCAAGGACGGAGACATCGACCAAGACCGCCTCGCGTCAAAATCCGTCGCGCTC
GTCGCCGTCTCCGGCAACGACTACGCCCGCCTCCCCGCCGACACCAAGAGCTTCGCCGAGGTGGAGGATTTCGCCAAGAA
GGTGACGGCCGAGATCGCGTTCAACGTGCGCCGCCTGCAGGACATCGGCGTGGAGAAGGTGCTCGTCAACAACCTCCACC
CTTTCCGCTGCTCGCCGGCCCAGACCAGGCCGTACAACCACACCCGCTGCAACGAGCGGCGCAACCTGGCCGCCACGCTC
CACAACCACCACCTCGCCGACGAGCTGGCCGGCATGGAGGACGTGCTGCTGGTCGACCTCAACGCCGCCTTCAGCAACGT
CGTCCGGCACTACAACGACGACGGGGACGGCGACATCATTCCCAATCTCTTCAGGGAGAAGCTGGCGCCGTGCTGCGAGA
GCACCGACCCCAAGGGGTACTGCGGGCAGGTCGACACGGACAAGTTGGAGCCCCTCTACAAGGTGTGCGACAACCCCAAC
TATTTCTTCTTCTGGGACGAGATGAACCCGACCATGGTCGGGTGGCAGGCCGTCATGGGCCCGCTCGACTACCCCATCAG
GAAGTTCTTAGGGCTCATTAGGTAAATGATGATGCATCCAAGTACGTGTCCATGTATACCCTGTGCTCCTCCTTGAACTA
TTATCTTAGCGCTGCTAGGCAAAAATCTGATATGGAACCTGTT-------------------------------------
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>SNPs
SS--------------S----------S---S----S---------------S-S---S---S-S---------------
--S-S---S---------S------------S-SS--------S------------------S--S-----S-------S
--SS-------S-------S-----------------------S-----------------------------------S
---------------S---------SS------S--------------S---------S-SSSSS---------------
-------------------S-----------S-------------------S----SSSS-SS-----------------
---------S--S------------S-SS---S-----------S-S------S--------S------------S----
----------S-------S---SS-------S----S-S-S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------------------
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---------------------------------------------S-----S---SS-SS--------S-S---------
-----------------S--S---------S--SSSSSSSS-------------------S---S------SS---S---
---S-SS-----S--S---------------------SS-------SS---------S--SS----SSS----SS-----
------------S-S--SS------S----S-----S----S-SS--S---S---SSSSSSSSSSSSSSSSSSSSSS---
--------------------------------------SSSSSSSS-----------S-----------SS-SSSSSSSS
SSS--------S-----------SSSSSSSSSSSS---SSS-----S---S-------S---S-----------------
---S-----------------SSS-------------------------S-----------------S------------
--------------------------------------------------S---S-SS----------------------
----------------------S---------------------------------------------------------
S-------------------------------------------S-----------------------------------
-----------------------------------------------------------S----S---------------
-----------------------------------------------------S--------------------------
--------------------------------------------------------------------------------
------------------------------S--------------------------------------SSS--------
---------------------------------------------------------------------------S----
---------S----------------------------------------------------------------------
----------------------------------------------------------------S--------------S
------------------------------------S-------------------S-----------------------
-------S------------------------------------------------------------------------
-------------S-------------------------------------------------------------S----
-----------------------------------------------------------------S--------------
--------------------S-----------------S---------S-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------S---------S---------------
-----------------S-SSS--SSS------------------------------------------------S----
------------------------SS--------------------------S---------------------------
-----------------S----S-------------S-----------------------S--S----------------
S----S-S-----------------S--------S-----S---------SS---------------------S------
----S-----------------S--S--------S-S--S----------S----S-----S--SS--------------
--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_240
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------------------------------------------------------------CAAACAACAATGGCTCCCCG
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>reverse_2529
--------------------------------------------------------------------------------
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------------------------------------------------ATTCAGGGAGAAGCTGGTGC------------
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-------------------------------------------------------------------------
>forward_383
--------------------------------------------------------------------------------
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-------------------------------------------CCCTTGGCTACCCCTCATTG-----------------
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>reverse_2855
--------------------------------------------------------------------------------
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------------------------------------------------------TTCTAGATAGATGTATTCTGCAGTTG
T-------------------------------------------------------------------------------
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