>input_sequence_53680
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------------------------------------------------------------------------------AT
GGGGTCGTTCAAGGGGCACCTTCTGCCGGGAACGCTGTTCCTGGCCGTGGGCGCCTGGAACGTGTGGGCGGCCGTGGCGC
GCTTCGCTTTCGACCCGGCCGGGTTCCGCCTCCTCGTCTGGAACCCCGTGGGCGGCGGCGGCGGCGGGGCGCTGCGGCAC
CTCGAGCTCTACGTGATCGCCGGAGGCGCCTTCCTGGATATGTGCGTGGAGGTGCTCTACTCTACTCATCTCCACATATT
TGCACCCGGCGGCGGAGTCAACCCGACACACCTCAACGACCTCGAGCATGGCGGCATGCTGCTCATGTTCTTCCTCTTCG
GTGCCCTCGCTCTCCTCTCTGAAAAGACGAGGTCAGTATCCA--------TCATCTCTTTGCACTATACCGCCATAGATG
ACATGATCCAAGATTCATCCATTTTTCCTCAGAATTTTATTCATTTCATTCTCTTTTCACTCGATCATCTGTAGCAAGAG
GTAGTATTCTTTTTTCTTTTAGAATACGCATAGACATGCATATCATATTTTATTTTCATAAAAGG-AGGGTGATTGGGTG
AATATACCCGTCCACCAAAGCAAGATGTATTT------------------------------ATCACGCGGAAGTTTCGT
TTCTAAGTATACTTCTAATTTCTTCGGAGTGGGAGATGGGGGCCAGGGGCCATCTCTGCCGT------------------
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--------------------TCATTTCACCATTTTGTTTTTCTCGTAAACCATTTTGGTATCTTGACTCCAATGGACAGT
GTGCCCATGAATGGTTTGTGTTCAAATGCGAATGAAATTGCAGTAATTCCAATCTGTAAGCACCCCGGTGAGCTAACTTG
GGCTTTCACCGGTGATCACCGCACGCAGGTACCTGCCCCTAACGGAGGGCGCGTTGTGTCTGGTGCTGGCAACGGCCTTC
ACTGCAGAGCTGCTGCTCTTCTACTTCCACTCAACCACCCACCAGGGGCTGGAGGGATATTACCACTACCTCCTGGTTCT
GCTGATTGGACTCTGCGTCGCCTCCACCGTCCTCGGTGCGCTCCTCCCGGCGAGCTTCCCTGCTGACCTTGCTAGTGGCG
TGCTGATGACCCTGCAGGGCATGTGGTTCTACCAGATGGCGTTCACGCTCTATGGGCCGATGCGCCCC------------
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-----------------------------------------------------GCGGGGTGCCACCACGATGCTGGCAGG
AACATCGAGTGCCATGGGCAAGCGGCCGGGGAGCGCGCGGAGCAGCTCGCCAACTTCCAGCTCTTCGCGTGCGTCTTCCT
TGTGTTCGCCTACACCCTAGGCTGCTACGCCGTCGCCGCGGCCAAGTACGGCCACCCAGACCTCAGGACGAAGCACTCCG
TCGAGATGGAGCACCGAGAAAATAGCGCCGATAGGGGTGGATTGGTTGGCATATGA------------------------
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---------------------------------------------------
>chr2D_1_TraesCS2D01G194300
GCCGGTGGTGGACTGATGCTGCGAGCCGGGGGCGCGCCCAGCA-CCCGCAGCACCCGCACCGGCCTTTGCTGCGGTCAGT
GTTCCCCGAGCGTCGTCGACCGCCGATGTGGCTGGTGTTGCCGAGCATGTCGGATGCAGCGCCGCCGGTGCTGTTGATGA
GGAGTGCTGCAATTGGTGGATCTCGTCGGCGGCGGGGATGCTTCCAGGCAGCACGAGTGGTGTTGCGTCCTCCCAGATCT
CGATGGACGGCGGAGCTGCAGTACAGCACGCCGGTGGGCAGCGGAGCTGCTGTTGCGACGGGGCATCTCTCCTCAACTCC
GGCTGCAATGAAGCTTCACCACGTCGCCGGTGCTGCCACGCCAAGCTTCACCGGAGCCGCCGGTGCTTCATTGGAGCTCT
GCCGGAGTTGCATTGGAGCTTCACCGGAGCCCCCGGTGCTGCATCGGAGCTCTGCCGGAGTTGCATTGGAGCTTCACCGG
AGCCGCCGGTGCTGCGTTGGAGCTCTGCCGGAGTTGCATTGGAGCTTCGCCGGACACCGTCAGTGCTGCG----------
----------------------CTGGAGCTTCGCCGGACGCCGGTGGTGCGCCATGACGAGCTGCAGTGCAGCTTTTGCC
-GGGGTGCAGCGGTGCTGTGTCGAAGCAGTAGCGTGCTTTACTGCTCCCGTGACTGCTCCCGTGACTTTGTTATCATCGA
ACGGTTACCACGGTGTTGATCGGACGGCTGATTTGTAGCAGTCGCCAAGATTGGATTTGAATCACTGTTTATGTGTATGT
AACGAAGCAAAGTCAGCGGACTGTAGCTCTTTTTGCCAGAGGATTTGGTTCCGTCGCCAGCGGACGACGCTAATGGATGG
TCGCTGATCCGTTCTTTCAGGAAGCGTGCTAGGACCACGAGCGACT---TGAGCTAAAGGGCGCCGGG-ATAGAAGTCAA
CGCCGGCGGCGAGCCGCGCGCAGATCCGAAGGCAGGGCAGGGGCCACGCGCGTTGCGCGCAGGCGAACAGCGGCGCTGAT
GGGGTCGTTCAAGGGGCACCTTCTGCCGGGAACGCTGTTCCTGGCCGTGGGCGCCTGGAACGTGTGGGCGGCCGTGGCGC
GCTTCGCTTTCGACCCGGCCGGGTTCCGCCTCCTCGTCTGGAACCCCGTGGGCGGCGGCGGCGGCGGGGCGCTGCGGCAC
CTCGAGCTCTACGTGATCGCCGGAGGCGCCTTCCTGGATATGTGCGTGGAGGTGCTCTACTCTACTCATCTCCACATATT
TGCACCCGGCGGCGGAGTCAACCCGACACACCTCAACGACCTCGAGCATGGCGGCATGCTGCTCATGTTCTTCCTCTTCG
GTGCCCTCGCTCTCCTCTCTGAAAAGACGAGGTCAGTATCCA--------TCATCTCTTTGCACTATACCGCCATAGATG
ACATGATCCAAGATTCATCCATTTTTCCTCAGAATTTTATTCATTTCATTCTCTTTTCACTCGATCATCTGTAGCAAGAG
GTAGTATTCTTTTTTCTTTTAGAATACGCATAGACATGCATATCATATTTTATTTTCATAAAAGG-AGGGTGATTGGGTG
AATATACCCGTCCACCAAAGCAAGATGTATTT------------------------------ATCACGCGGAAGTTTCGT
TTCTAAGTATACTTCTAATTTCTTCGGAGTGGGAGATGGGGGCCAGGGGCCATCTCTGCCGT------------------
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--------------------TCATTTCACCATTTTGTTTTTCTCGTAAACCATTTTGGTATCTTGACTCCAATGGACAGT
GTGCCCATGAATGGTTTGTGTTCAAATGCGAATGAAATTGCAGTAATTCCAATCTGTAAGCACCCCGGTGAGCTAACTTG
GGCTTTCACCGGTGATCACCGCACGCAGGTACCTGCCCCTAACGGAGGGCGCGTTGTGTCTGGTGCTGGCAACGGCCTTC
ACTGCAGAGCTGCTGCTCTTCTACTTCCACTCAACCACCCACCAGGGGCTGGAGGGATATTACCACTACCTCCTGGTTCT
GCTGATTGGACTCTGCGTCGCCTCCACCGTCCTCGGTGCGCTCCTCCCGGCGAGCTTCCCTGCTGACCTTGCTAGTGGCG
TGCTGATGACCCTGCAGGGCATGTGGTTCTACCAGATGGCGTTCACGCTCTATGGGCCGATGCGCCCC------------
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-----------------------------------------------------GCGGGGTGCCACCACGATGCTGGCAGG
AACATCGAGTGCCATGGGCAAGCGGCCGGGGAGCGCGCGGAGCAGCTCGCCAACTTCCAGCTCTTCGCGTGCGTCTTCCT
TGTGTTCGCCTACACCCTAGGCTGCTACGCCGTCGCCGCGGCCAAGTACGGCCACCCAGACCTCAGGACGAAGCACTCCG
TCGAGATGGAGCACCGAGAAAATAGCGCCGATAGGGGTGGATTGGTTGGCATATGACACCTTTTTATCAAGATTTGGTTC
CAACCAACGTGTGCCACGTGGTTTTATTTTTGTTGACAAAAAGGTAGGGTGCTCCTGCGATTTTATAAAGAAGAATGGAG
TTGATCCGATTTATATGGAAAACGAGGCTAACAGCATCTATAACCGGATTTGGCAAATTCGACCTCTCAACGTCTCATAT
TTCC-TTCTCCACATACAACTCTCTCATATTCATCTCCTAAATCCATACAAAAGCATGCTGAATATATAGCTACGTACTA
CTTTCTATACTACTCAAATTTCGTCGTTGTCGGAGATGGCCTGAGCCGCCAGTGC------------TGGAGGAC-----
----------GGGCT------------GCCTGCGCTGCCTGCATCTGTTGCCGACGGCGACGCGTGGCCTCCACAGCCGA
CTCCGAGCGGATGGAGTTCAGGATGGCGTGCT--GCTCAGACCACACGCCCACGTCGTCC-CCATCGCCGGCGCCTCCTC
CTCCCCCACATCCAGCGGCGGCGCCTCCTTCATCGGCTCCTGCTC---CTTCTCCTCCTCCTCTTCCTCCTCCGC---CG
GCTCCTGCTCCTCCTCCTCTTC----CTCCTCCGCCCA------------C---------------------ACCTCATC
GAAAGTCTCCTCTGG-TTCCAGAGGTAGCCCCGCTTCCCTACAGATCCGGACCTACTCAAGGAGGAAGAGACGGTGCTGG
ATCGTGTAGTAGCGGCGGCGTGGGGGCATGGCTAACGGGCTCGAGTGGCGGCGGAGGGAGGGAAGAGGCTGATCTGCTA-
GGCTGGGGGCGCCGACCGGATTAAATAGCCGGCTACGGCCTCAGGCAGTGAGCCGGAGCGGC-GCCACGCGGCGTTCACG
CCGCGGCGACGGTCGAGGCGCCCGTCGAACCG--TCGGGTTCCCCGGCGAGTCCGTGTGGGGCCACGACATCAGGCCGAC
ATGGCGGGTG----TGTCCGGA---------CGC---------CCCCATATCCGCCCCATATTTGGGCTAGATATGGGGG
-TGCCGGACAGTCCGGACGTT-TGAGGGCCGTTTGAGAGGCATGTCTGGGT
>chr7A_1
GCCGGTGGTGGACTGATGCTGCGAGGCGGCGACGCGCCCAGCACCCCGCAGCACCCGCACCGGCCTTTGCTGCGGTCAGT
GTTCCCCGAGCGTCATTGACCGTCGATGTGGCTGGCGTTGCCGAGCATGTCGGATGCAACGCCGCCGGTGCTATTGATGA
GGAGTGCTGCAATTGGTGGATCTCGTTGGCGGCGGGGATGCTTCCAGGCAGCACGAGTGGTGTTGCGTCCTCCCAGATCT
CGACGGACGGCGGAGCTGTAGTACAGCACGCCGGTGGGCAGCGGAGCTGCTGTTGCGACGAGGCATCTCTCCTCAACTCC
GG-TGCAATGAAGCTTCACCACGTCGCCGGTGCTGCCACGCCAAGCTTCACCGGAGCCGCCGGTGCTTCACTGGAGCTCT
GCCGGAGTTGCATTGGAGCTTCACCGGAGCCCCTGGTGCTGCATCGGAGCTCTGCCGGAGTTGCATTGGAGCTTCGCCGG
AGCCGTCGGTGCTGCGTTGGAGCTCTGCCAGAGTTGCATTGGAGCTTCGTCGGACGCCGTCGGTGCTGCA----------
----------------------CTGGAGCTTCACCGGACGCCGGTGGTGCGCCATGACGAGCTGCAGTGCAGCTTTTGCC
-GGGGTGCAGCGGTGCTGTGTCGAAGCAGTAGCGTGCTTTACTGCTCCCGTGACT------------TTGTTATCATCGA
ACGGTTACCAGGGTGCTGATCGGACGGCTG--------------------------------------------------
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---------------------------------------------------
>chr5D_1
GCCGGTGGTGGACTGATGCTGCGAGGCGGGGGCACGCCCAACACCCCGCAGCACCCGTACCGGCCTTTGCTGCGGTCAGT
GTTCCCCGAGCGTCGTGGACCGCCGATGTGGCTGGTGTTGCCGAGCATGTCGGATGCAACGCCGCCGGTGCTATTGATGA
GGAGTGCTGCAATTGGTGGATCTCGTCGGCGGCGGGGATGCTTCCAGACAGCACGAGTGGTGTTGCGTCCTCCCAGATCT
CGACGGACGGCGGAGCTGCAGTACAACACGCCGGTGGGCAGCGGAGCTGCTGTTGCGGCGGGGCATCTCTCCTCAACTCC
AGCTGCAATGAAGCTTCACCACGTCGCCGGTGCTGCCACGCCAAGCTTCACCGGAGCCGCCGGTGCTTCATTGGAGCTCT
GCCGGAGTTGCATTGGAGCTTCACCGGAGCCCCCGGTGCTGCATCGGAGCTCTGCCGGAGTTGCATTGGAGCTTCACCGG
AGCCGCCGGTGCTGCGTTGGAGCTCTACCGGAGTTGCATTGGAGCTTCGTCGGACACCGTCGGTGCTGCGTTGGAGCTTC
GCCGGACGCCGTCGGTGCTGCGTTGGAGCTTCACCGGACGCCGGTGGTGCGCCATGACGAGCTGCAGTGCAGCTTTTGCC
-GGGGTGCAGCGGTGCTGTGTTGAAGCAGTAGCGTGCTTTACTGCTCCCGTCACT-------------------------
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---------------------------------------------------
>chr6A_2
-CCGGTGGTGGACTGATGCTGCGAGGCGGGGGCGCGCCCAGCACCCCGCAGCACCCGCACCGGCCTTTGCTGCGGTCAGT
GTTCCCCGAGCGTCATCGACCGCCGATGTGGCTGGTGTTGTCGAGCATGTCGGATGCAACACCGCCGGTGCTATTGATGA
GGAGTGCCGCAATTAGTGGATCTCGTTGGCGGCGGGGATGCTTCCAGGCAGCACGAGTGGTGTTGCGTCCTTCCAGATCT
CGACGGACGGCGGAGCTGCAGTACAGCACGCCGGTGGGCAGCGGAGCTGCTGTTGCGACGGGGCATCTCTCCTCAACTCC
GGCTGCAATGAAGCTTCACCACGTCGCCGGTGCTGCCACGCCAAGCTTCACCGGAGCCGTTGGTGCTTCATTGGAGCTCT
GCCGGAGTTGCATTGGAGCTTCACCGGAGCCCCCGGTGCTGCATCGGAGCTCTGCCGGAGTTGCATTGGAGCTTCCGCGG
AGCCGCTAGTGCTGCCTTGGAGCTCTGCCAGAGTTGCATTGGAGCTTCGTCGGACGCCGTCGGTGCTATGTTGGAGCTTC
GTCGGACGCCGTTGGTGCTGCGCTGGAGCTTCACCGGACGCCGGTGGTGCGCCATGACGAGCTGCAGTGCAGCTTTTGCC
AGGGGTGCAGCGGTGCTGTGTCGAAGCAGTAGCGTGCTTTACTGCTCTCGTGACT------------TTGTTATCATCGA
ACGGTTACCAGGGTGCTGATCGGACGGCTG--------------------------------------------------
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---------------------------------------------------
>chr2A_822
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-------------------------------------------------------GCCAGCGGACGACGCTAACCGATGG
TCGCTGATCCGTTCTTTCAGGAAGCGTGCTAGTACCACGAGCGAGGACGTGGGCTAAAGGGCGCCGGGGATAGAAGTCAA
CGCCGGAGGCGAGCCGCGCGCAGATCCGAAGCAGG-----------------------GCAGGCGAACAGCGGCGCTGAT
GGGGTCGTTCAAGGGGCACCTTCTGCCGGGAACGCTGTTCCTGGCCGTGGGCGCCTGGAACGTGTGGGCGGCCGTGGCGC
GCTTCGCCTTCGACCCGGCCGGGTTCCGCCTCCTCGTCTGGAACCTCGTGGGCGGCGGCAGCAGCGGGGCGCTGCGGCAC
CTCGAGCTCTACGTGATCGCCGGAGGCGCCTTCCTGGATATGTGCGTGGAGGTGCTTTACTCTACTCATCTCCACATATT
TGCACCCGGCGGCGGAGTCAACCCGGCACACCTCAACGACCTCGAGCATGGCGGCATGCTGCTCATGTTCTTCCTCTTCG
GTGCCCTCGCTCTCCTCTCTGAAAAGACGAGGTCAGCATCCATCCATCTATCATCTCTTTGCACTATACCGCCATAGATG
ACATGATCCAGGATTCATCCA-TTTTCCTCAGAATTGTATTCATTTCATTCTCTTTTCACTCAATCGTTTGTAGCAAGAG
GTATTTTTCTCTCTC--TTTAAAATACGCATAAGCATGCATATCATATTTT-----CATAAAAGGAAGGGTGATTGGGTG
AATATACCCGTCCACCAAAGCAAGAGGTATTCAGATGAACTTATAGCTTACAGAAAGAAGAAATAACGCGGAAGTTTCGT
TTC----TATACTTCTAATTTCTTAGGAGTGGGAGATGGGGGCCAGAGGCCATCTCTGCCATTTTGTGAGCAGATATGCA
ACGTCACTTGGTTTCACATTCCATGATACTTGAGGGTTCTACCTTGGTCCCAGTGGAGTTTCTGTGTAACCTATTTGCCC
TGCAATCCTATTGCCGTTGTTTTTGATCTTGTCCATTCAGCCATTGTTATCACAAAATATGTATATCTCATTGTAAAAGT
ACACATAGTCATCACCGAAATCATGTCACCATTTTGTTTTTCTCGCAAACCATTTTGGAATATTGACTGCAAGGAACTTA
ACTGAACATTGTTTCTGTC---CAAATGCGAATGAAATTGCAGTAATTCCAATCTGTAAGCACCCCGGTGAGCTAACTTG
GGCTTTCACTGGCGATCACCGCACGCAGGTACCTGCCCCTAACGGAGGGCGCGTTGTGTGTG------------------
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>chr2A_1866
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------------------------------------------------------------TGGTGCTGGCAACGGCCTTC
ACTGCAGAGCTGCTGCTCTTCTACTTCCACTCAACCACCCACCAGGGGCTGGAGGGATACTACCACTACCTCCTAGTTCT
GCTGATTGGGCTCTGCGTCGCCTCCACCGTCCTCGGTGCGCTCCTCCCGGTGAGCTTCCCTGTCGACCTTGCTAGTGGCG
TGCTGATGACCCTGCAGGGCATGTGGTTCTACCAGATGGCGTTCACGCTCTATGGGCCGATGCGCCCCGCGGCAGCGGCA
GTGGCGGAGACAAGGGGGGGCTATTGGCTCAAGTCTCCTTCTAAACGTTGTGTTCTCCTGTGATTAGTACGCAGAAAATT
ATCCGCAGCCGTTCCGTGCCCTAAGCCGCCCGGCCGCCTCTGCTCTCCCAGCCTGCTGCTGCTCTCAATCCTATTCTTAT
AGCATGGCGCGACGCAACCTTCTTCAGTTGCCAAATCTTCCGGATCCAACCAACGGGAACTAGCCAAGGACACATGGTTT
AACACATCACTACATCACACCATCTAGTAATCTCAATTTCCGTCTTGTATCGTTGTTCAAATTATACATCAGCTTTTTGT
TGTTTACTTGTTTCGGTTGTGTGATTTGTGATGGTACGATCCTATCTTGTATTATCCTTGAAATAATGGTGATCATGATG
CGAATTATCTTATATGAGTTTCTATTTGTGATGCAAATTTTTCCTATGTCGAACAGCTAATTGTGAGACTGCAATTCGAC
AGATACGAAGATAAAAGCGCCACGAAATGCCTCTATGATTAATTCTTTTTAAGCCGGATTCTTCAAGTTCTCAACCTACT
AAATTGTTAATGATGCTGATGCGCAAGTTACAAATCCCAGTCAAATTGACACTCATAATAAGAATATGCCGGACATGGTA
AAAGTTGTAGAATAAGAAAACAACATAAGCCCAAGTTATCTGCAAGACCTGATAAACATTGTCAAATTGGAGCTACCACC
GGACAAGCAAGATGAAGCTCCAATTTCTATATACACCTGAGGGACCATATCAGCGACAAAGTGCCCCTAAACACTCTAAC
TATTTATTTATCAGTTAAGCGCCGCCATATGGGAGACGAATTACTTCGATATTGAATGATCTTACATGTTGAAAAAGAGT
TAGCAGGTAATTTCTCTTGCAGTGAAATTATTAAACTTTTTCATCTTATTTGGCAATTGTAGAGGCGAATTTAAACTCAT
ACAATCGTATGCATGTTTTTTACTGTGCAACACATCAATATATAGTATGATTATAGTTATTTACTTTTGCTTCAGAAAAA
AATGAACTTGACTTGGCCCCTCTATACTAAAATCCTGGCTCCACCCCTGCCCTGCGGGGTGCCACCACGATGCTGGCAGG
AACATAGAGTGCCATGGGCAAGCGGCCGGGGAGCGCGCGGAGCAGCTCGCCAACTTCCAGCTCTTCGCGTGCGTCTTCCT
TGTGTTCGCCTACA-CCTAGGCTGCTACGCCGTCGCCGCGGCCAAGTACGGCCACCCAGACCTCAGGACGAAGCACTCCG
TCGAGATGGAGCACCGAGAAAATAGCGCCGATAGGGGTGGATTGGTTGGCATATGACACCTTTTTATCAAGATTTGGTTC
CAACCAACGTGTGCCATGTGGTTTTATTTTTGTTGACAGAAAGGTAGGGTGCTCCTGCGACTTTATAAAGAAGAATGGAT
TTTATCCAGTTTATATGGAAAACGAGGCTAAGAGTATCTATAATCGGATTTGGCAAATCCGACCTCTC-ACGTCTCATAT
TTCC-TTCTCCACATACAACTCTTTCATATTCATCCCCTAAATCCATACAAGAACATGCCGAATATATAGCTACGTACTA
CATTCTATACTACTCAAATTTCGTCGTTGTCGGAGATGGCCTGAGCCGCCAGCGC------------CGGAGCCA-----
----------GGGCT------------GCCTGCGCCGCCTCCATCTGTTACCGACGGCGACGCCTGGCCTCCGCAGCCGA
CTCCGAGCGGATGGAGTTCAGGATGGCGTGCT--GCTCCGACCACACGCCCATGTCGTCCTCCATCGCCGGTGCCTCCTT
CTCCCCCACATCCAGCGGCGGCGCCTCCTCCGCCGGCTCCTACTC---CTCCTTCTCTTCCTCATCCGCCGGCTC---CT
GCTCCTTCTCCTCCTTCTCTTC----CTTCTCCGCCGGCTCCTGCTCCTCCTTCCCTTCCTGCTCCGTCGAGACCTCCTC
GAAATCCTCCTCTAG-TTCCAGAGGTAGCCCCGCTTCCCTACAGATCCGGACCTGCTCAAGGAGGAAGAGACGGTGCTGG
ATCGTGTAGTAGCGGCGGCGTGGGGGCATGGATAACGGGCTCGAGTGGCGGTGAAGGGAGGGAAGAGGCGGATATGCTAG
GGCTGGGGGCGCCGACCGGATTAAATAGCCAGCTACGGCCTCGGGCGGTGAGCCGGAGCGGC-GCCACGCGGCGTTCACA
CCGCGGCGACGGTCTAGGTACCCGTCGGACCG--TTGGGTTTCCCAACGAGTCCGTGTGGGGCCACGCCGTCAGGCCGAC
ATGGCGGGCG----TGCCCGGG---------CGC---------CCCCATATCTGCCCCATATTTGGGCTAGATATGGGGG
GTGCCGGACAACCCGGGCGTT-TGAGGGCCGTTTGAGAGGCCCGTCTGGGT
>chr2D_2530
ACA-----------------------------------------------------------------------------
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------------------------------------------------------------------------TCTCATAT
TTCC-TTCTCCACATACAACTTTCTCATATTCATCCTGTAAATCCATACAAAATCATGCAGAATATATAGCTACGTACTA
CGTTCTATACTACTCAAATTTCATCGTTGTCGAAGATGGCCTGAGTTGCCTGCTC------------CAGAGCCT-----
----------GGGCCGCCTGCGCCGGAGCCTGCGACGCCTCCATCTACTGCTGACGATGACGCCTGGCCTCCGCAGCCGA
CTCCGAGTGGATGGAGTTTAGGATGGCATGCT--GCTCCGGCCACACATTCACGTCCACCTCCACCGCCGGCGCCTCCTC
CTCCTCCACATCTAGCGTCGGCACCTCCTCCGCCGGCTCCTGCTC---CTCCTCCTCTTCCTT------GTCCACCTGCT
CCTCCTCCTCCTCCTCCTCTTC----CTCCTCCGGTGGCACCTT------------------------------CTCCTC
GAAATCCTCCTCTGG-TTCCAGAGGTAGCCCCGCTTCCCTACAGATCCGGACCTGCTCAAGGAGGAACAGATGACGCTGG
ATTGTGTAGTAGCGGCGGCGTGGGGGCATGGCTGATGGGCTCGAGTAGCGGTGGAGGGAGGGAAGAGGCGGATGTGCTAG
GGCTGGG-GCGCCGGCCGGCTTAAATAGCCGGCTACGCCCTCGGGCGGGGAGTCAGAGCGGCGGCCACGCGGCGTTCACA
ATGCGTCGACCGTCGAGGCACCCGTCGGACCG--TCGGGTTTCCTGGCGAGTCCATGTGGGGCCAAGCCGTCAGGCCGAC
GTGCCGGGCG----CGCCTGGG---------CTC---------CCCCATATCCGCCTCATATTTGGGTTGGATATGGGGG
GTGCCAGTCAGCCCATGCGTT-TAAGGCCGGTTTGAGAGGC----------
>chr4D_2530
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---------------------------------------------------------------------ACGCCTCATAT
TTCC-TTCTCCACATACAACTCTCTCATATTTATCCCCTAAATCCATATAAAAGCATGCATAATATATAGCTACGTACTA
TGTTCTATACTACTCAAATTTCGTCGTTGTCGATGATGGCCGGAGCCGCCAGCGC------------CGGAGCCT-----
----------GGGCC------------GCCTGCGCCGCCTCCATCTGTTGCCGACGGCGACACCTGGCCTCCGCAGCCGA
CTCTGAGCGGATGGAGTTCAGGATGGTGTGTT--GCTCCGGCCACATGCCCACGTCCTTCTCCATCGTCGGCGCCTCCTC
CTCCCCCACATCCAGCGGCGGCGCCTCCTGCTCCTCCTCCGCTGG------------CTCCTACTCCTCCTCCGC---TG
GCTCCTGCTCCTCCTCCTC-------------CCCCGACACCTCCTCCTCA---------------------ACCTCCCC
GAAATCCTCCTCCGG-TTCCAGAGGTAGCCTCGCTTCCCTACGGATCCGGACCTGCTCAAGGAGGAAGAGACGGGGCTGG
ATCGTGTAGTAGCGGCGGCGTGGGGTCATGGCTAACGGGCTCGAGTGGCGGCGGAGGGAGTGAAGAGGCGGATGTACTAG
GGCTGGGGGCGACGGCCGGCTTAAATAGCCGGCAACGGCCTCGGGCGGCGAGCCGGAGCAGC-GCCACGCGACGGTCACA
CCACGGCGACGGTCGAGGCGCCCGCCGGACCG--TCGGGTTTCCCGACGAGTCCGTGTGGGGCCACGCCGTCAAGCCATC
GTGGCGGGCGGGCGCGCCCGGG---------TGC---------CCCCCTATCCGCCCCATATTTGGGCTGGATATGGGGG
GTGCCAGTCAGCCCG------------------------------------
>chr3B_2530
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---------------------------------------------------------------------ACGTCTCATAT
TTCC-TTCTCCACATACAACTCTCTCATATTCATCCTCTAAATTCATACAAAAGCATGCGAAATATATAGCTCCGTACTA
TGTTATATACTACTCAAATTTTGTCGTTGTCGGAGATGGCCTGAGTCGCCTACGC------------CGAA---------
GT------CGGAGCCGCCTGCGCCGGAGCTTGCGCCGCCTCCATCTGTTGCCGACGTCGACGCTTGGCCTCGGCAGCCGA
CTCTGCGTGGATGGAGTCCAGGATGGCGTGCT--GCTCCGGCCACACGCCCACGTCCTCCTCCATCGCCGACGCCTCCTC
CTCCCCCACATCCAGCGGCGGCGCCTCCTCTGTCGG-TCCTGCTC---CTCCTCCTCTTCCTC------CTTCGT---CG
A------CTCCTCATCTTC-------CTCCTTCGTCGACTCCTCCTCCACC---------------------ACCTTCGT
GAAATCCTCCTCCGG-TTCCAGAGGTAGCCCCACTTCCCTACGGATCTGGACCTGCTCAAGGAGGAAGAGACGGTGCTGG
ATCGTCTTGTAGCGGCGGCGTGGGGGCATGGCTAACGGGCTCGAGTGGCGGCGGAGGGAGGGAAGATGCGAATGTGCTAG
GGCTGGGGCCGCCGGCCGGCTTAAATAGTCGGCTACAGCTTCGGGCGGGGAATCGGAGCGGC-GCCACGCGGCATTCACA
CCGCAGCGACGGTCGAGGCGCCCGTCGGATTG--TCGGGTTTCCCGGTGAGTCCGTGTGGGGCCACGCCGTCAGGCCGAG
ATGGCGGGTG----TGCCTGGG---------CTC---------CCCCATATTCACCTCATCTTTGGGCTGGATATGGGGG
GTGCCGGTCAACCCGGACATTTTGAGGGCCATTTGAGGGGC----------
>chr3B_2530
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---------------------------------------------------------------------ACGCCTTATAT
TTTC-TTCTTCACATACAACTCTCTCATATTCATCTCTTAAATTCATATAAAAGCATGCAGAATATATAGCTACGTACTA
CGTTTT-TACTACTCAAATTTCGTCGTTGTCGGCCATAGCTGGAGCTGCCAGCGC------------CGGAGTCG-----
----------GAGCCGCCAACTCCAGAGCCTGGGCCGCCTTCATCTGTTGCCGACGGCGATGCCTGGCCTCCACAGCCGA
CTCCGAGCGGATGGAGTTCAAGATGGCGTGCT--GCTCCTGCCACACGCCCACGTCCTCCTCCATCATCGGCGCCTCCTC
CTCCCCCACATGTAGCGGCGCTGCCTCGTCCTCTTCCTCCGCCGG------------CTCTTGCTCCTCCTCCGT---CG
GCTCCTGCTCCTCCTCTTC-------CTCCTTCCCCGACACCTCCTCCTCA---------------------ACCTCCTC
GAAATCCTGCTCCGG-TTCCAGAGGTAGCCTCGCTTCCCTACGGATCCGGACCTGCTCAAGGAGGAAGAGACAATGCTGG
ATCGTGTAGTA-CGGCGGCATGGGGGCATGGCTAACGGGCTCGGGTGGCGGTGGAGGGAGGGAAGAGGCGGATGTGCTAG
GGCTGGGGGCGCCGGCTGGCTTAAATAGCCGGCTATGGCCTCGGGCGGCGAGCTGGAGCGGC-TCCATGTGGCGGTCACA
CCACGGCGACAATCGCAGCGCAACTCGGGCCGTC---GGTTTCCCGACGAGTCCGTGTAGGGCCATGCCGTCAGGCCGAT
GTGGCGGGTG----TGCCTGGG---------CGC---------CCCCATATCTGCCCCATATTTGGGCTGGATATGGGGG
GTGCCGGCCAGCCCGGGCATT-TGAGGG-----------------------
>chr3B_2535
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--------------------------------------------------------------------------TCATAT
TTTC-TTCTTCACATACAACTTTCTCGTATTCATTTCTTAAATTCATACAAAAGCATGTAGAATATATAGCTACATACTA
CATTCTATACTATTCAAATTTCATCGTTGTCGGAGATGACCTAAGTCGCCAGCGC------------CGAA---------
GCTGGAGCCGGAGCC------------GCCTACGCCGCCTCCATCTGTTGCCGACGGCGACGCCTGGCCTCCGCAGCCGA
CTCCGCGCGGATGGAGTTCGGGATGGCGTGCT--GCTCCGGCCACACGCCCACGTCCTCCTCCAGCGCCTCCTCATCCTC
CTCCCCCACATCCAGCGACGGCGCCTCCTCCGCTGGCTCCTGCTCTTGCTCCTCCTCTTCCTC------CTCAGC---CT
CCTCCTCCTCCTCCTCCTCTTC----CTTCTCCGCCGGCTCCTCCTCCTCC---------------------ACCTCCTC
AAAATCCTTCTCCGGTTTCCAGAGGTAGCCCCGCTTCCCTATGGATCTGGACCTGCTCAAGGAGGAAGAGATGGTGCTAG
ATCATGTAGTAGCAGCGGCGTGGGGGCATGGCTAACAGGCTCGAGTGGCGGCGGAGGGAGGGAAGAGGCGGATGTGGTAG
GGCCGGGAGCATCGATCGGCTTAAATAGCCGGCTACAGCCTCAGATGGGGAGCCGGAGCGGC-GTCACGTGGCGTTCACA
CCACGGCGACGGTCGAGGGGCCCGTCGGACTG--TCGGGTTTCTCGGCGAGTCAGTGTGGGGCCACATCGTCAGC-CGAC
GTGGCAAGCG----CGT-----------------GCCCGGGCGCCCCATATCCGCCCTATATTTGGGCTGGATATGGGGG
GTGCCGGTCAGGCCGGGCGTT-TGAGGACCGTTTGAGGGGCCGCCTGGGT-
>chr3A_2535
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--------------------------------------------------------------------------TCATAT
TTCC-TTCTTTACATACAACTCTCTTATATTCATCCTCTAAATCCATATCAAAGCATGCAT-ATATATAGCTACGTACTA
TATTCTATACTACTCAAATTTCGTCGTTCTCGTAGATGGTCTGAGTCGCCTGAGCCAGAGCCGAGGCCGGAGCCGCCAGC
GCCGAAGCCTGGGCC------------GCCTTCGCCGCCTCCATCTGTTGCCGACGGCGACGCCTGGCCTCCGCAGCCGA
CTCCGCGCGGATGGAGTTCAGGATGGCGTGCT--GCTCCGTCCACACGCCCATGTCCTCCTCCATCGCCAGCGCCTCCTC
CACCCCCACATCCAACGGCGGCGCCTCCTCCGGCGGCTCCTGCTC---CTCCTCCTATTCCTC------GTCCGC---CG
GCTCCTGCTCCTCCTCTTCTTC----CTCCTCCGCCGGCTCCTCTTCTTCC---------------------ACCTCCTC
GAAATCATCCTTCAG-TTCCAGAGGTAGCCCCGCTTCCCTACAGATCCGGACCTGGTCAAGGAGGAAGAGACGGTGTTGG
ATCGTGTAGTAGCAGCGGCGTGGGGGCATGGCTAATGGGCTCGAGTGGTGGCGAAGGGAGGGAAGAGGCGGATGTGCTAG
GGCTGGGGGCGCCGACCGACTTAAATAGCCGGCTACAGCCTCGGGCGGCGAGCCGGAGCGGC-GCCACGTGACGTTCGCA
CCGCG-CGATGGAAGCGACGTCCGTCGGACCG--CCGGGTTTCCGGATGTTTCCGTGTGGGACCATGTCGTCAGACCGAC
GTGACGGGCG----TGCCCGGGGCGTCCGGACGC---------CCCCGTATTCACCTCATATTTGGGCTGGATATCGGGG
GCGCCGGTCAGCCGGACG---------------------------------
>chr3B_2536
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---------------------------------------------------------------------------CATAT
TTTTTTTTTCCACATACAACTCTCTCATATTCATCCCCTAAATTCATACAAAAACATGCTGAATATATAGCTACGTACTA
TGTTCTATACTACTCAAATTTCGTCGTTGTCGGAGATGGCCTGAGTCGCCTGCGC------------CGGAGCCGCCAGC
GCTGGAGCCAGGGCC------------GCCTGCGCCGCCTCCACCTATTGCCAACGGCGACGCTTGGCCTCCGCAGCCGT
CTCCGCGCGGATATAGTTCAGGATGGCATGCT--GCTCCAGCCATACGCCCACGTCCTCCTCCATCGCCGGCGCCTCCTC
CACCCCCACATCCAGTGGCGGCGTCTCCTC------------------------------------------CGC---CG
GCTACTGCTCCTCCTCCTCTTC----CTCGTCTGCCGGCTCCTCCTCCACC---------------------ACCTCCTC
GAAATCCTCCTCCGG-TTCCAGAGGTAGCCCCGCTTCCCTACGGATCCGAACCTGCTCAAGAAGGAAGAGACGGTGTTGG
ATCGTGTAGTAGCGGCGGCGTGGGGGCATGGCTAATGGGCTCGAGTGGCGGCGGTGGGAGGGAAGAGGCGAAGGTGCTAG
GGTTGGGGGCGCCGGCCGGCTTAAATAGCCGGCTACAGCCTTGAGTGGGGAGCCGGAACGGC-GCCACGCGACATTCACA
CCATGGTGACGGTCGAGGTGCCCGTCGGACTG--TCGGATTTCCCGACGAGTCCGTGTGGGGCCACGCCGTCAGTGCGAC
GTGGCGGGCG----T-----GG---------CGC---------CCCCATATCAGCCTCATATTTAGGCTGGAAATGGAGT
GTGCCGGTCAGCTCGTTCTTT-TGAGGGCCGTTTGAGGGGCCTTTCTGGGT
>chr5B_2627
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-------TACTACTCAAATTTCGTCGTTGTCGAAGATGGCTGGAGTCGCCCGCGC------------CGGAG--------
----------------------------CCTGGGCCGCCTACATCTGTTGCCGACGGCGATGCCTGGCCTCCGCAGCCGA
CTCCGAGCGGATGGAGTTCAGGATGGCGTGCTCTGTTCCGGCCACATGCCCACGTCATCCTTCATCACAGGCGCCTCCTC
CTCCCCCACATCCAGCGGCGGCGCCTCCTCTGCCAGCTCCTGCTA---CTCCTCATCTTCCTC------GTTCGT---CG
GCTCCTGCTCCTCCTCCTCTTC----CTCCTCCGCCGGCACCTCCTCCTTC---------------------ACCTCCTC
GAAATCCTCCTCCGG-TTCCACAGGTAGCCCCGCTTGCCTACGGATTCGGACATGTTCAAGGAGGAAGAGACGGTGCTGG
ATCATGTAGTAGCGGCGGCGTGGGGGCATGGCTAACGGGCTCGAGTGGTGGCGGAGGGAGGGAAGAGGCGGATGTGCTAT
GGCTGT-GGCGCCGGCCGGCTTAAATAGCCGGTTACGGCCTCGGGCGGGGAGCCGGAGCGGC-GCCACGCGGTGTTCACA
CCGCGGCGACTGTTGAGGCGCCCGTCGGACCG--TCGGGTTTCCCTGCGAGTCCGTGTGGGGCCACGTTGTCAAGCCGAC
GTGGCGGGCG----TG----------------------------CCCATATCCGCCCTATATTTGGGCTGGATATGGGGC
GAGCCGGTCAGCCTGGGCGTT-TGAGGG-----------------------
>chr2D_2684
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-----------GGCT------------GCCTGCGCCGCTTCCATCTGTTGCCGACAACGACGTCTGGCCTCCGTAGCCGA
CTCCAAGCGGATGGAGTTTAGGATGGCGTGCT--GCTCCGGCTACACGCCCACGTCCTCCTCCATCATCGGCGCCGCCTC
CTCCCCCACATCCAGCAGCGGCGCCTCCTCCTCTTCCTCCGCCGG------------CTCCTGCTCCTCCTCCAC---CG
GCTCCTGCTGCTCCTCCTCTTCGCCCCCTCCCCCCCGGCACCTCCTCCTCA---------------------ACCTCCTC
GTAATCCTCCTCCGG-TTCCAGAGGTAGCGTCGCTTCCCTACAGATCCGGACCTGCTCAAGGAGGAAGAGACGGTGCTGG
ATCGTGTAGTAGCTGCGGCGTGGGGGCATGGCTAACGGGCTCGAGTGGCGGCGGAGGGAGGGAAGAGGCGGATGTGCTAG
GGCTGGGGGCGCCGGCCGGTTTAAATGGCCCGCTACGGCCTGGGGCGGCGAGCCGGAGCGGC-GCCACGCGACGGTCACA
CCGCAGCGACGGTCGAGGCGCCCGTCGGACCGTCTCGGGTTTCCCGGCGAGTCTGTGCGGGGCCACGCCGTCAGGTCGAC
GTGACGGGCG----TGCCCGGG---------CACGCCCGGGCGCCCCATATCCGTCCCATATTTGGGCTGGATATTGGGG
GTGCCGGTCAGCCCGGGCGTT-TGAGGG-----------------------
>SNPs
-------------------------S------------------------------------------------------
----------------------------------------------------------S-------------S-------
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---S----------------------------------------------------------------------------
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-------------------------------------------------S-----------S------------------
--------------------------------S-----------------------------------------------
-------------------------------------------------------SSSSSSSSSSSS-------------
----------S----S--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------SS-----
--------------------------------S-----------SS-----S----------------------------
------S------------------------SSS-SSSSSSSSSSSSSSSSSSSSSSS----------------------
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-------S-------------------------------------S-------------S--S-----------------
--------------------------------------------------------S-----------------------
-------------------------S------------------------------------------------------
------------------------------------S-------------------------------------------
----------S----------S--------------S-------------------------S---S-S-----------
---S-S----S-S-SSS----S----------SS-----------------SSSSS------------------------
-------------------------S-----S--------------------------------S---------------
---SSSS-----------------S---------------------S-------------S-------------------
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------------------------S--------------------S------------S--S------S---S-S--SSS
SSSSSSSSSSS-SSS-SSSSSS----------------------------------------------------------
---------S--S----------------------------------------------S--------------------
-----------------------------------------------------------S--------------S-----
---------S----------------------------------------S-----------SS----------------
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-----S--------------------------------------------------------------------------
--------------S-----------------------------------------------------------------
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----------------S---------------------S---------------------S------------------S
--S----SS----------------------S--S--------S--------------S---------S-----------
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-S--------------------------------------------------S--------------S----SSS-----
-----------------------------------S----S----------------------S----------------
--------------------------------------S-----------------------------------------
-----------------------------S-S------------------S------------S----------------
------------------------------------S----------------------------------------S--
----SS------------------------------------------------S-------------------------
---------------------------------------------------------------------S---S------
----------------------------------------------S--------------------------------S
---------------------------S-------------S-------------------------S-S----------
---------------------S----------------------------------------------------------
-----------S-----------------------------S---------
>forward_530
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------------------------------GAGTTGCATTGGAGCTTCGC------------------------------
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>reverse_3799
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--------------------------------------AAAAGGTAGGGTGCTCCTGC----------------------
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---------------------------------------------------
