>input_sequence_53381
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-------------------------------------CGCCGCGCGCACGTGCGTCGCTCTCCTCCTCGGCTCCGGCCAA
CAGGCGCCGCCGTCCAACGCATGTAACTGTGCCTAGCTGTCTTCTCTTCTCATGGACCAGCAGGGGGCGGCGCCGTCCAG
CAGCACCAGCACCAGCACCAACAGCAGCCGCAGCACGTCGGACCATCCCCACCACGCGTCGGCCGCCGCGCACCACCACC
CCTTCTACTACGCTGCCGCGGCGGCTACAGGCGCCACGCCGCCGCCGCCGTTCATGGGCTCGCTCGCGATGGTGCCCGCG
GCTACCCCGGCGGGAGGGCAGACGGCCAACCACAGCCAGTCGATAACGGTGGCCGAGCCGCCGTCAGAGAAGAAGGTGGC
AAAGCGGCCGACCAAGGACCGGCACACCAAGGTGGATGGGCGCGGGCGGAGGATACGGATGCCGGCGCTGTGCGCGGCGC
GGGTGTTCCAGCTCACGCGGGAGCTCGGCCACAAGACCGACGGCGAGACCGTCGAGTGGCTTCTGCAGCAGGCCGAGCCC
GCTATCGTCGCCGCCACCGGCACCGGCACCGTCCCCGCCAACTTCTCCACCCTCGCCGCCTCCCTGCGCCCCGGCGCCTC
CTCCCGTGTCGCGCCCTTCCAGCACCACCTTCAGCACCAGCCGCAGCACGACGTGGCTGCCATGCTCGGGTTCCATGGCC
ACCATCAGCACCAGCTGCTCCCCCCGCCGCCGCAGCAGCAGCACCACCACCAGCACCCGGAGGCGCCGCAAGATCCTGGC
GCCGGGGAGTTCATGAGGAAGCGGTATAGGGAGGCGGACGACCTGTTCAAGGACACCGGACGCCATCAAGACCCGGAGGA
CGGCGGCGAGCCCGCGCAGAAGTCCAGGCCGGCGCCGCCACCCACTGCTGTTTCGGGGGCAATGTGGGCCGTGGCGCCGA
ACAGCGGCGCAGGCGGCGGCGGC---GCCTTCTGGATGCAGCCGGCATGGGCCTTCGGCGCCGGGAACACGGTGCAGGCG
CCGCTGCAGTTCATTTCAAGAAGCAGCTTTCCCGGCGGGATGGGCGACACGAATCTCGGCATGCTCGCGGGCCTCAACTC
CTGCGGCCGCTCCACCGGCGGCGAGCAG---------CAGCACCAGCAGCAGCCGCAGCAGGAGGAGGAGGAAGGGCAGC
CTCCCGAGATGGATCAGCACCGCCGGGGCAGCACCAGCGCCGGCGCGAACGGCCATGACGCCGGCCATTCCGCCGCAAGC
CCGCAGTAAGCAAGCAACGAGAGCCATCCGTTCGAGCAACCAATCATTCAAGCATCTGGCATGGTGATCAGGGAGAGTGT
GTGGAGCATTTTAGCTAGTTGCTGCTGCACTAGTTA------CAAATCAACCAATTGTTTAGTT----------------
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-----
>chr4B_1_TraesCS4B01G093700
ACGTATTACATAAAAGTTAACAGGACAACATATGTGATTACTTCGTACGTGTTATATAAGTAATAAGTCACACATTCAAG
AAACCGTATACTTGGTGTTTCAAGCAAGGTTGTAGGACGTACTTGCAAAAGA---------GAATGATAACAACTTCTCC
CGATGTCATGACTTGACTGGGGTTTGATTCATGAAGGGATGGGATTGCACCCACCACCGGCCATCCAATCAACTTTTAGT
TCAATAACA-TAAACATTTGACATTCCCTAAAAAACTGAGAAAATGGGTAGCACATGGTGAAACAAATAGATTGTAAGGT
TTAAATAGTACTCATATG----------------------------GTGTCATAATAAAATAAGGGAAAATGAAGGCG--
----------------------------GTCCAAATTGCCATGCGAAAAACATATAA---AATTGACATGTT---TGTAA
TGGATTCGCCATGCTCTGAAGTGAAATTTGCCATCTTGTA-AAAAAGAATGGCAGACAAATTACCACGCCGAAGAGAGAA
ATTGCCATGCGTTTGATCG-TGATCTGATGGCTCCGAGGAAATTCGCTGGGAACCCCTAGAAATCTGGTGTTCACACGTT
ATTGAAATCCAAAAATAAATA-TACATGCTAACAAACAGCTGTATTTCCATTTCCAAATCTTAATTGGATTCACAAATCC
CAAGCTCGTGATTACCACAAATCCAAATTTGGCAATGTTTAACCCCAATTAGCTGGCCAATTGATTGGCCAGGTCATGAT
CCTCACGCAGCAGCTAGCTGATACACACCACGCGGTGCAAACTTGCCCTACCCAACGCGAACCATGGTTGTGGTTATGGT
TATATAAGAGAGGAAAGCTAGGCAGGCTACGGAGGAGTAGGTCCCAACAATGGTGGTTTTCTGGGGTTTAGGACGGTCAT
ACTCAAAATCCAAACCTACCAACCCCACACCTCTCCCTCTCTTCCACCTCTGAGTCTGACCTCTCTCTCCTCCAGCCGCT
ATCCCAGCCCCACACCTCCTCCCACACCCCACCCCACCGCCGCGCGCACGTGCGTCGCTCTCCTCCTCGGCTCCGGCCAA
CAGGCGCCGCCGTCCAACGCATGTAACTGTGCCTAGCTGTCTTCTCTTCTCATGGACCAGCAGGGGGCGGCGCCGTCCAG
CAGCACCAGCACCAGCACCAACAGCAGCCGCAGCACGTCGGACCATCCCCACCACGCGTCGGCCGCCGCGCACCACCACC
CCTTCTACTACGCTGCCGCGGCGGCTACAGGCGCCACGCCGCCGCCGCCGTTCATGGGCTCGCTCGCGATGGTGCCCGCG
GCTACCCCGGCGGGAGGGCAGACGGCCAACCACAGCCAGTCGATAACGGTGGCCGAGCCGCCGTCAGAGAAGAAGGTGGC
AAAGCGGCCGACCAAGGACCGGCACACCAAGGTGGATGGGCGCGGGCGGAGGATACGGATGCCGGCGCTGTGCGCGGCGC
GGGTGTTCCAGCTCACGCGGGAGCTCGGCCACAAGACCGACGGCGAGACCGTCGAGTGGCTTCTGCAGCAGGCCGAGCCC
GCTATCGTCGCCGCCACCGGCACCGGCACCGTCCCCGCCAACTTCTCCACCCTCGCCGCCTCCCTGCGCCCCGGCGCCTC
CTCCCGTGTCGCGCCCTTCCAGCACCACCTTCAGCACCAGCCGCAGCACGACGTGGCTGCCATGCTCGGGTTCCATGGCC
ACCATCAGCACCAGCTGCTCCCCCCGCCGCCGCAGCAGCAGCACCACCACCAGCACCCGGAGGCGCCGCAAGATCCTGGC
GCCGGGGAGTTCATGAGGAAGCGGTATAGGGAGGCGGACGACCTGTTCAAGGACACCGGACGCCATCAAGACCCGGAGGA
CGGCGGCGAGCCCGCGCAGAAGTCCAGGCCGGCGCCGCCACCCACTGCTGTTTCGGGGGCAATGTGGGCCGTGGCGCCGA
ACAGCGGCGCAGGCGGCGGCGGC---GCCTTCTGGATGCAGCCGGCATGGGCCTTCGGCGCCGGGAACACGGTGCAGGCG
CCGCTGCAGTTCATTTCAAGAAGCAGCTTTCCCGGCGGGATGGGCGACACGAATCTCGGCATGCTCGCGGGCCTCAACTC
CTGCGGCCGCTCCACCGGCGGCGAGCAG---------CAGCACCAGCAGCAGCCGCAGCAGGAGGAGGAGGAAGGGCAGC
CTCCCGAGATGGATCAGCACCGCCGGGGCAGCACCAGCGCCGGCGCGAACGGCCATGACGCCGGCCATTCCGCCGCAAGC
CCGCAGTAAGCAAGCAACGAGAGCCATCCGTTCGAGCAACCAATCATTCAAGCATCTGGCATGGTGATCAGGGAGAGTGT
GTGGAGCATTTTAGCTAGTTGCTGCTGCACTAGTTA------CAAATCAACCAATTGTTTAGTTTGTTCTTTTCTATTGG
GATTATTTTAGTTTGCCGTTCATTAATCCATGGTTTGTGCTGATGGAGGTGATGATTAGCAGTGGGTCCAATTGAACCAG
GCACTATTTGTTTAAGGCAACAAGGCTGAGTTTTGCACATTTTATCGTATCAGTTTTCTATTATTGCTATATATCATGGG
GAATCTATTTGTTCGATGGAAGTAATCCATGTTTAGAACAAGGTGATTTTCCATAGAATTCTTGCTAGGGCAAGAAATGC
TTGGAAGACGCAGCACTTTAAC-----TAGCTAATTGCCATGCGTTGCAACACGGGCATACCTATTCTAGTGATTCAACA
TCAATTTTGCCC------------------------------GACATATATACACCTACCATATCCTAAATTTTGGTAAG
ATTTAATTTTATTTAGGTATAGGTAGGGAAATTCAAGGAATTTTTTAATTTAATTAAGGTTTGGTAAGATTTAATTTGAT
TTAGGTATCACTAGTAGAAAAACGACTTTTAGTACCGGTTCAT------------AAGAGTGGGGACTAAAGATCCCCC-
-TTTAATACCGGTTCAACACGAACCGGGACCAAAGGCCCACCACGTGGCAAGAGGCGCGCCGTGGTCTGGGGGACCTTTA
GTCCCGGTTGGTAAGGATTTTTTTTATTTTTATTTTTGAAATAAAGCAAAAACAGCCTGCCTACTGGGCCGGCACGGCCT
GCATACGACTAGAAACCCAATCTCTAGTTGGGCCAGGATGCAGGCCCGTACGGTCCAGTAGGCCCCACAGGGCAGAAGAC
TTGCAATAGGCCCACAAAGGCCTGCTTAGAGAGGAGCTCGACACGGTAGCCGCGGCGGGGCTTATAAACCGGTGCGAGCT
CCTCTCAACTAGCGAGGTGGGACTAAACATTGTGCACTACGGGTGGCTCCAACCGGTACTAAAGGCCACCACCTCTTTAA
TACCGGTTCGTGGCACGAACCGGTACTAAAG-------------------------------------------------
-------------------------------------------GTTCACCACGAACCGGTACTAATAAGCGCCGCCCGCC
TGGCC
>chr4D_84
CCGTATTAA-----------------------------------------------------------------------
-----------TTGGTGTTTCAAGCAAGGTTGTAGGACGTACTTGCAATAAAATTCTATAGGAATGGTAACAACTTCTCC
GAATGTCATGTGC--------GTTTGATCCATGAAGGGATGTGATTGCAACCACCACCGGCCATCCAATCAACGATTAGT
TCGATAACACTAAACATTTGACGTTCTCTAAGAAATTGAGAAAAGGGGTAACACATGGTGATACAAGTAGATTATAAGGT
TTAAACATTGCCCCTATAAACAATAATAGGATGAACAACATGGTACGTGTCATAATAAAATAAGGGAAATTGATGGTCTA
CGTCTCAGGTAAGGGTTTTTCAGCGAATGTCTAAGTTGCCATGCGAAAA--ATATAA---AATTGACATGTTGTTTGTAA
TGGATTTGCAATGCTCCGAAGTGAAATTTGCCATCTTGTGCAAAAAAAATGGCAGACAAACTACCACGCCATGGAGAGAA
ATTGTCATGCGTTCGTATCATGATTCGATGGCTCCGAGGAAATTCGCTGGGGGGCCCTAGAAATCTGGCGTTCACACGTC
ATTAAGATCCTAAAATAAATAGTACATGCTAACAAACAGCTGTATTTCCATTTCAAAATCTTAATTGGATTCACGAATCC
CAACCTCATGATTACCACAAATCCAAATTTGGCAATGTTTAACCCCAATTAGCTGGCCAATTGATTGGCCAGGTCATGAC
CCTCACCCAGTAGCTAGCTGATACACACCACGCGGTGCAAACTTGCCCTACCCAACGCAAACCATGGTTG--GTTATGGT
TATATAAGAGAGGAAAGCTAGGTAGGCTACGGAGGAGTAGGTCCCAACAATGGTGGTTTTCTGGGGTTTAGGATGGTCAT
ACTCAAAATCCAAACCTACCAACCCCACACCTCTCCCTCTCTTCCACCTCTGAGTCTGACCTCTCTCTCCTCCCGCCGCT
ATCCCAGCCCCACACCTCCTCCCACACCCCACCCCACCGCCGCGCGCACGTGCGTCGCTCTCCTCCTCGGCTCCGGCCAA
CAGGCGCCGCCGTCCGACGCATGTGACTGTGCCTAGCTGTCTTCCCTTCTCATGGACCAGCAGGGGGCGGCGCCGTCCAG
CAGCACCAGCACCAGCACCAACAGCAGCCGCAGCACGTCGGACCACCCCCACCACGCGTCGGCCGCCGCGCACCACCACC
CCTTCTACTACGCTGCCCCGGCGGCTACAGGCGCCACGCCGCCGCCGCCGTTCATGGGCTCGCTTGCGATGGTGCCCGCG
GCTACCCCGGCGGGAGCGCAGACGGCCAACCACAGCCAGTCGATAACGGTGGCCGAGCCGCCGTCAGAGAAGAAGGTGGC
GAAGCGGCCGACCAAGGACCGGCACACCAAGGTGGATGGGCGCGGGCGGAGGATACGGATGCCGGCGCTGTGCGCGGCGC
GGGTGTTCCAGCTCACGCGGGAGCTCGGCCACAAGACCGACGGCGAGACCGTCGAGTGGCTTCTGCAGCAGGCCGAGCCC
GCTATCGTCGCCGCCACCGGCACCGGCACCGTCCCCGCCAACTTCTCCACCCTCGCCGCCTCCCTCCGCCCCGGCGCCTC
CTCCCGTGCCGCGCCCTTCCAGCACCACCTCCAGCACCAGCCGCAGCACGACGTGGCTGCCATGCTCGGGTTCCATGGCC
ACCATCAGCACCAGCTGCTCCCCCCGCCGCCGCAGCAGCAGCACCACCACCAGCACCCGGAGGCACCGCAAGATCCTGGC
GCCGGGGAGTTCATGAGGAAGCGGTATAGGGAGGCGGACGACCTGTTCAAGGACACCGGACGCCATCAAGACCCGGAAGG
CGGCGGCGAGCCCGCGCAGAAGCCCAGGCCGGCGCCGCCACCCACTGCTGTTTCGGGTGCAATGTGGGCCGTGGCGCCGA
ACAGCGGCGCAGGCGGCGGCGGCGGCGCCTTCTGGATGCAGCCGGCATGGGCCTTCGGCGCCGGGAACACGGTGCAGGCG
CCGCTGCAGTTCATTTCAAGAAGCAGCTTCCCCGGCGGGATGGGCGACACGAATCTCGGCATGCTGGCGGGCCTCAACTC
CTGCGGCCGCTCCACCGGCGGCGAGCAGCAGCAGCACCAGCACCAGCAGCAGCCGCAGCAGGAGGAGGAGGAAGGGCAGC
CTCCCGAGATGGATCAGCACCGCCGGGGCAGCAACAGCGCCGGCGCGAACGGCCACGAGGCCGGCCACTCCGCCGCAAGC
CCGCAGTAAGCAAGCAACGAGAGCCATCCGTTCGGGCAACCAATCATGCAAGCATCTGGCATGGTGATCAGGGAGAGTGT
GTGGAGCATTTTAGCTAGTTGCTGCTGCACTAGTTAATTAATCAAATCAACCAATTGTTTAGTTTGTTCTTTTCTATTGG
GATTATTTTAGTTTGGCGTTCATTAATCCATGGTTTGTGCTGATGGAGGTGATGATTAGCAGTGGGTCCAATTGAACCAG
GCACTATTTGTTTAAGGCAACAAGGCTGAGTTTTGCACATTTTATCGTATCAGTTTTCTATCATTGCTATATATCATGGG
GAATCTATTTGTTCGATGGAAGTAATCCATGTTTAGAACAAGGCGATTTTCTATAGAATTCTTGCTAGGGCAAGAAATGC
TTGGAAGACGCAGCACTTTAACAGAACTAGCTAATTGTCATGCGTTGCAGCAGGGGCATACATATTCTAGTGATTCAACA
TCAACTTTGCCC------------------------------GACATATATACACCTACCATATTTTAGATTTTGGTAAG
ATTTAATTTTATTTAAGTATAGATAGGGAAAGGCAAGGAAATTTTTGATTTAATTAAGGTTTGGAAAGATTTAATTTGAT
TTAGGTAT------------------------------------------------------------------------
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>chr4A_361
--------------------------------------------------------------------------------
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----------------------------GTCTAAGTTGCCATGCAAAAA--ATATAGTATAATTGACATGTTGTTTGTAA
TGGATTTGCAATGCTCTGAAGTGAAATTTGCCATCTTGTGCAAAG-AAATGGCAGACGAATTACCACGCCATTGTGAGAA
ATTGCA-----TTCGATGG-TGATCCGATGGCTCTGAGGAAATTCGTTGGGAACCCCTAGAAATGTGGCGTTCACACGTT
ATTAAAATCCTACAATGAATA-TACATGCTAACAAACAGCTGTATTTCCATTTCAAAATCTTTACTGGATTCACAAATCC
CAGCCTCACGATTACCACAAATCCAAATTTGGCAATGTTTAACCCCAATTAGCTGGCCAATTGATTGGCCAGGTCATGAT
CCTCACCCAGCAGCTAGCTGATACACACCACGCGGTGCAAACTTGCCCTACCCAACGCAAACCATGGTTG--GTTATGGT
TATATAAGAGAGGAAAGCTAGGTAGGCTGCGGAGCAGTAGGTCCCAACAATGGTGGTTTTCTGGGGTTTAGGACGGTCAT
ACTCAAAATCCAAACCTACCAACCCCACACCTCTCCCTCTCTTCCACCTCTGAGTCTGACCTCTCTCTCCTCCCGCCGCT
GTCCCAGCCCCACACCTCCTCC--CACCCCACCCCACCGCCGCGCGCACGTGCGTCGCTCTCCTCCTCGGCTCCGGCCAA
CAGGCGCCGCCGTCCGACGCATGTAACTGTGCCTAGCTGTCGTCTCTTCTCATGGACCAGCAGGGGGCGGCGCCGTCAAG
CAGCACCAGCACCAGCACCAACAGCAGCCGCAGCACGTCGGACCACCCCCACCACGCGTCGGCCGCCGCGCACCACCACC
CCTTCTACTACGCTGCCGCGGCGGCTACAGGCGCCACGCCGCCGCCGCCGTTCATGGGCTCGCTTGCGATGGTACCCGCG
GCTACCCCGGCGGGAGCGCAGACGGCCAACCACAGCCAGTCGATAACGGTGGCCGAGCCGCCGTCCGAGAAGAAGGTGGC
GAAGCGGCCGACCAAGGACCGGCACACCAAGGTGGATGGGCGCGGGCGGAGGATACGGATGCCGGCGCTGTGCGCGGCGC
GGGTGTTCCAGCTCACGCGGGAGCTCGGCCACAAGACCGACGGCGAGACCGTCGAGTGGCTTCTGCAGCAGGCCGAGCCC
GCTATCGTCGCCGCCACCGGCACCGGCACCGTCCCCGCCAACTTCTCCACGCTCGCCGCCTCCCTCCGCCCCGGCGCCTC
CTCCCGTGCCGCGCCCTTCCAGCACCACCTCCAGCACCAGCCGCAGCACGACGTGGCTGCCATGCTCGGGTTCCATGGCC
ACCATCAGCACCAGCTCCTCCCCCCGCCGCCGCAGCAGCAGCACCACCACCAGCACCCGGAGGCGCCGCAAGATCCTGGA
GCCGGGGAGTTCATGAGGAAGCGGTATAGGGAGGCGGACGACCTGTTCAAGGACACCGGACGCCATCAAGACCCGGAGGG
CGGCGGCGAGCCCGCGCAGAAGCCCAGGCCGGCGCCGCCACCCACTGCTGTTTCGGGGGCAATGTGGGCCGTGGCGCCGA
ACAGCGGCGCAGGCGCAGGCGGCGGCGCCTTCTGGATGCAGCCGGCATGGGCCTTCGGCGCCGGGAACACGGTGCAGGCG
CCGCTGCAGTTCATTTCAAGAAGCAGCTTCCCCGGCGGGATGGGCGACACGAATCTCGGCATGCTGGCGGGCCTCAACTC
CTGCGGCCGCTCCACCGGCGGCGAGCAGCAGCAGCACCAGCACCAGCAGCAGCCGCAGCAGGAGGAGGAGGAAGGGCAGC
CTCCCGAGATGGATCAGCACCGCCGAGGCAGCACCAGCGCCGGCGCGAACGGCCACGAGGCCGGCCACTCCGCCGCAAGC
CCGCAGTAAGCAAGCAACGAGAGCCATCCGTTCGGGCAACCAATCATGCAAGCATCTGGCATGGTGATCAGGGAGAGTGT
GTGGAGCACTTTAGCTAGCTGCTGCTGCACTAGTTAATTAATCAAATCAACCAATTGTTTAGTTTGTTCTTTTCTATTGG
GATTATTCTAGCTTGCCGTTCATTAATCCATGGTTTGTGCTGATGGAGGTGATGATTAGCAGTGGGTCCCATTGAACCAG
ACACTATTTGTTTAAGGCAACAAGGCTGAGTTTTGCACATTTTATCGTATCAGTTTTCTAGTATTGCTGTATATCATGGG
GAATCTATTTGTTCGATGCAAGTAATCCATGTTTAGAACAAGGTGATTTTCCATAGAATTCTTGCTAGGGCAAGAAATGC
TTGGAAGACGCAGCACTTTAACAGAACTAGCTAATTGCCATGTGTTGCAACAGGAG----CATATTCTAGTGATTCAATA
TCAATTTTGTCCTCAGTCGCAAAAAAAATATCAATTTTGTCTGACATATATACACCAACCATATTCTAGATTTTGGTAAG
ATTTAATTTTATTTAAGTATAGATAGGGAAAGGCAAGAAAAACATTGATTTAATTAAGGTTTGGTAAGATTTAATTTGAT
TGAGGTAT------------------------------------------------------------------------
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>chr7D_2839
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--------CACTAGTAGAAAAACGACTTTTAGTACCGGTTCTGGAACCGGTACTAAAGAGTGGGGACTAAAGGTCCCCCC
-TTTAATCCCGGTTTAACACGAACCGGGACCAAAGGCCCACCCCATGGCACGAGGCGCGCCGTGGTCTGGGGGACCTTTA
GTCCCGGTTGGTAAGGATTTTTTTTATTTTTATTTTTGAAATAAAGCAAAAACAGCCAGCCTACTGGGCCAGCACGGCCT
GCATACGACTAGAAACCCAATCTCTAGTTGGGCCAGGATGCAGGCCCGTACGGCCCAGTAGGCCCCATAGGGCGGAAGAC
TTGCAATAGGCCCACAAAGGCCTGTTTAGAGAGGAGCTCGACACGGTAGCCGCGGCGGGGCTTATAAACCGGTGCGAGCT
CCTCTCAACTAGCGAGGTGGGACTAAACATTGTGCACTGCGGGTGGCAGCGCACCAC-----------------CTTTAG
TACCGGTTGGTGGCTCCAACCGGTACTAAAG-------------------------------------------------
-------------------------------------------GTTCGCCACGAACCGGTACTAATGAGCGCCGCCCGCC
TGGCC
>chr1D_2874
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-------------------------------------------------------AAGAGTGGGGACTAAAGGTCCCCCC
CTTTAGTCCCGGTTCAACACGAACCGGGACCAAAGGCCCACCACGTGGCACGAGGCGCGCCGTGGTCTGGGGGACCTTTA
GTCCCGGTTGGTAAGGATTTTTTTTATTTTTATTTTTGAAATAAAGAAAAAACAGCCCGCCTACTGGGCCGGCACGGCCT
GCATACGACTAGAAACCCAATTTCTAGTTGGGCCAGGATGCAGGCCCGTACGGCCCAGTAGGCCCCACAGGGCAGAAGAC
TTGTAATAGGCCCACAAAGGCCTGCTTAGAGAGGAGCTCGACACGGTAGCCGCGGCGGGGCTTATAAACCGGTGCGAGCT
CCTCTCAACTAGCGAGGTGGGACTAAACATTGTGCACTGCGGGTGGCAGCGCACCAC-----------------CTTTAG
TACCGGTTGGTGGCTCCAACCGGTACTAAAGACCCCGCCCTTTAGTACCGGTTGGAGCCACCAACCCGTACTAAAGGCCA
CCACCTCTTTAGTACCGGTTCGTGGCACGAACCGGTACTAAAGGTTCACCACGAACCGGTACTAATGAGCGCCGCCCGCC
TGGCC
>SNPs
S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS-------------------------------------S-S---------------S-------------
SS--------SSSSSSSSSSS-------S------------S-------S-----------------------SS-----
--S-------------------S---S----S---S--------S-----S----------S----S------S------
-----S-S-S-S-S---S---------------------------------------------------S---S--SS--
-------------------------------S--S--------------SS-----------------------------
------S--S-----------------------------S------S-----------------------SSS-------
-------------S---S-------S------------------------------------------S-----------
---S------S-------------------------------------------S-------------------------
---S---S------------------------------------------------------------------------
------S---------------------------------------------------S-----------SS--------
----------------------S---------------------------------------------------------
-------------------------------------------------------------------------S------
--------------------------------------------------------------------------------
---------------S----------------------------------------------------------------
---------------------------------------------S----------------------------------
----------------------------------------------------------------S---------------
----------------S---------------------------------------------------------------
S-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------S--------------
--------S---------------------S-------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------S
----------------------S---------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------S-----------------------------------S--------------
--------------------------------------------------------------------------------
-------------------------------------------------------S--S--------S------------
----------------------------------S------------S--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------S--------S------------------
----------------------------------------------------------------S---S-----------
---------------S------S--------SS-------S-----S---------------------------------
-----------------------------------------SS-----------------------------S-------
-------S------------------------------------------S-----------------------------
---------------------------------------------------------S----------------------
-----------------------------------------------------S--------------------------
--------------------------------------------------------------------------------
--------------------------------------S--------SS-SSS-SSSSSSSSSSSSSSSSSSSS-----S
--------S-----S-S---------------------------------------------------------------
------------------------------------------------------------------S-------------
-----
>forward_235
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-------------------------------------------------------ACCGGCCATCCAATCAACTT-----
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>reverse_1136
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---------------AACGCATGTAACTGTGCCTAG--------------------------------------------
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>forward_551
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---------------------------------------------------GCAGACAAATTACCACGCCG---------
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>reverse_2368
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-----------------------------------------------TCAAGCATCTGGCATGGTGA-------------
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>forward_1441
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-------------------------------------------------------------CGTCAGAGAAGAAGGTGGC
A-------------------------------------------------------------------------------
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>reverse_3409
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------------------------------------------------CCAACCGGTACTAAAGGCCA------------
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