>input_sequence_53522
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----------------------------------------ATGGCCCTTTTTTCCAC------GTCTAGATGTTCTTGGT
TAGGGCTCTGTGTGCTCCTTGTCATGAGCTGCCTGATGCTAGCCGGCTGCTCTTCGGAGTCGTTGCT---GACAAGCGAT
GATGAGCACTTGGGCA---------------------ACCATCATGATCTGATGATGGACCGTTTCCACTTGTGGATGAC
GGTGCAGAACAGATCCTACTCCACCGCCGATGTGAAGGCTCGCCGGTATGAGGTATACCGGAGCAACATGAGGTTTATAG
AGGCCGTGAATGCCCAGGCGGCCACCTCTGGGCTCACGTACGAGCTTGGGGAGGGTCCCTTCACCGACCTTTCAAGTGAA
GAATTCATGGCGCTTTATACCGGCCAGATTCCAGAGGGTGACCATGGGCAAGATGGTGAGGAAGACCAGCAGATTATCAC
CACCCATGCTGGGCCTATGGGTCCTGCGGGCACATATTCT--------GTGTACGCCAACTTCTCGGCCGGCGCGCCGAG
GAGCATCGACTGGAGGAACAGAGGTGCCGTCACCCCCGTAAAAAACCAAGGGCAATGTGGTACAGACAACATCTCTTGTT
AATCTTTTTCTGCACTAGCTATATACTCCCTCCGTCCTAAAATAAGTGTCTCAACTTTGTACTAGCTCTAGTACAAATTT
GTACTAAGCTCAAGACACTTATTTTGGGACAGAGGGAGTACACGATGTCAATTGACGGCCACAACTTACTATA-------
-------------------------------------TAGCTTAATGATTACACTAACCATTGATACAAAACTGCAGGAT
CTTGCTGGGCATTCTCCACGGTGGCTACAATTGAAGGACTGCACAAGATCAAGAGAGGGACTATTGTCTCCCTGTCGGAG
CAACAGCTGGTAGACTGCGACTCCCTTGATGGCGGTTGCAATGGTGGCCAGACCAGCAGAGCTTTCCTGTGGATCAAAAG
GAATGGAGGGATCACCACCACAGCTTCCTACAGATACAAGGCATCCAGAGGTCAGTGCATGAGGAACCGTAAGCCGGCGG
CAACAATTATTGGCTCGAGGGCAGTCAAGAGCAACAGCGAGGTGTCACTGATGAACGCCGTGGCAAACCGTCCTGTAGCC
GTTGCCATCTCGGTAGATGGCAAGCACTTCCACCACTTCAAGCTGGGCATCTACAATGGGCCATGTGGTGATGGTAAGCT
CAACCATGCTGTCACCGTAGTAGGTTATGGGCAACAGAAACAAAACGGGGCCAAGTACTGGATCGTGAAGAATTCATGGG
GGGGCACATGGGGTGACAAAGGCTTCATGCAAATGAAGAGGGGAACAAAGAATCCATCAGGGCAGTGTGGCATTGCGATG
CAGCCAGTTTTTCCCCTTATGAAAGGTGGAAGAACGACTGATTAA-----------------------------------
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>chr7B_1_TraesCS7B01G494100
CCAACTTCTCAACTTGAGTTAGTGTAAAGACACGCTGCATAGCGTGTCGGTTCATATTCTAACCTCCGATCCGAGGAATC
CGCTGACCTCCGTATGTATATGGACAACTTGTCTCACATGTCAGGATAATAAAAAATGTTAGTTATACCATACCTGGATT
ATATTCCTTCAACTACTAAGTACATCAAGTGGGTCCATGCAGTTAGTATGCGAGAGATCTATATCACCTAGGATTCCAGA
CATTATTAATGAGATTCCTAGAACCTCCATCCAAGTCATCTCGCGTGTCAGGCCAGCCTAGCCTTGTGTCAACCTTTGTT
GTTCCTTAAGCTCATGTCGCTTTGATTATCGCATATTTCAACATTTTCTATGCAACTACATGACTGAATGGGTATAATGT
AAGATTTTAAGATGTATAAAATTAATTCAGATATTTTTTTCATTTCCGGTTGATTAGGTTAGTATATTTCAATAGGGTTG
ATTAGCCATTAGTATGTCGAATTCATTCCCTTTTGTTGGCTGGGTGTTCTTCTCCATTTTGGTGAGTGCGTTCAGTGTAC
GCTGGAAATTCCTAAACTTACAGAGGAAAGGCTAAAGTATCGCGTAATATTGATTTTCACCATGGGCCATAGGTATAGCA
TTACTTTTGCACGGTGGCATGCTTTCATGGTTGTATCATTGATCGTTAGGAGCCTCTTTAATTTAAAGCCAGACGTAACA
TTGTTTTACGTGAGCTGTCATGACGTACAAGCGTCTTACGTAAGCAATGTGACGTGCATATATCGAATCCGTAGATAGGC
TTAACTGCACATATGACTTTGTTATGGCGAGCCCGTGCCTATCATGCATGTTACTTCTTGTTTTCCTTTTTTGGAGGGGG
CCGGTCATGCTACTTGTTGCATATAGCTCTGCTCTGGGCTATAAAAGCAACGCAACCAAGATGAGCATGAGAAGCATCCA
ATCAGCAACAACAAGGCATTAGCATTACCATCAAAATCAAATGGCCCTTTTTTCCAC------GTCTAGATGTTCTTGGT
TAGGGCTCTGTGTGCTCCTTGTCATGAGCTGCCTGATGCTAGCCGGCTGCTCTTCGGAGTCGTTGCT---GACAAGCGAT
GATGAGCACTTGGGCA---------------------ACCATCATGATCTGATGATGGACCGTTTCCACTTGTGGATGAC
GGTGCAGAACAGATCCTACTCCACCGCCGATGTGAAGGCTCGCCGGTATGAGGTATACCGGAGCAACATGAGGTTTATAG
AGGCCGTGAATGCCCAGGCGGCCACCTCTGGGCTCACGTACGAGCTTGGGGAGGGTCCCTTCACCGACCTTTCAAGTGAA
GAATTCATGGCGCTTTATACCGGCCAGATTCCAGAGGGTGACCATGGGCAAGATGGTGAGGAAGACCAGCAGATTATCAC
CACCCATGCTGGGCCTATGGGTCCTGCGGGCACATATTCT--------GTGTACGCCAACTTCTCGGCCGGCGCGCCGAG
GAGCATCGACTGGAGGAACAGAGGTGCCGTCACCCCCGTAAAAAACCAAGGGCAATGTGGTACAGACAACATCTCTTGTT
AATCTTTTTCTGCACTAGCTATATACTCCCTCCGTCCTAAAATAAGTGTCTCAACTTTGTACTAGCTCTAGTACAAATTT
GTACTAAGCTCAAGACACTTATTTTGGGACAGAGGGAGTACACGATGTCAATTGACGGCCACAACTTACTATA-------
-------------------------------------TAGCTTAATGATTACACTAACCATTGATACAAAACTGCAGGAT
CTTGCTGGGCATTCTCCACGGTGGCTACAATTGAAGGACTGCACAAGATCAAGAGAGGGACTATTGTCTCCCTGTCGGAG
CAACAGCTGGTAGACTGCGACTCCCTTGATGGCGGTTGCAATGGTGGCCAGACCAGCAGAGCTTTCCTGTGGATCAAAAG
GAATGGAGGGATCACCACCACAGCTTCCTACAGATACAAGGCATCCAGAGGTCAGTGCATGAGGAACCGTAAGCCGGCGG
CAACAATTATTGGCTCGAGGGCAGTCAAGAGCAACAGCGAGGTGTCACTGATGAACGCCGTGGCAAACCGTCCTGTAGCC
GTTGCCATCTCGGTAGATGGCAAGCACTTCCACCACTTCAAGCTGGGCATCTACAATGGGCCATGTGGTGATGGTAAGCT
CAACCATGCTGTCACCGTAGTAGGTTATGGGCAACAGAAACAAAACGGGGCCAAGTACTGGATCGTGAAGAATTCATGGG
GGGGCACATGGGGTGACAAAGGCTTCATGCAAATGAAGAGGGGAACAAAGAATCCATCAGGGCAGTGTGGCATTGCGATG
CAGCCAGTTTTTCCCCTTATGAAAGGTGGAAGAACGACTGATTAAGCCGTGCTTGCTTTATATCCAGATCCATCCATTTC
AATTTATCAAACTTCGTAATACAGGCCTGCAGGTGCACAGTGCCTACGTAGGTTGCATGTGCTACTTTTGGTCTAGGTGT
GTACTCCGTTTTGAAAATAAGGATCTGTATGTACTAAATTTTAAATTTCTGTAATTTGGTTTAATGGCAAGTTGTTAACT
TATTTTTAACGCCATCATGTGCAACAAGTTGTGTCATTTGTTTAGTTCATCTACCTACTCGCATCGCCTGATATAAAATG
GAATATATCTACTATATACCGAAAGCACAATATATATGGAAGAAAAAATAAAAATATGCTAGAAAATCCCACAATGATGA
GAAACATCCGGCCATCAGTTTAAGTAACAACAAAACAATAACCATTTGGTTTTGATTATATATACTTTGCATCTTCTATC
TATTATATATAAAAAGTGCATGACGGGTTAATCATAAAAGTGATAAATAAGCTAGAAATTACCACAATAATTAAAAATAT
TTGGTTGTTGATTTGGTGGATCCATAACTTAAAAGGCGTAATTAATGGATTAGATCTAAGGGCACTCCATCTAAAAAAAG
ACTTCAGCTATCCTTAGCATGTACGTCCCAAAAAGAAAAAAAACTTCAACTATCCTTAGCTTATACGTATGTTCCATCTC
AAAAAGAAAAGAAACATCTGATCGTTGATTTGGTGGACCCGTAACTTAAAAGACATAAATAATGGATTAGATTTAAGGGA
GCTTTATCTCAAAAAACAAAAAAAAACTGCAGTTATCCTTAGTATGTACGTATGTTGCATCTTTTTTTTTTGCATGGTAA
CACGTGTCATATTATATCATAAGGATCATATTACAAGCCCTGTACAAACAGACCTTGCAAAACTGAAAAGATAGCAAATC
GCTAGCCTTTGCACAAAGTAACAACATCCAAGAAGTAAAATTACAATCAAGACCAAAGAAACGTCTGAACTTGACAACAA
CGTCC
>chr3B_917
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------------------------------------GGCTATAAAAGCAACACAACCTAGCTGAGCATGAGA-GCATCCA
ATCACCACCAACA---CATTAGCATTACCATCAAATGACTGGTCACACAATCATGCTCTCCATGTCTAGGTGTTCTTCAT
TAGCGCTATGTGTGCTCCTTGCCACCAGCTGCCTGATGCTAGCCGGTTGCTCCTCCGAGTCGTTGCCAACGACAAGCGAT
GATCTTCACCGTGAGCGCTCCGGCATCAGCACCGACGACCACCATGATCTGATGATGGGCCGTTTCCACGTGTGGATGAC
GGTGCAGAACAGATCCTACTCCACCTCCGACGAGAAGGCTCGTCGGTTTGAGGTATACAAGAGCAACATGAGGTACATAC
AGGCTGTAAATGCTGACGCGACTACCTCTGGGCTCACGTACGAGCTTGGGGAGGGTCCCTTCACAGACCTTACAGATGAA
GAGTTCATGGCGCTTTATACCGGGCAGATTCCG------------------------GAGGATGACGAGCAGATTATCAC
CACCCGTGTTGGCCCTGTCAATGGCGCGGGCACATATGAGGGTGTCAT-----CGCCAACTTCTCGGCCAGGGCACCGAG
TAGCGTGGACTGGAGGAAGAGAGGCGCCGTCACCCCGGTTAAAGACCAAGGGGAATGTGGTACGTGCAACATCTCTTGTT
CC---TTTTCTCTACTAGCTATATA-------------------------------------------------------
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>chr3A_1128
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-------------------------------------ACCACCATGGTCTGATGATGGGCCGTTTCCATGTGTGGATGAC
GGCGCAAAACAGATCCTACTCCACCTCCGATGAGAAGGCTCGCCGGTTTGAGGTATACAAGAGCAACATGAGGTACATAG
AGGCTGTGAATGCCGAGGCCACCACCTCTGGGCTCACGTACGAGCTTGGGGAGGGTCCCTTCACTGACCTTACAGATGAA
GAGTTCATGGCGCTTTATACCAGGCAGATTCTG------------------------GAAGATGACGAGCAGATTATCAC
CACCCATGTTGGCCCTGTCAATGGCGCGGGCACATATGAGGGTGTCGCGTGTATGCCAACTTCTCAGCCAGGGCGCCGAG
TAGCGTGGACTGGAGGAAGAGAGGCACCATCACCCCGGTTAACGACCAAGGGAAATGCGGTACGTGCAACATCTGTTGTT
T---TTTTTCTCTACTAGCTATATATAATT--------------------------------------------------
--------------------------------------------ATGACAATTGAGAACGACAACTTGCCAACAAAGTAA
CAACAACGGCTACAAAATACATTTTTACATACGCAGCTAGCTCAATGATTAAGTTAAGCATTGCTATGCAACTGCAGGAT
CTTGCTGGGCATTCGCCGCCGTGGGTGCAATCGAAGGACTACACAAGTTCAGGAGAGGGACCCTGGTGTCTCTGTCGGAG
CAACAGCTAGTAGACTGCGACTCCTTCGACGGCGGTTGCAATGGCGGCCGGGCTAGCAGAGCTTTCTAGTGGATCCAACA
GAATGGAGGGATCACCACCACATCCTCCTACGGATACAAGGCAGCCACTGGTCGGTGCAGAACGAACCGTAAGCCGGCCG
CAAAGATCACTGGCTCCAGGAGAGTCGAGGGCAACAACGAGGTGTCGCTGAGGAACGCCGTGGCTAACCGACCTATAGCC
GTTTTGATCGCGTCAAGTGGCAGCCACTTCCACCACTACAAGGGAGGCATCTTCAACGGGCCATGTAGCACCACGAAGCT
GACCCATGCCGTCACCGTAGTAGGCTACGGGCGACAGGCACAAGATGGTGCCAAGTATTGGATCGTGAAGAACTCGTGGG
GGGCCACATGGGGTGACAAAGGTTACATGCTAATGAAGATGGGCACAAAGAATCCATCAGGGCAGTGTGGCATTGCGACA
CGCCCAGTCTTTCCCCTTATGAAAGTAAAAGAATCGACTGATTAA-----------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------S-----S--S-----------S-------
----S--S-----SSS-------------------SSSSSSSSSS-SSSS-SSSSSS------------S-------SS-
---S---S-------------S--SS--------------------S-----S--S----------S-------------
---SSS---SSS-SSS-------------------------S----------------S----------S----------
-------------------------S------S--------------S----------SS--------------SS----
----S---------S-----S-------------------------------------------S------S--SS----
--S--------------------S--------SSSSSSSSSSSSSSSSSSSSSSSSS-----S---S-------------
--------S---S---S-SSS-SSS------------SSS-----------------------------S-S--------
S---S-S-----------S-----S-----------S--S---S--------S----------SSS--------------
SSSS-------SS------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S-------SSS-S-------S-S-SS-------
------------------------------------------S--------SSS---S-----S--SSS-----------
--------------S--S-S----S-S----S--------S------S---S---------SS-S--S--S---------
--------S---------------S-S--S--------------S----S-S-S------------SS-------S--SS
----------------------S-S------S-----------S---SS----S-----SS-S---------------S-
---SS--S-S------S---SS----S--S------S---------S----S------------S-----S---S-----
---SSS---S--SS-SS-----SS-------------S----SSS-------S---S---------S-SSSSSSS-----
S-S------S--------------S--S----S----SS----S-S--S--------S--------------S--S----
---S------------------S-S-----S--------S---S----------------------------------SS
-SS-----S----------------SSSS-SS-S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS
>forward_525
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-------------------------TTCCCTTTTGTTGGCTGGGT-----------------------------------
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>reverse_1974
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-----------------------------------------------------CAGCAGAGCTTTCCTGTGGA-------
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>forward_1402
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----------------------GCCAGATTCCAGAGGGTGAC--------------------------------------
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>reverse_2691
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--------------------------------------------------CTACCTACTCGCATCGCCTG----------
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