>input_sequence_53681
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--GGATAAGTGGCCCGAGTTCAATGCAAGCCCGTTCAACAGACCGGCTGTCTGGTATAACGATGAAAACGTGGAAGGGAT
ACAGCTCGGTCCCTCTCCCTCGCACTACCTGGATTGGAAGTTCGAAACTCGCTCGGCAACATCTGCGCCATGGCGACCGA
ACAATCCCGATACGGCCACAGGAAGTTGATGGTAAGCTACGGCGGGAAGCTCCAGCGCTTCTCCGAAGGCGGCGGACCGC
AGTACATCGGCGGCGAGCACCAGGTCGTGAGTGTCAGCCAGTCCATCTCGCTGCAGGAGCTCCGCGACCGGCTAGCCACG
GCCGTGGGCTGCTTCAACATCGCTATCCAGTACGTCCGCCCCGGCAAGCCCCTGGACGCGCTCCACGATGTGGTGACCGC
TGGCGACGTCCGGGACCTGCTAGACTGGGTGCTATACCGGGACATGCATATCAAACTGCTCCGCGCAAACCCAGCGGACG
TCCCCCAAGTCCGGGTCTTCGTGGTCCGCGTGGATGGGCGGCCGCCGCTCCCCGAGGCGCTCTTCACTCCCGCTCCAAGC
ACGCTGGTCGCGGCGCCCACCGAGGCGCCGGTGTCTCTGTCCTCGCTCAAACGGCGAAGTGCGTCGGCGCCTTCGCTGTC
CGCAAAGTTGCCGGACGGCACGTCGGAGCTCCTCTCTCCGGCCCTCATCCATCGGAGCGTATCAGCGCCTTCCCTGTCGC
CGCCGTCGACGGGGCACGACACAACGTCTTCGACTACGACGACAACTGCCAGAGCACCCTGTCGCCGCCGTCGACGGGGG
ACGACACAACGTCTTCGTCGAAGACTGCCGGAAGCACCTGTGCGACCCAAGATGTCGCCCCCAACGCGGCAATGCAGAGG
AGTCTGGCGCGCCCTGCTCCGGTGTTCCTGGTGCCAGTAGCACCGGTCATAGTGTACCAGCCGGTGATCCCAGTGTACCA
GGTGTTCGTCGTGCGTGATTGTGCTGTTCACCGCCTCAATCAGATCAGGTAAATCTCACCGATTAATCATCGTATAGAGA
GT---ACAAACGTTATCGTCTTTTGATAAAAGAAAGTGTATTCTTATATGCAGGTGTCTACCAATTAGCTATGATATGGA
CAGTATTACTAAAGCCGCAGTACAAGGAGCCAACCAAGCTTTGGCGTGAAG-----------------------------
--------------------------------------------------------------------------------
----------------------------------------------------AACTCAATCTCAAGTTTATTATTATTAG
TGTTTTGGATTTGGATGCCGCAAGTGATAGAGTTTGGAG-------------------TATAAGAACGTTTAGCTGGC-A
TGACCATCCTATTTGGTCCATGTGTTTAAATTTTCCTCCTTTGGGCAATGTCAAAGTTTGATCTTTCACTTTCCCTTTGT
AAAAAAGTTTGATCTCTTTTTA----------------------------------------------------------
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>chr2D_1_TraesCS2D01G268800
ATACATTCACGTCAGGTTCACTCTCCTCCCTATATCTCAAAAACCCTATCCGATCTTGGGGGTGCTGCAGCAACGGGAGG
ACCTACTCCAGCCGCCGCCGCCGTCCCAGGCCAGTGCCGGTGGCGTCCTGAGGGGATCAGGACGTCCAGG-------CCA
CAACCTCTACATCGTCCATCAATCTCGCCTGCAACGAGCAAGCGATCATGTCGACCTCTGTGACACGTAAAGGATCCCTA
AACCCATCCCTGTTCATGTTATCTTGGGTGATCTAGATGCAATTTTATCATGTTGTTTGCATCCTAGTGATGCATTAGAA
CCAACAATTATCAGTAATCATCATGCCCCTTCATAAGCTTTTCCATAATTTGCCTCAAGAAGTTCCAGTCTA--------
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-------------------------------------------------------CCCTTCATAAGCTTTTGATAAATCC
AGTTTATAAGCACAGTAGCTCACTGAAAGGTCATTTCCATGATGAATACACTCAAAAGTAACTAGGGTATTATCAAGAAT
TCCTTGACTGCAGTTAATTAACATCCAAAACACCACTCGTACACAAGATTTTAGAGACGGTAATGTTACCTGGCTGACGT
TTGCCGAGAAAGGAGTGGCAAGCGAATGTCATTTGATGGCAGTTTTAGTTGTGAAGAAAAATCAAACGGCGGCAGTTTAA
ACAAAAATGTCTTCTCTGAAGAAATTGCCATGTCGCTGTGAAGAAATTGCCACCCCCTCAGAACTAAAATTGTCACCTAA
AACGTTCGCGTGTGCCACCCTGCCTGACGATCGTTCGCCAGTTACGAGCGTCCTTTAAAAATCGGCCAGCTCACACGCGT
ACATAGCCTCTTACCACACGTTGTACTATCCTTCCATGGCTGAGTACCACCCTGCACGTATCCGCCGTAGCCTCTTGCCA
CAAGTTGTATTCTTCCACGACT----------------------------------------------------------
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--------------------------------------------------------------------------GAGTAC
CACCCTGCACG---------------------------------------------------------------------
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-----------TATCCGCCGTAGCCTCTTGCCACACGTTGTATTCTTCTACGACGAAGTACCACCCTGCATGTGTCCGCT
TCGGATAAGTGGCCCGAGTTCAATGCAAGCCCGTTCAACAGACCGGCTGTCTGGTATAACGATGAAAACGTGGAAGGGAT
ACAGCTCGGTCCCTCTCCCTCGCACTACCTGGATTGGAAGTTCGAAACTCGCTCGGCAACATCTGCGCCATGGCGACCGA
ACAATCCCGATACGGCCACAGGAAGTTGATGGTAAGCTACGGCGGGAAGCTCCAGCGCTTCTCCGAAGGCGGCGGACCGC
AGTACATCGGCGGCGAGCACCAGGTCGTGAGTGTCAGCCAGTCCATCTCGCTGCAGGAGCTCCGCGACCGGCTAGCCACG
GCCGTGGGCTGCTTCAACATCGCTATCCAGTACGTCCGCCCCGGCAAGCCCCTGGACGCGCTCCACGATGTGGTGACCGC
TGGCGACGTCCGGGACCTGCTAGACTGGGTGCTATACCGGGACATGCATATCAAACTGCTCCGCGCAAACCCAGCGGACG
TCCCCCAAGTCCGGGTCTTCGTGGTCCGCGTGGATGGGCGGCCGCCGCTCCCCGAGGCGCTCTTCACTCCCGCTCCAAGC
ACGCTGGTCGCGGCGCCCACCGAGGCGCCGGTGTCTCTGTCCTCGCTCAAACGGCGAAGTGCGTCGGCGCCTTCGCTGTC
CGCAAAGTTGCCGGACGGCACGTCGGAGCTCCTCTCTCCGGCCCTCATCCATCGGAGCGTATCAGCGCCTTCCCTGTCGC
CGCCGTCGACGGGGCACGACACAACGTCTTCGACTACGACGACAACTGCCAGAGCACCCTGTCGCCGCCGTCGACGGGGG
ACGACACAACGTCTTCGTCGAAGACTGCCGGAAGCACCTGTGCGACCCAAGATGTCGCCCCCAACGCGGCAATGCAGAGG
AGTCTGGCGCGCCCTGCTCCGGTGTTCCTGGTGCCAGTAGCACCGGTCATAGTGTACCAGCCGGTGATCCCAGTGTACCA
GGTGTTCGTCGTGCGTGATTGTGCTGTTCACCGCCTCAATCAGATCAGGTAAATCTCACCGATTAATCATCGTATAGAGA
GT---ACAAACGTTATCGTCTTTTGATAAAAGAAAGTGTATTCTTATATGCAGGTGTCTACCAATTAGCTATGATATGGA
CAGTATTACTAAAGCCGCAGTACAAGGAGCCAACCAAGCTTTGGCGTGAAG-----------------------------
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----------------------------------------------------AACTCAATCTCAAGTTTATTATTATTAG
TGTTTTGGATTTGGATGCCGCAAGTGATAGAGTTTGGAG-------------------TATAAGAACGTTTAGCTGGC-A
TGACCATCCTATTTGGTCCATGTGTTTAAATTTTCCTCCTTTGGGCAATGTCAAAGTTTGATCTTTCACTTTCCCTTTGT
AAAAAAGTTTGATCTCTTTTTAATAAACAATGTGATAAATTTGTTTATATGTATCTAACATGCAGAGGTCAGGATAATAA
AACATTTCAATGTCTTG--AATAAAAATAGTACAAGTACTCTCAAACTAAAATATACTATTCACGACACTTATTTTAAAA
CGGAGTGAGTACTTAGTTAATCTCTCTCTCAATCTTTCCTTTCTCCTCTTCTTCTATTACCTTTCATATCTGTGAATTAA
AGTCAAGTGCGTTGTCGGAGTAAATAGCCACGGGTAGCCTAACCGACTCTTCCTGGCTCCTA--AAAAAAATTATCAGGC
CATTCAAGCCTTTAAACATACAAAGCATAGGT-CCGCCTTCCTCCGGCCGA---------GGGCCGACTCCCAGAAGGCG
ACCCAGCCTCAAAAACCTCCTCCAAGAAAGATACAAGATAGCCGACTTCAGGAAGCCGGCCCCAAAAGGACCGACTCCCA
GAAGCCGACCACGAAGAAAGCCGGCTCCCAGAAGCCGGC----------------TAAGACTGCACCCACCAAGACTGTA
CCCACATAGCGGCGATAGGATGGGGTGTGGCCACAGTACAGCCCACTACCCCCGAATCCCGGAACAGGCATGGCCACAGG
GCGCCGTACGGGCCAGCCATCCCCCGTCCGGCGAGGCACTGTAGCCATGTTGGCCTCGATGTCACCCACGACAGGTGCCA
GTACGGCCCGTGGGCGGCGGGCCCCTTTGCTAGAGAGACATCTGAAGGCGGCCTGGCCTCCTCTAGTCGGCCAGGGATGT
GGCCGGCTCCCAATAGCCGGCTACCTCCCGCTCTCGAAACATGCGCCCCATTAAGAAGACAAGACGAGGTAAGGCTACAG
TGAAAGCTCGCAAGGCGGTGACACTGTAGCCACGCTTACCTCGACAAAGCCCTCGTCATCAGAGGCGAGGCGACAGTAAC
CAGCCGCCGATAAAGCCC-ACAAGCGGTGGGGCCGGCCTGCC---------------AGTCGGCGGGCCCCAATGACCGG
CGAAGAAGCCGGCGAGTATAGACACTGA
>chr2B_1
ATACATTCACGTCAGGTT---TCTCGTCCCTATATCTCAAAAACCCTATCTGATCTTGGGGGTGCTGCAGCAATGAGAAG
ACATACCCCAGCCGCCGCCGCC-TCCCAGGCCAGTGTCGGTGGCATCCTGAGGGGATCAAGACATCCAGGAGATCGACCA
CAACCTCTACATCATCCATCAATATCGCCTACAACGAGCAAGCGATCATGCCGACCTCCATGACACGTAAAGGATCCCTA
AACACATCTCTTTTCATGTTATTGTGAGAGATCTAGATGCAATTTTATCATGTTGTTTGCATCCTAGTGATGCATTAGAA
CCAACAATTATCAGTAATCATCATAACCCTTCATAAGCTTTTCCATAATTTGCCTCAAGAAGTTTCAGTCTACCATTTCA
TAAGGCAACTGATAGGCGTCGGCGCGCCGGCCCAAAGTTTCGGCCGGTCGTGCCCCAGCCGCCCGATTGGCCCACCACGA
GCTGTTGGATCCTCATCTATCTAGGTTGCTTTCTTCCTTCTCACCCATTCGCGTTCAGATCTGAAGAAATATCGCAGGAC
ATGGCAACCGTCCACCATCGCCGCGTTGCGCTGCCGCCCTCCCCCATTTGTCTTCGTCGACAGCCGCCGCCGTGCTCGCC
ACTAATGCTCGCCATGGACACTCGCAACAAGAAAAGTTGTCAAAAAACAGCTCTGTGTCGCCGCCCCTGTTGAATCATTT
GAAGACCTGGTTCCAGCAAATTGAAGCTATGGTTGTAGCAAAAGTCCCTGGTCCAGCAAAGAATTAAACTCCGGTGGAAG
CATTTTTGGATGTTGGTTCCAGCAAAACAAAATTGTGGCTGTAGCAAAAAAAATGCTGGTACAAAAAGAACGAATTCCCG
CAGAAGCATTTTTGGGTGCTCGTTCCAGCAAAACAAAAATGTGGTTGTAGCAAAAAATCACTAGTACAAAAAGAACGAAT
TCCGGTGGAAACATTTTTGGATGTTGGTGCCAGCAAATCGCCCCATCGGTTCCAGCAAACCTGGTCGTGGTTGCAACACT
GCCCCGTTGTGGTCACCTTGCAGCTCGCCGTGGTCACCAATTCTAGCAAAAACCGGGCGCGGTTGCAGCTCCTGCCTGAA
CGGTTGTAGCATCCCGTGTGCTCTGCCGTCGCGCCTGTCGGTCGAGGTAGTAACAACTCCGTTGCTGGTTGCAGCTCACC
CCGTAACGGTTGTAACATCCACACCAGCCGGTGGTAGCTCGTCAACTTGCGGTTTTAGCTCGGTCGTCCACCATCGCCGC
GTCGCGCAGCCGCCCTCCCCCGTTTGTTGACGTTGACAGCTCGCCGCTGATGCTCGCCATGGACACTCGCCGACCATCAC
CAACCTCGACGGCTGGTCTGTTGTAGCTCGCTGGCTGCAATCTCCACGATCGCCTGCTCGCCCCGACTCCCATAGCAGCA
GCTCTGTGCCCCTTCCTTCAGCCCGATGTGATTCACAGCTAGTGGAGAGGGGGATTTAGTTGCGTTGGAGATCAGCAGAG
GAGAGGGATTTTGCAAGGAAAGAAGCGGGTGTCCGTGCAGATGCGGATGGGGAATGAGTGCTGGAGCTCAGGGGTGAAGG
GATAAGGTAGGCATGGGAGTGGGGCGGTGCGTGGGGCCAGTGACGTGTGGAGAGGAGAAAAGGAAGAGGTGGCTACGCGA
GCGAGCGGCGCGGCCAGCCGAAGCTTCGGCCGGTCCGCCGATTTCAGACGTTTCCCCTTTCATAAGCTATTGATAAATCC
AGTTTATAAGCACACTAGCTCATTGAAGGGTCATTTCCATGATGAATACACTCAGAAGTAACTAGGCTGTTATCAAGAAT
TTCTTGACTGCAGTTAATTAACATCCAAAACACCATTCGTACACAAGATTTTAGAGACGGTAATGTTACCTGGCTGACGT
TTGCCGAGAGAGGAGTGGCAAGTGAATGTCATTCGATGGCAGTTTTAGTTGTGAAGAAAAATCAAACGGCAGCAGTTTAA
ACAAAAATGTCTTCTCTGAAGAAATTGTCATGTCGTTGTGAAGAAATTGCCACCCCTTCATAACTAAAATTGTCGCCTAA
AACGTTCGCGTGTGCCACCCTCCCTGGCGATCGTTCGCCAGTTATGAGCGTACCTTAAAAATCTGCCAGCTCACACGTGT
ACATAGCCTCTTGCCACACGTCGTACTATCCTTCCATGACTGAGTACAACCCTGCACGTATCCGCCGTATCCTCTTGCCA
CATGTTGTATTATTCCACGACTGAGTACAGACCGACGAACGGATGTGGAAGTCGCTTTGGAAGCTTATAAGGTATTGCCG
AAGGTACGTGTATTCTGGTGGCGGGTCATTCGTCATATTCTTTCAGATGAGTGCACGTTTCGGTATCGTCATATCAAACC
TATAAGCAGATGTAATGTCTGCCATGCAATGGATGAGGATCTCATGCAGGCCTTAGTGCATTGCTCTCATGCCAAACTTT
TCTGGGAGCAGGCTCATGGCCTCTTTGGCATTCGACGGCCGCGACTGAATCCGGATACTTGGTCTCGTGATATCATATGT
GATGATCAATTCATGGACATTGAAAGGGCCCAAATGATTTCTGTTATGTGGGCAATCTGGCACTCGAGGAATCGAGTGAC
TCATGATGATGACCAGCTTGATCCCTTCACTTCGGTGAGGCGGATTAGGGAGGACTTGGCACTGCTGGATATCCCGCACT
CTCATGATGTTCTGCTACCAGGTCATGGTTGGAGACCGCCGAAATCAGGGGTGGTCAAGATCAACACGGATGCAGCATTG
AGTATGGACTCCGACAAGGTGGGCATGGGCGGCATAGCACGTTCAAACACAACCTTGTTGGGAGCTTGGAGCAAACCTCA
TATTGGGGTCACGGATCCATTCATCGGTGAGACGCTCGCGCTCCGAGAAGGTGTTATCTTCGCAAATCTTCGGGGTTTCT
CACATGTGATCATGGAGACGGATTGCCTAGAGATTGTTAATCTCTGGAACACTCACCACACCAGCCTTTATGTGGTGGCA
CCTTTACTTGTAGAAATTGGAGAGCTAGCTGCTACTTTTTCTTCTTTTGTTATTCAACATGTAATGCGAGCGGCCAATGT
CCCGGCCCACCTTTGTGCAAAACATGCATGCACACTGGTGGTTACCGAGTGTTGGACGGACTCGAGACCATCTTTCCTGC
TCACCAGCCTGTTGGCTGATGATGCCAGGACCTTGTTCGTTGAATAAAAGCTCTCACGTTTGAACGCAAAAAAAGAGTAC
CACCCTGCATCTATCCTTTTTTTTGCGGGGAAATTCAGAGAGCTTTATTGAGTAAACGTATTCTTGGGACAATCAGCCAG
AAGGCTGGACACCAAGAAGCTAGGAGTCTCGTCAAGTCAACTATCGGTCACATTAAGTGTGCAGGCATGTTTGGCACACA
AGTGAGCCGGTAAATTGGCTGACCTGATTACATGTTGAATAACAAAAGAGGAAAATTGAGTACTAAGCTCTCCAATCTCT
AAAAGTAAAGGAGCCATAATTGAACGAGAATTGTGACGAGTGATAATGGAAGTCGATTGCTTGGAGTTGGTGACACTCTG
CACCCTGCACCTATCCGCCGTAGCCTCTTGCCACACGTTGTATTCTTCTACGACGAAGTACCACCCTCCATGTGTCCGCT
TCGGATAAGTGGCCCGAGTTCAATGCAAGCCCGTTCAACAGACCGGCTGTCTGG--TAACGATGAAAACGTGGAAGGGAT
ACAGCTCGGTCCCTCTCCCTCGTACTACCTGGATTGGAAGTTCGAAACTCGCTCGACAACATCTGCGCCATGGTGACCGA
ACAATCCCGATACGGCTACAGGAAGTTGATGGTAAGCTACGGCGGGAAGCTCCAGCGCTTCTCCGAAGGCGGCGGACCGC
AGTACATCGGCGGCGAGCACCAGGTCGTGAGGGTCAGCCAGTCCATCTCGCTGCAGGAGCTCCGCGACCGGCTGGCCACG
GCCGTGGGCTGTTTCAACATCGCTATCCAGTACGTCCGCCCCGGCGAGCCCCTGGACGCGCTCCACGATGTGGTGACCGC
CGGCGACGTCCGGGACCTGCTAGACTGGGTGCTATACCGGGACATCCATATCAAACTGCTCTGCGCAAACCCAGCGGACG
TCCCCCAAGTCCGGGTCTTCGTGGTCCGCGTGGATGGGCGGCCGCCGCTCCCCGAGGCGCTCTTCACTCCCGCTCCAAGC
ACGCCGGTCGCGGCGCCCACCGAGGCGCCGGTGTCTCTGTCCTCGCTCAAGCGGCGAAGTGCGTCGGCGCCTTCGCTGTC
CACAAAGTTGCCGGACGGCACGTCGCAGCCCCTCTCTCCGGCCCTCATCCATCGGAGCGTATCGGCGCCTTCGCTGTCAC
CGCCGTCGACCGGGGACGACACAACGTCTTCGACTACGACA---------------------------------------
-----------------------ACTGCCGGAAGCACCCGTGCGAACCAAGATGTCGCCCCCAACGCGGCAATGCAGAGG
AGTCTGGCGCGCCCGGCTCCGGTGTTCCTGGTGCCAGTAGCGCCGGTCATAGTGTACCAGCCGGTGATCCCAGTGTACCA
GGTGTTCGTCGTGCGTGATTGTGCTGTTCACCGCCTCAATCAGATCAGGTAAATTTCACCGACTAATCATCGCATAGAGA
GTGGTACAAACGTTATCGTCTTTTGATAAAAGAAAGTGTATTCTTATATGCAGGTGTCTACCAATTAGCTATGATATGAA
CAGTATTACTGAAGCCGCAGTACAAGGAGCCAACGAAGCTTTGGCGTGAAGAACGAAACTGCTCCGTGGACGACGAATGC
ATGCACGACAGCGGCACGATGGGCCATACAGCCGTTGATATGCGCTCGATGATATGCATGAACGACTTGATATGTGATGT
CGTGCATGAATCGTCCGCATGGCGTCGTGTGCATAGCAGCGCTGCGTGAAGAAACTCAATCACAAGTTTATTATTATTAG
TGTTTTGGATTTGGATGACGCAAGTGATAGCTTTTGAGTACTCCCTCTATAAAGGAATTATAAGAGCGTTTAGCTGACAA
TGACCATCCTATTTGGTCCATGTGTTTAAATTGTCCTCCTTTGGTCAATGTCAAAGTTTGATCTTTTACTTTTCCTTTGT
AAAAAGGTTTGATCTCTTTTTAGTAAACAATGTGATAAATTTGTTTATATGTATCTAACATGCAGAGGTCAGGGTAATAA
AACATTTCAATGTCTTAGAAATAAAAATAGTACAAGTACTCTCAAACTAAAATATACTA---------------------
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>chr2D_2574
GTCAAGCGCTGC--------------------------------------------------------------------
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------------TGTCGGAGTAAATAGCCACGGGTAGCCTAACCGACTCCTCCTGGCTCCTC--AAAAAAATTACCAGGC
CATTCAAGCCTTCAAGCATACAAAGCATAGGG-CCGCCTTCCTCCGGCCGA---------GGGCCGACTCCCAGAAGGCG
ACCCAGCCTCAAAGACCTCCTCCAAGAAAGATACAAGATAGCCGACTCCAGGAAGCTGGCCCCAAGAGGACCGACTCCCA
GAAGCCGGCCACGAAGAAAGCCGGCTCCCAGAAGCCGGC----------------CAAGACTACACCCACCAAGACTGTA
CCCACATAGTGGCGATAGGATGGGGTGTGGCCACAGTACAGCCCACTACCCCCGAATCCCGGAACAGGCATGGCCACAGG
GCGCCGTACGGGCCAGCCATCCCCCGTCCGGCGCGGCACTGTAGCCATGTTGGCCTCGGTGTCACCCACGAGAGGTGCCA
GTACGGCCCATGGGTGGCGGACCCCTTTGCCAGAGAGACATCTGAAGGCGGCCTGGCCTCCTCTAGTCGGCCAGGGATGT
GGCCGGCTCCCAATAGCCGGCTACCTCCCTCCCTCGAAACATGCGCCCCATTAAGGAGACAAGACGAGGTAAGGCTACAG
TGAAAGCTCGCAAGGCGGTGACACTGTAGCCACGCTTACCTCGGCAAAGCCCTCGTCATCAGAGGCGAGCCAACAGTAAC
CAGCCGCCGACAAAGCCC-CCAAGCGGTGGGGCCGGCCTGCC--------------------------------------
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>chr2D_2584
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-----------TTGTCGGAGTAAATAGCCACGGGTAGCCTAACCGACTCCCCCTGGCTCCTCAG-AAAAAATTACCAGGC
CATTCAAGCCTTCAAGCATACAAAGCATAGGG-CCGCCTTCCTCCGGCCGA---------GGGCCGACTCCCAAAAGGCG
ACCCAGCCTAAAAAACCTCCTCCAAGAAAGATACGAGATAGCCGACTCCAGGAAGCCGGCCCCAAGAGGACCGACTCCCA
GAAGCTGGCCATGAAGAAAGCCGGCTCCTAGAAGCCGGC----------------CAAGACTGCACCCACCAAGACTGTA
CCCACATAGCGGCGATAGGATGGGGTGTGGCCACAGTACAGCCCACTACCCCCGAATCCTGGAACAGGCATGGCCACAGG
GCGCCGTACGGGCCAGCCATCCCCCGTCCGGCGCGACACTGTAGCCATGTTGGCCTCGATGTCACCCACGACAGGTGCCA
GTACGGCCCGTGGGCGGCGGGCCCCTCTGCCAGAGAGACATCTGAAGGCGGCCTGGCCTCCTCTAGTCGGCCAGGGATGT
GGCCGGCTCCCAATAGCCGGCTACCTCCCTCCCTCGAAACATGCGCCCCATTAAGGAGACAAGACGAGGTGAGGCTACAG
TGAAAGCTCGCAAGGCGGTGACACTGTAGCCACGCTTACCTCGACAAAGCCCTCGTCATCAGAGGCGAGGCAACAGTAAC
CAGCCGCCGACAAAGCCC-CCAAGCGGTGGGGCCGGCCTGCC--------------------------------------
----------------------------
>chr2D_2584
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-----------TTGTCGGAGTAAATAGCCACGGGTAGCCTAACCAACTCCCCCTGGCTCTTC--AAAAAAATTACCAGGC
CATTCAAGCCTTCAAGCATACAAAGCATAGGGCC-GCCTTCCTCCGGCCGA---------GGGCCGACTCCCAGAAGGCG
ACCCAGCCTCAGAAACCTCCTCCAAGAAAGATACGAGATAGCCGACTCCAGGAAGCCGGCCCCAAGAGGACCGACCCCCA
GAAGCCGTCCACGAAGAAAGCCGGCTCCCAGAAGCCGGC----------------CAAGACTGCACCCACCAAGACTGTA
CCCACATAGCGGCGATAGGATGGGGTGTGGCCACAGTACAGCCCACTACCCCCGAATACCGGAATAGGCATGGCCACAGG
GCGCCGTACGGGCCAGCCATCCCCTGTCCGGCGCGGCAGTGTAGCCATGTTGGCCTCGATGTCACCCACGACAGGTGCCA
GTACGGCCCGTGGGCGACGGGCCCCTTTGCCAGAGAGACATCTGAAGGCGGCCTGGCCTCCTCTAGTCGGCCAGGGATGT
GGCCGGCTCCCAATAGCCGGCTACCTCCCTCCCTCGAAGCATGCGCCCCATTAAGGAGACAAGCCGAGGTAAGGCTACAG
TGAGAGCTTGCAAGGCGGTGACACTGTAGCCACGCTTACCTCGACAAAGCCCTCGTCATCAGAGGCGAGGCCACAGTAAC
CAGCCGCCGACAAAGCCC-CCAAGCGGTGGGGCCGGCCTGCC--------------------------------------
----------------------------
>chr6D_2584
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-----------TTGTCGGAGTAAATAGCCACGGGTAGCCTAACCGACTCCCCCTGGCTCCTCAAAAAAAA-TTACCAGGC
CATTCAAGCCTTCAAGCATACAAAGCATAGGG-C-GCCTTCCTCCGGCCGA---------GGGCCGACTCCCAAAAGGCG
ACCCAGCCTCAAAAACCTCCTCCAAGAAAGATACGAGATAGCCGACTCCAGGAAGCCGGCCCCAAGCGGACCGACTCCCA
GAAGCCGGCCACGAAGAAAGCCGGCTCCCAGAAGCCGGC----------------CAAGACTACACCCACCAAGGCTGTA
CCCACATAGCGGCGATAGGATGGGGTGTGGCCACAGTACAGCCCACTACCCCCGAATCCCAGAACAGGCATGGCCACAGG
GCGCCGTACGGGCCAACCATCCCCCGTCCGGCGCGGCACTGTAGCCATGTTGGCCTCGATGTCACCCACGACAGGTGCCA
GTACGGCCCGTGGGCGGCGGGCCCCTTTGCCAGAGAGACATCTGAAGGCGGCCTGGCCTCCTCTAGTCGGCCAGGGATGT
GGCCGGCTCCCAATAGCCGGCTACCTCCCTCCCTCGAAACATGCGCCCCATTAAGGAGACAAGACGAGGTAAGGCTACAG
TGAAAGCTCGCAAGGCGGTGACACTGTAGCCACGCTTACCTCGACAAAGCCCTCGTCATCAGAGGCGAGGCAACAGTAAC
CAGCCGCCGACAAAGCCC-CCAAGCGGTGGGGCCGGCCTGCC--------------------------------------
----------------------------
>chr1D_2584
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-----------TTGTCGGAGTAAATAGCCACGGGTAGCCTAACCGACTCCCCCTGGCTCTTC--AAAAAAATTACCAGGC
CATTCAAGCCTTCAAGCATACAAAGCATAGGG-CCGCCTTCCTCCGGCCGA---------GGGCCGACTCCCAGAAGGCG
ACCCAGCCTCAGAAACCTCCTCCAAGAAAGATACGAGATAGCCGACTCCAGGAAGCCGGCACCAAGAGGACCGACTCCCA
GAAGCCGGCCACGAAGAAATCCGGCTCCCAGAAGCCGGC----------------CAAGACTGCACCCACCAAGACTGTA
CCCACATAGCGGCAATAGGATGGGGTGTGGCCAGAGTACAGCCCACTACCCCCGAATCCCGGGACAGGCATGGCCACAGG
GCGCCGTACGGGCCAGCCATCCCCCGTCCGGCGCGGCACTGTAGCCATGTTGGCCTCGATGTCACCCACGACAGGTGCCA
GTACGGCCCGTGGGCGGCGGGCCCCTTTGCCAGAGAGACATCTGAAGGCGGCCTGGCCTCCTCTAGTCAGCCAGGGATGT
GGCCGGCTCCCAATAGCCGGCTACCTCCCTCCCTCGAAGCATGCGCCCCATTAAGGAGACAAGACGAGGTAAGGCTACAG
TGAGAGCTCGCAAGGCGGTGACACTGTAGCCACGCTTACCTCGACAAAGCCCTCGTCATCAGAGGCAAGGCAATAGTAAC
CAGCCGCCGACAAAGCCC-CCAAGCAGTGGGGCCGGCCAGCCGGCCAAGAGGCCGGCAGTCGGCGGGCCCCAATGACCGG
CGGAGAAGCCGGCGAGCATAGACACTGA
>chr4D_2584
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-----------TTGTCGAAGTAAATAGCCACGGGTAGCCTAACCGACTCCCCTTGGCTCTTCAAAAAAA--TGACCAGGC
AATTCAAGCCTTCAAGCATACAAAGCATAGGG-CCGCCTTCCTCCGCT-GA---------GGGCCGACTCCCAGAAGGCG
ACCCAGCCTCAAAAACCTCCTCCAAGAAAGATACGAGATAGCCGACTCCAGGAAGCCGGCCCCAAGAGGACCGACTCCCA
GAAGCCGGCCACGAAGAAAGCTGGCTCCCAGAAGCCGGC----------------CAAGACTGCAGCCACCAAGACTGTA
CCCACATAGCAGCGATAGGATGGGGTGTGGCCACAGTACAGCCCACTACCCCCGAATCTCGGAATAGGCATGGCCACAGG
GCGCCGTACGGGCCAGCCATCCCCCGTCCGGCGCGGCACTGTAGCCATGTTGGCCTCGATGTCACCCACGACAGGTGCCA
GTACGGCCCGTGGGCGGCGGGCCCCTTTGCCAGAGAGACATCTGAAGGCGGCCTGGCCTCCTCTAGTCGGCCTGGGATGT
GGCCGGCTCCCAATAGCCGGCTACCTCCCTCCCTCGAAACATGCGCCCCATTAAGGAGACAAGACGAGGTAAGGCTATAG
TGAAAGCTCGCAAGGCGGTGACACTGTAGCCACGCTTACCTCGACAAAGCCCTCGTCATCAGAGGCGAGGCAACAGTAAC
CAGCCGCCGACAAAGCCC-CCAAGCGGTGGGGCCGGCCTGC---------------------------------------
----------------------------
>chr1D_2585
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------TGTCGGAGTAAATAGCCACGAGTAGCCTAACCGACTCCCCCTGGCTCTTCAAAAAAAA-TTACCAGGC
CATTCAAGCCTTAAAGCATACAAAGCATAGGG-CCTCCTTCCTCCGGCCGA---------GGGCCGACTCCCAGAAGGCG
ACCCAGCCTCAGAAACCTCCTCCAAGAAAGATACGAGATAGCCGACTCCAGGAAGTCGGCCCCAAGAGGACCGACTCCCA
GAAGCCGGCCACGAAGAAAGCCGGCTCCCAGAAGCCGGC----------------CAAGACTGCACCCACCAAGACTGTA
CCCACATAGCGGCGATAGGATGGGGTGTGGCCACAGTACAGCCCACTACCCCCGAATCCCGGAACAGGCATGGCCACAGG
GCGCCGTACGGGCCAGCCATCCCCCGTCCGGCGCGGCACTGTAGCCATGTTCGCCTCGATGTCACCCACGACAGGTGCCA
GTACGGTCCGTGGGCGGCGGGCCCCTTTGCCAGAGAGACATCTGAAGGCGGCCTGGCCTCCTCTAGTCGGCCAGGGATGT
GGCCGGCTCCCAATAGCCGGCTACCTCCCTCCCTCGAAGCATGCGCCCCATTAACGAGACAAGACGAGGTAAGGCTACAG
TGAGAGCTCGCAAGGCGGTGACACTGTAGCCACGCTTACCTCGACAAAGCCCTCGTCATCAGAGGCGAGGCAACAGTAAC
CAGCCGCCGACAAAGCCCCCCAAGCAGTGGGGCCGGCCTGCC--------------------------------------
----------------------------
>chr4D_2585
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------TGTCGGAGTAAATAGCCATGGGTAGCCTAACCGACTCCCCCTGGCTCCTCAAAAAAAAATTACCAGGC
CATTCAAGCCTTCAAGCATACAAAGCATAGGG-CCGCCTTCCTCCGGCCGA---------GGGCCGGCTCCCAGAAGGCG
ACCCCGCCTCAAAAACCTCCTCCAAGAAAGATACGAGATAGCCGACTCCAGGAAGTCGGCCCCAAGAGGACCGACTTCCA
GAAGCCGGCCACGAAGAAAGCCGGCTCCCAGAAGCCGGC----------------CAAGACTGCACCCACCAAGGCTGTA
CCCACATAGCGGCGATAGGATGGGGTGTGGCCACATTACAGCCCACTACCCCCGAATCCCGGAAAAGGCATGGCCACAGG
GCGCCGTATGGGCCAGCCATCCCCCGTCCGGCGCGGCACTGTAGCCATGTTGGCCTCGATGTCACGCACGACAGGTGCCA
GTACGGCCCGTGGGCGGCGGGCCC-TTTGCCAGAGAGACATCTGAAGGCGGCCTGGCCTCCTCTAGTCGGCCAGGGATGT
GGCCGGCTCCCAATAGCCGGCTACCTCCCTCACTCGAAACATGCGCCCCATTAAGGAGACAAGACGAGGTAAGGCTACAG
TGAAAGCTCGCAAGGCGGTGACACTGTAGCCACGCTTACCTCGACAAAGCCCTCGTCATCAGAGGCGAGGCAACAGTAAC
CAGCCGCCGACAAAGCCC-CCAAGCGGCGGGGCCGGCCTGCC--------------------------------------
----------------------------
>chr4D_2585
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------TGTTGGAGTAAATAGCCACGGGTAGCCTAACCGACTCCCCCTGGCTCCTCAAAAAAA--TTACCAGGC
CATTCAAGCCTTCAAGCATACAAAGCATAGGG-CCGCCTTCCTCCGGCCGA---------GGGCCGACTCCCAGAAGGCG
ACCCAGCCTCAAAAACCTCCTCCAAGAAAGATACAAGATAGCCGACTCCAGGAAGCCGGCCCCAAGAGGACCGACTCCCA
GAAGCCAGCCACGAAGAAAGCCGGCTCCCAGAAGTCGGC----------------CAAGACTGCACCCACCAAGGCTGTA
CCCACATAGCGGCGATAGGATGGAGTGTGGCCACAGTACAGCCCACTAACCCCGAATCCCGAAACAGGCAGGGCCACAGG
GCGCCGTACGGGCCAGCCATCCCCCGTCCGGCACGGCACTGTAGCCATGTTGGCCTCGATGTCACCCACGACACGTGCCA
GTACGGCCTGTGGGTGGCGGGCCCCTTTACCATAGAGACATCTGAAGGCGGCTTGGCCTCCTCTAGTCGGCCAGGGATGT
GGCCGGCTCCCAATAGCCGGCTACCTCCCACCCTCGAAACATGCGCCCCATTAAGGAGACAAGACGAGGTAAGGCTACAG
TGAAAGCTCGCAAGGCGGTGACACTGTAGCCACGCTTACCTCGACAAAGCCCTCGTCATCAGAGGCGAGGCAACAGTAAC
CAGCCGCCGACAAAGCCC-CCAAGCGGTGGGGCCGGCCTGCC--------------------------------------
----------------------------
>chr7D_2585
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------TGTCGGAGTAAATGGCCACGGGTAGCCTAACCGACTCCCCCTGGCTCTTCG-AAAAA--TTATCAGGC
CGTTCAGGCCTTCAAGCATACAAAGCATAGGG-CCGCCTTCCCCCGGCCGACTATCCCCAGGGCCGATTCCCAGAAGGCG
ACCCAGCCTCAGAAACCTCCCCTAAGAAAGATACGAGATAGCCGACTCAAGGGAGCCGGCCCCAAGAGGACCGACTCCTA
GAAGCCGGCCATGAAGAAAGCCGACTCCCAGAAGCCGGCCATGAAGAAAGCCGGCCAAGACTGCACCTACTAAGACTGTA
CCCACGTAACGGCGATAGGATGGGGCGTGGCCGCAGTACAGCCCACTACCCCTGAATCCCGGAACAGGCATGGCCACAGG
GCGCCGTACGGGCCAGCCATCCCCCGTCCGGCGCGGCACTGTAGCCATGTTGGCCTCGATGTCACCCACGTCAGGTTCCA
GTACGGCCCGGGGGCGGCGGGCCCCTTTGCCAGAGAGACATCTGAAGATGGCCTGGCCTCCTCTAGTCGGCCAGGGATGT
GGCCGGCTCCCAATAGCCGGCTACCTCCCTCCCTCGAAGCATGCGCCCCATTAAGGAGACAAGACGAGGTAAGGCTACAG
TGAGAGCTCGCAAGGCGGTGACACTGTAGCCATGCTTACCTCGACAAAGCCCTCGTCGTCAGAGGCGAGGCAATAGTAAC
CAGCCGCCGACAAAGCCC-CCACGCAGTGGGGCCGGCCTGCCGGCCAAGAGGCCGCCAGTCGGCGGGCCCCAATGACCGG
CGAAGAAGCCGGCGAGCATAGACACTGA
>SNPs
------------------SSS----S------------------------S----------------------S-S--S-
--S---S---------------S-------------S-------S--------------S---S----------------
-------------S---------S------S-------------------S-------SS--------------------
---S----S--S----------SS--S-S---------------------------------------------------
------------------------SS--------------------------------------S---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------S----------S-----------
--------------S-------S----S--------------------------S-----------S-S-----------
-S---------------------------------S--------------------------------------------
---------S------------S----------S------------------------------------S---------
---------------------------S-------S--------------------S---S-------------S-----
---------------------S----S-----------------S------S-S---------S-------------S--
------------S--------S----------------S--------S---------------------S----------
--S--------S--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------SS---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------S------------
------------------------------------------------------SS------------------------
----------------------S--------------------------------S-----------------S------
----------------S---------------------------------------------------------------
-------------------------------S-----------------------------------------S------
-----------S---------------------------------S----------------------------------
S--------------------------------------------S---------------S------------------
--------------------------------------------------------------------------------
----S---------------------------------------------S-----------------------------
-S-----------------------S---S---------------------------------S--------S-----S-
----------S---S-------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS---------------S------S----------------------------------
--------------S--------------------------S--------------------------------------
------------------------------------------------------S-------S---------S-------
------------------------------------------------------------------------------S-
----------S-----------------------S---------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------S------------------
-----------------S------------SS----SSS--------------------------S----------S---
--------------------------------S-----------S---------------------S-----S-------
-----S----------------S--------------------------------------------------S------
----------------S------------------------------------------SSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS--------------------------------------S-----------S------------------
------------S--S---------------S------------------------------------------------
-----------------------------------------------S-----------------S--------------
-------S-----------------------------------------------S------------------------
--------------------------------------------------------------------------------
---------------------------------S----------------------------------------------
------------------------------S-------------------------------------------------
-----------------------------S-S-----------------------S------------------------
-----------------------------------------------------------------------S--------
----------S--------S------------------------------------------------------------
----------------S-----------
>forward_3290
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------GACTGAGTAC
CACCCTGCAC----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------------------------
>reverse_5106
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------ACGTTTAGCTGGCAT
GACCA---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
>forward_4452
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------ACTACGACGACAACTGCCAG----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
>reverse_5440
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------------A
AGTCAAGTGCGTTGTCGGA-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
