>input_sequence_53782
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-----------------------ATGGAGTCC------TGCGAGATCGCGCGCCTGCCGGAGGAGCTCGTGTCGGCGGCG
CTCTCCCTCACGTCGCCGCGCGACGCCTGCCGCGCCGCGGCGGTCTCCCCGGCCTTCCGCGCAGCCGCCGACTCGGACGC
CGTCTGGGCCTGCTTCCTACCGCTGCTCGCCGACCAACC------------------GCCGCTCGCTGACGGAGAGGC--
-GCTGCTGGCGTGCGGGAAGAAGGACCTGTTCCTCCGCCTCTCCGGCAGCTCCGTCCTCCTCCCAGGCGGACTCATGGTA
CGTAACTTAGTAACTACGTAT-------------ACAGGGCCAAGCCCAATAGCAAACCCATGGACTATATTTGTTCGA-
---------TTGCTA----ATGAATTCAACTCGCG--ATGG----TGCAGAGCATGTGGCTGGACAGGGAGACCGCCGCC
AAGTGCTACATGGTGGCGGCGAGGGAGCTGT----CCATCGCGTGGCGCGACACACCGCAAC---ACTGGACCTGGATCC
CTCTCGAGGACTCCAGGTTCCTTCCTACCTCCCTTTTGT--TTTACCCTTGCAGTTCCCCTGCTAGCTTGTGTTGCAGAA
TCAATGATGCTACCTGCATTCGTTGTCATCTGATTGCAGTTGAAATCCATCATTTTGAAACTTTTGTTGCGTACGTACTT
TCGTTGTGGACCTGTG--GTGTTACTCGTCCAATTTCAGTCGGGTTGAAGGTCCTGAGTTCTGAATTCTGAGTTCTGACG
ACATAC-------ATGAACGTACCATGGTGTACAATGTGAGCCAATACACAGAATAGTCACCAGCAGGA-----GTCATC
ACGAAATTAATTAGCAGTTGGTTATGT-TGATCACCAAAGTCA-------ATTTGCAACTTAGTTTGTTCT-TTGAGTAC
TCGGTCGCGCGTGAT-----------------------------------------------------------------
--------------------------------------------------------------------------------
------------CGATGCTAGATGGTTTTCTTCAAAGTTATGCAGCTGTTTGGTTTTCGTTTTCATCTTTGTTACGGATC
CTAACCCAATTTTTGAATCCAGGTTCTCCGACAGTGCTGAACTCATCTGGGTTTGTTGGTTGGAAATCCGCGGCAAGATA
CACAGCAAGATGCTGTCCCAAGGCTCAACTTACGCCGTTTACACCGTGTACAAGCTAGCAGAGGAGCCCGACGGGCTCAA
CTTTCCGGTCAATGCATCGGTGAGCGTTGGAGGAAGCATTCTTGCGTCCAAGGTCTGCCTCCAACGTGACCCGCACATGA
TCCATCCCGAGGATGTAGCGCTCCCTCATCAAAGGGTCGATGGTTGGATGGAGCTGGAGTTGGGTGAGCTTGTTTGTGAG
GCCGGTGAAGATGGCGACGTGTCCTTTGGCCTGTCAGAGACTGAATCTTTGTACTGTAAGAGCGGTCTCATCTTGCAGGG
CATCGAGATCAGGTGTAAGAATTAG-------------------------------------------------------
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>chr7A_1_TraesCS7A01G063600
TCATC---------------------------------------------------------------------------
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--------TTGTGATCCGATCATCATGTGTGAGTAATTTGGTAAGGCTATGGTTGTGGCGTCCCTTTGCAACCTGATGTG
TTTGTACAAGGGATTGATGAAATGACTTTGATTATTTAACATCATGTATGTGCCCGATTGCAATGGAGTTGTCTCTTGTT
TTCTTCTCGTTCTAAGGCCCTGCAAGTTACTTGGACCCCGTACCGTATATCTATCAAGGAGGAGGTAAGAAGTGAGGAGG
ACACATAACTATGCTGCTCCTTCACCTACATATTCCTTTAGATTGGATCTGCACAAAACTAGGTTGAATACCAAATTCCT
TTGCTTTTGATATTCAATAAGAATCAGATGAGCTTCCTTTTTCTATCTATTTTTTT------------------------
----------------------------------------TCTTCTCACACTCTAGCTTCAAAGAGCCCGCAGCTCGAGG
AGGAGTTGTTCTACCTGAAGAATGAAGACCTTCTAATGGGCTGACAACTCCTAAACCCATTAATAATTACAACAATTTTA
TTTTCTAAGG------------------------------AAACTCTAAAAAATAATATATACTTGCCAATAATTTTTCA
AATCAAGTTCTTAAAAATCTGAACTTATTTTAGAAAAATGTTTGTGTAATTTATTAAAGTGTCGGTACCTTGAAAA-TGG
TCATCTAATTGCAAAAGTGGTGTTCATGCATTACTTTTTTTATTCATGTAATTTTAAAAAAGCGTTGACACTTTTAAAGG
AATCATTCATTTTTTCATATAACTTCAAAAGTATAACACTCATGTATATTGTTTTA------------------------
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-------------AAGTTAGGTTGGGCTAGTGCAGTTCGTTGAGGGCCGAAGCACGATGGATTTGGGCCGGGCCGGCCTC
GCAGGGCTTAAATTTCAACTTTATTTCAGTCATCTGAGCCTGCATCCATGAGCAACATTTGTTGAAAAACTTGC------
------------------------------TTAGCTTTCTTCGCCCCAAATTAATGAAA---------------------
---------------------------TGCTTCGTCGCTAAGCCTTTGGCAGCATTTCCACTAGTAGTAGATCGAACCGA
GGAGGAGGAG-GA---GGAACCCATGGAGTCC------TGCGAGATCGCGCGCCTGCCGGAGGAGCTCGTGTCGGCGGCG
CTCTCCCTCACGTCGCCGCGCGACGCCTGCCGCGCCGCGGCGGTCTCCCCGGCCTTCCGCGCAGCCGCCGACTCGGACGC
CGTCTGGGCCTGCTTCCTACCGCTGCTCGCCGACCAACC------------------GCCGCTCGCTGACGGAGAGGC--
-GCTGCTGGCGTGCGGGAAGAAGGACCTGTTCCTCCGCCTCTCCGGCAGCTCCGTCCTCCTCCCAGGCGGACTCATGGTA
CGTAACTTAGTAACTACGTAT-------------ACAGGGCCAAGCCCAATAGCAAACCCATGGACTATATTTGTTCGA-
---------TTGCTA----ATGAATTCAACTCGCG--ATGG----TGCAGAGCATGTGGCTGGACAGGGAGACCGCCGCC
AAGTGCTACATGGTGGCGGCGAGGGAGCTGT----CCATCGCGTGGCGCGACACACCGCAAC---ACTGGACCTGGATCC
CTCTCGAGGACTCCAGGTTCCTTCCTACCTCCCTTTTGT--TTTACCCTTGCAGTTCCCCTGCTAGCTTGTGTTGCAGAA
TCAATGATGCTACCTGCATTCGTTGTCATCTGATTGCAGTTGAAATCCATCATTTTGAAACTTTTGTTGCGTACGTACTT
TCGTTGTGGACCTGTG--GTGTTACTCGTCCAATTTCAGTCGGGTTGAAGGTCCTGAGTTCTGAATTCTGAGTTCTGACG
ACATAC-------ATGAACGTACCATGGTGTACAATGTGAGCCAATACACAGAATAGTCACCAGCAGGA-----GTCATC
ACGAAATTAATTAGCAGTTGGTTATGT-TGATCACCAAAGTCA-------ATTTGCAACTTAGTTTGTTCT-TTGAGTAC
TCGGTCGCGCGTGAT-----------------------------------------------------------------
--------------------------------------------------------------------------------
------------CGATGCTAGATGGTTTTCTTCAAAGTTATGCAGCTGTTTGGTTTTCGTTTTCATCTTTGTTACGGATC
CTAACCCAATTTTTGAATCCAGGTTCTCCGACAGTGCTGAACTCATCTGGGTTTGTTGGTTGGAAATCCGCGGCAAGATA
CACAGCAAGATGCTGTCCCAAGGCTCAACTTACGCCGTTTACACCGTGTACAAGCTAGCAGAGGAGCCCGACGGGCTCAA
CTTTCCGGTCAATGCATCGGTGAGCGTTGGAGGAAGCATTCTTGCGTCCAAGGTCTGCCTCCAACGTGACCCGCACATGA
TCCATCCCGAGGATGTAGCGCTCCCTCATCAAAGGGTCGATGGTTGGATGGAGCTGGAGTTGGGTGAGCTTGTTTGTGAG
GCCGGTGAAGATGGCGACGTGTCCTTTGGCCTGTCAGAGACTGAATCTTTGTACTGTAAGAGCGGTCTCATCTTGCAGGG
CATCGAGATCAGGTGTAAGAATTAGA---GTCTAATTAAGGGAATGAGCTTTTGGGATCAGCTGAACGCATCCCGCAGAG
T----TGTCGAGTGCACAGGGGAAACTAATTAAGGAGGCATATTTGTTCATCATGTTATTAAACTAATGTGCTATCTTAG
ATTTCATTCAGATAGATGAATCCTTTTTGTTTATTCAATATTGTAAGAAGAAA-CAGTTAATGAGGAGGGGAATATTACC
CTCCTTGTATTATATATCGATCCTTCGTGAGGTGAATGAAGAGATCTGATCCATGTG--------GTTTAGCCAGCACAA
CATGGTACTCGCATTACAAAGCTTCTTTAGATCAAAGATAAGGTGCTTCGTTACTGAACTTTCATGCATGCAAATGAAAC
ATCAGGGGGTAGAAAATGTACATGAAAGTAACAAAATGTGGATACTATGACCGAGTAAACAATCACAATCTTTGAATCAT
TTAATTATTCTCAAATATGAAAATAATGTTAACCTTTAGGACAAACTGTTTGCTTCTTCTTTGGAGCCTCCAGCCTTTTG
CTGATTTCTTGGATTCGAGTGATGACATGGCCTCACAGACAACAATGTTGTACCTGAACGAGACGCACCTGAAAACGAAG
TGGCGCAACTGCCATCCATGTCGAGTTGTGTGCAGGGTTTTGGTTACCGCTCAAAATTTCAAGATTTACCATGGTTACCA
CATATTTCGGGCCACCTTGGTGAATGGTCATTTCAAGAAAAAGAAATCGAAGTTTTTGAATTTGTTGAATTCAAACGCTC
AATGTATAGTAAAATATGGCAGCACCTCACAACACTCGCATAGGCACCACTAAGCTAGTACCTCTTTTATGATAAATATA
AGTTCAAGTGCTATCTATATCTATTTTGAAAGGATTTGAATCCAAAATTGAATTATAATTTTCATTCAAAATTTGCTCAA
AATTTTGTGGTAACCGTGGTAACCACGTTTACCGGTCCCCCTCGGTAAAAATGCCCCATTCGGTAACCAAAACCTTGGTT
G
>chr7D_1
AGGAGGAGGAGGAGCAGATGGAGGCATGCGAGATCGCCCGCCTGCTGGAGGAGCTCCTGTCGGCAGCCTTATCCCGCACG
TCGCCGCGCGACGCCTGCCGTGCCGCGGCTGTCTCCGCGGCCTTCGGGACGGCGGCCGACTCCGACGCCGTCTGGGCCTG
CTTCCTGCCCAGCGGTCGTGACCTCCCGCTGCTCGCTGACGGAGAGCAGCTGCCATGCAGGAAGAAGGACCTGTTCCTCC
GCCTCTCCGGCAGCCCGGTCCTCCTCCCAGGCGGACTCCTGGTACGTACACACGTTAGGCGGATCACCCAGCCCAACAAC
AAATTTTGTTTTTGGGCTAATCAATTGGTCGCATCCAGAGCATGTGGCTGGACAGAGAGACCGGCGCCGGGTGCTACATG
GTGCCGGCGAGGGAGCTGTCCATCGGATGGGGCGCTCTCGCCGACTCGAGGTACCTTCCTTCCTTCCGTTACTCTGTCCT
TTGAGTTCCGTCGCAGCTAGCTTATTTTGGTCAATGAACAATGATGCTAGCTAGCTCGTCTAATTCCATACTAGTACATA
CTCTGAATATTTAATCGTGGCCCATGACTGAGTCTTGACTACATTATACTTCCTCTGCTCCTAAATATAAGTCCTTTTAG
AGATTTCAATAAAAAACTACATACATGTTTCTCAAAAAAAAAAACTACATACAAAGCAAAATGAGTGAATCTACACTCTA
AAATACGTCTACGTACATCTGTATGTATGTAGTTCCTCATTGCAATCTTTAAAAAGACTTATATTTAGGAACGAAGAAAG
TATATGTATATGAGGAATTAAACAATCATGAAAGAAAGTACTCCCTTCGAAAATAAATGTTGGGGTTTTAGATCTAACAG
AGGGAGTAGCAGTTAGTTCCCATCATCAGTTGGCTTTGCAACTTTTGTTCCCTTTGTGCTAGATGGGTTTTATCCAACTT
AATTATGATATCTTTTGATCTTCATCTTCGTTAAGAATCCTAAATGTATATGTGTTCAACTCCAGGTCTTCCGAGAGTGC
TGAACTCATACTAGTTTGCTGGCTGTATATCCGCGGCAAGATAGATAGCAAGATGCTCTCCCAAGGCTCAATATACTCAG
TGTACAGGGTGTACAAGTTTGCCAATTATTTGTATGGATTGTCCGACGGTTACTACGGGCTAGAATTGCCGGTCCAGAAG
GCATCAGTGAGCGTCGGAGACAACCACCAAATCCGCAAGGTCTGCATCCATCCTAACCAGCAAAGAAGCATGAGACGGAA
CTGTCATGCAACGCTTCCTCACAAAAGAGCTGATGGTTGGATGGAGCTGGAGCTGGGCGAGTTTGTTTGCGAGGGGCATG
AAGATGGGGACGTGTCGTTCGGTCTATCAGAGATGAAAGATTTGAGTAGGAAGAACGGTCTTATCGTGCAGGGTATTGAG
ATTAGGCATAAGATTTGAGGAGGCATCCATGCCCGAATCCGAGCCAGTCCTGGTAGACAGGGAGATAGACAACCTAGTGG
CTGGCGATGACCTACATCGAGTGATGGGTGTAGTTTTTGCGCTCATCACACCGTTGGTTAAATCAGAAAATCCCATAATT
ATTTAGAAATTCACTCCGATATTGTCACTAATGAATAACGAATACGAGAGATCGTGAAGTCTTTGGTTGAATATGTTTCT
GCGGGACATAAACATGGAAAGAAAGCATCACTTATAAGGTAAAAATAAAAATGAAGGAAGAAAGGAAGGAATTGGAGACA
CAACAAACCAACCAGAGTGCAAGACGACGTTCGGTACGAGCGAACGCTTGTACCGATCTCCAGAAGGTCCAACTGGTCAA
CCTTTATAAAGGGGTCAATACTAGAATCCCGGCTAAGAGAGCACCATTTGGGAAACAGAACACCGGAACCATCTTCCAAC
TCTCGCCCTCACTATTTCCCATCTCATATCCTTAGTCGCCACCATCATCACTGCAGCAATCCCTCTCCAAGTTAGTCATA
CCTGTAATCATGTATCTCAGCCGACAAGTATTGTAAAACATATTACAAATAAAGCCTTCCTCTTTATGTCTTCTTCAGTG
AGTTCATCTTGTGATCCGATCATCATGTGTGAGTAATTCCGTAAGGTAATAGTTGAGGCGTCCCTTTGCAACCCGATGTG
TTTGTACAAGGCATCGACTAAATGACTTTGACTATTTAACATCATGTATGTGCCCGTTTGTAAAGGAGTTGTCTCTTGTC
TTCTTCTCGTTCTAAGGCCCTGTGAGTTCCTAGGATC-----CCGTATATCTATCAAGGAGGAGGTAAGAACTGAGGAGG
ACACATAACTACGCTGCTCCTTCGCCTACTAATTCCTTTAGATTGGATTTGCAGAAAACTAGTTTGAATACCAAATCCCT
TTACTTTCTATATTCAATGAGAATCAGATGAGCTTCCTTTTTCTATCTTTTTTTTCTTCTAAAACTGTTTTTTGAACTAA
ATTTGCAGAGTCTCGCATGCCTCGTCTTCCGAACTCTGCCTCTCCTCACAATC-AGCTCCAAAGGGCCTGCAGCTCAGCG
AGGAGTGGCTCTACCTGAAGAATGAAGACCTTCTAATGGCCTGACAACTCCTTGGCCCATTAATAGGTACAACAATTTTA
ATTTTTTTAACAAATTCTATAAAATA-----------------------------GTATATACTTTCCAATAATTTTTGA
AATCAAATTCTTAAAAGTCTTAACTAATTTTAGAAGAATGCTTGTGTAATTTTTT-----GTTCGTACATTGAAAAATGG
TCATATAATTGCATTTATAATTGTTGTCACATTTATTTGTTTTTTCCT--------------------------------
----T----TTTTCATATATAACTTTAAAAATATAACACTCATGTATATTGTTTTAAGAGTCAATTACACAACAGGTGTC
TGAACTTGGCGAGAAAAATCAGTTTGGTGCTAAAACTTGCGGCATACATTGAACCGGTGACAAAACTTGGCTTGGGCGTG
CATCTACGGTGCTAATCACGTTTGTATACGCACAGTGTGCTGACGAGGAACGCCAACGTGGCGCCGGACCCAGCGTCGGT
GACTGGAAGGCGGGGAGTATGGCGTGTGGCCTGGTTTTTGTGGAAAGCACCATGGCATTTTTTCTTCACAGAAAAGCCCC
TGAATAAATACCAAATCTTGCAAAAATACCATGAAACTTAACAACGTCTCTATGACCCTTGGGGCCCACCCGTCAGTAAA
CAATAGGAAGAGATATTAATATATGTAGAAAAAGATGTGCGCTGTGGTTCGCACCATAGACATCACACTACGAAGATGGC
AATGCTAACCATTGCACCAAGTCTAGCTTGGTGTCAACAGGGGATAGTTAGATACGTGAGCTCACCCTAACAAGACTGCC
ATGTGGGCCCTAGTGTCAGTGACTGGGCCACACAGGCGAGAGCGTGTGCGATGGAATTTTTTTTTTCGCACAAAAGAGAC
CCTCGATTTTTCTTTAAAAATAACCTGAGACGTCACTAAACATCTCTATGACCTTTGGGTCCCATCCTGCAGGATACATT
ACAAAGATCAAATTGATATGCAAAATACTGTGCCTCACAGGTTTGAACCAAAGACACCCAAAAGTATTTATGGTGTTCAT
GTGAGGTACAATATTGTGCCTCACAGGTTCGAACCAAAGGCACCCAAAATATATGTGTTTACTTTACGAGAAATATTCAT
ATTGAAAATAATGTTCATGTAATTCTAAAAAATATTTATGTATTACTTGGAAAAAATTTATAAAACTAAAAGAACAAATA
TGAAATATAATAGTATTTATCAATTGGAAAAACTATGGTGTGCAAAATGGGGCGCGGTCGCTCCAGGTCATTTAAGCCGC
ATGTGCGTGATTATAGATATTAAGCACTGCTATCCCGTATAAACATCAGCGTGGCTTTGGTGTTGTGGCTAGCATGATGG
TTTTGTTGTCGTGAGGTCGCGGGTTCGAAATGGCACTCGTTTTGGATATTAATATCCTTTTGTACTGTTTCCTGATGGGT
GGGCCCCAAGGGCCATAGAGATGTAATTACGTTTCAAGGGATTTTTCCAAGATTTGTATTCAGTCAGGGGCTTTTTTGAA
GAAAAAATAATTTCAGGGTGTTTTCTGTAAAAAAACACAGGCCACACAACCGCCTTCGAGTCACTGACACTAGGGCCCGC
GCCATGTTGGCGTGCCTCATCAGCACACCATGCGTATACAAACATGATTAGCACTGTAGATGCACGCCCAAGCCAACTTT
TGTCATCGGTTCAATGTATGCCGCAAGTTTTAGCACCAAACTGACTTTTCTTGCCAAGTTCAGGCACCCATGGTGTAATT
GACTCTTGTTTTAAAGTTTGGTTGGGCTAGTGCAGTTGGTTGAGGTCCGGAGCACAATGGATTTGGGCCGGACTGGGCAC
GTAGGGCTTAAATTTCAACTTTATTTCAGTCATCTGAGCCTGCATCCACGTGTGATGTCTAAACAGAAAATGTGTGATGT
GTCTGCGAGTGCGACAATGTTAAGATAACTTTAGCTTGCTTCGCCCCGAATTAATGAAATCAATTTCCTCCCGAGTGCTT
CGTCGCTAAGCCAAATTTCCTCCCGAGTGCTTCGTCGCTAAGCCTTTGGCAGCATTTCCACTAGTAGTAGATCGAACCGA
GGAGGAGGAG-GAAGAGGAACCCATGGAGTCC------TGCGAGATCGCGCGCCTGCCGGAGGAGCTCGTGTCGGCGGCG
CTCTCCCTCACGTCGCCGCGCGACGCCTGCCATGG---------------------------------------------
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----------TGCTG----ATCAATTCAACTGGTGCCAT-GGTGCTGCAGAGCATGTGGCTGGACAGGGAGAGCGGCGCC
AAGTGCTACATGGTGTCGGCGAGGGAGCTGT----CCATCGCTTGGCGCGACACACCGGAAC---ACTGGACCTGGATCC
CTCTCGACGACTCCAGGTTTCTTGCTTTC-CTCCCTTTCCATTTTTCCTCGCTGTGCCCTTGCTACTGGACATGGTGTTG
-------------CTGAATTCGTTGTCATCTGTTTGCAGTCGAATTCGCTCATTTTGAAACTGTTGTTGCGTACGTAGTA
CTATATATAG--------------------CAATTTCAGTTGGGTTGAAGGCTCCGAGTTCTGAATTCTGACC----ACA
TATACAATACTGTATGAACGTACCATGGTGTATAATGTGAGCCAAAACCGAGAATAGTCACCAGCAGGA-----GTCATG
----ACGAAATTAACAGTTGGTTATGA-TGATCACCAAAGTCAATTATATATTTGCAACTTAATTTGTTCT-TTGAGTAC
TCGGTCGCGT----------------------------------------------------------------------
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-----------GCGATGCTAGATGGTTTTCTGCAAACTTATGCTGTTGTTTGGCTC------TCATCTTCGTTACGGATC
CTAACCCAATATTTGACTCCAGGTTCTCTGAGAGTGCTGAACTCATCTGGGTTTGTTGGTTGGAAATCCGCGGCAAGATA
CACAGCAAGATGCTATCCCAAGGCTCAACTTATACCGTTTACATCGTGTACAAGCTGGCAGATGATTCCGATGGGCTGAA
CTTTCCGGTCAATGCATCGCTGAGCGTTAGAGGAAGCGTTATGGCATGCAAGGTCTGCCTCCAACGTAACCCGCACATGA
TCCATCCGGAGGACGTAGTGCTCCCTCATGAAAGGGTGGATGGTTGGATGGAGCTGGAGTTGGGTGAGTTTGTTTGTGAG
GCGGGTGAAGATGGCGATGTCTCCTTCGGCCTGTCAGAGACTGAATGTTTGAACTGTAAGAGCGGTCTCATCTTGCAGGG
CATCGAGATCAGGTGTAAGAACCAGATCAGTCTAATTAAGGAAATGAGCTTTCGGTATTAACCGAACGCATTCAGGGTTG
TCCAATGTCCAGTGCATAGGGGA----AATTAAGGAGACATATTTGTTCATCATGCTATTAAACTAATGTGCTATCTTAG
ATTTCATTCAGATAGATGAATCCTTTTTGTTTATTTAATATTATAAGAAAAAAACAGTTAATGAAGAGGGGAATATTACC
CTCCCTGTATTATACATCGATCCTTCTTGAGGTGAATGAAGAGATCTGATCCATGTGGTCTTATAGTTCAGCCAGCACAA
CATTGTACTCGCATTGCAAAGCTTCTTTAGATGAAAGATAAGGTGCT---------------------------------
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>chr7A_38
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----------------------------------------GTAAGGCAATGGCTGAGGCGTCCCTTTGCAACCCGATGTG
TTTGTACAAGGGATCGATGAAATGATTTTGATTATTTAACATCATGTATGTGCTTGATTGCAATAGAGTTGTCTCTTGTC
TTCTTCTCGTTCTAAGGCCCTGTAAGTTCCTAGGATC-----CCATATATCTATCAAGGAGGATGTAAAAATTGAGGACG
ACACATAACTACACTGCTCCTTCGCCTACATATTCCTTTAAATTGGATCTGCACAAAACTAGGTTGAATACCAAACCCCT
TTAATTTCGATATTCAATGAGAATTAAATGAGCTTCCTTTTTCTATCTATCTTTTCCTAAAACT---TTTTTTAACCTAA
ATTTGGAGAGTCTCGCATGCCTCATCTTCCGAACTTAGCCTCTCCTCACACTCTAGCTGCAAAGGTCCTGTAGCTCAGGG
A---------------------------------------------------------------------------TTTT
ATTTTTTAAACAAATTCTTTTTTGACCAATTTTTTAAAACAAATTCTAAAAAATTGTATATACTTTCCAATAATTTTTGA
AGTCAAGTTCTTAAATATCTTAACTTATTTTAGAAAAATGTTTGTGTAATTTATTAAAGCGTTCGTACCTTAAAAAACGT
TCATATAATTGCAAAAG--GTGTTCATGCA-------TTTTATTCATGTAAGTTTAGAAAGTGCTGACACATTGAAGAAA
GTTAT----TTTTTTCATATAAATCTAAAACTATAACACTAATGTAT--TGTTTTA------------------------
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-------------AAGTG-GGTTGGGCTAGTGCAGTTGGTTGAGGGCCGAAGCACGATGGATTTGGGCCGGGCCGGCCTC
GCAGGGCTTAAATTTCAACTTTATTTCAGTCATCTGAGCCTGCATCCATGAGCAACATTTGTTGAAAAACTTGC------
------------------------------TTAGCTTTCTTCGCCCCAAATTAATGAAA---------------------
---------------------------TGCTTCGTCGCTAAGCCTTTGGCAGCATTTCCACTA-TAGTAGGTCGAACCGT
---GGAGGAG-GA---GGAACCCATGGAGTCC------TGCGAGATCGCGCGCCTGCCGAAGGAGCTTGTGTCCGCGGCG
CTCTCCCTCACGTCGCCGCACGACGCCTGCCGCGCCGCGGCGGTCTCCCCGGCCTTCCGCGCTGCCGCCGACTTGGACGC
CGTATGGGCCTGCTTCCTG------------------CC------------------GCCGCTCGCCGACGGAGAGCC--
-GCTGCTGCCGTGCGGGAAGAAGGACCTCTTCCTCCGCCTCTCCGGCAGCTCCGT-------CCAGGCGGACTCACGGTA
CGTATAC------------------------------------AGCCCAAGAGCCAGCCCATGGACCAAACTTGTTCGA-
---------TTGCTG----ATCAATTCAATTGGTGCCAT-GGTGCTGCAGAGCATGTGGCTGGACAGGGAGAGCGGCGCC
AAGTGCTACATGGTGGCGGCGAGGGAGCTGTACGTCCATCGTGTGGCGCGACACACCGCAATAATACTGGACCTGGATCC
CTCTCCACGACTCAAGGTTTCTTGCCTTC-CTCCTTTTCCAAGTTTCCTCGCAGTTCCCCTGCTAGCTTGTGTTGCTGAA
TCAATGATGCTACCTGCATTCCTTGTCATCTAATTGCAGTTGAAATCACTCATTTTGAAACTGTTGTTGCGTACGTACTT
TCGTTGTGGACTTGTGGTGTGTTACTCGTCCAATTTCAGTTCGGTTGAAGGTTCTGTGTTCTGAATTCTGACCACATACA
TATACACTACTGTATGAACGTACCATGGTGTACAATGTGAGCCAATACCCAGAATCGTCACCAGCAGGACAGGAGTCATG
----ACGAAATTAGCAGTTGGTTATGT-TGATCACCAAAGTCA-------ATTTGCAACTTAATTTGTTCT-TTGAGTAC
TCGGTCGCGCA---------------------------------------------------------------------
--------------------------------------------------------------------------------
------------CGATGCTAGATGGTTTTCTGCAAACTTATGCTGTTGTTTG------GTTTTCATCTTCGTTATGGATC
CTAACACAATGTTCGACTGCAGGTTCTCTGAGAGTGCTCAACTCATTTGGGTTTGTTGGTTGGAAATTCGCGGCAAGATA
CACAGCAAGATGTTGTCCCAAGGCTCAACTTACGCCGTTTACA---------AGCTAGCAGAGGAGCCCTACGGGCTGAA
CTTTCCAGTCAATGCATCGGTGAGCGTTGGAGGAAGCGTTCTTGCATGCAAGGTCTGCGTCCAACGTAACCCACACATGA
TCCGTCCGGAGGACGTAGCACTCCCTCATGAAAGGGTGGATGGTTGGATGGAGCTGGAGTTGGGTGAGTTTGTTTGTGAG
GCTGGTGAAGATGGCGATGTGTCCTTCGGCCTGTCAAAGACTGAATATTTGAACGGCAAGAGCGGTCTCCTCTTGCAGGG
CATCGAGATCAGGCATAAGAATTAGATCAATCTAATTAAGGAAATGAACTTTCGGGGTTAACCGAACGCATCCAGGGTTG
ACCAATGG-------ATAGGGGA----AATTAAGGAGCCGTATTTGTTCGTCATGCTATTAAACTAATGTGCTATCTTAG
ATTTCATTCAGATAGATGAATCCTTTTTGTTTATTTAATATTCTAAGAAGAAA-CAGTTACTAAAGAGGGGAATATTACC
CTCCCTGTATTATAAATCGATCCTTTAGGACAA-----------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------ACAATCTTTGAATCAT
TTAATTATTCTCCAAGGTGGAAATAATGTTAACCTTTAGGACAAAAAGTTTGCTTCTTCTTTGGAGCCTCCAGCCTTTTG
CTGATTTCTTGGATTGGAGTGATGACA-----------------------------------------------------
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>chrUn_972
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----------------------------------------------------------------------ATCGAATCGA
GAGGACCGCAAGA---GGGGCCGATGGAGCCC------TGCGAGATCGCGCGCCTGCCGGAGGAGCTGCTGTCGGTGGCG
CTCTCCCGCACGTCGCCGCGCGACGCTTGCCGCGCTGCGGTGGTCTCCCCGGCCTTCCGTGCCGCGGCCGATTCCGACAC
CGTCTGGTCCTGCTTCCTG------------------CCACCGCTGGACGAACTCCCGCCGCTCACCGACGGAGAGCCT-
-----------TGCAGGAAGAAAGACCTGTTCCTCCGCCTCTCCGGCAGACACGTCCTCCTCCCAGGCGGACTCATGGTA
CGTACACTAACAATACTCCTCGTGGTCTCGGTGAATACGGCGGATCCCAACAATCAGCCCTTGTAAGAAATTTTGCCTCT
CCGTTGATCTCGCTG----GCCATTTCTATCGGTGCCAT-G----TGCAGAGCATGTGGCTGGACAGGGAGACCGGCGCC
AAGTGCTACATGGTGTCGGCGAGGGCGCTGT----CCATCGCGTGGCGCGACACTCCACGC---TACTGGAACTGGGTCC
CTCTCGCAGATTCGAGGTCCCCTCCCTTC-CTCTGCTCTTAA--TTTCCTTCAGTTCCC---------------------
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>chrUn_972
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----------------------------------------------------------------------ATCGAATCGA
GAGGACCGCAAGA---GGGGCCGATGGAGCCC------TGCGAGATCGCGCGCCTGCCGGAGGAGCTGCTGTCGGTGGCG
CTCTCCCGCACGTCGCCGCGCGACGCTTGCCGCGCTGCGGTGGTCTCCCCGGCCTTCCGTGCCGCGGCCGATTCCGACAC
CGTCTGGTCCTGCTTCCTG------------------CCACCGCTGGACGAACTCCCGCCGCTCACCGACGGAGAGCCT-
-----------TGCAGGAAGAAAGACCTGTTCCTCCGCCTCTCCGGCAGACACGTCCTCCTCCCAGGCGGACTCATGGTA
CGTACACTAACAATACTCCTCGTGGTCTCGGTGAATACGGCGGATCCCAACAATCAGCCCTTGTAAGAAATTTTGCCTCT
CCGTTGATCTCGCTG----GCCATTTCTATCGGTGCCAT-G----TGCAGAGCATGTGGCTGGACAGGGAGACCGGCGCC
AAGTGCTACATGGTGTCGGCGAGGGCGCTGT----CCATCGCGTGGCGCGACACTCCACGC---TACTGGAACTGGGTCC
CTCTCGCAGATTCGAGGTCCCCTCCCTTC-CTCTGCTCTTAA--TTTCCTTCAGTTCCCTTG------------------
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>chr4B_985
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---GGAGGAG-GA---GGAGCCGATGGAGCCCGGCCAGTGCGAGATCGCGCACCTACCGGAGGAGATCCTCTCGGCGGCG
CTCTCCCGCACGTCGCCGCGCGACGCCTGCCGCGCCGCGGCGGTCTCCCCGGCGTTCCGCGCCGCCGCCGACTCCGACGC
CGTCTGGGCCTGCTTCCTG------------------CCTCCGCTCGCTGACCTCCCGCCGCTGGCCGACGGAGAGCTGC
TGCTGCTGCCGCGCGGGAAGAAGGACCTGTTCCTCCGTCTCTCCGGCAGCCCCGTCCTCCTCCCAGGCGGACT---GGTA
TGTATAC------------------------------------ACAT--ACAACTAACCCCTGGAACAAATTTGGTTGA-
---------CCGCTAGCCAATCGACTCAAGTGGGGCCATGG----TGCAGAGCATGTGGCTGGACAGGGAGAGCGGCGCC
AAGTGCTACATGGTGCCGGCGAGAGACCTGT----CCATCGCGTGGCGCGACACGCCCCGC---TACTGGTCCTGGATCC
ATCTCGCCGACTCGAGGTTTCGTGCCATC-CTCCTTTGG--TCTTTCCTTGCAGTTCCCTTGGAGCTAGCTTCT------
--------------------------------------GTTGCAGTCGTTAATTTTGATAGTGCTGTTGCGTACGTGCTT
GCGTTGTAGTCTTATAATTGCAAGTGGAAGTGCTAGGATGCAGGGTAGTAGATAGTAC----------------------
-------------------------------------TGGGCCAAAACCCAGAATATT-----------CAGTAGCCATG
----AAAAAACTAGCAGTGAGTTCAGCAA-------------A-------GTTTGCAATTTAATTTGCCCTGTTGAGTAC
TCCCTCCGTTTGTAAATATAAGACCTTCTAGATATTTTAATATGAGACTACGTAGGAAAATATATAGATGCATTTTAGAA
CGTAGATTCACTTATTTTGCTCCGTGTGTAGTTTAAATTAGAATCTCTAAAAAGGCTTGTATTTAGGAACGGAGGGAGTA
TTTTGCAATGCGCGATGCTAGATGGTTTTCTGCAACGTATGATA--TGTTTCGTTC------TTGTCTTGGTTACAAATC
TTAACCCTGCGTTTGACTCCAGGTTC-CTGAGAGTGCTCAACTCAGGTTCGTTTGCTGGTTGGAAATCCACGGCAAGATA
CACAGCAAGATGCTGTCCCACGGCTCAGCTTATGCCGCTTACGTGGTGTACAAGTTGGACGATGGGTCCTACGGTCTGGA
TTGGCCTGCTGATGCATCGGTGAGCATTGGAGGCACCGACCTTGCCCGCAAGGTTTGCCTCCAACCCAACCCGCAAAGAA
GCCATGCAGAGGATGTAGTGCTCCCTCGTGAAAGGGATGATGGTTGGATGGAGCTGGAGCTAGGTGAGTTTGTCTGTGAG
AGGGGTGAAGATGGCGACGTCTCCTTCGGCCTGGCGGAGACGAAACGGTTGAACGGGAAGGGCGGCCTCATCATGCAGGG
AATCGAGATAAGGCATAAGAATTAAATCGGACTAATTAAGGGAG-GAGCTTCTGGGAT----------------------
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>chr4A_1723
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-----------------------CATGGTGTATAATGTGAGCCAAAATCGAGAATTCTCACCAGCTAG-CAGGAGTCATC
----ACGAAATTAGCAGTTGGTTATGTCTGATCACCAATGTCAAT----TATTTGCAACTTAATTTGTTCT-TTGAGTAC
TCGGTCGCGT----------------------------------------------------------------------
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-----------GCGATGCTAGATGGTTTTCTGCAAACTTATGCTGTTGTTTGGCTC------TCATCTTCGTTACGGATC
CTAACCCAATATTTGATTCCAGGTTCTCTGAGAGTGCTCAACTCATCTGGGTTTGTTGGTTGGAAATCCGCGGCAAGATA
CACAGCAAGATGCTATCCCAAGGCTCAACTTATACCGTTTACATCGTGTACAAGCTGGCAGATGATCCCGATGGGCTGAA
CTTTCCGGTCAATGCATCGCTGAGCGTTAGAGGAAGCGTTATGGCATGCAAGGTCTGCCTCCAACGTAACCCGCACATGA
TCCATCCGGAGGACGTAGTGCTCCCTCATGAAAGGGTGGATGGTTGAATGGAGCTGGAGTTGGGTGAGATT---------
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>SNPs
SSSSS---------------------------------------------------------------------------
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--------------------------------------SS-------S-------S-----------------S------
--------------S----------------------------------------------------------------S
----------------------S-----S--S---S-SSSSS-----------------------------S--------
-----------S-----------S----------------------------------------------------S---
--S----S----------S------------------------------------S------------------------
-------------------------------------------S--------------S-----S---S-------SS--
------S-S------------------------------S------------SSS----------SS-------------
S---S-S-SS---------------------------------S----------SS---------S------------S-
--------------------S--------------------------------------S--SS----------------
----S-------------S-----------S-SSS----------------S----S---SSSS-SSSSSS--SS-S-SS
SS-SSSSSS----------------S----S-------------------------------------------------
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------------------S------------------S------------------------------------------
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--------------------------------------------------------------S-----------------
------------------SSSSSSSSSSSSSSSSSSS-----------------------------S---------S---
--------S-----------------------------------------------------------------------
----SSS--SS--SSSSSSSS--------------S-S---SS-------S---S-----------S-S-----------
---------------------S---------S-S-----------------------------------------S----
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-------S-------------------S-S-S------------SS------------------------------S---
-----------------------------------------------SS-------------S-----------------
-----------S----------------------------------------S------------------SSS-SS--S
SSSSSS------------------------------------------S-------------------------------
SSSS--SS------------------------------------------------------S-----------------
----------SSS-S-----------------------------------------------------------------
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-------------------------------S-------------S---------SSS-----------S----------
----------S-----S-----------S--S------------------------------------------------
-------------------------------------------S---------------------------------S--
-------------------------------------S-------S-S-------------------S------------
-------S---------------------S-------S------------------------------S-----------
--S-----------------------S-------------------S----S----------------------------
----------------------------------------------------------S-S-S----------S-SSSS-
---------S------S------SSSS----------S-----------------S------------------------
-----------------------------------S------S---------------------S---------------
----S---------S-----------S-----------------------------------------S-----------
---S-----------S----------------S--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------
------------S--SS--S-------------------------SS---------------------------------
---------------S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S
>forward_4438
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------------------AGGTTGGGCTAGTGCAGTTC------------------------------------------
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>reverse_6397
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----------------------------------------------------------------------------AGAG
TTGTCGAGTGCACAGG----------------------------------------------------------------
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