>input_sequence_53452
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-----------------ATGCCGGTCAGCAGGATCGCCGTGGGGAGCCACCGTGAGGTGTACGAGGTGGGCGCCCTCAAG
GCGGCGCTCGCCGAGTTCATCTCCACGCTCATCTTCGTCTTCGCCGGCCAGGGCTCCGGCATGGCCTTCAGTGAGTTTCT
TC----CTCTTTCTTCTCAGCGATTAATTCTTTACATCACCACTCGCTCGCTCGCATGTGGTAGCTTAATTAGGAGAAAT
TAAGCTAGTTAATTAGCAATTTGCATCATCATAATGGATAGCTAGCTAGTGAGCGTACGACAAGACAGGGA--AAAAAAC
GCCTGCTTTTGGTTTTGGACACAAGTTAAATGA--------------AAGAAACACTTTATGAGGCGTTA----CCAGTA
GCCTAGAGAAAATTGTCTCAGAAAGGAGTAGGGTTTGATTGGTGCAGGCTTTTTAGGTTGAATGATTGGCGCAGAATGAC
CAGTTTGCCCTCGGGATTACGTGGAGAATCCCATGTGGTGAATCATCAGTAGCTTCTGTTCCGATCGAGCCTGCCACCAT
GTGCTAGC-TAGCTTCTGCCCACAAGTAGCAAAAATTGAC-----TTCTTGCCACATTTGCACCAGAATTAACAACCCAG
ATTTCGCTAATAATTCTGTAGTACGTATCTGACTGACTGTTTTCCTTGTTTGATTGTGCGTGCAGGCAAGCTGAGCCCCG
ACGGCGCGGCGACCCCGGCCGGCCTGATCTCGGCGGCGATAGCGCACGCCTTCGCGCTGTTCGTGGCGGTGTCCGTGGGC
GCCAACATCTCCGGCGGGCACGTGAACCCGGCCGTGACCTTCGGCGCCTTCGTGGGCGGCAACATCACCCTCTTCCGCGG
CCTGCTCTACTGGGTCGCCCAGCTCCTGGGCTCCACCGCCGCCTGCTTCCTCCTCCGCTTCTCCACCGGCGGGCTCCCCA
CCGGCACCTTCGGGCTGA---CCGGCATCGGCGCGTGGGAGGCGGTGGTGCTGGAGATCGTGATGACCTTCGGGCTGGTG
TACACGGTGTACGCCACGGCCGTGGACCCCAAGAAGGGCAGCCTGGGCACCATCGCGCCCATCGCCATCGGCTTCATCGT
GGGCGCCAACATCCTGGTCGGCGGCGCCTTCTCCGGCGCGTCCATGAACCCCGCCGTCTCCTTCGGCCCCGCCCTCGTCA
GCTGGGAGTGGGGGTACCAGTGGGTGTACTGGGTCGGCCCCCTCATCGGCGGCGGCCTCGCCGGCGTCATCTACGAGCTG
CTCTTCATCTCC---CGCACCCACGAGCAGCTCCCCACCACCGACTACTAAGCAACCAA---------------------
GCTTGCATGCGAGCTCG------------CCGTCCATCCGTGTGATGATCGATCGCGTCTCGTCATCGTCTCCTTCCTTG
CCATCGCCATGA--------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------
>chr4D_1_TraesCS4D01G308800
TAGACCGCCGGCCAAAGGGGTTCAGCGGCCAATCCCGGCGCCCCGGTTCGGCGCCGCCCGGAGGCGTCACGTCGCCCCGG
CCTCCAAACCCACACGGGCCACGAGCGCTGCCCCCCTGACAGCTCCGTGGCCGGCGCGCCTGAGCTGGCAGCGCGCGCGC
CCACCCCCCCGGCCGGTTGCTGTCCCGGTCCATCATCCATCCCACAGCAGCTCTCCTCGCGCTCTCCGCACCGCATGCAC
TGCTCGCTGCACGGCCTCGTGTTACGTGTGCACGAAAGGAGCTCACTTTAATCAGCACAGTGAGTGTTCCATCGTTCCTC
GCGCAGTTAACCTCATCAGGAAAAACATCACAAGAAAAAAATCACCGATGATGGCGAGAGCTTGTCGGCTTCTCCGTTTT
TCACCCACACAAAAGTGTCTCGTTTTGCTAGA----GTCCCAAACAAACAAACATTTTGGCACTTGCACCACATGGCACG
ATCACATGAGCCGTATGTGAAACACAAAAGAAAGAACCGGCCGAGTTTTTCCGTATATTTTC--CCTTCATTTCCGGAGA
GTCTATCTACTCTAGCAGCTATTTTATTCCACCAAGCCTTATCTCCGCCATGAATTTCATCACATCAATCAAACAAAAAA
GAAAACATTATCTTCTCTT-CCGCTCCCATCAATTTCCGAAACTACCAGTAGCACA------------------------
------CACTTTCTGCATGCAGTTACAGCCAGCTGTTTCCCAAAAATCGCACCCGAGCCCGGCGTCCAAAAGCTTCAGGC
----GTAGCAAGCACGCGATCCCAATATGGCGTTTTCCCGGGGGCCTCGCTCCACGCCGTCCATCCGTCACTGGAACCGG
CCACACCCGGTGGCCCGCGCCAGCCCAGCCCGGCGCGCGGTGTATATATACCGCCTCACTATCCCGCTCCTTCCTCACCA
A---------CTCATCTCTCTCGACTCCGGCCAGTCAGTC-------TCTTCTTCTTCTCTAGCGAGCGAGCAAGCTAGG
CTTGGAGGTGACCGAAAATGCCGGTCAGCAGGATCGCCGTGGGGAGCCACCGTGAGGTGTACGAGGTGGGCGCCCTCAAG
GCGGCGCTCGCCGAGTTCATCTCCACGCTCATCTTCGTCTTCGCCGGCCAGGGCTCCGGCATGGCCTTCAGTGAGTTTCT
TC----CTCTTTCTTCTCAGCGATTAATTCTTTACATCACCACTCGCTCGCTCGCATGTGGTAGCTTAATTAGGAGAAAT
TAAGCTAGTTAATTAGCAATTTGCATCATCATAATGGATAGCTAGCTAGTGAGCGTACGACAAGACAGGGA--AAAAAAC
GCCTGCTTTTGGTTTTGGACACAAGTTAAATGA--------------AAGAAACACTTTATGAGGCGTTA----CCAGTA
GCCTAGAGAAAATTGTCTCAGAAAGGAGTAGGGTTTGATTGGTGCAGGCTTTTTAGGTTGAATGATTGGCGCAGAATGAC
CAGTTTGCCCTCGGGATTACGTGGAGAATCCCATGTGGTGAATCATCAGTAGCTTCTGTTCCGATCGAGCCTGCCACCAT
GTGCTAGC-TAGCTTCTGCCCACAAGTAGCAAAAATTGAC-----TTCTTGCCACATTTGCACCAGAATTAACAACCCAG
ATTTCGCTAATAATTCTGTAGTACGTATCTGACTGACTGTTTTCCTTGTTTGATTGTGCGTGCAGGCAAGCTGAGCCCCG
ACGGCGCGGCGACCCCGGCCGGCCTGATCTCGGCGGCGATAGCGCACGCCTTCGCGCTGTTCGTGGCGGTGTCCGTGGGC
GCCAACATCTCCGGCGGGCACGTGAACCCGGCCGTGACCTTCGGCGCCTTCGTGGGCGGCAACATCACCCTCTTCCGCGG
CCTGCTCTACTGGGTCGCCCAGCTCCTGGGCTCCACCGCCGCCTGCTTCCTCCTCCGCTTCTCCACCGGCGGGCTCCCCA
CCGGCACCTTCGGGCTGA---CCGGCATCGGCGCGTGGGAGGCGGTGGTGCTGGAGATCGTGATGACCTTCGGGCTGGTG
TACACGGTGTACGCCACGGCCGTGGACCCCAAGAAGGGCAGCCTGGGCACCATCGCGCCCATCGCCATCGGCTTCATCGT
GGGCGCCAACATCCTGGTCGGCGGCGCCTTCTCCGGCGCGTCCATGAACCCCGCCGTCTCCTTCGGCCCCGCCCTCGTCA
GCTGGGAGTGGGGGTACCAGTGGGTGTACTGGGTCGGCCCCCTCATCGGCGGCGGCCTCGCCGGCGTCATCTACGAGCTG
CTCTTCATCTCC---CGCACCCACGAGCAGCTCCCCACCACCGACTACTAAGCAACCAA---------------------
GCTTGCATGCGAGCTCG------------CCGTCCATCCGTGTGATGATCGATCGCGTCTCGTCATCGTCTCCTTCCTTG
CCATCGCCATGAGTCGTTTTAGTTT----------------------------------------------------GCT
TTGAATGAATCCATCCATCCCTGGGTCGATCGGTCGGCCAGTAGTCGAGTCAGTTTGTGGTGCGTTCGTGCGTGGAGCTG
TAAAAGCGTGGATGATCTCGATCTGGGACGACCGACCCTGTCAATTTGCTTCTGTAAAACTGTGAATTCGCCCGCCCCGC
CCGAGTAATTTCAAGTTCAGTTGAGTTTGAACCCGTCGTGCCTTCTTGGT---------------------------AGG
AACTTGAATTCTGGAATTAATCCTGCCGTCTGTGAGATTGTCGGTGAGGTCCACTGCTGTTTAGTTTGTCTGAG------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------GCTGTTGCTCCTCGAATCGCCATGGTTCTT-CTAGCACTG
CGGAGGCACGAGCGTGCGGGGCAGTGTCAATAATGGAGTGGCATG---------------------CATGTAGCGACGAG
GGAGACGGTACGACGCCACGTCGGAGTGGTGATAAGGCCGAGCTGTTCTTGTCGGCTGGACCGG-CCGGCCGGGTCGATC
TACCCTACCCTAACCCGGCCTATCAGGTCGTGCTCGCGTGGCGGAGTGCCCGTGCCGGGTACCATACACGCATGCAGCCA
TGCATCCGGCCATCCCGGCCCATCTACTAATCATGCAGATTACGT-GGGGTTGTTGCCACGTTTACTGTCTTTTTTAGAA
AAAAATTCATTCAAATCACGAATCACTATAAAGTAGTTGCCCCTTACAAGCACACTGAAACGCAAGTCCTGTCCCAGGGA
TCCGACTGTACGAGCATATTTAGAACTCAAGTAGCACCCTAATAAACAGTCTTAAGGCCTCGCTTGGATTGCCAGATTGT
TCCTAAATACCGCGGCCAGTAAAATACACCTGTAGATTAAATTCGGGTGTATAAATTTACACCGAATCCAAGCGGGGCCT
TAAGTCTACGCATCGTTCGGTCAGTTCTGATGGCGCTTATAGTTTAATTAAGAGATTATCAAGGCATTAGATCAACAACT
GCAATCAAGAGGAACGTGGACGAAGGAGTATTATTGGAGCT
>chr4B_1
TAGACCGCCGGCCAAAGGG-TTCAGCGGCCAATCCCGGCGCCCCGGTTCGGCGCCGCCCGGAGGCGTCACGTCGCCCCGG
CCTCCAAACCCACACGGGCCACGAGCCCTGCCCCCCTGACAGCTCCGTGGCCGGCGGGCCTGAGCTGGCAGCTTGCGCGC
CCACCG-CCCGGCCGGTTGCTGTCCCGATCCATCATCCATCCCACATTAGCCCTCCTCGCGCTCTCCGCACCGCATGCAC
TGTTCGCTGCACGGCCTCGTGTTACGTATGCTCGAAAGGAGCTCACTTTAATCAGCACAGTGGGTGTTCCATCGATCCCC
GCACAGTTAGCCTCACCAGGAAAAATGTCACGCAG--AAAATCACCGATGATGGCGAGAGCTTGTCGACTTCTCCGTTTT
TCACCTGCAC-AAAGTGTCTCGTTTTGCTCACTAGGGTCCCAAACAAACAAACATTT-GGCACTTGCACCGCATGACACG
ATCACACGAGCCGTGCGAGG--CACAAAGGAAAGAACCGGCCGAGTTTTTCCGTATGTTTTCTCCCCTCATTTCCGGAGA
GACTATCTACTCCAGTAGCTATTTTATTCTACCAAGCCTTATCTCCGCCATGAATTTCATCACATCAATCAAACAAAAAA
GAAAACATTATCTTCTCTTTCC-CTCCCATCAATTTTCGAAGCCACCAG---CACA------------------------
------CACTGTCGGCATGCAGTTACAGCCAGCTGTTTCCCAAAAATCGCACCTGAGCCCGGCGTCCAGAAGCTTCAGGC
----GTAGCGAGCACGCGATCCCAATATGGCGTTTCCCCGGGGGCCTCACTCCACACCGTCCATTCGTCACTGGAACCGG
CCACACCCGGTGGCCCGCGCCAGCCCGGCCCGGCGCGCCGTGTATATATACCGCCTCACTGTCCCGCTCCTTCCTCACCA
ACTCACCTCTCTCATCTCTCTCGACTCCGGCCAGTC--------------TCTTCTTCTCTAGAA----AGCTAGCGAGG
CTTGGAGGTGAGCGAAAATGCCGGTCAGCAGGATCGCCGTGGGGAGCCACCGTGAGGTGTACGAGGTCGGCGCCCTCAAG
GCGGCGCTCGCCGAGTTCATCTCCACGCTCATCTTCGTCTTCGCCGGCCAGGGCTCCGGCATGGCCTTCAGTGAGTTTCT
TC----TTCTTTCTTCTCGTCGTTTAATTCTTTCCATCACCACTCGCTTGCTCGCATGCGGTAGCTTAATTAGGAGAAAT
TAACTTTGTTAATTGGTAATTTGCATCATCATA----ATAGGTAGCTAGTGCACGTACGACAAAGGGATTGAGAAAAACC
GCCTGCTTTTGGTTTTGGAGACAAGTTAAGTGAC-----AAGAAAGAAAGAAACACTTTATGAGGCGTTA----CCAGTA
GCCTAGAGAAATCTGTCTCAGAAAGGAGTAGGGTTTGATTGCTATAGGCTTTTTAGGTTGAATGATTGGCGCAGAATGAC
CAGTCTGCCCTTGGGGTTACGTGGAGAATCCCATGTGGTGATGAACCAGTAGCTTCTGTTCCTATCGAGCCTGCCACCAT
GT----GC-TAGCTTCTGCCCACAAGTAGCAAAAATTGATCCA-----TTTCCACATTTGCACCAGTG------------
-----------------------CGTATCTGACTGACTGTTTTCCTTGTTTGATTGTGCGTGCAGGCAAGCTGAGCCCCG
ACGGCGCGGCGACCCCCGCCGGCCTGATCTCGGCGGCGATAGCGCACGCCTTCGCCCTGTTCGTGGCGGTGTCCGTGGGC
GCCAACATCTCCGGCGGGCACGTGAACCCGGCCGTGACCTTCGGCGCCTTCGTGGGCGGCAACATCACCCTCTTCCGCGG
CCTGCTCTACTGGATCGCCCAGCTCCTGGGCTCCACCGCCGCCTGCTTCCTCCTCCGCTTCTCCACCGGCGGGCTCCCCA
CCGGCACCTTCGGGCTGA---CCGGCATCGGCGCGTGGGAGGCGGTGGTGCTGGAGATCGTCATGACCTTCGGGCTGGTG
TACACGGTGTACGCCACCGCCGTGGACCCCAAGAAGGGCAGCCTGGGCACCATCGCGCCCATCGCCATCGGCTTCATCGT
GGGCGCCAACATCCTGGTCGGCGGCGCCTTCTCCGGCGCGTCCATGAACCCCGCCGTCTCCTTCGGCCCCGCCCTCGTCA
GCTGGGAGTGGGGGTACCAGTGGGTGTACTGGGTCGGCCCCCTCATCGGCGGCGGCCTCGCCGGCGTCATCTACGAGCTG
CTCTTCATCTCC---CGCACCCACGAGCAGCTCCCCACCACCGACTACTAAGCAGCGAGCTTAGGATCGGAG--------
--------------TCG------------CCGTCCATCCGTCCGTGTGATGCT------------TCGTCTCCCCCTTCC
TTCCCGTCATCAGTCGTTTTAGTTTCTCGCGCGGTCGCCGCATGCCATGATGCATGTATGCGGAGCTCGCCTCGTTTGCT
TTGAATCAATCAGTCCTGGGATCCGTCGATCGGTCGGTC---AGTCGAGTCAGTTTGTGGTGCG----TGCGTGGAGCTG
TAAAAGCGTGGATGATCTCGATCTGGGATGACCGACCCAGTCAATTTGCTTCTGTAAAACTGTGAATTCG-----CCCGC
CCGAGTAATTTCAAGTTCAGTTGAGTTGGAATGGATCGACCGTGCCTTGTGAAATGTGAATTTGCCAATTTGGTTGCAGG
AACTTGAATTCTGGAATTAATCCGGCCGTATGTGAGACTGTCAGTGAGGTCCACTACTGTTTAGTTTGTCTGA-------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------AGCTGTTGCTCCTCGAATCGCCATGGTTCTAGCTAGCACTG
CGGGGGCACGAGCGTGCGGGTCAGTGTCAATAATGGAGTGGCATGGCATGGCAGGGCAAGGGCAAGCATGTGGCGACGAG
GGAGACGGTACGACGCCACGTCGGAGTGGTGATAAGGCTGAGCTGTTGTTGTCGGCTGGACCGG-CCGGCCGGGTCGATC
TACCCTACCCTAACCCGGCCTATCAGGTCGTGCTCGCGCGGCGGAGTGCCCGTGCCGGGTACCATACACGCATGCGGCCA
TGCATCCGGCCATCCCGGCCCTTCTACTAATCATGCGCATTACGT-GGGGTTGTTGGCACATTTACTGTC----------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------
>chr4A_1
TAGACCGCCGGCCAAATGCC--CAGCAGCCAATCCCGGCGCCCCGGTTCGGCGCCGCCCGGGGATGTCACGTCGCCCCGG
CCTCCAAACACACACAAACCACAAGGCCTG-CCCCCTGACAGCTCCGTGGCCGGCGCGCCTGAGCTGGCAGCGCGCGCGC
CCACCC-GCCGGCCGGTTGCCGTCCCGATCCATCTTCCATCCCAGAGCA----------------------------CAC
TGTTCGCTGCACGGCCTCGTGTTACGTGTGCACCAAAGGAGCTCACTTTAATTACCACAGTGTTCAA--------TCGTC
GCGAAGTTAACC---TCAGGAAAAATATCACAAGGA-AAAATCACCGATGATGGCGAGAGCTTGTCGGCTTCTCCGTTTT
TCACCTACAC-AGAGTATCTCGTTTTGCTCACCTAG-----------ACAAACATTTTGGCACCTGTACAGCGCAG----
-------------------------------AAGAAGTGACCGAGTTTTTCATCTCATTTCC--CATTCTTTATTCTATA
CCAAGCCTCAT--------------------------CTTATCTCTCCCATGAATTACGTCTTCT--------CAGAAGA
GAAAACATTATCTTGTCTT-CC-CTCCCATCAATTTCCGAAACTATCAG---TACATCCACCCATGAATGATGACACGTA
CGCACGCACATTCGGCATGCAGTTACATCCAGCTGTTTCCCAGAAATCGCACCTGAGCCCGGCCTCCAGAAGCTTCAGGC
AGGCGTAGCAAGCACGCGAGCCCAATATGGCGTTTTCCCGGGGGCCTCACGCCACACCGTCCGTTCGTCGCTGGAACCGG
CCACGCCCGGTG----------GCCCGGCCCGGCGCGCGGTGTATATATACCGCCTCCCTATCCCGCTCCTTCCTCACCA
ACCCGCCTCCCTCATCTCTCTCCACTCCGGCCGGCCAGCCAGTCTCTTCTTCTTCTTCTCCAGCGAGCGAGCGAGCTAGG
CTCGGAGGTGAGCGAAAATGCCGGTCAGCAGGATCGCCGTGGGGAGCCACCGTGAGGTGTACGAGGTGGGCGCCCTCAAG
GCGGCGCTCGCCGAGTTCATCTCCACGCTCATCTTCGTCTTCGCCGGCCAGGGCTCCGGCATGGCCTTCAGTGAGTTCCT
TCTTCCTTCCTTCTTCTCATCGGTTAATTCTTTCCATCACCATAAT---------------TAGCTTAATTATGAGAAAT
CAAGCTAGTTAATTAGCAGTTTGCACCATCATAATGGATAGCTAGCTAGTGCACCTACGACAAGACAGGGC--AAAAACC
GCTTGCTTTTGGTGTTGGACACAAGTTAAAATGACAAGAAAGAAAGGAAGAAACGCTTTATGAGGCGTTAGTTACCAGTA
GCCTAGAGAAATCTGTCTCAGAGAGGAGTAGGGTTTGATTGCTACAGGCTTTTTAGGTTGAATGATTGGAGCAGAATGAC
TACTTTGCCCCTGGGATTACGTGGAGAATCCCATGTGGTGAAT---CAGTAGCTTCTGCTCCTATCGAGCCTGCCATTCC
CCATGTGCTTAGCTTCTGCCCACAAGTAGCAAAAAATGATGGGATTTCTTGCCACATTTGCACCAGTG------------
-----------------------CGAATCCGACTGACAGTTTTCCATGTTTGATTGTGGCTGCAGGCAAGCTGAGCCCCG
ACGGCGCGGCGACCCCCGCCGGCCTCATCTCGGCGGCGATAGCCCACGCCTTCGCGCTGTTCGTGGCGGTGTCCGTGGGC
GCCAACATCTCCGGCGGGCACGTGAACCCGGCCGTGACCTTCGGCGCCTTCGTGGGCGGCAACATCACCCTCTTCCGCGG
CCTGCTCTACTGGATCGCGCAGCTGCTGGGCTCCACCGCCGCCTGCTTCCTCCTCCGCTTCTCCACCGGCGGGCTCCCCA
CCGGCACCTTCGGGCTGAGT---GGCATCGGCGCGTGGGAGGCGGTGGTGCTGGAGATCGTGATGACCTTCGGGCTGGTG
TACACGGTGTACGCCACGGCCGTGGACCCCAAGAAGGGCAGCCTGGGCACCATCGCGCCCATCGCCATCGGCTTCATCGT
GGGCGCCAACATCCTGGTGGGCGGCGCCTTCTCCGGCGCGTCCATGAACCCCGCCGTCTCCTTCGGCCCCGCCCTCGTCA
GCTGGGAGTGGGGGTACCAGTGGGTGTACTGGGTCGGCCCCCTCATCGGCGGCGGCCTCGCCGGCGTCATCTACGAGCTG
CTCTTCATCTCC---CGCACCCACGAGCAGCTCCCCACCACCGACTACTGAGCAGCGAGCTCAGCGCAGCCAGCCTGCTT
GCTTGCGTGCAAGCCCGCCGCCTGCCTGCCCGTCCGTCCGTGTGATCTATGATCGCG--------TCGTCTCCTTCCTTG
CCATCACCATGAGTCGTTTAAGTTT----------------------------------------------------GCT
T------------------CCTGGGTCGA--------------------TCAGTTTGTGGTGAG----TTCGTGGAGCTG
TAAAACCGTGGA--------------------CGACACTGTCAATTTGCTTCTGTAAAACTGTGAATTCGCCCGTCCCGC
CCGAGTAATTTCAAGTTGAGTTGAGTTCGACCGTGCCTCTGAA-------------------------------------
AACTTGAATTCTGGAATTAATCCGTCCGTC--TGAGATTGCCAGTGAGGTCCACTACTGTTTAGTTTGTTTGAGGCAGGT
CATAATGGGCAAGAACATAGTCTAGTAACTTACACACCACTTTTCTAGACTATGTTACTATCTCCACAGTAGATAGGAAC
ATGCAACAATGTATTTATTAGGTTATAGACTCATTGTTTCTTAAAGTGTGTGATGTTCTGATAACTTAGCTAGTTACCAC
AAACACTTCTTTTTTTATTAAATATGTGACACATAAGCAAAGTTGTATACTTTATTAAATATGTGATACATAAGCAAAGT
TGTATTGGAGTGTATAATGTTACTCTTAAGTTCCTCCCCAGCTGTTGCTCCTCGAATCGCCATGG---------------
-GGAGGCACGAGCGTG-GGGTCAGTGTCAATAATGGAGTGGCATGGCAC----------------GCATGTGGCGACGAG
GGAGACGGTACGGCGCCACGTCGGAGTGGTGATAAGGCTGAGCTGTTGTTGTCGGCTGGACCGGGCCGGCCGAGTCGATC
TACCCTGCCCTAGCTAACCCTATCAGGTCGTGCTCGCACGTAC---------------GTACCACACACGCATGCGGCCA
TGCATCCGGCCATCCCGGCCCATCTACTAATCATGCGCACTTCGTGGGGGTTGTTGGCACGTTTACTG------------
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>chr3B_1647
TTGTGCCTGG----------------------------------------------------------------------
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--------------------------------------------------------------CAGGCAAGCTGACTGACG
GCGGCGCGACGACGCCGGCGGGGCTGATCGCGGCGGCGCTGGCGCACGCGTTCGCGCTCTTCGTGGCCGTGTCCGTGGGC
GCCAACATCTCGGGCGGGCACGTGAACCCGGCCGTCACATTCGGCGCCTTCGTGGGCGGCAACATCAGCCTGCTCAAGGC
GGTGGTGTACTGGGTGGCGCAGCTGCTCGGCTCCGTCGTGGCCTGCCTCCTCCTCAAGATCGCCACCGGCGGCGAGGCCG
TGGGCGCCTTCTCGCTCTCCGCCGGCGTCGGCGTCTGGAACGCCGTGGTCTTCGAGATCGTCATGACCTTCGGGCTCGTC
TACACGGTGTACGCCACGGCGGTCGACCCCAAGCGCGGCGACCTCGGGGTCATCGCGCCCATCGCCATCGGCTTCATCGT
CGGCGCCAACATCCTCGCCGGCGGCGCCTTCGACGGCGCCTCCATGAACCCCGCCGTCTCCTTCGGCCCCGCTGTCGTCA
CCGGCGTCTGGGAGAACCACTGGGTGTACTGGCTCGGCCCCTTCGCCGGCGCCGCCATCGCCGCCCTCGTCTACGACATC
TGCTTCATCGGCCAGCGGCCCCACGAGCAGCTCCCCACCGCCGACTACT-------------------------------
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-----------------------------------------
>chr3A_1651
GCG----TGG----------------------------------------------------------------------
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--------------------------------------------------------------CAGGCAAGCTGACTGACG
GCGGCGCGACGACGCCGGCGGGGCTTATCGCGGCGGCGCTGGCGCACGCGTTCGCGCTCTTCGTGGCCGTCTCCGTGGGC
GCCAACATCTCCGGCGGGCACGTGAACCCGGCCGTCACATTCGGCGCCTTCGTGGGCGGCAACATCAGCCTGCTCAAGGC
CGTGGTGTACTGGGTGGCGCAGCTGCTCGGCTCCGTCGTGGCCTGCCTCCTCCTCAAGATCGCCACCGGCGGCGAGGCCG
TGGGCGCCTTCTCGCTCTCCGCCGGCGTCGGCGTCTGGAACGCCGTGGTGTTCGAGATCGTCATGACCTTCGGGCTCGTC
TACACGGTGTACGCCACCGCGGTCGACCCCAAGCGCGGCGACCTCGGGGTGATCGCGCCCATCGCCATCGGCTTCATCGT
CGGCGCCAACATCCTCGCCGGCGGCGCCTTCGACGGCGCCTCCATGAACCCCGCCGTCTCCTTCGGCCCCGCTGTCGTCA
GCGGCGTCTGGGAGAACCACTGGGTCTACTGGCTCGGCCCCTTCGCCGGCGCCGCCATCGCCGCCCTCGTCTACGACATC
TGCTTCATCGGCCAGCGCCCCCACGAGCAGCTCCCCACCGCCGACTACT-------------------------------
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>chr3D_1655
--------------------------------------------------------------------------------
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-------------------------------------------------------------GCAGGCAAGCTGACTGACG
GCGGTGCGACGACGCCGGCGGGGCTGATCGCGGCGGCGCTGGCGCACGCGTTCGCGCTCTTCGTGGCCGTCTCCGTGGGC
GCCAACATCTCGGGCGGCCACGTGAACCCGGCCGTCACATTCGGCGCCTTCGTGGGCGGCAACATCAGCCTCCTCAAGGC
GGTGGTGTACTGGGTGGCGCAGCTGCTCGGCTCCGTCGTGGCCTGCCTCCTCCTCAAGATCGCCACCGGCGGCGAGGCCG
TGGGCGCCTTCTCGCTCTCCGCCGGCGTCGGCGTCTGGAACGCCGTGGTCTTCGAGATCGTCATGACCTTCGGCCTCGTC
TACACCGTCTACGCCACCGCCGTCGACCCCAAGCGCGGCGACCTCGGGGTCATCGCGCCCATCGCCATCGGCTTCATCGT
CGGCGCCAACATCCTCGCCGGCGGCGCCTTCGACGGCGCCTCCATGAACCCCGCCGTCTCCTTCGGCCCCGCCGTGGTCA
GCGGCGTCTGGGAGAACCACTGGGTGTACTGGCTCGGCCCCTTCGCCGGCGCCGCCATCGCCGCCCTCGTCTACGACATC
TGCTTCATCGGCCAGCGCCCACACGAGCAGCTCCCCACCGCCGACTACT-------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------
>SNPs
-------------------S------------------------------------------------------------
--------------------------S-----------------------------------------------------
------S--------------------S-----------------------S----------------------------
--S-----------------------------------------------------------S-----------S-----
-------------------------S--------S-S-------------------------------------------
-----S----S------------------SSS--------------------------------------S---------
------S-------SS-S-SSS------S---------------------------------------------------
-S----------S--S-------------S--------------------------------------------------
----------------------S--------------------------SSS----------------------------
-------------S---------------------------------------S--------------S-----------
------------------------------------------------S------S--------S---------------
--------------------------S-----------------------------------------------------
--------------------------------------S---------------------------------S-------
-----------S--------------------------------------------------------------------
--------------------------------------------------------------------------------
------S------------S--S----------S--------------S---------S---------------------
---------------------------------------------------SS-----------------S-------S-
--------------------------------------------------------------------------------
-----------SS----------------------------S-S------------------------------------
-----------S-------------------------------S-S----------------S-----------------
--SSSS---------------------------------S--------------------------SSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------S-S-S---------------------
------S---S-----------------------------------SSSS-------SSSSSSSS---------------
--------------------------------------------------------------------------------
------S----SS---SSS------------------S-SSS----------------------SSSS------------
----------------------------S---------------------------------------------S-----
---------------------------S----SS----SS-S-S-S-S--------------------------------
-----------------------S------------------S------------S------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------S----------
--------------------S--------------------------------------------------S--------
--------------------------------------S--------S--------------------------------
--------------------------------------S------------------------------------S----
------------------------------------SS------------------S-------------SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_487
--------------------------------------------------------------------------------
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-------------------------------------------------------------------ACCACATGGCACG
ATCACAT-------------------------------------------------------------------------
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>reverse_1606
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-----AGCTAGCTTCTGCCCACAAG-------------------------------------------------------
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-----------------------------------------
>forward_495
--------------------------------------------------------------------------------
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---------------------------------------------------------------------------GCACG
ATCACATGAGCCGTA-----------------------------------------------------------------
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-----------------------------------------
>reverse_2628
--------------------------------------------------------------------------------
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-------------------------------------------------------------------GTGCGTGGAGCTG
TAAAAGC-------------------------------------------------------------------------
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-----------------------------------------
