>input_sequence_53696
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-ATGGAGGGTTCCAGTTTGAGAGCTCCGGTAGATGATGGACTTATCTTGAAGACAAGCAAGGGTGCGGGCATTGGTTTAG
CTGCTGGCAGCGTTTGGGGCTTGCTGGTTTCTATGCTGCACAATGGACCTAAGGTTGGCAGTAATGTCAAGTATCCTGAG
CTGGTTAGAACTGGCAAGGTGTGTCGAAGTTACGCGGGAACCTTGGCAATTCTTGGAGCTACATATGTAGGCGTGGAGCA
GTCTCTTGAAAGGGTCAGGGGGAAGAAGGACATCATTAATGGTGCTGTGGCTGGTTTTGCTGCGGGTGCAACTATGGGTT
TCAGAGGTAATTATCTATAC---------TAGTTGTTATGCTTG----------------------------------GC
CTGAAATTTCTAA---TTCGGTTAAATGACCGTCCTTGTGGATTATCTGCTTCCTTTTTCGGAATTCAAAATTGTGAATT
TTCCAGGCATACCTTGAGTCCACTCTGCAAACTTTGATTGGATGTTTCACTCTTGTATCATAATGTGGAACCAACATTTG
TGATGATT------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------TTTTCCTCCATTATGCATCCATCTTTA----------------------------------------
----------------------------------------------------------GTACTTTACAGTCGGTCCTGTA
TTACTGGTTCATACAGTATTTAATCACATGTTGCCACTATTTTCGCTGGTGACGCGGTCGTCAAAATATGTACGCAGAGT
TAGCCTCAGTTGGGTTGGGCAGGTTCAACGGTTCAAGTCCTTTGGCTTGTATTTGGATCCATTTTTTGCTTTATTATTTA
AACATTTAGTTTTTCTTATTTTCGTTTCCATTATTTTGATAGTCCAAGTCAAAACAAAATGTCTGGAAATTAGACATTAT
AAGAAAGATGATGCTGGAAAGGTCAGTTTAGAACTAGATCTGCTATTTTTCTGCAAACATATGCAGTTAGGGATTCAGTT
GAGGATCTTGGAGGAGTAG-CAAAAATCATGATATTGACATATTTTGACATAGTTAGGGATTCAGTATGCAGTTAGGGAT
TCAGTATTCAGTGCATATGCAGTTAGGGATTCAGTATGAAACATTAGGGGATGATTTACTGTTAGGTTTGACATAGTTTC
ACTTTGATGCCCCTTCCAATGCAGTACATAT--CTTGGAAGGAAATCTCCTCTTCCCTATGTTTCCTATTATCTTCCACT
ACGACGATGGCCCTACTATGCGTGACTCTTTCTTCAATTTGTTAGTTCGGAGTCGAAATTTACTAATACTACTGACCAGT
CTAACATTTTTATCCTTGTATG----TATATGCACAGCCGGGAGACTCCGGACACTCCTCGTGTCAGGGTCTGCGCTCGC
TCTGACTTCGGTACTCTTGGATGTGACTGGAATGAGAACTACTGAGGAGGAAGAAAAAGCTGAGAACCACTAA-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------
>chr5A_1_TraesCS5A01G173600
TTTAACTTGACCCATTACGGCCGGGGG--TTTTGTCAAAACCGATTACTCCCGACTCAA-----------AAGAAAAGGA
TTATGTAATTCTCAAAAAAAAA--GATCATGTCTCCAATTACTTTGCGGCAACGTGATATTATAGTAGGCCTAAATAAAG
GGACGCTAATCTTCTTGCGGCGCACGCGGTCTCCCTCGCTTCCTTCCCTCATCATAAAAAAGGAAAATAGTTGTCTCTCT
CGCTCTCGCTATCGACGCAGGCAAACCTCCGCAACACCAG---GAAGAAGAAGAAGAAGCAAAAGCGAGCGGACGAACCG
AGGAGAGAAATCAAGAGGTTGGTTTGTCGCTACCC-TAACTTGTTCCGAGACTTCCCACGAACGCTTTTCTGATCCCGAT
CGAGGCTTCGCTTGCGCTGTCGCTGCTGGCGGTCTCTTCCTTCGCCGTTTTCCCGCCTCCAATTTGGTGACGGCCGGTTT
CGTCGGCGTCCGGCCATGAAGATCTT---------------------------------------CTCACTGTCGATTGC
GATCGATTTGAACGTGCCCATGCTCGTTTTATTCTCGTTCTTGGTTCCTGGCTACATATGG----TAGGCGGTTCTCGCA
GCAGTAGTGCGATCAAGAGCTTTGGTTAGCGTGCTGCGATCTGCTCGATCATGTGAATCCGTGCTTTGCTTATTGCGGTC
TTCTCGTAGGATCCGTTACGCTCTAGTAAATTCCCTTATATATGTATGCTCCGGATATAGCAACGATGAGTTTGACGACA
AACGGCGGATGACGGTATTGTAGTTCTGAACTTGGATTGTCCATCCTGTTTTATCTACTCCCTCCAGTCCTTTTTACTCT
GCTCGAT-------------------------------------------------------------------------
---------------------------------TTGTTCGAAATCAT---------------------------------
--------------------------------------------------GTAGCACATATAACATTGTT----TCGTGT
TGATGGCATTGTTTTCTTGACCTCATTCTTTATTATCTTGACTTGGTACACCTATTGTTGCTTGTAAATTGCCATTCTCG
TT-------------------------ATTCATTACTCTAAC-TCTGCTGGATTTTTTATCAGTTTCCTTGTACCAGGAA
CATGGAGGGTTCCAGTTTGAGAGCTCCGGTAGATGATGGACTTATCTTGAAGACAAGCAAGGGTGCGGGCATTGGTTTAG
CTGCTGGCAGCGTTTGGGGCTTGCTGGTTTCTATGCTGCACAATGGACCTAAGGTTGGCAGTAATGTCAAGTATCCTGAG
CTGGTTAGAACTGGCAAGGTGTGTCGAAGTTACGCGGGAACCTTGGCAATTCTTGGAGCTACATATGTAGGCGTGGAGCA
GTCTCTTGAAAGGGTCAGGGGGAAGAAGGACATCATTAATGGTGCTGTGGCTGGTTTTGCTGCGGGTGCAACTATGGGTT
TCAGAGGTAATTATCTATAC---------TAGTTGTTATGCTTG----------------------------------GC
CTGAAATTTCTAA---TTCGGTTAAATGACCGTCCTTGTGGATTATCTGCTTCCTTTTTCGGAATTCAAAATTGTGAATT
TTCCAGGCATACCTTGAGTCCACTCTGCAAACTTTGATTGGATGTTTCACTCTTGTATCATAATGTGGAACCAACATTTG
TGATGATT------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------TTTTCCTCCATTATGCATCCATCTTTA----------------------------------------
----------------------------------------------------------GTACTTTACAGTCGGTCCTGTA
TTACTGGTTCATACAGTATTTAATCACATGTTGCCACTATTTTCGCTGGTGACGCGGTCGTCAAAATATGTACGCAGAGT
TAGCCTCAGTTGGGTTGGGCAGGTTCAACGGTTCAAGTCCTTTGGCTTGTATTTGGATCCATTTTTTGCTTTATTATTTA
AACATTTAGTTTTTCTTATTTTCGTTTCCATTATTTTGATAGTCCAAGTCAAAACAAAATGTCTGGAAATTAGACATTAT
AAGAAAGATGATGCTGGAAAGGTCAGTTTAGAACTAGATCTGCTATTTTTCTGCAAACATATGCAGTTAGGGATTCAGTT
GAGGATCTTGGAGGAGTAG-CAAAAATCATGATATTGACATATTTTGACATAGTTAGGGATTCAGTATGCAGTTAGGGAT
TCAGTATTCAGTGCATATGCAGTTAGGGATTCAGTATGAAACATTAGGGGATGATTTACTGTTAGGTTTGACATAGTTTC
ACTTTGATGCCCCTTCCAATGCAGTACATAT--CTTGGAAGGAAATCTCCTCTTCCCTATGTTTCCTATTATCTTCCACT
ACGACGATGGCCCTACTATGCGTGACTCTTTCTTCAATTTGTTAGTTCGGAGTCGAAATTTACTAATACTACTGACCAGT
CTAACATTTTTATCCTTGTATG----TATATGCACAGCCGGGAGACTCCGGACACTCCTCGTGTCAGGGTCTGCGCTCGC
TCTGACTTCGGTACTCTTGGATGTGACTGGAATGAGAACTACTGAGGAGGAAGAAAAAGCTGAGAACCACTAAGTCAATG
TATCATCCTGAACAGCTGTATCTACAACTTCACTCAAGCAGTTCCATGTTTCTGTTCT-AAGCATGCACAATACCAGAGG
AGTTTCTCTGAATGTAGTCTGTTCATAGTAGAGGTAGTAAAGG-ATATGGTACCATGTGGTGGTTGCTCCTGATCTGTAA
ATTCAAGTTTGA--AGTACTTTTGGCATTTCATACACGCTTTAGCAATCGCTGAAGTTCATGGTCGAAAGTGTTCAAGTA
CGATCTTGTCATCCCAAATTTTAATCGGGATGTTTGAATATAACATTGTTCCCCACTTATTTGGTGGATGCTTATTTTCA
CTGAGTGTTATGTGACCCGATGACTGAGGCCATGTAGATTTCTTGTTTTATTTCTTCTATTAACGAGTTGTGGTGTTATC
TGCTGTAGTAGGGAGTAATTTATATCATCCCCATAGTGCATAGTGTCTTAAATGGTTTCATTGATTAGCTTGTAGACTCA
TTTT-TTTTAAAAACCGCTATGTTACAGTAAA------------------------------------------------
------CAAATTTGCCTTGGTGTTATGTTAAAGCAGTGCTACACGGACGATGCTTCCTGCACGATGCACGATGGACAAAA
GCATCCATTGGATTGTATTGTCTTGCAAATCTGCATTGTTCAAGGAATGCATCGTCCAAAAATCGTGCATGCACAATCGT
GTGTAGAGTAGTTTCGGTTATGTTAC------------------------------------------------------
--------------------------TAGCTAATTTACTCTCACTATGACCAGCCTCATGACTTCGTGACATTAAAAGTA
CATGGATTTTTTGTAGCTCGCATC-AAAATGCATTTCATTGTGACATTTTTACACCGATGTACTCCCTCTGTACAAAGTT
G---TAAGTCAGCAACATTTATTTTG----GGACGGGGTAGCATACATCACTATGTAT----------------------
-------------GTTATATTCTTCAATAGTTTTTAAAAACTCAAGTTGATTTTGAATTTTTTTTGAAAATTTCAGGCTC
CAAGGAGCTCGGTGGCC-AAAAAATCCTCACTTGTTTGTATGATACTTCCTCCGTC
>chr5D_1
TTTAACTTGGCCCATTACGACCGGGGTTTTTTTGTCAAAACCGATTATTCCTGACTCAATTTTCTCAAAAAAAATAAGGA
TTACTCCCGACTCAAAAAAAAAAGGATCATGTCTCCAATTACTTTGCGGCAACGTGATAT---AGTAGGCCTAAATAAAG
GGACGCTAATCTTCTTACGGCGCACGCTGTCTCCCTCGCTTCCCTCCCTCATCATAAAGAAGGAAAATAGGGGTCC----
--CTCTCGCTATCGACGCAGGCAAACCTCCGCAACACCAG---GA---AGAAGAAGAAGTAAAAGCGAGCGGACGAACCG
AGGAGAAGAATCAAGAGGTTGGTTTTTCGCTACCCCTAACCTGTTCCGAGACTCCCCACGAACACTTGTTTCATCCCGAT
CGAGGCTTCGCTTGCGCTGTCGCTGCTGGCGGTCTCTTCTTTCGCCGTTTTCCCGCCTCCAATTTCT-------------
--TCGGCGTCGGTCCATGAAGATCGGGTCTGTCGGAGAGACGCGGAACAGAGATTTAATCGCTAACTCGCCGTCGATTGC
GATCGATTTGGTCGGG-----GCTTTTTTGCTTCTCGTTCTTTGCTCCTGGCCACATATGC----TAGGCGATTCTCGCA
GCAGTAGTGCGATCAAGAGCTTTCGTTTGCGTGCTGCGATCTGCTCGATCCTGTGAATCCGTGCTTCTTGTCG-------
-----------------------------ATTCCCTTATATATGTAAAC-------------------------------
---------------------AGTTCTGAACTTGGATTTTCCATCTTGTTGTGCTCTGCTGAAGTTTGCCTAGAGCCTTC
TCAGTGTAAACCTGGAGACTCTCTAAAGATTACTTTCTGAATTCCTTCCTTGTAAGCCTTTAAATTCTGTGATTATTTGG
AACATGAATTTGTGCTATGCAATGCGGCCTTCCTTGTTTGAAATCAT---------------------------------
--------------------------------------------------GTGGCACATATAGCATTGTT----TCGAGT
TGATGTCATTGTTTTGTGGACCTTATTCTTAATTATCTTGACTTAGTGCACTTACTGTTGCTTGTAAATTGCCATGCACT
TACTGTTGCTTGTAAATTGCCATTCTCGTCCATTACGCTAACTAAAGCTGGATTTTTAATCAGTTTCTTTGTACAAGGAA
CATGGAGGGTTCCAATTTGAGAGTTCCGGTAGATGATGGACTTATCTTGAAGACAAGCAAGGGTGCAGGCACTGGTTTAA
CTGCTGGCAGCGTTTGGGGTTTGCTGGTTTCTATGCTGCACGATGGACCTAAGGTTGGCAGTAATGTCAAGTATCCTGAG
CTGGTTAGAACTGGCAAGGTGTGTCGAAGTTACGCAGGAACCTTGGCAATTCTTGGAGCCACATATGTAGGCGTGGAGCA
ATCTCTTGAAAGGGTCAGGGGGAAGAAGGACATCATTAATGGTGCTGTAGCTGGTTTTGCTGCGGGTGCAACTATGGGTT
TCAGAGGTAATTATCTATACTAGTAAGTATAGTTGTTATGCTTAGCCTG-------------------------------
---AAATTTCTAATTGTTCGGTTAAATGACCGTCCTTGTGGATTATTTGCTTCCTTTTTCAGAATTCAAAATTGTGAATT
TTCCAGGCATACCTTAAGTCCACTCTACAAACTTTGATTGGATGTTTCATTCTTGTATCATAATGTGGAACCAACATT-G
TGATGATT------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------TTTTCCTCCATTATGCATCCATCTTTA----------------------------------------
----------------------------------------------------------GTACTTTTCAGTCGGTCCTGTA
TTACTGGTTCATACAGTATTTAATCACATGTTGCCAGTATTTTTGCTGGTGACGCGGTAGTCAAAATATGTACGCAGAGT
TAACCTCAGTTGGGTGGGGCAGGTTA--------AAGTCCTTTGGCTTGTATTTGGATCCATTTTTTTCTTTATTATTTA
AACACCTAGTTTTTCTTTTTTTCGTTTCCATTATTTTGATAGTCCAAGTCAAAACAAAAAGTCTGGAAATTAGACATTAT
AAGAAAGATGATGCTGGAAAGGTCAGTTTAGAACTAGATCTGCTATTTTTCTGCAAACATATGCAGTTAGGGACTCAATT
GAGGATCTTGGAGGAGTAG-CAAAAATCATGACATTGACATATTTTGAAGAAAAAAAAGTT-A-----------------
-------------------------------CAGTATGAAACATTAGGGGATGATTTACTGTTAGGTTTGACATAGTTTC
ACTTTGATGCCCCTTCCAATGCAGTATATATATCTTGGGAGGAAATCT--------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------
>chr5B_82
AAAC----------------------------------------------------------------------------
------------------AAAA--GATTATGTCTCCAATTACTTTGCGGTAACGTGATAT---AGTAGGCCTAAATAAAG
GGACGCTAATCTTCTTACGGCGCACGCTGTCTG-CTCGCTTCCCTCCCTCATCATAAAAAAGGAAAATAGGTGTCT----
--CTCTCGCTATCGACGCAGGCAAACCTCCGCAACACCAGCAAGA---AGAAGAAGAAGCAAAAGCGAGCGGACGAACCG
AGGAGAGGAATCAAGAGGTTGGTTTGTCGCTACCC-TAACCTGTTCCGAGACTCTCCACGAACGCTTTTCTGATCCCGAT
CGAGGCTTCGCTTGCGCTGTCGCTGCTGGCGGTCTCTTCCTTCGCCGTTTTCCGGCCGCGACA-------------GTCT
CGTCGGCGTGGGGTCATGAAGATCTT---------------------------------------CTCGCCGTCGATTGC
GGTCGATTTGAACGTGCCCGTGCTCTTTCCTCTCTCGTTCTTGGTTCCTGGCTACATATATATGTTAGGCAATTCTCGCA
GCACTAGTGCGATCAAGAGCTTTCGTTAGCGTGCTGCGATCTGCCCGATCATGTGAATCCTTGCTTTGCTT---------
-------------------------------------ATATACGTATGCTCCGGATATAGCAACGATGAGTTTGACGGCG
AACGGCGGATGACAGTATTGTAGTTTTGAACTTGGATTTTCCATCCTGTTTTATCTACTCCCTTCGGTCCTTTTTACTCT
GCTCGAT-------------------------------------------------------------------------
---------------------------------TTGTTTGAAATCATGTACTCTCTCCGTTCCATAATGTAAGATGTTTT
TTGACACTACACTAGAGTCAAAAAACGTCTTACATTATGGGGCGGAGGGAGTAGCACATATAACATTGTTGGGATCGTGT
TGATGGCATTGTTTTGTTGACCTTATTCTTTAATATCTTGACTTAGTGCACTTACTGTTGCTTGTAAATTGCC-------
---------------------ATTCTCATCCATTACGCTAACTTCTGCTGGATTTTTAATCGGTTTCTTTGTACAAGGAA
CATGGAGGGTTCCAGTTTGAGAGGCCCGGTAGATGATGGACTTATCTTGAAGACAGGCAAGGGTGCAGGCATTGGATTAG
CTGCTGGCAGCGTTTGGGGTTTGCTGGTTTCTATGCTGCACGATGGACCTAAGGTCGGCAGTAATGTCAAGTATCCTGAG
CTGGTTAGAACTGGCAAGGTTTGTGGAGGTTACGCAGGAACCTTGGCAATTCTTGGAGCTACATATGTAGGCGTAGAGCA
GTCTCTTGAAAGGGTCAGGGGGAAGAAGGACATCATTAATGGTGCTGTGGCTGGTTTTGCTGCGGGTGCAACTATGGGTT
TCAGAGGTAATTATCTATAC---------TAGTTGTTATGCTTAGCCTGCATTCCTTTTCCAAAAAAAAAAATGCTTAGC
CTGAATTTTCTAA---TTCGGTTAAATGACCGTCCTTGTGGATTATTTGCTTCCTTTTTCAGAATTCAAAATTGTGAATT
TTCCAGGCATACCTTAAGTCCACTCTACAAACTTTGATTGGATGTTTCATTCTTGTATCATAATGTGGAACCAACATT-G
TGATGATAATGTGGATATCTTCAACCGGTTTGGATGGCAGTCATGTAATAGGATAGGAAATTAGTTTACCTGTCTTATTC
TAGCCAGCCGGTTGTGGCGCATTGTTCTTGGCTAGTATGTGTTTCTAGCCTTTTGCGCTCTGTGTGAGCTGCCTTTTATC
TCCAGATTTGAGACTTTCGAACCTTTTGGACACCTATTTAGTTAATAAAGAGGGTTGTATGCATCGCTAGATGCAGAGGC
CGAGGAAACCCCCTTTTCGAAAAAAATGCATTCATCTTTAGTACTCCCTCCGTCCCAAAATAAGTGTCTCAACCTTAGTA
CAACTTTGTAGTACTAAAGTTAGTACAAAGTTAAGACACTTATTTTGGGACGGAGGGAGTACTTTACAGTCGGTCCTGTA
TTACTGGCTCATACAGTATTTAATCACATGTTGCCACTATTTTCGCTGGTGACGTGGTAGTCAAAATATGTACGCAGAGT
TAGCCTCAGTTGGGTGGGGCAGGTT--------CAAGTCCTTTGGCTTGTATTCGGATCCATTTTTCGCTTTATTATTTA
AACATTTAGTTTTTCTTATTTTCGTTTCCATTATTTTGATAGTCCAAGTCAAAACAAAAGGTGTGGAAATTAGACATTAT
AAGAAAGATGCTGCTGGAAA------TTCAGAACTATATCTGCTATTTTTCTGCAAACATATGCAGTTAGGGATTCAGTT
GAGGATCTTGGGGGAGTAG-CAAAAATCATGATATTGACATGTTTTGAGAAAAAAA------A-----------------
-------------------------------TAGTATGAAACATTAGGGGATGATTTACTGTTAGGTTTGACATAGTTTC
ACTTTGATGCCCCTTCCAATGCAGTATATAT--CTTGGGAGGAAATCTCCTCTTCCCTATGTTTCCTATTATCTTCCACG
ATGACGATGGCCCTACTATGCGTGACTCTTTCTTCAATTTGTTTGTTCGGAGTCGAAATTTACTATTACTACTGACCAGT
CTAACATTTTTATCCTTGTATG----TATATGCACAGCCGGGAGACTCCGGACACTCATTGTGTCAGGGTCTGCGCTCGC
TCTGACTTCGGTACTCTTGGATGTGACTGGAATGAGAACTACTGAGGAGGAAGGAAAAGTCC---ACCACTAAGTCAATG
TATCATCCTGAAGAGCTGTATCTACAACTTCACTCAAGCAGTTCCATGTTTCTGTTCT-AAGCATGCACAATACCAGAGG
AGTTTCTCTGAATGTAGTCTGTTCATAGTAGAGGTAGTAAAGGGATATGGTACCATGTGGTGGTTGCTCCTGATCTGTAA
ATTCATGTTTGAGGAGTACTTTTGGCATTTCATACGCGCTTTAGTAATCGCTGAAGTTCATGGTCGAAAGTGTTCAAGTA
CGATCTTGTCATCCCAAATTTTAATCGGGATGTTTGAATATAACATTGTTCTCCACTTATTTGGTGGATGCTTATTTTCA
CGAGTGTTA---TGACCCGATGACTGAGGCCATGTAGATTTCTTGTTTTATTTCTTCTATTAATGAGTTGCGGTGTTATC
TGTTGTGGTAGGGAGTAATTTATACCATCTCCATAGTGCAAAGTGTCTTAAATGGTTTCATTTATTAGCTTGTAGACTCA
TTTTCTCTTGAGAACCGTTATGTTATGGTAAACATATTTATGTTATCACAATCTTCTCTCTTCTCATTAACTACTTTTCA
CATAAGCAAATTTGCCTTGGTGCATTATGTTACTACTTCCTCCGTCACGGTTTAGAAGGCGCACTTGGAAATTCTCTGGG
ACCTGGGTGGTTATCTATTGGCTGTGAGATGGGTTAAAAAATAGCATTCACACTACGCATGCATATAGGAATAGTATATC
AGAGTACTACTTAGCTACTAGAAATAAATGCAATGCGTCCTAAACCTTGTCTATTGTGGAAACGCACGTAAATTTAACTG
TGCCTTCTAAACTGTGACGGAGGGAGTAGCTAAGTTACTCCCACTATGATCAGCCTCATGACTTCGTAACATTAAAAGTA
CATGATTTTTTTCTAGCTCGCATTAAAAATGCATTTCATTGTGATA-TTTTACACTGATGCACTCCCTCCATACAAAGTT
GTACTAAGTCAGCAACATTTATTTTGAGACGGAGGGGGTAGTATACATCACTATGTATTCATTTATTTTTGAAAAGGATA
CATCTCTATGTATGTTGTATTCTTCAATAGTTTTTAAAAACTCGAGTTGATTTTAAATTTTTTTTGAAAATTTCGGGCTC
CAAAGAGCCCGGTGGCCAAAAAAATCCTCACTTGTTTGTATGATACTCCCTCTGTC
>chr3B_1755
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------------------------TTTACATTATTTTGATAGTCCAAGTCAAAACAAAAAGTCTGGAAAATAGACATTAT
AAGAAAGATGATGCTGGAAAGGTCAGTTTAGAACTAGATCTGCTATTTTTCTGCAAATATATGCAGTTAGGGATTCAGTT
GAGGATCTTGGAGGCATAG-AAAAAATCATGACATTGACATATTTTGAGAAAAAAA---TT-A-----------------
-------------------------------TAGTATGAAACATTAGGGGATGATTTACTGTTAGGTTTGACATAGTTTC
ATTTTGATGCCCCTTCCAATGCAGTATATAT--CTTGGGAGGAAATCTCCTCTTCCCTATGTTTCCTATTATCTTCCACT
ATGACGATGGCCTTACTACCCGTGACTCTTTCTTCAATTTGTTAGTCCAGAGTCGAAATTTACTATTACTACTGACCAGT
CTAACATTTTTATCCTTGCATG----TATATGCATAGCCGGGAGACTTCGGACACTCATCATGTCAGGGTCTGCGCTCGC
TCTGACTTCGGTCCTCTTGGATGTGACTGGAATGAGAACTACTGAGGAGGAAGGAAAAGTTC---ACCACTAAGTCAATG
TATCATCCTGAACAACTGTATCTACAACTTCACTCAAGCAGTTCCATTATTCTGTT-T-AAGCATGCACAATACCAGAGG
AGTTTCTCTGAATGTAGTCTATCCATAGTAGAGATAGTAA----------------------------------------
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>chr5B_1756
--------------------------------------------------------------------------------
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-------------------------TTACATTATTTTGATAGTCCAAGTCAAAACAAAAAGTCTGGAAAATAGACATTAT
AAGAAAGATGATGCTGGAAAGGTCAGTTTAGAACTAGATCTGCTATTTTTCTTCAAATATATGCAGTTAGGGATTCAGTT
GAGGATCTTGGAGGCGTAGAAAAAAATCATGACATTGACATATTTTGAGAAAAAAA---TTTA-----------------
-------------------------------CAGTATGAAACATTAGGGGATGATTTACTGTTAGGTTTGACATAGTTTC
ATTTTGATGCCCCTTCCAATGCAGTATATAT--CTTGGGAGGAAATCTCCTCTTCCCTATGTTTCCTATTATCTTCCACT
ATGACGATGGCCTTACTACCCGTGACTCTTTCTTCAATTTGTTAGTCCGGAGTCGAAATTTACTATTACTACTGACCAGT
CTAACATTTTTATCCTTGTATG----TATATGCACAGCCGGGAGACTCCGGACACTCATCATGTCAGGGTCTGCGCTCGC
TCTGACTTCGGTCCTCTTTGATGTGACTGGAATGAGAACTACTAACGAGGAAGGAAAAGTCC---ACCACTAAGTCAATG
TGTCATCCTGAACAGCTGTATCTACAACTTCACTCAAGCAGTTCCATTATTCTGTT-T-AAGCATGCACAATATCAGAGG
AGTTTCTCTGAATATAGTCTGTCCATAGTAGAGATAGTAA----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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>chr5D_2091
--------------------------------------------------------------------------------
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-------------------------------------------AATCTCCTCTTCCCTATGTTTCCTATTATCTTCCACT
ATGACGATGGCCCTACTATGCGTGACTCTTTCTTCAATTTGTTAGTTCGGAGTCAAAATTTACTAT--------ACTAGT
CTAACATTTTTATCCTTGTATGTATATATATGCACAGCCGGGAGACTCCGGACACTCATCGTGTCAGGGTCTGCGCTCGC
TCTGACTTCGGTACTCTTGGATGTGACTGGAATGAGAACTACTGAGGA---AGAAAAAGTCC---AGCACTAAGTCAATG
TATCATCCTGAACAGCTGTATCTACAACTTCACTCAAGCAGTTCCATGTTTCTGTTCTAAAGCATGCACAATACCAGAGG
AGTTCCTCTGAATGTAGTCTGTTCATAGTAGAGATAGTAAAGGGATATAGTACCATGTGGCAGTTGCTCCACATCTGTAA
ATTCATGTTTGCAGAGTACTTTTCGCATTTCATACGTGCTTTAGTAATCGCTGAAGTTCATGGTCGAAAGTGTTCAAGTA
TGATCTTGTCATCCCAAATTTTAATCGGGATGTTTGAATATGACATTGTTCTCCACTTATTTGGTGGATGCTTATTTTCA
CGAGTGTTA---TGACCCGATGACTGAGGCCATCTAGTTTTCTTGTTTTATTTCTTCTATTAATGAGTTGTGGTGTTA--
-----TAGTAGGGAGTAATTTATACCATCCCCATAGTACAAAGTGTCTTAAATGGCTTCATTTATTAGTTTGTAGACTCA
TTT-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
>SNPs
---------S---------S------S--------------------S---S--------------------S-S-----
---SSSSSSS--------------------------------------------------SSS-----------------
----------------S----------S---------------S--------------------------S-----SSSS
SS-------------------------------------------SSS--------------------------------
-------S--------------------------------S------------S--------------------------
-----------------------------------------------------------------SSSSSSSSSSS--S-
----------S---------------------------------------------------------S-S---------
-------------------S-----S---SS-----------------------------S----------S--------
-----------------------S-----------------------------------------------SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------------------S-S
-------------S------------------------S------------------------S-S--------------
--------------------------------------------------------------------------------
--------------------------------------S-----------------------------------------
--------------------------------------------------------------------------------
---------------S-------S--------------------S--S---S--S--------------------S-S-S
-S---------------------------S------S--------------------S---------S------S-----
-----------------------S------------------------------------------S-------------
-------------------S---------------------S--------------------------------------
-----------------------------------S--------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------S------------------------------------
----------------------------------------------S-------------S-------------------
---------------S----------S----------------------S----------------------------S-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------S---------------------
---------------S---------SSSSSSSS-----------------------------------------------
-----------------------------------------------------------S--------------------
--------------------------------------------------------------------------------
------------------------------------------------S-S-SSS-SS-S--SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------------------
--------------------------S-----------S-----------------------------------------
-S---------------------------------------------------------------S--------------
---------------------------------------------------------S----------------------
-----------------------------------------------------------S-SSSS---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----S-----------------------------S--------S-----------------------------------
---------------------------------------------------S----------------------------
-SSSSSS-SSSS---------------------------------------------------S----------------
--S---------------------S---------------S---------------------S-----------------
------S--S-S-----S-------SS-----------------------------------------------------
----------------------SSS-S-SSS-SS-S-S-SS-SSSS---S-SSSSSSS--S-SS-SSSSS--SSS-SSSS
S-S-SSS-S-SSS-S-----S--SSS-S--SS-SSSSSSSSS--S-S-SSSS-SS-SS-SSSSSS-SSSSSS-SS--SSS
SSSSSSSSSSS-SS-SSS--SSSSSS------------------------------------------------------
---------------------------------S------S--------S-----------------S------------
----SS------S----------S--------------------S-S--------S----S--------SS---------
---------------------------------S-------S--------------------------------------
----------------S--------------------------S----------S-------------------S-----
---S----S--------------------------------------S----S---
>forward_719
--------------------------------------------------------------------------------
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-----------------------------------------------------------CGTGCTTTGCTTATTGCGGT-
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>reverse_2348
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---------------------------ACGGTTCAAGTCCTTTGGCT---------------------------------
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--------------------------------------------------------
>forward_734
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------GCGGTC
TTCTCGTAGGATCC------------------------------------------------------------------
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>reverse_2802
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-CGACGATGGCCCTACTATGC-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
>forward_2747
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------TGCCCCTTCCAATGCAGTAC-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
>reverse_3640
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------TACACGGACGATGCTTCCTG---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
