>input_sequence_53720
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------------ATG
GGGCCCCGCTCCGCTCCACCCCCATCCTCCTCCTCCCCTCCTCCC--------------------CGTATAAAACCAACT
ACCCACCCCCGTCTCCCCTCTCTCTCCTC------CTCGCTCTCTCTCAAAAAGCTCGCTCGCTCGCACGCACCACCAAC
ACCACACCGCTCCTCCTTTCCCTCAGACCCACCCACAACCACAACAGCATATATCATCAGTCCGTTACTCGTGTGCGGCG
CCGGCGGCATCTCCTCCTGTCTACGTAGGTATCGTATACGTGCCGGCGGCATGGGTAGGTCCCCGTGCTGCGAGAAGGCG
CACACCAACAAGGGCGCCTGGACCAAGGAGGAGGACCAGCGCCTCATCGCCTACATCAAGGCCCATGGCGAGGGCTGCTG
GAGGTCCCTCCCCAAAGCCGCAGGTATGTGCCGCGC--TCATCGGCGACCAAGACGCGTCTAGGTGTACGGCGAC-----
-------GGGTGAATGATGTGTGTGTGTATGCATGGTGCGTGGTGCAGGGCTGCTGCGGTGCGGGAAGAGCTGCAGGCTG
CGGTGGATCAACTACCTGAGGCCGGACCTCAAACGGGGGAACTTCACCGAGGAGGAGGACGAGCTCATCATCAAGCTCCA
CGAGCTGCTCGGCAACAAGTAACAATTCTTGTC---CTTCTGATGATGATATATCAGTGGAGATAGATAGATCGAT----
----------CGATCCACGGACGTACGGCGTTATTTATTTCT----TATCGTGTCGGTCTTGCGCTTGTGCTCTCAGGTG
GTCGCTCATCGCCGGGAGGCTGCCGGGGAGGACGGACAACGAGATCAAGAACTACTGGAACACGCACATCAAGCGCAAGC
TCCTGGCCCGCGGCATGGACCCGCACACCCACCGCCCGCTCAATGCCATCGCGGCGGCCGCCATGCCCGCGCAGCAGCAG
CAGCAGCTCCGGGCCGCGCACGAACGCCACTTCGCTGCTGCCACACCCGGTGGCCACCACCTCCAGCCGCAGCAGCAGGA
TCCCTTCGCGGCTCTCTCCAGCTCAGCCGAACCCGCCTGCAGCCACAGCAGCGACGACGAGCCGGCCGGCTCCGCCACGC
CGCCGCCACCGTCGCGACGGCACCTCGGCATCGACCTCAACCTCTCCATCAGCCTCGCGCCCTACCAGCCA---GACGAC
CCAGCGGTGAAACAGGAGGCAGCAACGACGGGGAGCCAGAACAATGCAACAACGTCCACGTCGGCGGTGTGCATGTGCTT
GAACCGCCTCGGGTTCCAGGGCGCCGGCGAGGGATGCCGCTGCGGCGGCGCTTCCTCCGTGCCCATGCAGCAGCAGGCCA
GCAGCGCGCAGCGCATGTTTAGATTCATCGCACCACTAGAGGGAGGAGGCCAATAG------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
>chr4B_1_TraesCS4B01G096500
TTTTCATGATGAATCTAAAAATACCGATTTGATATTATGGATTTTGATATATTTCTCTATAAATTTGATCAAATTTAAAA
GGTTTGACTTTCAAAAAAAATCAATACACCTTATATTTTGAAACAAAATGATTATTTTTTCAAGAAATCCAACAACACCA
ACATCACGGCAAAGCACATCCACTTCTAGTATATTATTATTTGGGGGACTTCATCGTTAGAGGGATGCTAGATTTGAGTT
AAAACATTCAAT-AACTCTTGTGAGATATGCCATGTCCAATAAAAAGAATATCAATCAATGGTTATAATTATTTTCAAAT
TAAAGTGCATGCCCAAAGGTTTCTGCCTCTGTGGCGCACATCGCTAT-------------------------ATACCTTG
CATCTCTCGTGCATCAGCTCAATATTTGA-AAAAAATGAAGGGCATGCAACAAGGCAACTGCTCATCGAAATGGCCGCAA
-AGATAAGAAATAAGGCAGTACCTCCCCTTTTGCCCCAGTCGACGATAGAGACGGAAAACCAATATACTTGCATTTCCTA
AGTATAGTAAGATATCT--GACCAACTGCCAAGGACCCAAGGTATGGAATTTTTCTTTTCGAGGCAAGTGTAGAATTTTC
AAGTAAAAGAACTAGCCATTTGATGTTGAACTACCCTCCCTCCAAAAACCAATAGCCTCTGCCTCACCCCAAAACCCAAC
CCCGTTGCATTCATTAGGCCGCACCTACTACTGCTGGTGTGCGCTCGCCGGGTACACCTACCAACTAGCCCCCCTCCTAC
CCCCAAAAGAAAAAAAAACAAAATG----GAAAAAAACCACGAAGCGAATAATAATTAAA-AAAAAAGAAAGAGAGGGGG
GAGGAAGG-GAATAGGACAAGCGGCAGTCGAGCAGAAGAAGCGGAGCATACCTACCTACCAAATCCAGGCCTAGGGCTTT
GCAACCACTCG-CCCCACCTCCCCCCTCTCCTCTCATCGCACCAACTCGGTCAAATGGCCCAGAGGGATCCGCGTCAATG
GGGCCCCGCTCCGCTCCACCCCCATCCTCCTCCTCCCCTCCTCCC--------------------CGTATAAAACCAACT
ACCCACCCCCGTCTCCCCTCTCTCTCCTC------CTCGCTCTCTCTCAAAAAGCTCGCTCGCTCGCACGCACCACCAAC
ACCACACCGCTCCTCCTTTCCCTCAGACCCACCCACAACCACAACAGCATATATCATCAGTCCGTTACTCGTGTGCGGCG
CCGGCGGCATCTCCTCCTGTCTACGTAGGTATCGTATACGTGCCGGCGGCATGGGTAGGTCCCCGTGCTGCGAGAAGGCG
CACACCAACAAGGGCGCCTGGACCAAGGAGGAGGACCAGCGCCTCATCGCCTACATCAAGGCCCATGGCGAGGGCTGCTG
GAGGTCCCTCCCCAAAGCCGCAGGTATGTGCCGCGC--TCATCGGCGACCAAGACGCGTCTAGGTGTACGGCGAC-----
-------GGGTGAATGATGTGTGTGTGTATGCATGGTGCGTGGTGCAGGGCTGCTGCGGTGCGGGAAGAGCTGCAGGCTG
CGGTGGATCAACTACCTGAGGCCGGACCTCAAACGGGGGAACTTCACCGAGGAGGAGGACGAGCTCATCATCAAGCTCCA
CGAGCTGCTCGGCAACAAGTAACAATTCTTGTC---CTTCTGATGATGATATATCAGTGGAGATAGATAGATCGAT----
----------CGATCCACGGACGTACGGCGTTATTTATTTCT----TATCGTGTCGGTCTTGCGCTTGTGCTCTCAGGTG
GTCGCTCATCGCCGGGAGGCTGCCGGGGAGGACGGACAACGAGATCAAGAACTACTGGAACACGCACATCAAGCGCAAGC
TCCTGGCCCGCGGCATGGACCCGCACACCCACCGCCCGCTCAATGCCATCGCGGCGGCCGCCATGCCCGCGCAGCAGCAG
CAGCAGCTCCGGGCCGCGCACGAACGCCACTTCGCTGCTGCCACACCCGGTGGCCACCACCTCCAGCCGCAGCAGCAGGA
TCCCTTCGCGGCTCTCTCCAGCTCAGCCGAACCCGCCTGCAGCCACAGCAGCGACGACGAGCCGGCCGGCTCCGCCACGC
CGCCGCCACCGTCGCGACGGCACCTCGGCATCGACCTCAACCTCTCCATCAGCCTCGCGCCCTACCAGCCA---GACGAC
CCAGCGGTGAAACAGGAGGCAGCAACGACGGGGAGCCAGAACAATGCAACAACGTCCACGTCGGCGGTGTGCATGTGCTT
GAACCGCCTCGGGTTCCAGGGCGCCGGCGAGGGATGCCGCTGCGGCGGCGCTTCCTCCGTGCCCATGCAGCAGCAGGCCA
GCAGCGCGCAGCGCATGTTTAGATTCATCGCACCACTAGAGGGAGGAGGCCAATAGTAGCACTAGTAACAGTAACATTCG
GACATATACCTTTTTAACTAAAGCCACACATGGTTAATTATTAATTTAACTCGCTAGCTCTCTGTAACATGTTCATGAGG
AAATTAAATCTACTCCCTTTCTAT-------TAATTCGC-------AGCTAGCATCGGGCCATGCATGCATCATCA----
-------TCTAGGTGACATAGTTCATGAATAGATCATCAGCCAGCAGCTCCTACCTTCTTTCCTTCATGTCTTTATTAAT
ATTGTCATAGGAAGTTCATCATCTTCCACTAGATCTAATCAAGCATATCCCCAATTTAGGGAAGTTAGGTTCATCATCTA
GGGAGTGAGTGATGCATAGTGATGACTGATGAGAGTGGGAGTGAGCGTTATGGTGCTAGCTGGTGGTGGTTATGGGAAGT
TAGGTTCTTGGATGTCTGCAGGCTCGCACATGACATGGCCATCCAGTGACATCACTGAATGGTTGAGTTTTCTATGCATA
AAAAAGGTTTGT-----CTTGTAGAGAGGAGAAGGGG------AGTGGGCAGCATGTGAGATGCCCATATTTTCTGGTTA
GGTAGGTAGGTAGAAGGTATGGGAGAGGTGTTAATGAAGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNAGGGGCATGGACTGAGGAGCTTTTTGGTTAGTTAATGACTTAATGGTCAGAGAGCTTGGCGTGTGCTGTGTCTGGCC
TTCTTGGGGGTA----TGGATGCCGGAGTTGGTGGGCTAATTAGTAATTTAATCATGGACCAGTACTACAGTAATCTAAA
GCCAGCTT---GTTTTTTGAGGCGGATGGGGGCCAGTCAGGGTATCAGTAGTTTGTTTG
>chr4A_211
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------TCATCGTTAGAGTGGTGCTAGATTTGAGTT
AGAATGTTCAATAAACTCCTGTGAGGTATGCCATTGTT--TAATAAAAATATCAATCAACGGATATAATTATTCCCAAAT
TAAAGTTTATGCCCAAAGGAATCTGCCTTTGTGGCCTAGATCGCCATACACCACCACGCTCGTATCAATACCATACCGTC
CATCTCTCGTGCATCACCTCAATATATTTGAAAATTTGAAGGGCATAC-ACAGGGCAATTGCTCATCGAAACGGCCGCCA
CATGTAAGAAATAAGATGGTATCATCCTTATGCCCCGGTCGTTGACAGAGATGGAAAAACGAATGTAGTTGCATTTCCTA
AGTA--GTAAGATATTTTCAACGAACCGCCAAGTA--TT----------------TTTGCGGGGCAAGCGTAGAATTTTC
ATGTAAAAGAACCAGTCATTTGATGTTGAACTACCCTCCTTCCAAAAACCAAGA------GCCTCACCCCAAAACCCAAC
CCCGTTGCATTCATTAGGCTGCACCTACTCCTGCTGGTGTGCGCTCGCCGGGTACACCTACCAGCTAGCCCCCCTCCTCC
CCCAAAAGAAAAATGA---AAAATG----AAAAAAAATCAGAAAACGAATAATAAATAAGCAGAAAAGAAAGGGAGGGGA
GAAGGAAGGGAATAGGACAAGCGGCAGTCGAGCAGAAGAAGCGGAGCATACCTACCTACCAAATCCAGGCCTAGGGCTTT
GCAACCACTCGCCCCCACCTCCCCCCTCTCCTCTCATCGCACCAACTCGGTCAAATGGCCCAGAGGGATCCGCGTCAATG
GGGCCCCGCTCCGCTCCACCCCCATCCTCCTCCTCCC----------------------------CGTATAAAACCAACT
ACCCACCCCCGTCTCCCCTCTCTCTCTCCTCCTCGCTCGCTCGCTCTCAAAAAGCTCGCACGCACGCACGCACCACCAAC
ACCGCACCGCTCCTCCTTTCCCTCAGACCCACCCACAGCCACAACAGCATATATCATCAGTCCGTTACTCGTGTGCGGCG
CCGCCGGCTCCTGTCTTCAACGTACCTACGTGCCG------GCCGGCGGCATGGGGAGGTCCCCGTGCTGCGAGAAGGCG
CACACCAACAAGGGCGCCTGGACCAAGGAGGAGGACCAGCGCCTCATCGCCTACATCAAGGCCCATGGCGAGGGCTGCTG
GAGGTCCCTCCCCAAAGCCGCAGGTATGTGC----CGCTCATCGGCGACCAAGACGCGTGTACG------GCCAT-----
-------GGGTGAATGATGTATGT----ATGCATGGTGCGTGGTGCAGGGCTGCTGCGGTGCGGGAAGAGCTGCAGGCTG
CGGTGGATCAACTACCTGAGGCCGGACCTCAAACGGGGCAACTTCACCGAGGAGGAGGACGAGCTCATCATCAAGCTCCA
CGAGCTGCTCGGCAACAAGTAACAATTCTTATCCTTCTTCTTCTGATGATGCATCAGTGGAGATAGATAGATCGGT----
----------CGATCCACGGGCGTACGGCGTTATTTATTTCTTATATATCGTGTCGGTCTTGCGCTTGTGCTCTCAGGTG
GTCGCTCATCGCCGGGAGGCTGCCGGGGAGGACGGACAACGAGATCAAGAACTACTGGAACACGCACATCAAGCGCAAGC
TCCTGGCCCGCGGCATGGACCCGCACACCCACCGCCCGCTTAATGCCATCGCGGGGGCCGCCATGCCGGCGCAGCAGC--
-------TCCGGGTCGCGCACCAACACCAGTACGCGGCTGCCACACCCGGTGGCCACCACCTCCAGCCGCAGCAGCAGGA
TCCCTTCGCGGCTCTCTCCAGCTCAGCCGAGCCCGCCTGCAGCCACAGCAGCGACGACGAGCCGGCCGGCTCCGCCACGC
CGCCGCCACCGTCGCGACGGCACCTCGGCATCGACCTCAACCTCTCCATCAGCCTTGCACCCTACCAGCCG---GACGAC
CCAGCGGTGAAACAGGAGGCAGCAACGACGGCGAGCCACAACAATGCAACAACGTCCACGTCGGCGGCGTGCATGTGCTT
GAACCGCCTCGGGTTCCAGGGCGCCGGCGAGGGATGCCGCTGCGGCGGCGCTTCCTCCGTGCCCATGCAGCAGCAGGCCA
GCA---CGCAGCACATGTTCAGATTCATCGCGCCGCTAGAGGGCGGACGCCAATAGTAGCACTAGTAACAGTAACATTCG
GACATATACCTTTTTAACTAAAGCCACACATGGTTAATTATTAATTAAACTAGCTAGCTCTCTGTATCATGTTCATGAGG
AAATTAAATCTACCCCCTTTCTAT-------TAATTCACAGCTACTAGCTAGCATCGGGCCATGCATGCATATGCATCAT
CATCTAGTCTAGGTGACATAGTTCATGAATAGATCATCAGCTAGCAGCTCCTACCTTCTTTCCTTCTTGTCTTTACTAAT
CGTGCCATAGGAAGTTCATCATCCTCCACTAGATCTAATCAAGCATATCCCTAATCTAGGGGAGTTAGGCCCATCATCTA
GGGAGTGAGTGATGCA-------GAGTAATGAGAGTGGGAGTGAGCGTTATGGTGCTGGCTGGTGGTGGTTATGGGAAGT
TAGGTTCTCGGATGTCTGCAGGCTAGCACATGACATGGCCATCCAGTGACATCACTGAATGGTTGAGTTTTCTATGCATG
AAAAAGGGTTTGTCTTGTA-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
>chr4D_211
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------TCATCGTTAGAGGCGTGCTAGATTTGAGTT
AAAATGTTCAAT-AACTCTTGCGAGATATGCCATTGTG--TAATAAAAATATCAATCAACGTAGATAAATATTCCGAAAT
TAAAGTGTATGCCCAAAGGAATATGCCTTTGTGGCCTAGATCGCCATACGCCACCACGCTCGTC------CCATACCTTC
CATCTCTCGTGCATCACCTCAATA--TTTGAAAATTTGAAGGGCATAC-ACAGGGCAATTGCTCATCAAAACGGTCGCCG
CAGGTAAGAAATAAGATAGTATCGCCCTTTTGTCCCGGTCGCCGGCGGAAC-CGGAAAACTAATATAGTTGCATTTCCTA
AGTA--GTAAGATATTTTCGACCAACCGCCAAGTATTTT----------------TTTGCGGGACAAACGTAGAATTTTC
ATGTAAAAGAACTAGTCATTTGATGTTGAACCACTCCCCCTCCAAAAACCAAGAACTGAA-CCTCACCCCAAAACCCAGC
CCCGTTGCATTCATTAGGCTGCACTTACTCCTGCTGGTGT--GCTCGCCGGGTACACCTACCAACTAGCCCCCCTCCTCC
CCCAAAAGAAAAACGA---AACGAAACGAAAAAAAAATCACGAAGCGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTATAAAACCAACT
ACCCACCCCCGTCTCCCCTCTCTCTCCTC------CTCGCTCGCTCTCAAAAAGCTCGCACGCACGCACGCACCACCAAC
ACCGCACCGCTCCTCCTTTCCCTCAGACCCACCCACAGCCACAACAGCATATATCATCAGTCCGTTACTCGTGTGCGGCG
CCGGCGGCTCCTGTCTTCAACGTACCTACGTGCCG------GCCGGCGGCATGGGGAGGTCCCCGTGCTGCGAGAAGGCG
CACACCAACAAGGGCGCCTGGACCAAGGAGGAGGACCAGCGCCTCATCGCCTACATCAAGGCCCATGGCGAGGGCTGCTG
GAGGTCCCTCCCCAAAGCCGCAGGTATGTGCCGCGCGCTCATCGGCGACCAAGACGCGTGTACGTGTACGGCAAC-----
-------GGGTGAATGATGTGTGTGTGTGTGCATGGTGCGTGGTGCAGGGCTGCTGCGGTGCGGGAAGAGCTGCAGGCTG
CGGTGGATCAACTACCTGAGGCCGGACCTCAAACGGGGCAACTTCACCGAGGAGGAGGACGAGCTCATCATCAAGCTCCA
CGAGCTGCTCGGCAACAAGTAACAATTCTCATCCTTCTTCTGACGGTGATATATCAGTGGAGAAAGACGGATCGAT----
----------CGATCCACGGGCGTACGGCGTTATTTATTTCTTATATATCGTGTCGGTCTTGCGCTTGTGCTCTCAGGTG
GTCGCTCATCGCCGGGAGGCTGCCGGGGAGGACGGACAACGAGATCAAGAACTATTGGAACACGCACATCAAGCGCAAGC
TCCTGGCCCGCGGCATGGACCCGCACACCCACCGCCCGCTCAATGCCATCGCGGGGGCCGCCATGCCGGCGCAGCAGC--
-------TCCGGGCCGCGCACCAACACCAGTACGCTGCTGCCACACCCGGGGGCCACCACCTCCAGCCGCAGCAGCAGGA
TCCCTTCGCGGCTCTCTCCAGCTCAGCCGAGCCCGCCTGCAGCCACAGCAGCGACGACGAGCCGGCCGGCTCCGCCACGC
CGCCGCCACCGTCGCGACGGCACCTCGGCATCGACCTCAACCTCTCCATCAGCCTGGCGCCCTACCAGCCGGGCGACGAC
CCGGCGGTGAAACAGGAGGCAGCAACGACGGCGAGCCACAACAATGCAACAACGTCCACGTCGGCGGCGTGCATGTGCTT
GAACCACCTCGGGTTCCAGGGCGCCGGCGAGGGATGCCGCTGCGGCGGCGCTTCCTCCGTGCCCATGCAGCAGCAGGCCA
GCA---CGCAGCACATGTTTAGATTCATCGCACCGCTAGAGGGCGGACGCCAATAGTAGCACTAGCAACAGTAACATTCG
GACATAC--------AACTAAAGCCACACATGGTTAATTATTAATTAAACTAGCTAGCTCTCTGTAACATGTTCATGAGG
AAATTAAATCTACTACTCCTTTCCTATTACGTAATTTGC-------AGCTAGCATCGGGCCATGCATGCATATGCATCAT
CGC-----CTAGGTGACATAGTTCATGAATAGATCATCAGCTAGCAGCTCCTACCTTCTTTCCTTCTTGTCTTCATTAAT
ATTGCCATAGGAGGTTCATCATCTTCCACTAGATCTAATCAAGCGTATCCCTAATTTAGGGGAGTTAGGTTCATCATCTA
GGGAGTGAGTGATGCA-------GACTGATGAGAGTGGGAGTGAGCGTTATGGTGCTGGCTGGTGGTGGTTATGGGAAGT
TAGGTTCTTGGATGTCTGCAAGGTAGCACATGACATGGCCATCCAGTGACATCACTGAATGGTTGAGTTTTCTATGCATA
AAAAAAGGTTTGTCCGCCTTGTAGAGAGGAGAGGGGGAGTGGGAGTGGGCAGCATGTGAGATGCCCATATTTTCTGGTTA
GGTTGGTAGGTAGAAGGTATGGGAGAGGTGTTAATGAAGGGGATAAAGTGCCATGGAGGAGGAGGAGGGG----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---AGGGGCATGGACTGAGGAGCTTTTTGGTTAGTTAATGACTTAATGGTCAGAGAGCTTGGCTTGTGCTGTGTCTGGCC
TTCTTGGGGGTGGATGTGGATGCCGGAGTTGGTGGGCTAATTAGTAATTTAATCATGGATCAGTACCACAGTTATCTAAA
GCCAGCTTCAGGTTTTTTGAGGCGGATGGGGGCCAGTCAGGGTATCAGTAGTTTGTT--
>chr5B_1261
CGGCGGA-------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------CATGGGGAGATCGCCGTGCTGCGAGAAGGCG
CACACCAACAAGGGCGCCTGGACCAAGGAGGAGGATCAGCGGCTCATCGCCCACATCAAGGCCCATGGAGAAGGGTGCTG
GAGATCGCTCCCCAAAGCAGCAGGTACAACATA-TA-TATCTTTATTTGGTATGCGGACTCAACATTGGCATGCATGCCG
GCCGTGTGGGAGA-TGATGTTGATTCGTCTGCATGTACTC--GTGTAGGGTTGCTGCGTTGTGGAAAGAGCTGCCGGCTG
CGGTGGATCAACTACCTGAGGCCGGACCTTAAGCGCGGCAATTTCACCGACGAGGAGGACGAGCTCATCATCAAGCTTCA
CGAGTTCCTCGGAAACAAGTAAGCCATCTAA----GCCCCACCTTGCTATGGCCATCGAAAAATCTGAACTGAAATATAT
GTGTCGGATGCGATGTAACGGCGGACGGCGGTGATATTGATTATTGGCTTCCCTGCTTTG--------------CAGGTG
GTCGCTGATCGCCGGGAGGCTGCCGGGGAGGACGGACAACGAGATCAAGAACTACTGGAACACGCACGTCAAGCGCAAGC
TCCTCGCCCGCGGCGTCGACCCGCAGACCCACCGCCCGCTCAATGC----------------------------------
--------------------------------------------------------------------------------
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>chr5D_1261
CGGCGGA-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------CATGGGGAGATCGCCGTGCTGCGAGAAGGCG
CACACCAACAAGGGCGCCTGGACCAAGGAGGAGGATCAGCGGCTCATCGCCCACATCAAGGCCCATGGAGAAGGGTGCTG
GAGATCGCTCCCCAAAGCAGCAGGTACAACATACTCCTATCTTTATTTGGTATGCGGACTCAACATTGGCATGCATGCCG
GCCGTGTGGGAGG-TGATGTTGATTCGTGTGCATGTACTC--GTGTAGGGTTGCTGCGTTGCGGAAAGAGCTGCCGGCTG
CGGTGGATCAACTACCTGAGGCCGGACCTTAAGCGCGGCAATTTCACCGACGAGGAGGACGAGCTCATCATCAAGCTTCA
CGAGTTCCTCGGAAACAAGTAAACCATCTAA----GCCCCAGCTTGCTATGGCCATCGAAAAATCTGAACTGAAATATAT
GTGCCGGATGCGATGTAATGGCGGACGGCGGTGATATTGATTATTGGCTTCCTTGCTTTG--------------CAGGTG
GTCGCTGATCGCCGGGAGGCTGCCGGGGAGGACGGACAACGAGATCAAGAACTACTGGAACACGCACGTCAAGCGCAAGC
TCCTCGCCCGCGGCGTCGACCCGCAGACCCACCGCCCGCTCAATGC----------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
>chr5A_1261
CGGCGGA-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------CATGGGGAGATCGCCGTGCTGCGAGAAGGCG
CACACCAACAAGGGCGCCTGGACCAAGGAAGAGGATCAGCGGCTCATCGCCCACATCAAGGACCATGGAGAAGGGTGCTG
GAGATCGCTCCCCAAAGCAGCAGGTACAACATAGTA-TATCTTTATTTGGTATCAGGACTCAACATTGGCATGCATGCCG
GCCGTGTGGGAGGGTGATGTTGATTCGTCTGCATGTATTC--GTGTAGGGTTGCTGCGTTGTGGAAAGAGCTGCCGGCTG
CGGTGGATCAACTACCTGAGGCCGGACCTTAAGCGCGGCAATTTCTCCGACGAGGAGGACGAGCTCATCATCAAGCTTCA
CGAGTTCCTCGGAAACAAGTAAGCCATCTAATTAAGCCCCAGCTTGCTATGGCCATCGAAAAATCTGAACTGAAATATAT
GTGTCGGATGCGATTTGACGGCGGACGGCGGTGATATTGATTCTTGGCTTCCTTGCTTTG--------------CAGGTG
GTCGCTGATCGCCGGGAGGCTGCCGGGGAGGACGGACAACGAGATCAAGAACTACTGGAACACGCACGTCAAGCGCAAGC
TCCTCGCCCGCGGCGTCGACCCGCAGACCCACCGCCCGCTCAATGC----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------S---------------
----SS----------------------------SSSSSS---S--S------------S--S----------SS-----
-------S-----------SS-------S------SS-S-----S----------------------------------S
----------------S--------S-SS-----SS----------S-S---S-----S------------S------S-
---S-----------SS----S-S---S---SS---SSSSSSSS-SSSS-SS--------S------S------------
----SS---------S----------S------S-SSSSSSSSSSSSSSSSSSSS---S--S------S-----------
-S-------------S------------------------------------S-S-SSSS--------------------
-------------------S---------S------------------------------------------------S-
---S---SS----SS-SSS----------S-------S-----------------S---S--S---------S------S
--S-S-S-------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------SSSSSSSS-----------------------------------
------------------------------------------S----------------S---S----------------
---S---------------------------------S------------------------------------------
--------SS--SSSSSSSS-SSSSSSSSSSS-SSSSSSSS--------------S------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------S--S-----------------
--------------------------------------------------------------------------------
--------------------------------------S-----------------------------------------
------------------------------S-------------------------------------------------
--------------------S-----------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------S------------S----------SS
SSSSSSS--------------S---S---S-S------------------------------------------------
------------------------------S-------------------------------------------------
-------------------------------------------------------S--------------S---------
-------------------------------S------S----------------------------S------------
--------------------------------------------------------------------------------
---SSS------S---------------------S--------S---S--------------------------------
----------------------------------------------S----S----------------------------
-----------------------------------------------------------------------SSS------
-----------------------------------------S------------------------S-------------
----S----------------------------------------------S---------S------------------
----------------SSSSSSS----------------------------------S----------------------
------------------------S-------------------------------------------------------
-------S--SS--------------------S-----------------------------------------------
---S-------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS------------------------------------------------------------S----------------
-----------S-----------------------------------------------S------S-----S-------
---------------------------------------------------------SS
>forward_178
--------------------------------------------------------------------------------
------------------------------------------------------------------------------CA
ACATCACGGCAAAGCACA--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----------------------------------------------------------
>reverse_1639
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------GAACTTCACCGAGGAGGAGG----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
>forward_596
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------TCTGACCAACTGCCAAGGAC--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------------
>reverse_2435
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------ACTAGAGGGAGGAGGCCAAT--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
>forward_1184
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TCTCAAAAAGCTCGCTCGCT----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
>reverse_2858
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------------AGCTGGTGGTGGTTATGGGA---
--------------------------------------------------------------------------------
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-----------------------------------------------------------
