>input_sequence_53512
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------------------------------------------ATGCAGGAAGCTCCCCTCACTCCGGCCCACCCCGT---
---------------------------------------------------CGCCTTCGGGTTCTGGCCCAGACCGGTGT
GCTTCCCCACCGCCGACGGGCTCTTCTTCTACGGCGGCTGCACCCCCTTCGTCCCGTGCGCCAGCCCGTCGCCGATCGGC
ACCTCCTTCGTCCCGTGCGCCAGCCCGTCGCCGCTCGGCACCCCCTTCGTCCCGTGCTCCAGCCCGTCGCCGCTCGGCAG
CCCCTTCACGCCGAGCCCCAGGCTTCCGCCGCGCGCCGCCCCCTTCACCCAGAACCCCAGGCCGTCGCCGCGCGCCACCC
CGTTCACCCCGTTCACCCCG------------------------------------------------------------
---------------------------------------TTCACCCCGAGCCCCAGC-----------------------
----------------ACCTCGTCGCGCGGCACCCCCTTCACCCCGAGCCCCAGGGCGCACCCGTGCGGCACCCCCTGGT
CCTCCTCC---------TCCTCCGGCTCCCGCGTGGACGATGCGGCGGCCACGGAGCACCGCCTGCATCTGGCCCGCCTC
GCGCTCCAGTGCCAGGACGCCACCAACCGCTACGAGCTCTGCCTCAGCCACCTCGCCGACGCCGCGCGCGAGGCCGCCGC
GCTCCGCCTCGAGAACTCCGAGCTCCGCGTCATCAACAACGACCTTGCCGGCCGCTTCGCCATGCTCGGCGGCAACCAGG
CCTCCGCCGTCGCGCTGGCCGGGCAGCTCCGCGGCCTCCACCTCGGGCAGATGCAGGTGCCGGTGCCGGTGCAGGCCGTG
GCGTCTCCACCGGTGCTGCCCATGCCCATGGCGG---GC-----------------------------------------
----------------------------------------------------CCCGCCTCCCCGGCCGAGAAGCACGCGG
TGATGCCCAAGAGCATCTCCATCCGCTCGACGGGCTACCTGAAGATGGCCAGGC---------GCGGCGGCAAGGGAAAG
CATGGCGTCACGAAGCCGATGGACGTCGGCTCGGTGAGACCATCGAATCCCAACCCCTCCACTCGTTCGACTGAATCTCG
CGCTTCTGTG----------CCATGCCGCTCACCTGTTCGACGATTTGCCGGTGTCTGTGCAATGCGAGCAGCAGCGCGT
GTTCGTGGGCGTGGACGTCGACGGCGCCAAGGCGGAGGAGCACCAGGGCGCCAGCGACGGCGGGGACAGGCGCGGCCAGG
TGGTCAAGTCCGCCAGCGGGCTGGAGTTCGAGGCGTACAGCCAGGGCATGTACAAGACGGAGCTGTGCAACAAGTGGGAG
GAGAGCGGGGCGTGCCTGTACGGCGACCAGTGCCAGTTCGCGCACGGCATCGCCGAGCTCCGCCCCATCATCCGCCACCC
GCGCTACAAGACCCAGGTCTGCCGCATGGTCATCGGCGGCGGCCTCTGCCCCTACAGCTACCGCTGCCACTTCCGCCACT
CCATCACCCGTGCCGACTACATCCCCCTCCTCCACCCCTGA---------------------------------------
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>chr1D_1_TraesCS1D01G421700
ATCCTTTGAACCAAAGAGGCCCCTAGAAATCGACAGGTGTCACCTGCCCGTGGCACCAAACCAAACGCGGCATTTTGAGC
CAAAGCGTGGCAGTTTGCTGGAATTTTGTGCGAAAGCGTCTGTTCGAATTTAGCCAGGCATTTGCTATTTTCCGCTTCTG
C---AAAAACATGCAGAGGAGGAGCACGCCGTAGTGCATCCCA-------------------------------------
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---------GAAAGGTGTCGATGAG----GGCAGCGTGCTCGCCAAGTCGCGGCGCAGGGTCACGGACAGCTGTCTCCAT
GGCAGGGCAGAAACACACCGCGCACACACACTGGACACACCTGCCCA-----CCCTGGTTCCGGAGACTGCTTGGCGGGC
CCCACCGGATCTCC------------------------ACGGTTATACCCAGTTAC----------------CCACCCCC
AGTGACGCCTTCCTCCGCCTCCTCTCTCTCTCTCTCTCC----ACCCTCCAA---GCCCAAATCGGCACCGGCCCGCCCC
AAATCCAGCGCCGCCGCATCTCTCCTCCAGCAGCAGGCGCGCAGGCGGCGCCGAACAGCAAGCCGGCAGGTGCGGT----
TCGCTCGATCCTCCTGAAATACTGCTTGGATCAAATACCCTCTCGCTTGAGTAATTGTTTCAGTCGCGTCGCTCGCGCGC
TTGA----TCAGTCAGAGGTTTCCACCCGTCGTTTTTGGGTGA-------------------------------------
------------------GGTTTTTTTTTTGTTTGTTTGTTCGATCGTTGGCCGCCATGGATCGGACGTTTCGCTGTGTT
TGTTCTCGC-----------------------------------------------------------GCGTGCGTGCGT
GCGTGTGTGATTTCGAGCCGCTTTTGCTGCTCTGGGAGGTGCGGCTTGCGATCGAGTTCCTTCCGATTTCTGAAACAGCC
GGTGCAGTGCAATGCTGGTGGTTTAATTCGTCCCGTGCTCGATCGTGAGAAGTTATTACGG-------------ATGCTA
GCGGCAGTTCCTCTGCTGCAGAGATTTACTGTATGTTTTACGGGATTTTTCTTCGA-ATATTTCTGACCTTCCGATCCGT
TCGGCTTCGCTGCAGGTTGTTCACGGGTGGGA-GCCGCCGCCATGCAGGAAGCTCCCCTCACTCCGGCCCACCCCGT---
---------------------------------------------------CGCCTTCGGGTTCTGGCCCAGACCGGTGT
GCTTCCCCACCGCCGACGGGCTCTTCTTCTACGGCGGCTGCACCCCCTTCGTCCCGTGCGCCAGCCCGTCGCCGATCGGC
ACCTCCTTCGTCCCGTGCGCCAGCCCGTCGCCGCTCGGCACCCCCTTCGTCCCGTGCTCCAGCCCGTCGCCGCTCGGCAG
CCCCTTCACGCCGAGCCCCAGGCTTCCGCCGCGCGCCGCCCCCTTCACCCAGAACCCCAGGCCGTCGCCGCGCGCCACCC
CGTTCACCCCGTTCACCCCG------------------------------------------------------------
---------------------------------------TTCACCCCGAGCCCCAGC-----------------------
----------------ACCTCGTCGCGCGGCACCCCCTTCACCCCGAGCCCCAGGGCGCACCCGTGCGGCACCCCCTGGT
CCTCCTCC---------TCCTCCGGCTCCCGCGTGGACGATGCGGCGGCCACGGAGCACCGCCTGCATCTGGCCCGCCTC
GCGCTCCAGTGCCAGGACGCCACCAACCGCTACGAGCTCTGCCTCAGCCACCTCGCCGACGCCGCGCGCGAGGCCGCCGC
GCTCCGCCTCGAGAACTCCGAGCTCCGCGTCATCAACAACGACCTTGCCGGCCGCTTCGCCATGCTCGGCGGCAACCAGG
CCTCCGCCGTCGCGCTGGCCGGGCAGCTCCGCGGCCTCCACCTCGGGCAGATGCAGGTGCCGGTGCCGGTGCAGGCCGTG
GCGTCTCCACCGGTGCTGCCCATGCCCATGGCGG---GC-----------------------------------------
----------------------------------------------------CCCGCCTCCCCGGCCGAGAAGCACGCGG
TGATGCCCAAGAGCATCTCCATCCGCTCGACGGGCTACCTGAAGATGGCCAGGC---------GCGGCGGCAAGGGAAAG
CATGGCGTCACGAAGCCGATGGACGTCGGCTCGGTGAGACCATCGAATCCCAACCCCTCCACTCGTTCGACTGAATCTCG
CGCTTCTGTG----------CCATGCCGCTCACCTGTTCGACGATTTGCCGGTGTCTGTGCAATGCGAGCAGCAGCGCGT
GTTCGTGGGCGTGGACGTCGACGGCGCCAAGGCGGAGGAGCACCAGGGCGCCAGCGACGGCGGGGACAGGCGCGGCCAGG
TGGTCAAGTCCGCCAGCGGGCTGGAGTTCGAGGCGTACAGCCAGGGCATGTACAAGACGGAGCTGTGCAACAAGTGGGAG
GAGAGCGGGGCGTGCCTGTACGGCGACCAGTGCCAGTTCGCGCACGGCATCGCCGAGCTCCGCCCCATCATCCGCCACCC
GCGCTACAAGACCCAGGTCTGCCGCATGGTCATCGGCGGCGGCCTCTGCCCCTACAGCTACCGCTGCCACTTCCGCCACT
CCATCACCCGTGCCGACTACATCCCCCTCCTCCACCCCTGATCGCTACACATGCCAGTGCTCCATCGCCGACGGCCACTC
ACTCTGCTCGCTTCACTCCCTCACTCCTTCTTCGGTTCCTCCCTTTC---GTAAAC--TATATATGCCACATTGGAAAAC
AAACTAAGAACTCCAAAATGGGAGACCTAAATAAGGCAAATTTT-GATTTAGATGCACAGA-GCAAACGGCACTTCATT-
---AGAGTTGGCACATGCAGGGCAAAAATGTGAATAGAGCTATTTAAGCTGCTTTA---TTG------TTACATGGGGAT
TGAACTGGGATTCTGGATCATTAGAGAGGTGAATTTCTATATGTTGGGGT-GTTCTTTCTTACATGGTTTGTTATATA-G
TC-ATTGGTTGAAGTTACATGATCTTTGTTCCTTAGTCGCGTTCCGAGAGGAAATTATGGGCATAGCGATGTAACTAAAT
CTCA-----------------ATTCGTGTTGTTTTTGTTCTGTCTTGTGGCAGGAAGATCAGGCTACTTCAAACTTCAGT
TGCATTGTTTTTT-GGACAATTGAAGTAATTTTTTAGGAGCATGTCAAGTATAGATGTTAATTATATGACTTGCATATTG
TTTATATTGCTCTGTTTTCGCCTGATCTTTAAGATTGATGTTCTAGTTCCTAAATGTAGTTTGTCAGTTTAGGACTGCAT
TAGTTGGGCTTATAAGGAAGATGGCGGACAATTATGCTTGAGAGTGTCTATTCCATAAACGGTGAGCAAGATCATCTTCC
ACACCTAGCCTAAAAACACAGCTGTTTGCTAAAAACTAAATTTTAGGCTTTTTTTGTCAAAAAAGGCTCCATCAACTAAC
CCGAACCTATATGGATGCTATTTTATAGGCTATAGCCTATATTTTTCTACCCAATTGGTTAATATACCAATCCAAATGAA
CAAAGCCTAAAACCAAAGTCGCGGTCGTGAGAAGCCAACTGCTACCC-CTAAACTTTCACCACCACAGTCGCCGCCTAAC
CCGCCTCCATCCCAGCAAATTCAGGTCATCGTCGCCACCATCC
>chr1B_1
ATCCTTGGAAGCAAAGAGGCCCGTAGAAATCGATCGGTGTCACCTGCCCGTGGCACCAAACCAAACGCGGCATTTTCAGC
CAAAGCGAGGCAGTTTGCTCAAATTTTGGGCCAAAGTGCCAGTTCGAATTTAGGCATTCAT-TGCTATTTTTCGTTTGTT
C---AAAAACATCCCGAGGAGGAGCACGCCGGAGTGCATCCCAAGAAAGCGTCGCTGAGGGCAGCATGCTCGCCAAGTCG
CGGCGCAGGGTCACCGACAACTGTCTAGTGCAGGGCAGAAACACACCCCCCGCGCGCACACTGGACACACCTGCCTACCC
CTGGTTCCGGAGACTGCCGGGCAGGCCCCATCGGATCTTCTCGACCCTCGCACCACGTGCCGCGCCGAGGCCAGGCCACG
GTTATACCCCACCACGAGTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGTTCATTCGTCGCCATGGATGGGGCATTTCGGTGTGTT
TGTTGCTGTCATCGGAGGTGGGGATTGCGATGGAGTTCCTTCTTGATTTCTGAAATAATTGTGCAATGCTGGGCGGTTTA
ATTCGTCCTGTGCTCGATCGTGGGCGGTTATTACGGATGCTAGCCGCAGTTTCTTGGATGCTAGCAGCAGTTTCAGCTGC
ACTCCTTTTCTTCCTCAGTCTCTTCAACCCCTTGATCCGCCTCTGCAACTTGACTTCACCACACGGCCAGAGAATTCCTG
ATCATAAAGAATGCATGTCGGCTGCCACCGGAGCTGCGGACTTGTTTCACGGTGATCCTCCTGCTGCTGCTGCTGCTGAC
CTCCGCCGCCGCCGGAGCTGCCGACGACGCGGCCGGTCCCGCCGGAGCTTTGCGGACTGGATTTCATTTCCAGCTGCGCA
GGAACTGGATGAATGATCCGAATGGTATATATCTCGTTCTTTTCCGCACAAATTATCGCCCGGTCTGGTTATTTGCTTTG
CCCGCTCGCCGTTCTTCGCCGGTGTTTAGATCTCCTTCATCCATTTCGTTCTGCACTTTAGGGTGTGTTTGGTTCCTTGG
GCCGCACCTGGCTCACACCCGGCATGTAAATTCTAGCCTGTTTGGTATCCTATTTGATACTCCCTTTGTTCCAAATTACT
CGTCGTGGTTTTAGTTCCGGGGGAGGGCCCCCCGCCCCAACATAGCTCGCCAGTGTGCATGTGCATGAGACTCATGGGTT
TGGAGGGGTGGGCATTTTAACCAAAACCAAACAACCAAATCAACAAAATCAGGACCGGGCCAAAATAGGTTCACCAGATT
CTTGGTTGCGGAGTTTGAGAAGGAGGTAAATGCACCGGTGCTTCCACTTGTCGTGAATGATCACTTTGGTGCTTGCAGTT
GTGGAATATATAAAAGTTTTTCAAAAACTTTGCTTTTGCATGAAATACGACGCACCCATCGTCTGTAGGCATTAACTTTG
TTGAGGTGGGGCCGTATCTCCATCCGTAGCCATCTATGTTGCCTACATGTCATCACGTGGGTCCAATCTGTCAGCAAGCA
ATACATAAAATTGAAATTGATAAAGTCACTAGGATTCGAACCAGCATCCTGTTGCTATCCCACCCGCGTAGCTAACTACC
ACTCCCGATGACACTTCATGTCTTACAAGGATGGATAAAAACGGCGAAGATTTGTATTAAACACGTGAACACTTTCTAAA
ACTATACAAATATTTTCATAATTCATAATTATTTATTTAATTACGTGGGTAATTTTATGAAATAATATGTGAATATTTTT
ATCATCAAGAATCAATATTAATTTGTTGCAAGGGTCATGCATGGAGCATAGCTTACAAATCACATTACAAAGAACAATAG
GTCCAAATTCTGAAATTTCTCAAGGAGATCATACCTTCGGGATGACCACATTGGCAATTCAATTTTATGGTTTGTGGCAT
ATCTTCTCCATTCAGGAAGCTTAGACGGCTTTCATGGCTAACTCCTATTTAGCGCCTATAGCGCCAGTTAGAGGAAAATT
GTATACATCACGCTACCTCATTCCTGTGCTAGATTACTTGGGCCGACTCATGAATACAGGTTCCTGTGAAGCTCCAATGG
TAGAGCTTCCAATCACTGTTTTTTGTTCATTTTTCGTTTCTGGTTTTTTAGGGCCTGTTTGGATCAGTGCCAAAACCAAC
CCAGCCAATTTATTTGCGTTGACTGTTGTGTGGGCAACTGTCTGGAAAGGAGCCAATTTTTTGGTGCGCCCTGACTCGCC
CATCCTTCCATTTCACTTTGCGTGGATTTTGATGCCAATTGTTGGCAAATCGTGGGTGGGCGCTGGCTTCGCCAATTTTT
TGGCGTGCCCGGGCATTAGCAGGGCTAGCTCGGGCTAAATCCAAACACAACCTTAGCTCAGTTTTTTCGATGTTTTATTT
ATTTTTCAATTTTTTCTTTAATTTTTATTTTCTAAATACATGAACCTTTTTTCAAATTCATGAAAGTTTCCAAATTTTGA
ACTTTTTCAAACTCAAAATATTTTTCAAAATGATGGACCTTTTCAAATTCATAAACCTTTCTTAAATTCACAAACATTTT
AAAAATTTGCAAACGTTTTCAAATTTGAGTTTTTTCCCCAAACTCGTGCACTTTTCTTAAACTCAAGAAATTTTACAAAA
ATTGGTCAAGTCATTTCAAATCCATAATTTATTTCTGATTTTACAATTTTTTTCTGAAATACATGATTTTTTTTTCATTT
TCACTATATTTTTTGCATTTTCAAACATTTTTTAAATTCATGAACTTGTGTTTCCAAATTCCATGCACTCTTTTCATGTT
TAATTTTTTCGAAAGTTAATGGTCAACGACCGTGGTCAATGGTCATTGGTTACCAATCGATGGTCATAGTCAATGGCAAC
AGACTGAAAAATCGGTGCTCAAATGCTCCATGGGCCGCGACACACACACCTCGTGGGTGAGCGCCAGCAGCCTAAACGAA
TGCTATAAGCGCCAATTAAGAGCTTTGGCTATCATGATATAATCCTTAATCAAGGACAATGCTCTTGCTAAAGGCCGACA
ATAAGGGCTTTTGAAGGGTCCATATCTAATAGTGTTTTGCCCAGTTTCAACTTCACAGAAGAAAAACCCTGCCTTTGCCA
TGTGTTGCGGATACGTTGAGGGTCTTTTCGATTCATATAACTCGAAAAATACGGGAATATAAAAAATGATTATAGTGTTA
TGTTCACTTGAATCTTACGAGATAGCGTGTGCACCTATTTAGTTCAAAAGGAATTTTATAACAAATTTTGATGGTTATAT
CCCTTAGAAGCTCTTCTCTACACAATTTGTTTTCTCCGTAGAATCGGAACACCGTATGATTTTCTTCATATAGTTTAGTT
CACATGCAGTTCTAAATGGAAAAACTTCCCATCTATCTCCTCTAGAAGAAAAATGCCTCCTGTGCCTATTACAACTATGG
CGTTGCTATTTTTCGTCTGTTGTTGAAGAAAAATGGCTTGAATCTAGCCAGGCATTGCTATTTTTCGTTTGTTGATGAAA
AGCATCCCAAAAAGGCGTCGCTGAGGGCAGGCAGCGTGCTCGCCAAGTCGCGGCGCAGGGTCACGGACAGCTGTC--CAG
TGCAGGGCAGAAACCCACCGCGCGCGCGCACTGGACACACGCACCTGCCTGCCCCTGGATCCGGAGACTGCCCGGCGGGC
CCCACCGGATCCCCTCGACCCTCGCGCCGCGTGCCGCGCCGAGGCCAGGCCACGGTTACAGTTA----CACCCCGCCCCG
AGTGACGTCATCCTCCGCCTCCTCTCTCTCTCTCTCTCCCCGCACCCTCCAC---GCCCAAATCGGCACCGAGCCGCCCC
AAATCCGGCGCCGCCGCCGCGTCCCTC------------CTCCGGCGGCGCTGCTCGACCGACTCGCAGGTGCGGTTCCA
TCGATCCATCCTCCCGCACCGCTGCTTTGGATCACTGCTCTCTCGCTTGGGTAACTGTTTCAGTCGCGTCGCTCTCGCGC
TTGATCAGTCAGTCGGAGGTTGCCACCCGTCGTTTCCGGGGGTGCATTGCGAGCGTGCGGTGTCGGCGCTCCCCGCTCG-
CGCCGTGTCGCTGTTGGTGGATTTTTTTTTTTTGGT--------TCGTTCGTCGCCATGGGTCGGCCGTTTCGTTGCGTC
TGTCGCTGTCGATGCGAGATGGTTTGTGGGGGATCAACTTTTGATCCGTCGTCTCTGTTCTCGTGCGTGCGTGCTTGCTT
GCGGGTGTGATTCCGAGCCGCTTTTGA------------------------------TCCTTGAGATCTCTGGAAAGTGC
A----AATGCTG----GGTGGTTTAATTCGTCCCGTGCTTGATCGT-------------GG-------------ATGCTA
GCGGCAGTTCCTCTGCTGCGGAGATTTATTTAATTATTTACGGGATTTTTCTTCGG-ATATTTCTGACATTCCGATCCGT
TTGGCTTCGCTGCAGGTTGTTCACGGGTGGGA-GCCGCCGCCATGCAGGAAGCTCCCCTCGCTCCGGCCCACCCCGTG--
----------------------------------------------------GCATTCGGGTTCTGGCCCAGACCCGTGT
GCATCCCCGCCGCCGACGGGCTCTTCTTCTACGGCGGCTGCACCCCCTT-------------------------------
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------CGCCCCGTGCCCCAGCCCGTCGCCGCTCGGCACCCCCTTCGTCCCGTGCGCCAGCCCGTCGCCGCTCGGCACCC
CCTTTGTCCCGTGCGCCAGCCCGTCGCCGCTCGGCACCCCTTTCGTCCCGTGCTCCAGCCCGTCGCCGGGCGGCAGCCCC
TTCACGCCGAGCCCGAGGCTTCCGCCGCGCGCCGCCCCCTTCACCCCGAGCCCCAGGCCGTCGCCGCGCGCCACCCCCTT
CACCCCGAGCACCGGGACCTCGTCGGGCAGCACCCTCTTCACCCCGAGCCCCAGGACGCACCCGAGCGGCACCCCCTGGT
CCTCCTCC---------ACCTCCGGCTCCCGCGTCGACGATGCGGCGGCCACGGAGCACCGCCTGCATCTGGCCCGCCTC
GCGCTCCAGTGCCAGGACGCCACCAACCGCTACGAGCTCTGCCTCAGCCACCTCGCCGACGCCGCGCGCGAGGCCGCCGC
GCTCCGCCTCGAGAACTCCGAGCTCCGCATCATCAACAACGACCTCGCCGGCCGCTTCGCCATGCTCGGCGGCAACCAGG
CCTCCGCCGTCGCGCTCGCCGGGCAGCTCCGCGGCCTCCAGCTCGGGCAGA------------TGCCGGTGCAGGCCGTG
GCGTCTCCACCGGTGCTGCCCATGCCCATGGCGG---GC-----------------------------------------
----------------------------------------------------CCCGCCTCCCCGGCCGAGAAGCACGCGG
TGATGCCCAAGAGCATCTCCATCCGCTCGACGGGCTACCTGAAGATGGCCAGGC---------GCGGC---------AAG
CATCGCGCCACGAAGCCGATGGACGTCGGCTCGGTGAGACCATCGAATCCCAACCCCTCCACTCGTTCGGCTGAATCCCG
CGCTTCTGTG----------CCATGCCGCTCACCTGTTCGACGATTTGCTGGTGTCTGTGCCATGCGAGCAGCAGCGCGT
GTTCGTGGGCGTGGACGTGGGCGGCGGCAAGGCGGAGGAGCACCAGGGCGGCAGCGCCGGCGGCGACAGGCGCGGCCAGG
TGGTCAAGTCGGCCAGCGGGCTGGAGTTCGAGGCGTACAGCCAGGGCATGTACAAGACGGAGCTGTGCAACAAGTGGGAG
GAGACCGGGGCGTGCCTGTACGGCGACCAGTGCCAGTTCGCGCACGGCATCGCCGAGCTCCGCCCCATCATCCGCCACCC
GCGCTACAAGACCCAGGTCTGCCGCATGGTCATCGGCGGCGGCCTCTGCCCCTACGGCTACCGCTGCCACTTCCGCCACT
CCATCACCCCCGCCGACTACATCCCGCTCCTCCACCCCTGATCGCTACACATGGCAATGCTCCATCGCCGACGGCCACTC
ACTCTGCTCGCTTCACTCC--------TTCCTC-------CCCTCTC---GTAAAC--TATCTATGCCACATTGGAAAAC
AAACCAAGAACTCAAAAAGGGGAGACCTAAACAAGGCAAATTTT-GATTTAGATGCACAGA-GCAAACGACACTTGAGTC
AAGAGAGTCAAGACATGCA-GGCAAAAATGTGAATA--------------------------------------------
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>chr1A_127
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----------------------------------------------AACTTAGCCAGGGAT-TGCTATTTTTCGTTTGTT
GATGAAAAGCATCCCGAGGAGGAGCACGCCGCAGTGCATCCCG-------------------------------------
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---------AAAAGGCGTCGCTGAG----GGCAGCGTGCTCGCCAAGTCGCGGCGCAGGGTCACCGACAGCTGTC--CAG
GGCAGGGCAGAAACCCACCGCGCGCA--------------------------CCCTGGTTCCGGAGACTGACGGCCGGGA
CCCACCGGATCTTCTCGACCCTCGCGCCGCGTGCCGCGACGGTTATACACAGTGGCCAGGACGGCACCCACTCCACACCC
GGTGACGTCCTCCTCCGCCTGCCCCC-CTCTCTCTCTCC----ACCCTCCACGCGGCCCAAATCCGCACCGGTCCGCCCC
AAATCCGGCGCCGCCACATCCCTCCTCCGGCGGCACGCACGCAGGCGGCGCTGCTCGACCGACTCGCAGGTGCAGTTCCA
TCGATCGATCCTCCCGCACCGCTGCTTGGACCA----CTATCTCGCTCGATTAATTGTTTCAGTC-----------GCGC
TTGA----TCAGTCAGAGGTTTCCATCCGTCGTTTTGGGGGGCGCAAT----GCGAGCAGTGCCGGTGTTCCCCGCTCGT
CGCCGTGTCTCTGTTGATGGATTTTTTTTTTTTTGGTTCGTCGTCACCGTGAATGGGGCG----------TCGCTGTGTT
TGTTGCTGTCGTCGCCATGA------------------------------------------------------------
---------------------------------------------TTGCGATCGAGTTCCTTTTGATTTCTGAAACAGCG
GGTGCAATGCTG----GGTGGTTTAATTTGTCCCGTGCTCGATCGT-------------GGGCGCCTACTACGGATGCCA
GCGGCAGTTCCTCTGCTGCAGAGATTTATGT----TTTTACGGGATTTTTCTTCTA-ATATTTCTGACATTCCGATCCGT
TTGGCTTCGCTGCAGGTTGTTCACGGGTGGGA-GCCGCCGCCATGCAGGAAGCTCCCCTCGCTCCGGCCCACCCCGT---
---------------------------------------------------CGCCTT-----------------------
----------------CGGGCTCTTCGTCTACGGCGGCTACT--------------------------------------
----------------------------------------CCCCCTTCGTCCCGTGTCCCAGCCCGTCGCCTCTCGGCAT
CCCCTTCGTCCCGTGCCCCAGCCCGTCGCCGCTCGGCATCCCCGTCGTCCCGTGCCCCAGCCCGTCGCCGCTCGGCACCC
CCTTCGTCCCGTGCGCCAGCCCGTCGCCGCGCGGCACTCCCTTCGTCCCGTGCGCCAGCCCGTCGCCGCGCGGCAGCCCC
TTCACGCCGAGCCCCACGCTTCCGCCGCG---CGCCCCCTTCACGCCGAGCCCCAGCACCTCGTCGCGCGGCT-------
--------------------------------CCCCGTTCACCCCGAGCCCCAGGACGCACCTGAGCGGCACCCCCTGGT
CCTCCTCC---------ACCTCCGGCTCCCGCGTCGACGATGCGGCGGCCACGGAGCACCGCCTGCATCTCGCCCGCCTC
GCGCTCCAGTGCCAGGACGCCACCAACCGCTACGAGCTCTGCCTCCGCCACCTCGCCGACGCCGCGCGCGAGGCCGCCGC
GCTCCGCCTCGAGAACTCCGAGCTCCGCGTCGTCAACAACGACCTCGCCGGCCGCTTCGCCATGCTCGGCGGCAACCAGG
CCTCCGCCGTCGCGCTGGCCGGGCAGCTCCGCGGGCTGCACCTCGGGCAGATGCAGGTGCCGGTGCCGGTGCAGGCCATG
GCGTCTCCACCGGTGCTGCCCATGCCCATGGCGG---GC-----------------------------------------
----------------------------------------------------CCCGCCTCCCCGGCCGAGAAGCACGCGG
TGATGCCCAAGAGCATCTCCATCCGCTCGACGGGCTACCTGAAGATGGCCAGGCGCGGCGGCAAGGGA---------AAG
CATCGCGTCACCAAGCCGATGGACGCCGGCTCGGTGAGACCATCGAATCCCAACCCCTCCACTCGTTCGACTGAATTCCG
CGCTTCTGTG----------CCATGCCGCTCACCTGTTCGACGATTTGCTGGTGTCTGTGCAATGCGAGCAGCAGCGCGT
GTTCGTGGGCGTGGACGTGGACGGCGGCAAGGCGGAGGAGCACCAGGGCGGCAGCAGCGGCGGGGACAGGCGCGGCCAGG
TGGTCAAGTCCGCCAGCGGGCTGGAGTTCGAGGCGTACAGCCAGGGCATGTACAAGACGGAGCTGTGCAACAAGTGGGAG
GAGAGCGGGGCGTGCCTGTACGCCGACCAGTGCCAGTTCGCGCACGGCATCGCCGAGCTCCGCCCCATCATCCGCCACCC
GCGCTACAAGACCCAGGCCTGCCGCATGGTCATCGGCGGCGGCCTCTGCCCCTACAGCTACCGCTGCCACTTCCGCCACT
CCATCACCCCTGCCGACTACTTCCCCCTTCTCCACCCCTGATCGCTACACATGGCACTGCTCCATCGCCGACGGCCACTC
ACTCTGCTCGCTCCACTCCCTCACTCCTTCCTCGGCTCCTCCCTTTC---GTAAAC--TATATATGCCACATTGGAAAAC
AAACCAAGAACTCGAAAATGGGAGACCTAAATAAGGCAAATTTT-GATTTAGATGCACAGA-GCAAACGCCACTTCATT-
---AGAGTTGGCACATGCAGGGCAAAAATGTGAATAGAGCTATTTAAGCTGCTTTT---TTG------TTACATGGGGAT
TGATCTGGAATTCTTGATCATCAGAGAGGTGGATTTTTATATGTTGGGGGCGTTCTTTCTTACATGGTTTGTTATATTTG
CC-ATTGGTTACAGTTACATGATCTTTGTTCCTTAATCATGTTTTGAGAGGAAATTATCAGCGTAGCGACGTAACTAAAT
CTCA-----------------ATTCGTGTTATTTTTGTTTTGTCTTGTGGCAGGAAGATCAGGCTACTTCAGACTTCAGT
TGCATTGTTTTTTTGGACAATTGAAGTAATTTTATAGGAGCATGTCAAGTATAGATGTTAATTATATGACTTGCATATTG
TTTATATTGCTCTGTTTTCTCCTGATCTTTAAGATTGATGTTCTAGTTCCTAAATGTACTTTGTCAGTTTAGGACTGCAC
TGGTTGGGTTTATAAGGAAGATGACGGACAATTATGCTTGAGAGTGTCTATTCCATAAACGGTGAGCAAGATCATCTTCC
ACACCCAGCCTAAAAAACACAGCCG---------------------------TTTGTCAAAAAATGCTCCATCAGCTAAT
CCGAACCTATATGGATGCTATTTTTTAGGCTATATCCTATATTTTTCTACCCAATTGGTTAATATACCAATCCAAATGAA
CAAAGCTTAAAACCAAAGTTGCGGTCGTGAGAAGCCAATTGCTACCCCCTGAACTTTCACCACCGCAGTCGCCGCCTAAC
CCGTCTCCGTCCCAGCCTATTCAGGTCGTCATCGCCACCATCC
>chr1A_869
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-------------------------------------------------------TTACGG-------------ATGCTA
CCAGCAGTTCGTGTGCTGCAGTAGCG-----ATTTATTTATGGGATTTTCGTCCAATATACTTGTGACATTCCGATCCAT
TTGGCTTCGCTGCAGGTGCAGGGACCCGCCGCCGCCGCCGCAATGCAGGAAGCTCCCCTCCACCCGGCCCACCCCGTGCC
CTTCGGCCCCAGACTGCCGGCCTTCCGCGATCGCCGCCTCTGCCCCCCCACCGCCGA-----------------------
----------------CGGGCCCTTCTTCTACGGCGGCT-----------------------------------------
----------------------------------------------------------------------------GCAC
CCCCTTCGTCCCGAGCCCCAGGCCGTCCCCGCTCGGGCGCGGCA------------------------------------
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----------------------------G---CCCCCCCTTCACCCCGAGCCCCAGGTCCTCGTCGCC------------
------------------------------------------------------------------CGGCACCCCCTGGT
CCTCCTCGGCCTCTTCCTCCTCCGGCTCCCGCGTCGACG---CGGCGGCCACGGAGCATGGCCTGCGCATGGCCCGCCTC
GCGCTGCAGTACCAGGACTTCGCCAACCGCTACCAGCTCTGCCTCTCCCACCTCGCCGACGCCGCGCGCGAGGCCGCCGC
CATCCGCCACGACAACTCCGGCCTCCGCCTCGCCAACAACGTCCTCGCCAGCCGCTTCGCCGTGCTCGGCGGCAACCAGG
CCTCAGCCGTCGCGCTGGCCGAGCAGCTCCACCGCCTCCACCTCGGGCAGATGCAGGCGC------------AGGCAGTG
CCCGCTCCCCCGGTGCTGCCCATGCCCATGGCGCCGCGCCTCGCCTCCTCGGCCGAGAAGCTGCGCCCCCTCCACCCCGG
GCAGATGCAGGCGCAGGTCGTGCCGGCTCCCCCGCCGATGCCCAGGGCGCGGCCCGCCTCCCCGGCCGAGAAGCACGCGG
CGATGCCCAAGAGCATCTCCATCCGCTCCAACGGCTACCTGAAGATGGACAGGA---------ACGGC---------AAG
CATCGCGTGACGGCGCCGGTGAACGTCGGCTCGGTGAGATCATCGAAACCCAACCCCTCCATTCCTGCAACCCAATCCCG
CGGCTCTGTGCCAATCCAGTCCATGACGCTCACGTGTTCGAGCATTTGCTTGTGTCGATGCAATGCGAGCAGCAGCGCGT
GTTCGTGGGCGTGGACG------GCGCCAAGGCGGAGGAGCACCAGGGCC------GCGGCGGGGAGAAGGGCGGTCAGG
TCGCCACGGCTGCCGACAGGCTGCAGTTCGAGGTGTACAGCCAGGGCATGTTCAAGACGGAGCTGTGCAACAAGTGGGAG
GAGACCGGGGCGTGCCCGTACGGCGACCAGTGCCAGTTCGCGCACGGCATCGCAGAGCTCCGCCCCATCATCCGCCACCC
GCGCTACAAGACCCAGGTCTGCCGCATGGTCATCGGCGGCGCCATCTGCCCCTACGGCCACCGCTGCCACTTCCGCCACT
CCATCACCCCCGCTGACTACATCCCCCTCCTCCACCCCTGATCGCTACACATGGCACTGCTCCATCGCCGACGGCCACTC
ACTCTGCTCGCTTCATTCCCTCACTCCTTCCTC-------CCCCTTC---ATAAACTATACATATGCCACATTGGAAAAC
AAACCAAAAACACCAAAATGGGAGACGTAAATAAGGCAAACTTT-GATTTAGATGCACAGAAGCAAACGGCACTTGAGTC
AAGAGAGTTAGGACATGCA-GGAAAAAATGTGAATA------TTTGTGCTGCTTATTGGTGGGTTACTTTACATTGGGAT
TGATCTGGGATTCTGGATCATCAGAGAGGTAAA---TTATGTGTTGGGGG-GTTGTTTCTTACATGGTCTGTTATATA-G
CCAATCGGTTACATTTACATGATCTTTGTTTCTTAGTTAATTTTCAAGAGGAATTTATGGACGTAGCCTTGTCAACAAAT
CTGTTAGTATTTGAGTACACCATTGGTGTTATTTTGATACTGTCTTGTGGAAGGAAGTTCAGGCTACTTGAGACTTCAGT
TATATTGTATTTCTGGACAATTGGAGAAAT--------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------
>chr1D_1320
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CCCCTTCGTCCCGAGCCCCAGGCCGTCCCCGCTCGGGCGCGGCA------------------------------------
--------------------------------------------------------------------------------
----------------------------G---CCCCCCCTTCACCCCGAGCCCCAGGTCCTCGTCGCC------------
------------------------------------------------------------------CGGCACCCCCTGGT
CCTCCTCCGCCTCCTCCTCCTCCGGCTCCCGCGTCGACG---CGGCGGCCACGGAGCATGGCCTGCGCATGGCCCGCCTC
GCGCTGCAGTACCAGGACTTCGCCAACCGCTACCAGCTCTGCCTCTCCCACCTCGCCGACGCCGCGCGCGAGGCCGCCGC
CATCCGCCACGACAACTCCGGCCTCCGCCTCGCCAACAACGGCCTCGCCGGCCGCGTCGCCATGCTCGCCGGCAACCAGG
CCTCCGCCGTCGCGCTGGCCGACCAGCTCCACCGCCTCCACCTCGGCCAGATGCAGGCGC------------AGGCAGTG
CCTGCTCCCCCGGTGCTGCCCATGCCCATGCCGC---GCCTCGCCTCCTCGGTCGAGAAGCTCCGCCCACTCCACCCCGG
GCAGATGCAGGCGCAGGTCGTACCGGCTCCCCGGCTGATGCCCATGGCGCGGCCCGCCTCCCCGGCCGAGAAGCACGCGG
CGATGCCCAAGAGCATCTCCATCCGCTCCAACGGCTACCTCAAGATGGACAGGA---------ACGGC---------AAG
CATCGCGTGACGAAGCCGGTGAACGTCGGCTCGGTGAGATCATCAAAACCCAACCCCTGCATTCCTCCGACTCAATCCCG
CGGCTCTGTGCCAATCCAGTCCATGCCGCTCACCTGTTCGAGCATTTGCTTGTGTCGATGCAACGCGAGCAGCAGCGCGT
GTTCGTGGGCGTGGACG------GCGCCAAGGCGGAGGAGCACCAGGGCGGCGGCTGCGGCGGGGAGAAGGGCGGTCAGG
TCGCCACGGCTGCCGGCGGGCTGCAGTTCGAGGTGTACAGCCAGGGCATGTTCAAGACGGAGCTGTGCAACAAGTGGGAG
GAGACCGGGGCGTGCCCGTACGGCGACCAGTGCCAGTTCGCGCACGGCATCGCAGAGCTCCGCCCGATCATCCGCCACCC
GCGCTACAAGACCCAGGTCTGCCGCATGGTCATCGGCGGCGCCCTCTGCCCCTACGGCCACCGCTGCCACTTCCGCCACT
CCATCACCCCCGCCGACTACATCCCCCTCCTCCACCCCTGATCGCTACACATGGCAGTGCTCCATCGCCGACGGCCACTC
ACTCTGCTCGCTTCATTCCCTCACTCCTTCCTC-------CCCCTTC---ATGAACTATATATATGCCACATTGGAAAAC
AAACCAAAAACACCAAAATGGGAGACGTAAATAAGGCAAACTTT-GATTTAGATGCACAGAAGCAAACGGCACTTGAGTC
AAGAGAGTTAGGACATGCA-GGCAAAAATGTGAATA------TTTGAGCTGCTTATTGGTGGGTTACTTTACATTGGGAT
TGATCTGGGATTCTGGATCATCAGAGAGGTAAA---TTATGTGTTGGGGGGGTTGTTTCTTACATGGTTTGTTATATA-G
CC-ATCGGTTACATTTACATGATCTTTGTTTCTTAGTTGTTTTTCAATTGGAAATTATCGACTTAGCCTTGTCACCAAAT
CTGT---TATTTGAGTACACCATCGGTGTTATTTTGGTACTGTCTTGTGGAAAGAAGTTCGGGCTACTTCAGACTTCAGT
TGTATTGTTTTTCTGGACAATTGGAGAAAT--------------------------------------------------
--------------------------------------------------------------------------------
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>chr1B_1320
CCCCCT--------------------------------------------------------------------------
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-----TCGTCCCGAGCCCCAGGCCGTCCCCGCTCGGGCGCGGCA------------------------------------
--------------------------------------------------------------------------------
----------------------------G---CCCCACCTTCACCCCGAGCCCCAGGTCCTCGTCGCC------------
------------------------------------------------------------------CGGCACCCCCTGGT
CCTCCTCCGCCTCCTCCTCCTCCGGCTCCCGCGTCGACG---CGGCGGCCACGGAGCACGGCCTGCGCATGGCCCGCCTC
GCGCTGCAGTACCAGGACTTCGCCAACCGCTACCAGCTCTGCCTCTCCCACCTCGCCGACGCCGCGCGCGAGGCCGCCGC
CATCCGCCACGACAACTCCGGCCTCCGCCTCGCCAACGACGTCCTCGCCGGCCGCTTCGCCATGCTCGCCGGCAACCAGG
CCTCCGCCATCGCGCTGCCCGACCAGCTCCGCCGCCTCCACCTTGGGCAGA---------------------------TG
CCTGCTCCCCCGGTGGTGCCCATGCCCATGCCGC---GCCTCGCCTCCCCGACCGAGAAGCCCCGCCCCCTCCACCTCGG
GCAGATGCAGGCGCAGGTCGTGCCGGCTCCCCCGATGATGCCCATGACGCGGCCCGCCTCCCCGGCCGAGAAGCACGCGG
CGATGCCCAAGAGCATCTCCATCCGCTCCAACGGCTACCTGAAGATGGCGAGGA---------ACGGC---------AAG
CATCGCGTGACGGCGCCGGTGAACGTCGGCTCGGTGAGATCATCGAAACCCAACCCCTCCATTCCTCCGACTCAATCCCG
CGGCTCTGTGCCAATCCAGTCCATGCCGCTCACGTGTTCGAGCATTTGCTTGTGTCGATGCAATGCGAGCAGCAGCGCGT
GTTCGTGGGCGTGGACA------GCGCCAAGGCGGAGGAGCACCAGGGAGGCGGC------GGGGAGAAGGGCGGTCAGG
TCGCCACGGCTGCCGGCGGGCTGCAGTTCGAGGTGTACAGCCAGGGCATGTTCAAGACGGAGCTGTGCAACAAGTGGGAG
GAGACCGGGGCGTGCCCGTACGGCGACCAGTGCCAGTTCGCGCACGGCATCGCCGAGCTCCGTCCCATCATCCGCCACCC
GCGCTACAAGACCCAGGTCTGCCGCATGGTCTTCGGCGGCGCCCTCTGCCCCTACGGCCACCGCTGCCACTTCCGCCACT
CGATCACCCCCGCCGACTACTCCCCCCTCCTCCACCCCTGATCGC-----------------------CGACGGCCACTC
ACTCTGCTCGCTTCACTCCCTCACTCCTCACTCCTTCCCCCCCCCTTCGTATAAACTATATATATGCCACATTGGAAAAC
AAACCAAAGACACCAAAATGGGAGACGTAAATAAGGCAAAATTTTGATTTAGATGCACAGAAGCAAACGGCACTTCAGTC
AAGAGAGTTAGGACATGCA-GGCAAAAATGTGAATA------TTTGAGCTGCTTTT---TGGGTTACTTTACAATGGGAT
TGATCTGGGATTCTGGATCATCAGAGAGGTAAA---TTATGTGTTGGGGG-GTTGTTCCTTACATGGT------------
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-------------------------------------------
>SNPs
------S---S-----------S----------SS-----------------------------------------S---
-------S-----------SS-------S--S----S-S-S--------------------S---------S--S--S-S
------------S-S----------------S------------------------------------------------
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---------S-----S----S------------------------------------------------------SS--S
--------------S--------S---S------------SSS--SS------------------------SS-------
------------------------------------------------S----SS-------------------------
-------S-S-----------------------------------------S--------------------S-------
------S-------------S-------S--S---S--S------------S-SS-SS-SSS-SS---------------
---S----------S-S-SSS---------S---S-S-S-----------------------------------S-----
------------------------------------S---S-S-------------------------------------
--------------------S---------S-------SS---S-----S-S--------S----S--------------
----SSS-S-----------------------------------------------------------------S---S-
---S--------S-------------SSSSSSSSSSSSSSSSSSS-----------------SS----------------
------S---SSSSSS------------------------------SSSSSSSSS-------------------------
----------------------------S-SS--S---------------------------------S-----------
-S----------------------------------------------------------S-------------------
---------------------------------------------------------------------------S----
--S-----S----------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------SS-------------S-------S
-------S-S-------------SSS------S--S-S--------SS--S-SS------S----------S--S-----
-S---SS-----S-S--SSS------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------S--S--------------------------S--------S---------------
----------------------------------S---------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------S----------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------SSSSSSSSS---
---S-------------------------------------------------------------------------S--
-------------------------------------------------S------------------------------
------------------S-------------------------------S-----S-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------S-------------------------------------------S--------------------------
------------------------------S-------------------------------------------------
----S---------------------------------------------------------------------------
-------------------------------------------------------S------------------------
---S-----------------S--------------S------------S------------------------------
S---------SS---------------------------S---S------------------S-----------------
------------------------------S----------------------------------------S--------
---------------------------------S----------------------------------------------
-------------------S--------------------------------------S--------------------S
-S------S--------------S--------------------------------------------------------
-----S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------S---------S----S
------------------------S---------S---------------------------------------------
------S------------S------------------S-----------S-------------S---------------
---S----S-------SS---------S--S------------
>forward_3701
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-GCATCCCAGAAAGGTGTCGA-----------------------------------------------------------
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>reverse_5836
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---------------------------------------------------------------------------GAAAG
CATGGCGTCACGAAG-----------------------------------------------------------------
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>forward_4036
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----------------CATCTCTCCTCCAGCAGCAG--------------------------------------------
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-------------------------------------------
>reverse_6431
--------------------------------------------------------------------------------
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------------------------------TTCGGTTCCTCCCTTTCGTA------------------------------
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-------------------------------------------
