>input_sequence_53810
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------------------ATGGCTCCGGTGAAGGTGTACGGGCTGCCCATGAACGGAAGCGTGGCGCGCGTTCTGGCATG
CCTAGAGGAAGTGGGAGCCGAGTATGAGGTCGTGGCCGTCGACCTACACACCGGCGAGCACAAGAGGCTGCCACATCTTG
CTCGTAATGTATGTTGCCGTCATGTCCCTCTTTGATTACATACACGCTATGTATCTATCTTCTTGCCTCTTTGATTATAT
AGTTGTGTTGTTGTAAGGTTAATTAGATGCATCAAGTTACATGGCTCAACACTTCGCGAAAGCTGATAGGGAT--TTCTT
TTCCTTATCTCTGTTGTTCACAGCCCTTCGGCCAGGTCCCCGCGTTCCAGGATGGAGACCTGGTCCTCTTTGGTGAGTAG
CTTGCTTGCTTAATTTGTGTGATGTTGTAGTTATAATATGATATACACTATCATTTACTATTGGTTAGCGCCGTGGTTGA
TGTCTCAATCAAGATAGCTATTTTATCAGATGATGGTAGGTTGTAAAATGCCAAAGTCATGTCTCCTTTTTCAACTAGTT
AAGCACATCCTCCAGGTCACTAGGCTAGTATATACTTCAGGAATTTTTCCTAGTTATATTGCTT-GATATTTTTATTCTT
TTTTATATAAAGATAAG--ATAATACTTCAAATAACTAGAACATCATGAGTGAAAGGGGGAAGGCCCCGTATTGTGCCAC
TGAATTATTCCAAATGTGCTATGTTTTGAAAAAAAAAGAGATAAG-AAATGCCTTGCATTGCAAAGGATTGGCTATGTGG
TAATTAA-ATTTTTTTGGCCCTTGATGCAAAAAAA-------ATAAGAACGTGAATTCATATAATGTTTTTAGAAAATCA
GATCTCTGTAACTAGTTGAATTGTTTGCATGTATAACTAGTTGATTTCTGACAGAATCACGTGCAATCTCAAAGTATATA
CTCCGGAAAGGATCATCAGATTTACTGAGGGAAAACAACCTCTCTGAGTCCGCAATGGTTGATGTGTGGCTTGACGTCGA
ATCCCAGAAATTTGACAGCGTCATGCTGCCAATCATCTTTCAAGGTCTCGTCATCCCGGTTTACATGGGTGGGACTAGCG
ATCTCAAAGTTCTTGAAGAAAACCTAGAGAAACTGAAGGAAATCATGGAAGTCTATGAGGAACGCTTGTCCAAGTACAAG
TACTTGGCAGGAGATTTCATTAGCTTAGCGGACATTAGTCATTTCCCAATGGTTCACCTATTGCATGAAACTCCCTATGC
GGCGGTGCTTGATGCATATCCACATGTGAAAGCATGGATTGCTGGCGTAATGGATCGGCCTACTGTGAAGAAGGTCATGG
GGCTTATGAAGACATTTGGTTGA---------------------------------------------------------
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>chr1A_1_TraesCS1A01G013900
TTAGCTTGACTCCCGGCTCCACTCGCTCGCTCCACTGCTGGCTCATAATAAGCCAGCTACCTTTTTTTATTTTTTTAAAG
GTTCGCTGAAACCAAAAGATATTCATGGATTTTAGAAAAAAGGATTTTTGAAACTTTGTTAATTAAGAAAACCATGATTT
TTAAAAAATATTCATATATTTCAAAATATGTTTGAAATTTAAATTTAACTTAGAAAATTTAAGGCCCCAACAACCCCATA
GCCCTCAACGCACCAGGAGGCTTCAAATCTAGGGAGCTTAGTATCTTAATTCAAATCTAGGGTGCTGCAATTATGTTTTT
TTAGCAAGATCAAATTCAAATTCAAAGAACATCCCAAACAGATTATTCTTAACTACGAGCTCACTCTTCATACAAGGCAA
GATGAGACACAAAATCTTATGCCATTGGGTGCATCCATTCTCAGATTGATGTACCTTTGTTGTTGAAAAAGTCTGACGAA
ATTAAACACATGTGGAGTATCAACTAATTAACGGTTCAGTAGCTTGGAGGTGTCACTTTTCATTTCTTCTTCTTCTTCTT
TTTTTTTGCGAGTCACTTTTCATTTCTTCATGAATAAGGTAAACTTTCAGTCACTGCAAAA-------------------
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ACTGTCAGTTTATTATAATCTAGTATATGCCAGATTCATTGTCTACTCGACAGGGCAAGCTAGGTGG-------------
-------------CAATTAAGTTGTCAACTGCTCT-------------CTCACATCCGGTAGCCTCGATCGTACTATTAA
TTAATTGTGCTTCATTGCCAAGTAAGTGTGACAATTGACCGGTGCTACCTGTGCATTACTTCGTTGCTAGGTAATGTCAA
AACCAGATGGTATGCTTCGAACTGCATGCAATGGGTTGACCACTAGTTATCTATAAAAAGCACACCTTTGGCCTTTGGGT
CAAGTATGTACACCACAAAATCCATCATTCCCAAGGATCTCCTTGTCCTTCGTCTTGGCTCCACAACATCACAACTGATA
CTAGTAAGTAAGAAAATAATGGCTCCGGTGAAGGTGTACGGGCTGCCCATGAACGGAAGCGTGGCGCGCGTTCTGGCATG
CCTAGAGGAAGTGGGAGCCGAGTATGAGGTCGTGGCCGTCGACCTACACACCGGCGAGCACAAGAGGCTGCCACATCTTG
CTCGTAATGTATGTTGCCGTCATGTCCCTCTTTGATTACATACACGCTATGTATCTATCTTCTTGCCTCTTTGATTATAT
AGTTGTGTTGTTGTAAGGTTAATTAGATGCATCAAGTTACATGGCTCAACACTTCGCGAAAGCTGATAGGGAT--TTCTT
TTCCTTATCTCTGTTGTTCACAGCCCTTCGGCCAGGTCCCCGCGTTCCAGGATGGAGACCTGGTCCTCTTTGGTGAGTAG
CTTGCTTGCTTAATTTGTGTGATGTTGTAGTTATAATATGATATACACTATCATTTACTATTGGTTAGCGCCGTGGTTGA
TGTCTCAATCAAGATAGCTATTTTATCAGATGATGGTAGGTTGTAAAATGCCAAAGTCATGTCTCCTTTTTCAACTAGTT
AAGCACATCCTCCAGGTCACTAGGCTAGTATATACTTCAGGAATTTTTCCTAGTTATATTGCTT-GATATTTTTATTCTT
TTTTATATAAAGATAAG--ATAATACTTCAAATAACTAGAACATCATGAGTGAAAGGGGGAAGGCCCCGTATTGTGCCAC
TGAATTATTCCAAATGTGCTATGTTTTGAAAAAAAAAGAGATAAG-AAATGCCTTGCATTGCAAAGGATTGGCTATGTGG
TAATTAA-ATTTTTTTGGCCCTTGATGCAAAAAAA-------ATAAGAACGTGAATTCATATAATGTTTTTAGAAAATCA
GATCTCTGTAACTAGTTGAATTGTTTGCATGTATAACTAGTTGATTTCTGACAGAATCACGTGCAATCTCAAAGTATATA
CTCCGGAAAGGATCATCAGATTTACTGAGGGAAAACAACCTCTCTGAGTCCGCAATGGTTGATGTGTGGCTTGACGTCGA
ATCCCAGAAATTTGACAGCGTCATGCTGCCAATCATCTTTCAAGGTCTCGTCATCCCGGTTTACATGGGTGGGACTAGCG
ATCTCAAAGTTCTTGAAGAAAACCTAGAGAAACTGAAGGAAATCATGGAAGTCTATGAGGAACGCTTGTCCAAGTACAAG
TACTTGGCAGGAGATTTCATTAGCTTAGCGGACATTAGTCATTTCCCAATGGTTCACCTATTGCATGAAACTCCCTATGC
GGCGGTGCTTGATGCATATCCACATGTGAAAGCATGGATTGCTGGCGTAATGGATCGGCCTACTGTGAAGAAGGTCATGG
GGCTTATGAAGACATTTGGTTGACAAATAACTATATGGTAATTTGTGTGCATTAAAGATGAATGTTGTTGGAACATGATG
TGGTTGTGGTTTCAAAATACTATGATTTCAATAAAGGGGACAAAATATGTAATAGATAGTGCCTCTTTGCTCTGAGTTAG
TTTAATTGTCATGTATTGGTCATATTTCATTAATTTATAGTGTGTTTATTCTTCCCATTTTCCTATGACTGCATTTTAAT
TGAAGTGATTTAATCATTAAAATTGTAGCAAAACCGCATTGCTTTAAGTATAGAACGTGTATTTGGTAGGATCTTATAGT
TCTAGCTGCCTCTTAACCACCGAGATGTGGGTGATATGTAGAAGCAGAATAGAGAGGCCTTGAAATCATTAATTTGGTCT
ATATATGGACATAGGTTGTTGAGGAAAAGGTTAAAAAAAAGCAAAGAAACATTCTAAATTGTTGAGTATCGTGATTATTA
GGAAAGTTAGGATAGTGTAGGATATTATTCTACCTTCTCTTGTATACTCTAAGCAGCTCATGTACTCACTATATATACGC
CCACGAGGCTCAAGCAATACAACAACGATTTCACCAAATCCCTCTCTCCCTTTTAACATGGTATCAGCCTAACTGATCCA
AATCCTAGCCGTCGACCGCCACTTCCACACCGCGCCGCCATAGGGCGGTTGATCTCCATGCTCGCCACCGGGGGCCGCGC
CGCCCGTACCTAGGGTTCGTTCGTCGGTCGTGTTGATCGGCTGCCCTAGAGAGTCTTTTTCTCGATCCGATGATTAAGAT
TTTCTCTTTCGCTGATCTCGATGTTCTTTTTTGGTTTTCCGATCTAAGATCAGCCTGCGTCGCCCGCCACAGTTCGTCTT
GCAGATATCTCATCGTCCGTCTCTGAGTATGTGCTTCCGATCGAGCAACAGGGTGCAGCTGCATCGTCCGTTTCATGATT
TTTCCAGCGACTACATCAACCCACGCGCTATCGATGCGGGTCGTAGTGCCGCGGTCCGCGGTT
>chr1D_480
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-------------------------------------------------------------------------------A
ATTAAACACATGTGGAGTATCAACTAATTAACGGTTCGGTAGCTTGGCGGTGTCACTTTTCATTTCTTC-----------
-----------------------------ATGAATAAGGTACATTTTCAGTCTCCGCAAAATATAGTTACATTTTCGGTA
TCGGCCTTCCGTTCCTGTTGGACACTGCATCTCTGTCTCGACATACAAGTAAGTCGTATTTATCAACATGCGTATTATAA
ACTGTATGTGTATTATAATC---TATATGTCAGATTCGTTGTCTACTCGACATGGCAAGAACTAGCTAGGTGGCAATTAT
TAATTGTATTGTTCAATTAAGTTGTCAACTGCTCTTAGCCCCAATAAGCTCATATCAGATAGCCTTGATGG---TATTAA
TTAATTGTGCTTGGTTGCCAAGTAAG---------TGACCGGTGCTACCTGTGCATTACTTTGTTGCTAGGTAATGTCAA
AACCAGATGGTATGCTTCAAACTGCATGCAATGGGTTGACCACTAGTTATCTATAAAAAGCACACCTTT-----------
---------ACACCACAAAATCCATCATTCCCAAGGATCTCCTTGTCCTTCGTCTTGGCTCCACAACACCACAACTGATA
CTAGTAAGTAAGAAAATAATGGCTCCGGTGAAGGTGTACGGGTTGCCCATGAACGGAAGTGTGGCACGCGTTCTGGTATG
CCTAGAGGAAGTGGGAGCCGAGTATGAGGTCGTGGCTGTCGACCTACACACCGGTGAGCACAAGAGACTGCCGCATCTTG
CTCGTAATGTATGTTGCCGCCATGTCCCTCTTTGATTACATACATACTATGTATCTATCTTCTTGCCTCTTTGACTATAT
AGTTGTGTTGTTGTAAGGCTAATTAGATGCATCAAGTTACATGAATCAACACTTTGCGAAAGCTGATAGGGATCTTTTTT
TTTCTTGTCTCTGCTGTCCACAGCCCTTCGGCCAGGTCCCTGCGTTCCAGGATGGAGACCTGATCCTTTTCGGTGAGTAG
CTTCCTTGCTTAATTTGTGTGATATTGTA--------ATGATGGACACTATCATTTACTATTGA-TAGCGCCATGGTAGA
TGTCTCAATCGAGGTAGTTATTTTATCAGATAATGGTAGGTTGTAAAATGCCAAAGTCATGTCTCCTTTTTCAACTAGTT
AAGCACATCCTCTAAGTCACTAGGCTAGTATATAGTTCAGGAATTTTTCCTAGTTATATTGCTTGGATATTGTTATTCCT
TTTTATATAAAAGATAAGAATAATACTTCAAATAACTAGTGCATCATGAGTGAAAAGGGCAAGGCCCCATCTCGCACCAC
TGAATTATTCCAAATGTGTTATGATTTGGAAAAAGAGATAAGCAAAAAACGCCTTGCATTGCAAAGGATTGGATATGTGG
TAATTATTATTATTTTGGCCCTTGGTGCAAATAAATAAATAAATAAGAACATGAATCCATATAATGTTTTTAGAAAATCA
GATCTCTATAACTAGTTGAATTGTTTGCATGTATAACTAGCTGATTTTTGACAGAATCACGGGCAATCTCAAAGTATATA
CTCCGAAAAGAATCATCAGATTTACTGAGGGAAAACAACCTCTCTGAGTCTGCAATGGTTGATGTGTGGCTTGACGTCGA
ATCCCAGAAATTTGACAGCGTCATGCTGCCAATCATCTTTCAAGGGCTTGTCATCCCGGTTTACATGGGTGGGACTAGCG
ATCTTAAAGTTCTTGAAGAAAACCTAGAAAAACTGAAGGAAATCATGGAAGTCTATGAGGAACGCTTGTCCAAGTCCAAG
TACTTGGCAGGAGATTTCATCAGCTTAGCGGACATTAGCCATTTCCCAATGGTTCACCTATTGCATGAAACTCCATATGC
ATCGGTGCTCGATGCATATCCACATGTGAAAGCATGGATTGCTGGCGTAATGGATCGTCCTACTGTGAAGAAGGTCATCG
GGCTTATGAAGACATTTGGTTGATAGA-AACTATACAATAATTTGTGCACATTCGAGATGAATGTTGGTGGAACATGATG
TGGTTGTGGTTTGAAAATCCTATGATTTCAATAAAGGGGACAAAATATGTAATACCTAGTATGTCACTACTCCAAGTTAA
TGTAATTGTCATTTATCAATCATATGTTGTTGTTTGGTAGTGTGTTTATTCTTCCCATTTTCCTATTACTACATTTTAAT
TGTAGTGATTAAAGCATTAAAAATGTAGCAAAAATG---TGTTGTAAGCATATGTTATGCATTTGGTAGGCTTTTCTAGT
TCTAGCTGCATCTTAACCACCGAGATGTGGGGGCTATGTAGTAGTGGAACAGAGAGGCCTTGGAACTATTAATTTGTTTA
CATATGCACG-TAGGTTGATGAGGACAAAATTAAAAAAATACAAAGAAACAATC--------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
-------------------------------------S---------S---------------------SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------S-S--------S-S-------------------------
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-----SS--S----------SSS------S-------S--------------S------SSSSSSSS-------------
----------------------------------------------------S---S-S------S---S-SSS------
------------SS------------SSSSSSSSS--------------------------S------------------
------------------S--------------------------------------------------SSSSSSSSSSS
SSSSSSSSS-----------------------------------------------------------S-----------
------------------------------------------S----------------S-----S----------S---
------------------------------------S-----------------S-----------S-----S-------
-------------------S------------------------SS----------------------------S-----
------------------S------------------------SS---------S----------------------S--
--S---S------S---S----------------------S---------------------S----S--S---------
---S-------------------S-----SSSSSSSS-----SS-------------------SS-------S----S--
----------S--S---S-------------S------------------------------------------------
------------S-S-------------------S------------------------------------S------S-
-----------SSSS-S----------------------SS--------------S---S--------S-S-S-SS----
------------------S----S----S-----S-SSSS-SS-S----S----------------------S-------
------S----S------------S------S------------------S-----S-----------------------
-------S--------------------------------S------S-------------S------------------
-----S----S---------------------------------------S-----------------------------
---------------------------------------------S--S-------------------------------
----S-----------------------S----------------------------------------------S----
--------------------S-----------------S-----------------------------------S-----
SS-------S-----------------------------------------------S--------------------S-
-----------------------S-S-S-------SSS---------SS----SS------------S------------
------------S-----S-----------------------------------SS----SSS--SS-S---SS-----S
-S----------S---SSS------S-SS--SS--SS-----------------------------S---S---------
--S-------S--S--------S----------SS-SSS--S-S----S---SSSSS--S----------S-S--S----
---------S---------------------S-S-------S--SS---S------------S--SS---------S-SS
SSSSSSSSSSS-------S------S--SS---------SS----------S--SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_873
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-----------------------------------------------------ATCCGGTAGCCTCGATCGTA-------
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>reverse_2131
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--------------------------------------------------CGCAATGGTTGATGTGTGGC----------
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>forward_1508
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------------------------------------------------AGGATGGAGACCTGGTCCTC------------
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>reverse_3158
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-------------------------------------CCATAGGGCGGTTGATCTCC-----------------------
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