>input_sequence_53683
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----------ATGCCGGCCT---CCATCGCGGTCTTCCTGTGCCTGCTCT------------CGGCG------GCCGCGG
CCATGGACGCGGCGGAGAGGGAGACGCTGTTCCTCGTCATGGACGCCGTGTCCTCCGACCGGGACTGGCGCTCCGAGAG-
--CCCCGACCCCTGCGGCGCGCCCTGGCCGGGGCTCGAGTGCAAGCCGGCGCCGGGCACCGCGGC------GCCGCTGCA
CGTCACGCGGCTGGACTTCGGCGTGGAGCCCAACCCGTCGTGCAAGGACGCGGCCGCCTTCCCGCCCCAGGTGCTCA---
CCCTGCCCCGCCTCCAGTCCCTCTTCTTCGTCAACTGCTTCAACAACCCGGCCGCCGTCACCGCCCTCGTCCTCCCTT--
-CCGCCAACCTCTCGTCCTCCACCCTGCAGCAGCTCAGCATCCGGGCCAACCCCTCGCTGTCCGGCGTCATGCCGCCGCA
GCTCGTCAGGCTCAGGTCCCTCCAGGTGCTCACCATCTCCCAGAACGGCCTCGTCCGTGGCGAGATCCCGCGGGGCATCG
GCGAGCTCAGGTCGCTCGTGCACCTCGACCTCAGCTACAACTCCCTCTCCGGGCCGGTGCCGACCCGGATCAGCGAGCTC
AAGGGCTTGGTCGGCCTCGACCTCAGCTACAACGCGCTGTCCGGCCCCATCCCTGGCCGGATCGGCGACCTGCGCCAGCT
GCAGAAGCTGGACCTGAGCTCCAACAACCTCACCGGCGGCATTCCGGACACCGTCGCCAACCTCACCTCCCTCACCTTCC
TGGCGCTAAGCAACAACGGCCTCAATGGGTACTTCCCTCCTGGCCTCTCCGCTCTCCGGAATCTCCAGTACCTGATCATG
GACAACAACCCGATGGGCGTCCCGCTGCCGTCCGAGCTCGGCAGCCTCGCCCGTCTTCAAGAACTCCGGCTAGCCGGCTC
CGGCTACTCGGGGCCGATACCGGCGGCGTTTGGACAGCTGGCGAGCCTGACGACGCTTTCGCTCGAAGACAACAACCTCA
CGGGCGAGATTCCCGCGGGGCTGAGCAGGCTGCACAGGATATACCACCTGAACCTGAGCAACAACGGGCTGGGCGGGGCC
GTGCCGTTCGACGGCGCGTTCCTGCGGCGGCTCGGCCGCAACCTCGACCTCAGCGGCAACTCGGGGCTGTGCCTGGACGT
CGTGCGGGACGTCGGCG---TCGGCGTTGCTGCCTGCCATGGCGGCGGCGGCGGTGATGGTTCCTTGGCGCGTGACTCGG
TGAGCAGTGCTGCCAGGGGAGTGATGGCGAGAGGCTCCACGGACAGTTTCCGGTTTCGCCTGCTCGGCCCAGTGTGCGTG
GTAGTGATCTCCTGCATCTTTTTTCCTCCGAATGGGTATGCGTAG-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>chr3A_1_TraesCS3A01G282900
TGAATTTTTCAAAAAATCGGCATCCATAGAGGCCGAGAGCTAACTAAAATGCCACTCTCAGTATGAGCTTCTTTAATGCC
TTCTGAAATGTTTGAGTGCTACTACCTCTGAGTTTAAGCTGAAGCGTCAAAACGTGTTACATTTAGAAAGAAAGGGTGTA
CTGCATTTTGATTTTGATATTTACATCTGACTATCTGAGTTCCTTTTGTTTCGATGCTGCTAGTACTCCCTCCGTCCGAA
AATACTTGTCATTGAAATGGATGTATCTAGATGTTTTTTAGTCTAGATACATCCATATTCATCCATTTTGATGACAAGTA
ATTCTGGATGAAGGGAGTATTATTTTTGTTAATGCTATGTTTGCTATTTGCGGAGATGGCTTATGAACTTCTGCCGACCG
----AACAAAACATGTTTCCTTTCTGTCACTTACACTTAAATTAAGTACCCTTCTCTGCTAGCTGTGTCAGCAGCACCAC
GCCTTTCTGATGGATGAACACCAACACGCAGG----------CATGCCATGCAGGTATTACTCGTCCAAAACTCGCAGCG
CTGAGGC------------------CCCTCTCTCTTGTACTTGGCCTGATAACCCAGTTTTACCCGGCGACTTAACTAGT
GCCTGACCAGTCAGCCTATCTTATGTGTAACAGTAGTAGTACTGCTAGCCCCCGTCCTTCGGTAGCGAGGACCATATGCG
CGGTTCCTTGTGGAAAACATGACGTGCCACACTGCGTGCACTGCGCTTTGGTGCCTCCCACTGTGCGGACAGCAGCCTCC
TGTGCGCTGCTCGTACCGCTAAATCGTGCGAGGCCGAGGTTCTTCCCGGCGTCCCGAACGCAAACC--TCTCTGCACGAT
GCTCTCTCTGCCCATGGCCGGTCACGTCACGTCAATCACCG----CACCGCGCACTGGCCCCATCTGCGTCGCCCACGCG
GCCGACCCCTGCTGCTCTTAAACCCCGGGAAAACCACGCTCGTCAAACGCATAGCCTCGGAGCAAAACGGACG-------
-----CCACGATGCCGGCCT---CCATCGCGGTCTTCCTGTGCCTGCTCT------------CGGCG------GCCGCGG
CCATGGACGCGGCGGAGAGGGAGACGCTGTTCCTCGTCATGGACGCCGTGTCCTCCGACCGGGACTGGCGCTCCGAGAG-
--CCCCGACCCCTGCGGCGCGCCCTGGCCGGGGCTCGAGTGCAAGCCGGCGCCGGGCACCGCGGC------GCCGCTGCA
CGTCACGCGGCTGGACTTCGGCGTGGAGCCCAACCCGTCGTGCAAGGACGCGGCCGCCTTCCCGCCCCAGGTGCTCA---
CCCTGCCCCGCCTCCAGTCCCTCTTCTTCGTCAACTGCTTCAACAACCCGGCCGCCGTCACCGCCCTCGTCCTCCCTT--
-CCGCCAACCTCTCGTCCTCCACCCTGCAGCAGCTCAGCATCCGGGCCAACCCCTCGCTGTCCGGCGTCATGCCGCCGCA
GCTCGTCAGGCTCAGGTCCCTCCAGGTGCTCACCATCTCCCAGAACGGCCTCGTCCGTGGCGAGATCCCGCGGGGCATCG
GCGAGCTCAGGTCGCTCGTGCACCTCGACCTCAGCTACAACTCCCTCTCCGGGCCGGTGCCGACCCGGATCAGCGAGCTC
AAGGGCTTGGTCGGCCTCGACCTCAGCTACAACGCGCTGTCCGGCCCCATCCCTGGCCGGATCGGCGACCTGCGCCAGCT
GCAGAAGCTGGACCTGAGCTCCAACAACCTCACCGGCGGCATTCCGGACACCGTCGCCAACCTCACCTCCCTCACCTTCC
TGGCGCTAAGCAACAACGGCCTCAATGGGTACTTCCCTCCTGGCCTCTCCGCTCTCCGGAATCTCCAGTACCTGATCATG
GACAACAACCCGATGGGCGTCCCGCTGCCGTCCGAGCTCGGCAGCCTCGCCCGTCTTCAAGAACTCCGGCTAGCCGGCTC
CGGCTACTCGGGGCCGATACCGGCGGCGTTTGGACAGCTGGCGAGCCTGACGACGCTTTCGCTCGAAGACAACAACCTCA
CGGGCGAGATTCCCGCGGGGCTGAGCAGGCTGCACAGGATATACCACCTGAACCTGAGCAACAACGGGCTGGGCGGGGCC
GTGCCGTTCGACGGCGCGTTCCTGCGGCGGCTCGGCCGCAACCTCGACCTCAGCGGCAACTCGGGGCTGTGCCTGGACGT
CGTGCGGGACGTCGGCG---TCGGCGTTGCTGCCTGCCATGGCGGCGGCGGCGGTGATGGTTCCTTGGCGCGTGACTCGG
TGAGCAGTGCTGCCAGGGGAGTGATGGCGAGAGGCTCCACGGACAGTTTCCGGTTTCGCCTGCTCGGCCCAGTGTGCGTG
GTAGTGATCTCCTGCATCTTTTTTCCTCCGAATGGGTATGCGTAGTGTTGACAGGATTCGTGTGTTGGTTACTGCCCATG
TACGTACTTGTGTGTTGTAAAAGTTTTGTAATGCTAATTTGTCTACGGCGAGGCTTGTAGCAGAGTTGT----AGAAAGC
TGTTGACTCTCAGGCTCGAGCACGGCGGTTTATCAGTCGCCGTAAGTTCATTTCCAAAGCGCCCCCTCCGACGTGCTG-C
GCAATCTATCGAGGGCCTATATTGGATCCGCCGAGCAGTTCAGACATGCT---TTTTCACGAAAAACCGAGATAAACTGG
GGC-TTTGCGGGAGTCCGAATAGCAGACACGTAGACCTGGA-------------------------------ACCGTGCG
CCTCCATGTTCTTCTTCGTTTTTTCTCTCTTGTCCTCGCCACCGCT----C-ACCATCCCGGCCGTCCC------GCCAC
ACCCCTGGCA----GAACTCGACGAGTCTGTCACCTTTAACGGTACACTCTAACTCCAAGCCGCTTCTCTGTCAGCGTTC
CACACATCTCCTTCGACCGTCGCGCAGGTACCGCCAGCTCCTACGATACTCACAT-------------------------
--------------------------------------------------------------------------------
---------------------------------------CTCCTTCGACCGTCGTGCAGGTACCGCCAGCTCCTACGATA
CTCACCTTGCCTGGCAACTTTTCGACAAAATGCCCATGCTAAGAGGATGTTTGGATTGGTGTTG----------------
------------TGCCCGACCAAAACTTTGGCGTTGACCAAAGGGCTGGCAACCATTTGGATGGGCTCCAATTATTTGGC
TCGCCCCAACACCAATAAGCTTTAGCATTCAATTCGTGACCAACTTAGGCTGGTCACAATGGGCAAGAACATAAGCTAGT
AACTTCACACTTTCCTAGACTATGTTACTACCACCATAGTGGGTAGGAACATCTATGTAGTGCCATGCAACGATGTATTT
ATTAGGTTATAGACTCATTGTTTCTTGGAGTGTGTGATGTTCCGGTAACTTAGCTAGTTACCACAAGCACATCTCTCTTC
ACTAAATACGTGCCACATAAGAAAAGTTGTATTGAAATGTGTGATGTTACTCTTAAGTTCCTCCCCACTGTG
>chr3B_332
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------AGGGAGTACTATTTATGTTAATGTTGGGTTTGCTATTTGCGGAGATGGCTTATGAACTTGTGCTGACC-
----AACAAAACATGTTTCCTTTGCTGCTACTT-ACTTAAATTAAGTACCCTTCTCTGCTAGCTGTGTCAGCAGCACCAC
ACCTTTGAGATGGATGGACACCAACACGCAGG----------CATGCCATGCAGGTATTACTCGTCCAAAACTCGCTGTG
TAATAAGTTATGGAGCGAC--GGGTCCCTCTCCTTTGTACTTGGCCTGATAAGCCAGTTTTACTCAGTGACTTAACTAGT
GCCTGACCAGTCAACTTATCTTATGT-----AGCAGTGGTATTGCTAGCCCTGTCCTTCT-GTAGCGAGGACCATATGCG
CGGTTCCTTGTGGAAAACATGACGTGCCACACTGTGTGCACTGCGCTTTGGTGCCTCCCACTGTGCAGACAGCAACCTCC
TGTGCGCTGCTCGTACCACTAATTCGTGTGAGGCCGAGGTTTTTCCCGGCGTCCCAAACGCAAGCCTTTCTTTGCACGAT
GCTCTCTCTGGCCATGGCCGGTCACGTCAGGATCGTCACGTCAATCACCGCGCACTGGCCCCATCTGCGTCGCCCACGCG
GCCGAGCTCTGCTGCTCTTAAACCCCGGGAAAACCACACTCATCAAACGCAAAGCCCCGGAACGGAACGCACTGGCGAAT
GGATACCACGATGCCGGCCT---TCATTGCGGCCTTCCTGTGCCTGCTCTCGCTGGCCGCCGCGGTG------GCGGCGG
CCATGGACCCGGCGGAGAGGGAGACGCTGTTCCTCGTCATGGACGCCGTCTCCTCCGACCGGGACTGGCGCTCCGAGAG-
--CCCCGACCCCTGCGGCGCGCCCTGGCCGGGGCTCGAGTGCAAGCCGGCGCCCGGCAGCGCGGC------GCCGCTGCA
CGTCACGCGGCTGGACTTCGGCGTGGAGCCCAACCCGTCGTGCAAGGACGCGGCCACCTTCCCACCCCAGGTGCTCA---
CCCTGCCCCGCCTCCAGTCCCTCTTCTTCGTCGACTGCTTCAACAACCCGGCCGCCGTCACCGCCCTCGTCCTCCCTT--
-CGGCCAACCTCTCGTCCTCCACCCTGCAGCAGCTCAGCATCAGGGCCAACCCGTCGCTGTCCGGCGTCATGCCGCCGCA
GCTTGTCAGGCTCAGGTCCCTCCAGGTGCTCACCATCTCCCAGAACGGCCTCGTCCGTGGTGAGATCCCGCAGGGCATCG
GCGATCTCAAGTCGCTGGTGCACCTCGACCTCAGCTACAACTCCCTCTCCGGGCCGGTGCCGAGCCGGATCAGCGAACTC
AAGGGCTTGGTCGGCCTGGACCTCAGCTACAACGCGCTGTCCGGCCCCATCCCCAGCCGGATCGGGGACCTGCGCCAGCT
GCAGAAGCTGGACCTGAGCTCCAACAATCTCACCGGCGGCATTCCGGACACCATCGCCAACCTCACCTCCCTCACCTTCC
TGGCGTTAAGCAACAACGGCCTCAATGGGCACTTCCCCCCTGGCCTCTCTGGTCTCCGGAACCTCCAGTACCTGATCATG
GACAACAACCCAATGGACGTCGCGCTGCCGTCTGAGCTCGGCAGCCTCGCCCGTCTTCGAGAACTCCGGCTAGCCGGTTC
CGGCTACTCGGGGCCGATACCGGCGGCGTTTGGTCAGCTGGCGAGCCTGACGACGCTTTCGCTCCAAGACAACAACCTCA
CGGGTGAGATTCCCGCGGGGCTGAGCAGGCTGCACAGGATATACCACCTGAACCTGAGCAACAACGGGCTGGGCGGGGCC
GTGCCGTTCGACGGCGCGTTCCTGCGGCGGCTCGGCCGCAACCTCGACCTCAGCGGCAACTCGGGGCTGTGCCTGGACGT
CGTGCGGGACGTCGGCG---TCGGCGTTGGTGCCTGCCATGGCGGCGGCGGCGGTGATGGTTCGTTGGCGCGTGATTCGG
TGAGCAGTGCTAC---GGGAGTGATGGCGAGGGGCTCCACGGACAGTTTCCGGTTTCGCCTGCTCGGCCCAGTGTGCGTG
GTAGTGATCTCCTGCATCTTTTTTCCTCCGAATGAGTATGCGTAGTGTTGACAGAATTCGTATGTTGGTTACTGCCCATG
TACGTACTTGTGTGTTGTAAAA---TTGTAATGCTAATTTGTCTACGGCGAGGCTTGTAGCAGAGTTGTACGTAGAAAGC
TGTTGACTCT----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------TCTCCATTTTTTTTTCTCTCTTGTCTTCTTCGCCACCGCTCC-ACCATCCCGGCCGTCCCCGTCCCGCCAC
ACCCTTGCCGCAAGGAACTCGATGAGTCCGTCACCTTCAGCGGTACACTTGGGCTCCAAGCCGCTTCTCCGTCAGCATTC
CACACCTCTCCTCCGAACA-------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------TCGCGCAAGTACCGTTAGCTCCTACGATA
CTCGCCTTGCCCGGCAACTTTTCGGCAAAATGCCCGTGCTAAGAGGACTTTTGGATTGGTGTTGATGGTTA---------
--------------CCCGACCCAAACTTTGGGGTCGACCAAAGGGTTGGCAACTGTTTGGATGGGCTCCAATTATTTGGC
TCGCCCCAAGAGCAGCAAGCTTTAGCATTCAATTCGCGACCAACTTA---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>chr3D_343
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------TTTCTGTTAATGTTGGGTTTGCTATTTGCGGAGATGGCTTATGAACTTGTGCTGAGCA
GCCAAACAAAACATGTTTCCTTTGCTGCCACTT-ACTTAAATTAAGTACCCTTCTCTGCTAGCTGTGTCAGCAGCACCAC
ACCTTTCTGATAGATGAACACCAACACGCAGGCATGCCATGCCATGCCATGCAGGTATTACTCGTCCAAAACTCGCAGTG
TAATAAGTACTAGCAGCGTCGGGGTCCCTCTCTCTTGTACTTGGCCTGATAACCCAGTTTTACTCAGCGACTTAACTAGT
GCCTGACCAGTCAACTTATCTTATGT-----AACAGTAGTACTGCTAGCCCTGTTCTTCT-GGAGCGAGGACCATATGCG
CGGTTCCTTGTGAAAAACATGACGTGCCACACTGTGTGCACTGCGCTTTGGTGCCTCCCACTGTGCAGACAGCAGCCTCC
TGTGCGCTGCTCGTACCACTAAATCGTGCGAGGCCGAGGTTTTCCCCGGCGTCCCGAACGCAAACCTTTCTTTGCACGAT
GCTCTCTCTGCCCATGGCCGGTCACGTCACGTCAATCACCG----CACCGCGCACTGGCCCCATCTGCATCGCCCACGCG
GCCGAGCCCTGCTGCTCTTAAACCCCGGAAAAACCACACTCATCAAACGCATAGCCCCGGAACGGAC-------------
----ACCACGATGCCGGCCT---CCATCGCGGTCTTCCTGTGCCTGCTCT------------CGGTGGCCAACGCGGCGG
CAATGGATCCGGCGGAGAGGGAGACGCTGTTCCTCGTCATGGACGCCGTCTCCTCCGACCGGGACTGGCGCTCCGAGAG-
--CCCCGACCCCTGCGGCGCGCCCTGGCCGGGGCTCGAGTGCAAGCCGGCGCCCGGCACCGCCGC------GCCGCTGCA
CGTCACGCGGCTGGACTTCGGCGTGGAGCCCAACCCGTCGTGCAAGGACGCGGCCACCTTCCCGCCCCAGGTGCTCA---
CGCTGCCCCGCCTCCAGTCCCTCTTCTTCGTCGACTGCTTCAACAACCCGGCCGCCGTCACCGCCCTCGTCCTCCCTT--
-CCGCCAACCTCTCGTCCTCCACCCTGCAGCAGCTCAGCATCCGGGCCAACCCGTCGCTGTCCGGCGTCATGCCGCCGCA
GCTCGTCAGGCTCAGGTCCCTCCAGGTGCTCACCATCTCCCAGAACGGCCTCGTCCGTGGTGAGATCCCGCAGGGCATCG
GCGAGCTCAAGTCGCTGGTGCACCTCGACCTCAGCTACAACTCCCTCTCCGGGCCGGTGCCCAGCCGGATCAGCGAGCTC
AAGGGCTTGGTCGGCCTGGACCTCAGCTACAACGCGCTGTCCGGCCCCATCCCCAGCCGGATCGGCGACCTGAACCAGCT
GCAGAAGCTGGACCTGAGCTCCAACAACCTCACCGGCGGCATTCCGGACACCGTCGCCAACCTCACCTCCCTCACCTTCC
TGGCGCTAAGCAACAACGGCCTCAATGGGCACTTCCCCCCTGGCCTCTCCGGTCTCCGGAACCTCCAGTATCTGATCATG
GACAACAACCCGATGGACGTCCCGCTGCCGTCTGAGCTCGGCAGCCTCGCCCGTCTTCAAGAACTCCGGCTAGCCGGCTC
CGGCTACTCGGGGCCGATACCGGCGGCGTTTGGACAGCTGGCGAGCCTGACGACGCTTTCGCTCGAAGACAACAACCTCA
CGGGTGAGATTCCCGCGGGGCTGAGCAGACTGCACAGGATATACCACCTGAACCTGAGCAACAACGGGCTGGGCGGGGCC
GTGCCGTTCGACGGCGCGTTCCTGCGGCGGCTCGGCCGCAACCTCGACCTCAGCGGCAACTCGGGGCTGTGCCTGGACGT
CGTGCGGGACGTCGGCG---TCGGCGTTGGTGCCTGCCATGGCGGCGGCGGCGGTGATGGTTCCTTGGCGCGTGACTCGG
TGAGCAGTGCTGCCAGGGGAGTGATGGCGAGGGGTTCCACGGACAGTTTCCGGTTTCGCCTGCTCGGCCCAGTGTGCGTG
GTAGTGATCTGCATTT--TTCTTTCCTCCGAATGAGTATGCGTAGTGCTGATAGGACCA-----------ACTGCCCATG
TACGTACTTGTGTGTTGTAAAA---TTGTAATGCTAATTTGTCTACGGCGAGGCTTGTAGCAGAGTTGT----AGAAAGC
TGTCGACTCTCAGGCTCGAGCACGGCGGTTTATCAGCCGCCGTAAGTGCATTTCCAAAGCGGCCCCTCGGACGTGGTTAC
GCAATCTATCGAGGGCCTGTA-TGGATCCGCCGAGCAGTCTCGACGCACTTTCTTTTTTTGAAAAATCAAGACAAACTAG
AAGTTTTGCGGGAGTTCGGACAATAGACACGATAGAATTCGAACTCCTCGATCCACCCAGAACCCCTCCTGGACCGTGCG
CCTCCATACTCTTCTTTGTTTTTTCTCTCTTGTCTTCGCTACCGCT----CTATCACCCCAGCTGTCCT------GTCAC
ACCCCAACC----GGAACTCAACGAGTCTGTTACCTTTAACGGTACACTTGGGCTACAGGCCGCTTCTCCGTCAGCGTTC
CACACCTCTCCTCCGACCCAGTGGCGGAGGCAGGGGGTGCTGGCAGGGGCCAAGGCCCCCCCTATGCTCTCACAAATACA
TCTATATGTACTCCTAATTTTTCATTTGTCAGACAAAATTAGCTAGGTTTAGATGATTTGGCCCCTCTAACATATATGAC
ATGTTTAGCCCCCTCTATATTCAGTTTCTGGCTCCGCCACTGCTCCGACCGTCGCGCAGGTACCGTCAACTC---CGATA
CTCACCTTGCCCGACAACTTTTCGGCAAAATGCCTGTGCTAAGAGGATGTTTGGATTGGTGTTGATGGCTGGTTTGGATT
GGTGTTGATGGCTGCCTGGCCAAAACTTTGGCGTTGACCAAAGGGTTGGCAACCGTTTGGATGGGCTCCAATTATTTGGC
TCGCCC-AAGACTAGCCAGCTTTAGCATTCAATTCGCGAGCAACTTA---------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------
>chr1D_997
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------CACGATGCCGGCCACCGCCGTCGCGCTCCTCCTCTGCTCCCTCCTCGCCGTGGCCGGCGCC------------G
CCATGGACCCGGCCGAGCGGGAGGCGCTGCTGCGCGTCATGGAGGCCGTCTCCTCCGACCGCGACTGGCGCTCCTCCTCG
GCCCCCGACCCCTGCGCCGCGCCCTGGCCGGGGCTCGAGTGCAA------GCCGGACGCCGCCGACAAGCGGCTGATGCG
CGTCACCCGGCTCGACTTCGGCGTGCCGCCCAACCCGGCCTGCAGGGAGGCCGCGGCGTTCCCGACCCACGCCTTCTCCG
CGCTGCCCCACCTCCAGTCGCTCTTCCTCGTCGACTGCTTCAAGAACCCCGCCAAAACCGCCACGCTCGCCCTCCCGCCC
GCCGCCAACCTCTCCGCGTCCCGCCTGCAGCAGCTCAGCATCCGCTCCAACCCCTCGCTGTCCGGCACGCTGCCGCCGCA
GCTCGCCGGCCTGCGGTCGCTGCAGGTGCTCACCGTCTCCCAGAACCCGCTCGTCCGCGGTGAGGTCCCGCGGGGCATCG
GCGAGCTCGCCGGCCTCGTCCACCTCGACCTCAGCTACAACTCGCTCACGGGCCCGATACCGGCGCGGATCGGCGAGCTC
CGGAGCCTCCAGGGCCTCGACCTCAGCTACAACTCCTTCTCGGGCCCCATCCCGAGCAAGCTCGGCCGGCTGGCGCAGCT
GCAGAAGCTGGACCTGAGCTCCAACAACCTCACCGGCGGCGTCCCGGCCACCTTCTCCGGCCTCAGCTCCCTCACCTTCC
TGGCGCTGAGCAACAACGGCTTGAGCGGCCGCCTGCCCGCGGGCCTCGCCGGCCTCCGGGACCTCCAGTACCTGATCATG
GAGAACAACCCGATGGGCGTGCCGCTGCCGCCGGAGCTGGGCGGCATCGCGCGGCTGCAGGAGCTCCGGCTGGCCAACTC
GGGCTACTCGGGGTCCATCCCGGAGACGTTCGGGCGGCTGACGAGCCTGACGACGCTGTCGCTGCAGAACAACAACCTGA
CGGGCAGGATCCCGGCGGGGCTGAGCCGGCTGAAGCGCATGTACCACCTGAACCTGAGCAAGAACGGGCTGGACGGCGCC
GTGCCGTTCGACGGCGCGTTCCTCCGGCGGCTCGGCCGGAACCTCGACCTGAGCGGCAACCCGGGGCTGTGCGTGGACG-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>chr1A_997
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------CACGATGCCGGCCACCGCCGTCGCGCTCCTCCTCTGCTCCCTCCTCGCCGTGGCCGGCGCC------------G
CCATGGACCCGGCCGAGCGGGAGGCGCTGCTGCGCGTCATGGAGGCCGTCTCCTCCGACCGCGACTGGCGCTCCTCCTCG
GGCACCGACCCCTGCGCCGCGCCCTGGCCGGGGCTCGAGTGCAA------GCCGGACGCCGCCGACAAGCGGCTGATGCG
CGTCACCCGGCTCGACTTCGGCGTGCCGCCCAACCCGGCCTGCAGGGAGGCCGCGGCGTTCCCGACCCACGCCTTCTCCG
CGCTGCCCCACCTCCAGTCGCTCTTCCTCGTCGACTGCTTCAAGAACCCCGCCAAAACCGCCGCGCTCGCCCTCCCGCCC
GCGGCCAACCTCTCCGCGTCCCGCCTGCAGCAGCTCAGCATCCGCTCCAACCCCTCGCTGTCCGGCACGCTGCCGCCGCA
GCTCGCCAGCCTGCGGTCGCTGCAGGTGCTCACCGTCTCCCAGAACCCGCTCGTGCGCGGCGAGGTCCCGCGGGGCATCG
GCGAGCTCGCCGGCCTCGTCCACCTCGACCTCAGCTACAACTCGCTCACCGGCCCCATCCCGGCGCGGATCGGCGAGCTC
CGGAGCCTCCAGGGCCTCGACCTCAGCTACAACTCCTTCTCGGGCCCCATCCCGAGCAAGCTCGGCCGGCTCGCGCAGCT
GCAGAAGCTGGACCTGAGCTCCAACAACCTCACGGGCAGCGTCCCGGCCACCTTCTCCGGTCTCAGCTCCCTCACCTTCC
TGGCGCTGAGCAACAACGGCTTGAGCGGCCGCCTGCCCGCGGGCCTCGCCGGCCTCCGGGACCTCCAGTACCTGATCATG
GAGAACAACCCGATGGGCGTGCCGCTGCAGCCCGAGCTGGGCGGCATCGCGCGGCTGCAGGAGCTGCGGCTGGCCAACTC
CGGCTACTCGGGGTCCATCCCGGAGACGTTTGGGCGGCTGACGAGCCTGACGACGCTGTCGCTGCAGAACAACAACCTCA
CCGGGCGGATCCCGGCGGGGCTGAGCCGGCTGAAGCGCATGTACCACCTGAACCTGAGCAAGAACGGGCTGGACGGCGCC
GTGCCGTTCGACGGCGCGTTCCTCCGGCGTCTCGGCCGGAACCTCGACCTGAGCGGCAACCCGGGGCTGTGCGTGGACGA
CCGGGCCGCCACGAAGGAGATCGGCGTGGGCGTCTGCGGTGGCGGCGACGGC----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>chr1B_1041
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------CGGCGCC------------G
CCATGGACCCGGCCGAGCGGGAGGCGCTGCTGCGGGTCATGGAGGCCGTCTCCTCCGACCGCGACTGGCGCTCCTCCTCG
GGCACCGACCCCTGCGCCGCGCCCTGGCCGGGGCTCGAGTGCAA------GCCCGACGCCGCCGACAAGCGGCTGATGCG
CGTCACCCGGCTCGACTTCGGCGTGCCGCCCAACCCGGCCTGCAGGGAGGTCGCCGCGTTCCCGACCCACGCCTTCTCCG
CGCTGCCCCACCTCCAGTCGCTCTTCCTCGTCGACTGCTTCAAGAACCCCGCCAAAACCGCCGCGCTCGCCCTCCCGCCC
GCCGCCAACCTCTCCGCGTCACGCCTGCAGCAGCTCAGCATCCGCTCCAACCCCTCGCTGTCCGGCACGCTGCCGCCGCA
GCTCGCCAGCCTGCGGTCGCTACAGGTGCTCACCGTCTCTCAGAACCCGCTCATCCGCGGCGAGGTCCCGCGGGGCATCG
GCGAGCTCACCGGCCTCGTCCACCTCGACCTCAGCTACAACTCGCTCACGGGCCCCATCCCGGCGCGGATCGGCGACCTC
CGGAGCCTCCAGGGCCTCGACCTCAGCTACAACTCCTTCTCGGGCCCCATCCCGAGCAAGCTCGGCCGGCTGGCGCAGCT
GCAGAAGCTGGACCTGAGCTCCAACAACCTCACCGGCGGCGTCCCGGCCACCTTCTCCGGCCTCAGATCCCTCACCTTCC
TGGCGCTGAGCAACAACGGCTTGAGCGGCCGCCTGCCCGCGGGCCTCGCCGGCCTCCGGGACCTGCAGTACCTGATCATG
GAGAACAACCCGATGGGCGTGCCGCTGCCGCCCGAGCTGGGCGGCATCGCGCGGCTGCAGGAGCTGAGGCTGGCCAACTC
CGGCTACTCGGGGTCTATTCCGGAGACGTTCGGGCGGCTGACGAGCCTGACGACGCTGTCGCTGCAGAACAACAACCTGA
CGGGCAGGATCCCGGCGGGGCTGAGCCGGCTGAAGCGCATGTACCACCTGAACCTGAGCAAGAACGGGCTGGACGGCGCC
GTGCCGTTCGACGGCGCGTTCCTCCGGCGGCTCGGCCGGAACCTCGACCTGAGCGGCAACCCGGGGCTGTGCGTGGA---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS--------S-----S--------S-SS--------------------------------S---S----S
-----------------------SSSS-SSS-SS----------------------------------------------
S-----------------------------------------------------------------------------S-
SSSSSSS--------------------------------------------------------S-S--------------
-------------S-S----------SSSSS--S-----------------SSS--S-SSS-------------------
----------------------------------S-------------------------------S-------------
-----------------S-----------------------S-----------------------------S--------
--------------------------------------------------------------------------------
-----S-------------------------------S---S--------------S----S-SS----S--S-------
---------------------------------------------------------------------------S----
--------S----------------------------------------S------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------S-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------S----------------------------------------------------------------------
-----------------------------------------------------SS-------------------------
--------------------------------------------------------------------------------
-----------------------------S-------S-------------S---------S------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------S--------------------------------------------------
-------------------------------S------------------------------------------------
----------------------------------S--------------------------S------------------
----------------------SSS-------------------------------------------------------
------------------------------------S----------S-------------S------S------S-S--
------------------S--S-----------------SSS---SSS---------SSS------S-S---S-----S-
SSS------------S--S-S-SS-------SSSSSS-SSS---------------------------------------
-------SS-------S-----------------S---------------------------------------------
-------S-S---------------------------------------SSSS----------------S----------
-----S------S-----SSSSS--S-SSS-S-SSS-SS-SSS-SSSSSS--SSS-------------------------
--------------------------------------------------------------------------------
-----------------------------------------S--S---------S----------S--------------
-----------S------------S----------S--------------------------------------------
---------------------------------------------S--------S-------------------------
---------S----SS--------------------S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_241
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------AGTACTCCCTCCGTCCGAA
A-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>reverse_1870
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------TACTTCCCTCCTGGCCTCTC-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>forward_1022
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------TCAAACGCATAGCCTCGGAG------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>reverse_2659
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------ATATTGGATCCGCCGAGCAG------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
