>input_sequence_53366
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----------------------------------------------------ATGGAGGGGTCCTCCTTCCCCGCCTCAT
CCTTCCAGCCCCCCGCCATCGCCCGCGCAAGCTCCCGGTACGCCCCCTGGGCCCTCCTCGACAGCAAGGCCTACTTCGCG
GCCCTCGAGAACGACACCACCGTCGAGGCCACCACCAGCACGGCAGCACCGGCCACGCCATCAGGGTCACCTTCTGCCTG
GC---CGACCCGCCGGCCATCTCCCACTTCTGCGTCCACGGCCCCGGGCTCGATCGCGAGGACTTCACGATGGAGCCCCA
GGTCCACTCCTCGGCCAAGGGCCTCGTCCTCCTCCGCTTCGCCTTCACCATCGGCCCCCGGGCCACCCACCGGCACAACC
GCC-----TCGCCGAGTACTACGTCTACAAGGCCGGCCGCGGCAAGCC---GCCGTCGCTCACGCCGATCCCGCGCACTC
CTCCGGGCACCGTAAACTCGTCCTACATCTGCGTCCTGCCGCTTGACGACGACGACGACGACGACGCCGGGAAATTCCTA
CTCGCCGAGCTCGGCATGACC---AGGTCCAACTCCGACTACGAGCTCTACGTCTTCTCCTCCAAGACCGGCGAGTGGAC
CATCAGGCAGTTGCGGCTGCAGACA---------CCTCCCGAGGTCAGGAACGAGGACCTGCCCGGCCCTCACATG---G
ACAAGGCGATCGCGCTCGGGGGAGGCGCCGTGGGCTGGGTGGACCTCTGGCGCGGCATCGTCACCTGCAACGTGCTCGAC
GACAACCCCGTTCTGACTCTCATCCCCATACCCACGT----------------GGGACGGTAAGCTGCG--GCGGCTGGC
CCGGGACATCACCTGCTGCAGCAATGGCTTCATCAAGCTTGTCGACCTGGACCTCCGTTTCAAAAAGATCGTCGCTGACC
ATAACCACAAGACTCGCAAGGTGGCCGAGGATCTCGACAGCGTAGACATCATCTACGATTCAGACCTGCT---CCTCTAC
GACGACGATGCATGCGCCGAACACA------CTTTTGTGAATGATGGTTGGAAGATCCGGACGTGCTACAGGCATACTTC
CTGGGACTACTGGCGCAAGGGGCACACCGTCGACATCGATGAAATCTCGGTCGACAACCCTGATCACTTTACGTCGCTCC
CACAGCTGTGGGACGCTGAAGCTGCTGGGAGACCGGCACTGAGGAACTTGCTTTCCGCTTTCCCTACCCTCGGCATTGGC
---GGCGACGACGACGACGTTGTTTACCTGATGTCTAAGGTGACATATGATGATAAGAACGCGTGGATGGTCGGTGTTAA
TCTTGGAAAGAAGACACTGGATGTGGCTGTGCCAGTTTCTTCCGAGAGAGTCGGTTATTACGAACCGGACT---TCCTCG
CTTGTGGATTCTCCGAATATCTGAACGCGACTCCAAGGTAA---------------------------------------
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>chr4B_1_TraesCS4B01G281300
GAGGAATTGCAAGGCCGGGAAGCAGGTCTAGCCTGCCCCTTGATCAGCCCGAACAGAACCAGCGAGGGAATTCGGTGGCA
ACAGAGACAAATTTTTTAACATCGCCCAAGTCGGCGAGATGAACCTAAAAGGCTAAAACCCTAATGAGAGGGAATTGTTG
CCGGTATATGCGGACTCTCCTAGAATTTACTCTAACAACTTAACGATCGGCGTCCCTAGGGAATTGTTGCCGGTATATGT
GGACTCTCCTAGAATTTACTCTAACAACTTAACTTAAAA-----------------------------------------
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----------------------------------------------------------------------ATATGTACAT
TACATTAAAAAAATTCTCATAAGTCTCAAAGGTTCGTGACATTTTCAAAAACAATGTTTGTACAATTT---AAAAAAAAT
CAAAGGTCAAAAAAAGGGGGGTTTATC--------ATTGTTTCAACATGTATTTAGAAATTGTTTGACACGTACTTGAAA
AATATATTCAAAGCATGCTTGTGTAAAAGAATATGTATTTAAAAAATGTTAAACATATATGAAAAATAGTTTACATGTAT
ACAAACAATATACAATATTTATT-AAAAAGTAGACGTGAGTTTAAAAACAAGCAAAAAAGAAACAAAAAGAAAAGTGAAG
ATACCAAAACAATCCAAAAACAAAACAAAGAAAACCAAAGTATAAAGAAGAAAAACCGAAGAAAACCATTAAAAACAAAT
-AAAAATCGAAAGCATACCGACAAAAAAAAGATAAACCAAAAAAAGAGCGAAAAAACAGAAAACGAAAG-AAAACGGACT
GAACCGATAAAGCTCAGCAACCCGACGTGA------------------------AACAACCAGTGGGCCGGTCCGTAGTC
GTCCGCCCGTACACGACTCCTATTGGGTC----------GTCTCAAAAAAAAAAAAGACTCCTATTAGGAATTGGTATAT
ACTTCTACTTCCCTTTTCAAAAGAAAAAACAGCACGTCGTC-------ATACACCCCCGATCGACACCGTAAAATCGTTC
GCTATCTTCCGACGAGCGCCTGCCGCTCCTCCGACTACTAGCAACC------ATGGAGGGGTCCTCCTTCCCCGCCTCAT
CCTTCCAGCCCCCCGCCATCGCCCGCGCAAGCTCCCGGTACGCCCCCTGGGCCCTCCTCGACAGCAAGGCCTACTTCGCG
GCCCTCGAGAACGACACCACCGTCGAGGCCACCACCAGCACGGCAGCACCGGCCACGCCATCAGGGTCACCTTCTGCCTG
GC---CGACCCGCCGGCCATCTCCCACTTCTGCGTCCACGGCCCCGGGCTCGATCGCGAGGACTTCACGATGGAGCCCCA
GGTCCACTCCTCGGCCAAGGGCCTCGTCCTCCTCCGCTTCGCCTTCACCATCGGCCCCCGGGCCACCCACCGGCACAACC
GCC-----TCGCCGAGTACTACGTCTACAAGGCCGGCCGCGGCAAGCC---GCCGTCGCTCACGCCGATCCCGCGCACTC
CTCCGGGCACCGTAAACTCGTCCTACATCTGCGTCCTGCCGCTTGACGACGACGACGACGACGACGCCGGGAAATTCCTA
CTCGCCGAGCTCGGCATGACC---AGGTCCAACTCCGACTACGAGCTCTACGTCTTCTCCTCCAAGACCGGCGAGTGGAC
CATCAGGCAGTTGCGGCTGCAGACA---------CCTCCCGAGGTCAGGAACGAGGACCTGCCCGGCCCTCACATG---G
ACAAGGCGATCGCGCTCGGGGGAGGCGCCGTGGGCTGGGTGGACCTCTGGCGCGGCATCGTCACCTGCAACGTGCTCGAC
GACAACCCCGTTCTGACTCTCATCCCCATACCCACGT----------------GGGACGGTAAGCTGCG--GCGGCTGGC
CCGGGACATCACCTGCTGCAGCAATGGCTTCATCAAGCTTGTCGACCTGGACCTCCGTTTCAAAAAGATCGTCGCTGACC
ATAACCACAAGACTCGCAAGGTGGCCGAGGATCTCGACAGCGTAGACATCATCTACGATTCAGACCTGCT---CCTCTAC
GACGACGATGCATGCGCCGAACACA------CTTTTGTGAATGATGGTTGGAAGATCCGGACGTGCTACAGGCATACTTC
CTGGGACTACTGGCGCAAGGGGCACACCGTCGACATCGATGAAATCTCGGTCGACAACCCTGATCACTTTACGTCGCTCC
CACAGCTGTGGGACGCTGAAGCTGCTGGGAGACCGGCACTGAGGAACTTGCTTTCCGCTTTCCCTACCCTCGGCATTGGC
---GGCGACGACGACGACGTTGTTTACCTGATGTCTAAGGTGACATATGATGATAAGAACGCGTGGATGGTCGGTGTTAA
TCTTGGAAAGAAGACACTGGATGTGGCTGTGCCAGTTTCTTCCGAGAGAGTCGGTTATTACGAACCGGACT---TCCTCG
CTTGTGGATTCTCCGAATATCTGAACGCGACTCCAAGGTAAATTTATTTTCTTTGATCATCTTTGCCTGAAGCTGTTCGG
TGAGCCTCTGAACAGCATGAACATTTTCTGCT-AAAATAGTTGTGTAATTTCTGAGTTCACCACTAGTTATTCTACCCGA
TGACATCTCACATCTTGC--TTGTTATTTGCTTCAGGGTTATT-------------------------------------
------ATCTCTCATCAGACAATGTGGTATGCTATGATCATCTCACTTTTTGATTGATGTGCATGCGTCCATTTGCCCAT
CTACATGCAGAAATTTCAGAACTGTACATTTACAGCCACCGCAGCAGAACATGTGGAACAACAATGTGTACTACTACAAT
GGGTGTTTCTATGGATATGGTTATGGCGCACAGCCAAGCAACAGCTACTACGTCAACTACCGGCATCCACCTGCGTGCTT
GGCTAACTTGCCACAGCCTCTGCTTCCCGGTTTTGCCTCGTACGGGCCAGGTAAATAGCATTGGCAAAGCTTCTGCTGTC
TTCTTTTACCCCAAGCATTACTCAACGAGTTAAACCAA-----------------------AAATATTTCTCAAGTGTTG
GTTTCAAAAGCTTGTCTTGTAGTAACTCTTACTGATGGTTTCACTTGCTTGCAGGGTGCGCCTATCCGGTGAACGCCCAG
TCGACATGCTACCCGGGATTGTACACTGATGCCTGTGGCCGACTATGGTGTGTCGCTCTGCCGCTGGGGTCGGCGCCGCC
CCCCTCGATTTCCCTTTCCCTGGTGCAATGGCAGTTGCCACCCAACCCGGGCCAACTCCACCACCCTGCCCTTTGCCAAC
CTCCCCCTCGCTCGTATCTGCCCTAGCTCTGCTTGTAACAAGCCTTCACCGGCTTGTACTGTGAAAGGCGAACAAAAAAT
ACCTGGGTAGGGAAATGGGGAAGTGAAACTGAGATGGAGAGTGAACTCTGACGGTGAAAAGGAGAACCAGC---TTCTAG
CCATTTTCTTTGCAGTGAATGGTAAAGGTTGCTAGCCCCAAATGGGTTACGTTTTATGCCGGTAGAGTTGCTT
>chr4D_1
GAGGAATCGCAAGGCCGGGAAGCAGGTCTAGCCTGCCCCTTGATCAGCCCGAACAGAACCAACGAGGGAATTCGGTGGCG
ATAGGGACAAAAAATTTAACACCGCCCAAGTCGGCGAGATGAACCTAAAAGGCTG-AAACCTAATGAGAGGGAATTGTTA
CCGGTATA---------------------------------------------------------------------TGT
GGACTCTCCTGGAATTTACTCTAACAACTTAACTTAACGATCGGCGTCCCTACAGGCCAAGACTAGTTGTATGTACTCCC
TCCATTCTTGAAAGAGTGTACTTCCAACTTTGTTGGAAAGTCAAACTTTTTTATGTTTGACCGTATTTATACAATAATAG
ACCAACATTTATGCTATCAAATTAGTAGCATTAGATTCATGATAAAATATATTTTCGTGATATACCTATTTGGTTTCACA
AACATTGACATATTTTTGCACAAACTCGGTCAACTTTAAGATAGTTTGACCCTCCAACAAAGTTGGAATTACACTCTTTT
AAGGACGGAGGGAGTAGATAAGGAAGCCAATGCAAATCCACACACCGGTATATGTTTATGTTGTATACAAAAAATGTATA
AATGTGAATGTATAAATTAGATATTCATGTGTAGTAAAAATGTTAATCATCTCTACGAAAAATGTTTGTGACAAATATAA
AATGCGGCACATTTGAAAAGAAATGTACATGAAAAAATGTTCGTATAATTCAATAAAAATGTTTCAAAATATATATACAT
TACATTTAAAAAACCTTCACAAGTCTCAAAAGTTCGTGACATTTTCAAAAAAAATGTGTGTATAATTTTTTAAAAAATTA
CATAGGTAAAAAAATAGACGGTTTTATCATTGAAAATTGTTTCAACATGTAT--AGAAATTGTTTGACACATATTTGAAA
AATATATTCAAAACATGTTTGTGTAAAAGAATATGTATTTAAAAAATATTAAACATGTATGAAAATT-------------
------AATATAAAATATTTATTAAAAAAGTAGACGTGTGTTTAAAA--AAGCAAAAAAGAAACAAAAAGAAAA-TGAAG
ATACCAAAACAATCCAACAACACAACAAAGAAAACCAAAGTATAAAGAAGAAAA-----------CCGTTAAAAACAAGT
AAAAAATCGAAAGCATAACGAAAAAAAAGGGAGCCAA-------------AAAAAACATAAAACGAAAAAAAAACGGACT
GAACCGATCAAGCTCAGCGACCCGACGTGAACGAGCGAAGAAGGCATCAAATGAAACAACCAGTGGGCCGGCCCGTAGTC
GTCCGCCCTTACACGACTCCTCCTATTAGGAATCGGTTTGTCTCAAAAAAAAAACAA------ATTAGGAATCGGTATAC
----------CCCCTCAAAAAACAAAATTTAGCACGCCCTCATATATGATATACCCCCGATCGACACCATAAAATCGTCC
CCTATCTTCCGACGAGCGCCTGCCGCTCCTCCGACTACTAGCAACCATGGAGATGGAGGGGTCCTCCTTCCCCGCCTCCT
CCTTCCAGCCCCCGGCCATCGCTCGCGCCAGCGCCCGGTACGCCCCCTGGGCTCTCCTCGACAGCAAGGCCTACTTCGCG
GCCCTCGAGAACGACACCACCGGCGAGGCCACCAC--------CAGCACCGGCCACGCCGTCAGGGTCACCTTCTGCCTG
GC---C---CCGCCGGCCATCTCCCACTTCTGCGTCCACGGCCCCGGGCTCGACCGCGAGGACTTCACGATGGAGCCCCA
GGTCCACTCCTCGACCAAGGGCCTCGTCCTCCTCCGCTTCGCCTTCACCATCGGCCCCCGGGCCACCCACCGGCACTCCC
GCC-----TCGCCGAGTACTACGTCTACAAGGCCGGCCGCGGCAAGCC---GCCGTCGCTCACGCCCATCCCGCGCACTC
CTCCGGGCACCGTAAACTCGTCCTACATCTGCGTCCTGCCGCTTGACGACGACGACT---------CCGGGGAGTTCCTC
CTCGCCGAGCTCGGCATGACC---AGGTCCAGCTCCGACTACGAGCTCTACGTCTTCTCCTCCAAGACCGGCGAGTGGAC
CATCAGGCAGTTGCGGCTGCAGACA---------CCTCCCGGGGTCAGGGACGAGGACCTGCCCGGCCCTCACATG---G
ACAAGGTGATCGCGCTCGGGGGAGGCGCCGTGGGCTGGGTGGACCTCTGGCGCGGCATCGTCACCTGCAACGTGATCGAC
GAGAACCCCGCTCTGACTCTCATCCCCATACCCGCGT----------------GGGACGGTAAGCTGCG--GCGGCTGGC
CCGGGACATCACCTGCTGCAGCAATGGTTTCATCAAGCTTGTCGACCTGGACCTCCGTTTCAAAAAGACCATTGTTGATC
CTAACCACAAGACTCGCAAGGTGACCGAGGATCTCGACAGCGTAGACATCATCTACGATTCAGACCTGCT---CCTCTAC
GACGACGATGCATGCGCCGAACACA------CTTTTGTGAGTGATGGCTGGAAGATCCGGACGTGCTACAGGCATACTTC
CTGGGACTACTGGCGCAAGGGGCACGCCGTCGACATCGATGAAATCTCGGTCGACAACCCCGATCACTTTACGTTGCTCC
CACAGCTGTGGGACGCTGAA---GCTGGGAGACCGACACTGAGGAACTTGCTTTCCGCTTTCCCTACCCTCGGCATTGGC
ATTGGCGGCGACGACGATGTTGTTTACCTGATGTCTAAGGTGACATATGATGATAAGAACGCGTGGATGGTCGGTGTTAA
TCTTGGAAAGAAGACACTGGATGTGGTTGTGTCAGTTTCTTCCGAGAGAGTCGGTTATTACGAACCGGACT---TCCTCG
CTTGTGGATTCTCCGAATATCTGAATGCGACGCCAAGGTAAATTTATTTCCTTTGATCATGTTTGCCTAGATCTGTTCGG
TGAACCCCTGAACAGGATGAAGATTTTCTGCTAAAAATAGTTGTGTAATTTCTGAGTTCACCACTAGTTATTCTACCCGA
TGACATCTCACATCTAGTTGTTGTTATTTGCTTCAGCAGATGCGCCGATGAAGTTGCCAGCGCACCGAATCAGGCTCAGG
ATTATCATCTTTCATCAGACAATGTGGTATGCTATGATCATCTCAATTTTTGATCGATGTCCATGCGTCCATTTGCCTAT
CTACATGCAGAAATTTTATAACTGTACGTTTACAGCCACTGCAGCAAAACATGTGGAACAACAATGGGCACTACTACAAT
GGGTGTTTCG------ATGGTTATGGCACACAGCCAAGCAACTGCTAT---GTCAACTACCAGCATCCACCTGCATGCTC
GGCAAACTTGCCACAACCTCTGCATCTCAATTTTGCCTCGTACGGGCTAGGTAAACAACATTGGCAAAGCTTCTGTTGTC
TAATTTTA-CCCAAGCATTACTCAACGAGTTGAACCAAAAAGTAGCTGGAGTACTAACACTAAATATTGCTCAAGTGTTG
GTTTCAAAAGCTTGTCTTGTGACTC----TACTAATGGTTTCATTTGCTTGCAGGGTGCGCCTATCAGGTGAACGCCCAG
TCCATATGCTACCCGGTATTGTATACTGATGCCGGTGGCCGACTATGGTGGGTCGCTCTGCCGCTGGGGTCGGCGCCGCC
ACCCTCGATTTCCCTA------GTGCAATGGCAGTTCCCACCCAACCCGGGCCAACA-----------------------
-----CCTCGCTCGTATCTGCCCTAGCTCTGCTTCTAACAAGTCTTCACCGGCTTGTACTGTGAAAGGTGAACGAAAAAT
ACCTGGGTAGGGAAATGGGGAAGTGAAACTGAATTGGAGAGTTAACTCTGACGGTGAAAAAGAAGAAAAACAGTTTCTAG
CCATTTTCTTGGCAGTGAATGGTAAAGGTTGCTAGCCCCA---------------------------------
>chr4A_960
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-----CTTCCGACGAGCGCCTGCCCCTCCTCCGACTACTAGCAACCATGGAGGTGGAGGGCTCCTCCTTCCCCGCCTCCT
CCTTCCAGCCCCTCGCCATCGCCCGCGCCTGCGCCCGGTACGCCCCCTGGGCCCTCCTCGACAGCAAGGCCTACTTCGCG
GCCCTCGAGAACGACACCACCGCCGAGGCCACCAC--------CAGCAGCGGCCACGCCGTCAGGGTCACCTTCTGCCTG
GCCGAC---CCGCCGGCCATCTCCCACTTCTGCGTCCACGGCCCCGGGCTCGACCGCGAGGACTTCACGATGGAGCCCCA
GGTCCACTCCTCGGCCAAGGGCCTAGTCCTCCTCCGCTTCGCCTTCACCATCGGCCCACGGGCCATCCACCGACACAACC
GCC-----TCGCTGAGTACTACGTCTACAAGGCCGGCCGCGGCAAGCC---GCCGTCGCTCACGCCCATCCCGCGCACTC
CTCCGGGCACCGTAAACTCGTCCTACATCTGCGTCCTGCCGCTTGACGACGACGAG---GAGGACGCCGGGGAGTTCCTC
CTCGCGGAGCTCGGCATGACC---AGGTCCAACTCCGACTACGAGCTCTACGTCTTCTCCTCCAAGACCGGCGAGTGGAC
CATCAGGCAGCTGCGGCTGCAGACA---------CCTCCCGGGGTCAGGAACGAGGACCTGCCCGGCCCTCACATG---G
ACAAGGCGATCGCGCTCGGGGGAGGCGCCGTGGGCTGGGTGGACCTCTGGCGCGGCATCGTCACCTGCAACGTGCTCGAC
GACAACCCCGTTCTGACTCTCATCCCCATACCCACGT----------------GGGACGGTATGCTGCG--GCGGCTGGC
CCGGGACATCACCTGTTGCAGCAATGGTTTCATCAAGCTTGTCGACCTGGACCTCCGTTTCAAAAAGACGGTTGTTGATG
CTAACCACAAGACTCGCAAGGTGGCCGAGGATCTCGACAGCGTAGACATCATCTACGATTCGGACCTGCT---CCTCTAC
GACGACGATGCATGCCGTCG------------------------------------------------------------
-----------------------ACATCGTCGACATCGATGAAATCTCGGTCGACAACCCCGATCACTTTACGTTGCTCC
CACAGTTGTGGGACGCTGAA---GCTGGGAGACCGACACTGAGGAACTTGCATTCCGCTTTCCCTACCCTCGGCATTGGC
---GGCGACGACA---ATGTTGTTTACCTAATGTCTAAGGTGACATATGATGATAAGAACGCGTGGATGGTCGGTGTTGA
TCTTGGAAAGAAGACACTGGATGTGGTTGTGCCAGTTTCTTCCGAGAGAG-------------ACCGGACT---TCCTCG
CTTGTGGATTCTCCGAATATCTGAATGCGACGCCAAGGTACATTTGTTTCCTTTGATCATGTTTGCCTAGAGCTGTTCGG
TGAACCTCTGAACAGGATGAAGATTTTCTGTT-AAAATAGTTGTGTAGTTTCTGAGTTCATCACCAGTTGTTCTACCTGA
TGACATCTCACATCTAGTTGTTGTTATTTGCTTAAG--------------------------------------------
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>chr4A_971
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----------------CGCCGCCGCGACTGCCAAGTACTGGCAACAATGGAGGG---------ATACTTCCTCGCCTCCT
CCTTCCAGCCACCCGTTGTCACTCGCGCCAGCGCCCGCTATGCCCCCTGGGTTCTCCTCGACAAGAAGGCCTACTTCGCC
GTCCGCGAGAACGCCACCACCGCCGAAGCCGTTAC--------CAGCACCGGCAACGCCTTCAAGCTCACCTTCTGCCTG
GCCGAC---CCGCCGGCCATCTCCCACTTCTGCGTCCACGGCCCCGAGTTCCAGCGCGACGACTTAGCGACCGAGCCCCT
GGTCGTCTCCTCGGTCAAGGACTTCGTGCTCCTCTGCTTCA------------GTTCCCGGAGAAGCGGTCGGGGATCTT
TCC-----TCCTGGAGTACTTCGTCTACAAGGCCAACTACGGCAAGCC---G---TCGCTCACACTAATCCCACGTACTC
CTTCGGGCACCACAAACTTGTTCCACGTGTGCGTCTTGCCAATCGACGATGAT---G---------AAGGGGGATTTGTC
GTGGCAGATCTCTCCATGACA---GTGCCCCCATCAGGCTACGAGCTCCACGTTTTCTCTTCCAGGACAGGCAAGTGGGC
CACTACGACGTTGCGGTTGCAAACA---------TATCCCGGGGTGAGGAAAGAAAACCTGCCGGGCCATATT---TTTG
ACAAGGCGGTCGCGCTCGGAGGAGGTGCTGTCGGCTGGATCGACCTCTGGCTTGGCATTGTCACCTGCAATGTCTTTGAC
AAGAACCCGGTTCTAAGTTTCATCCCGATACCCA----------------------------------------------
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>chr4D_990
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-----------------------------------TACTGGCAACAATGGAGGG---------ATACTTCCTCGCCTGCT
CCTTCCAGCCACCCGTTGTCACTCGTGCCAGCGCCCGCTAGGCCCCCCGGGTTCTCCTCGACAAGAAGGCCTACTTCGCC
GTCCGCGAGAACGCCACAACCGTCGAAGCCGTTAC--------CAGCACCGGCAACGCCTTCAAGGTCACCTTCTGCCTG
GCCGAC---CCGCCGGCCATCTCCCACTTCTGCGTCCACGGCCCCGAGTTCCAGCGCGACGACTTAGCGACTGAGCCCCT
GGTCGTCTCCTCGGTCAAGGACTTCGTGCTCCTCTGTTTCA------------GTTCCCGGAGAAGCGGTCCGGGATCTC
GCC-----TCCTGGAGTACTTCGTCTACAAGGCCAACCACGGCAAGCC---G---TCACTCACACTGATCCCACGTGCTC
CTCCGGGCACCACAAACTTGTTCCATGTGTGCGTCTTGCCAATCGACGATGAT---G---------TTGGGGGATTTGTC
CTGGCAGATCTCTCCATGACA---GTGCCCCCATCAGACTACGAGCTCCACGTCTTCTCTTTCAGGACAGGCAAGTGGGC
CACTACGACGTTGCGGTTGCAAACACATAGCGCATATCCCGGGGTGAGGAAAGAAGACCTGCCGGGCCATATT---TTTG
ACAAGGCGGTCGCGCTAGGAGGAGGTGCTGTCGGCTGGATCGACCTCTGGCTTGGCATTGTCACCTGCAATGTCTTTGAC
AAGAACCCGGCTCTAAGTTTCATCCCGATACCCA----------------------------------------------
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>chr4B_993
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--------------------------------------TAGCAACCATGGAGGG---------ATACTTCCTCGCCTCCT
CCTTCCAGTCTCCCGTCGTCACTCGCGCCAGCGCCCGCTATGCCCCCTGGGTTCTCCTCGACACGAAGGCCTACTTCGCC
ATCCGCAAGAACGCCACGACCGCCGAAGCTGTGAC--------CAGCACCGGCAACGCATTCAAGGTCACCTTCTGCCTG
GCCGAC---CCCCCGGCCATCTCCCACTTCTGCGTCCACGGGCCCGAGTTCCAGCGCGACGACTTAACGACCGAGCCCCT
GGTCGTCTTCTCTGCCAAGGACTTCGTGCTCCTCCGCTTTA------------TTTCCGGGAGAACCCGTCCGGGATCTC
GAC-----TCGAGGAGTACTTCGTCTACAAGGCCGACCACGGCAAGCC---G---TCGCTCACACTGATCCCGCGTACTC
CTCCAGGCACCACAAACTCGTCAAGCTTGTGCGTCCTGCCATTCGACGATGAT---G---------ATGGGGGATTTGTC
GTCGCAGATCTCTGCAAGACACTAGTGTCCCCGTCAGACTACAAGCTCCACGTCTTCTCTTCCAGAACAGGCAAGTGGGC
CACTATGCCTTTGCGGTTGCAAACA---------TATGCCGGGGTGAGGAAAGAGGACCTGCCGGGCCATTTT---TTCA
ACAAGGTGGTCGCGCTCGGAGGAGGTGCCGTCGGCTGGACCGACCTCTGGCGTGGCATTCTCACCTGCAATGTGTTTGAC
AAGAACCCCGTTCTAAGTTTCATCCCGATACCCA----------------------------------------------
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>chr3D_996
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-----------------------------------------CAACCATGGAGGT---------CTCCTTCCCGGCATCCT
CCTTCCGGCCCCCCGCCATCGACCGCGCCAGCGCCCGCTACGCGCCCTGGGCTCTCGTCGACAGGGATGCCTACTTCGCC
GCCCACGAGAACGACACCACCGCCGAGGCTGTCAC--------CAGCACCGGCCACGCCGTCAGGGTCACCTTCTGCCTC
GCCGAC---CCGCCGGCCATCTCCCACTTCTGCGTCCACGGCCCCGCGTTTGACCGCGACGACTTCACCATGGAGCCCCA
GGTCCACTCCTCGGCCAAGGGCCTCGTCCTCCTCCGTTTCGCCTTCACCGTCGGCCCCCGGAGCACCCATCGGGGCTCCC
GCC-----TCGCCGAGTACTACGTCTACAAGGCCGGCCGCGGCAAGCCTCCG---TCGCTCACGCCGATCCCGCCCACTC
CTCCGGGGGCCACAAACTCGTTCCACACCTGCGTCCTGCCGCTCGATGACGACGACG---------ACGGGGAGTTCTTC
CTCGCCGAGCTCAGCATGACG---AAGTCCCGCTCCGACTACGGGTTACACGTCTTCTCCTCCAAGGCCGGCGAGTGGAC
TGTCAGACAGTTGCGTCTGCAGACA---------CCTCCCGGGGTCAGGAAGCGGGACCTGCCCGGCCCTAACGACCTTG
ACAAGGTGATCACGCTCGGCGGAGGCGCCGTAGGCTGGGTCGACCTCTGGCGCGGCATTGTCACCTGCAACGTGCTTGAC
GAGAGCCCCATCCTAACCTTCATCCCCATACCCATGCTTGAAGGCAACGTGGACCGGGAAGGTAACTCC---CGGCTGTT
CCGGGACATCACCTGCTGCGACAATGGTTTCATCAAGTTCGTTGAGCTGGATCTCCGTTTCAAAAAGGTCCCTGATCATC
ATAATTACAAGACTCGCAAGACGACCAAGGATCTTGACAGCGTAGAAATCATGTATGATTCGGACCTGCTATTGTATTAC
GATTACCCTCTG------GAACATA------CTCTTGCCGATGATGGTTGGAAGCTCCGGACGTGTTACAGGCATACTTC
CTGGAACTACTGGCGCAAGGGGCACGCCGTCGATATCGACGAGATCTCGGCCGACAACCCTGAGCATTTTATGTTGCTCC
CACAGCTATGGGATGCTCGA---GCCGGGAGGTCGACGCTGAGGAACACGTATTCGGCTTTCCCGACCCTAGGCGTTGGC
---GGC------AGCGATGTTGTTTACCTCATGTCTAAGCTGGGATATCATGCCAAGAACGCGTGGATGATCGGCGTCGA
CCTTGGAGAAAAGAGGGTGGATGTGGTTGTACCAGTTTCTTCTGAGAGAGTCGGTTATTTCAAGCCGGAGT---TTCTCG
TATGTGAATTCTCCGAATATCTGAATGCGACTCCAAGGTAAA-TAAATTTCTTTGATCATGGTTGCACAAGTCAGTTCGG
T-------------------------------------------------------------------------------
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>chr4B_1017
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--------------------------------------------------------------------TCCCCGCCTCCT
CCTTCCAGCCTCCCGCCGTGATTCGCGCCGGCGCCCGCTACGCCCCCTGGGTTCTCCTCGACAGAAAGGCCTACTTGGCC
ATCCGCGAGAACGCCACCACCGCCGAAGCCCTCAC--------CAGCACAGGCCGCACCGTCAAGGTCACCTTTTGCCTC
GCCGAC---CCGCCCGCCATCTCCCACTTCTGCGTCCACGGCCCCGATTTCCGGCGCGGCGACTTCGCGAGCGAGCCCCT
GGTCGTCTTCTCGGCCAAGGATCTTGTGCTCCTCCGCTTCGCCTTCACTGTCG---------------------------
GCC-----GCCTCGAGTACTTCGTCTACAAGGCCGGCCGCGGCAAGCC---GCCGTCGCTCACGCGGATTCCTGGTACTC
CTGCTGGCACCGCCAACTCGTTACACAAGTGCGTCTTGCCGTTCGACGACGA---------------AGGGGGATTCCTC
ATCGCCGATCTCTTCATGACG---AAGCTCCGTTCAGACTACCAGCTCCAAGTCTTCTCTTCCAAGACGGGCAAGTGGAC
CATCACGGCATTGCGGTTGCAAACA---------TCTGCCGGGGTCAGGGAAGAGGACATGCCCGGCCCTCGT---CTCG
ACAAGGCGATCGCCCTGGGAGGAGGTGTCCTAGGCTGGGTCGACCTCTGGCGCGGCATTGTCACCTGCAACGTGTTTGAC
AAGAACCCTGTCCTATCTCTAATCCCGATACCCAAGCTTGCATACTCTAATGAGGAACGGAGAGCTGCCCCGCGGCTGGT
CCGGGATGTCACCTGCTGCA---ATGGTCACATCAAGTTTGTCGAGCAGGAACTTCGGTTCAAAGTGTCTATTATTCCTA
GAAAGACTCTAGAGG------------ATAATGTTGATAGCGTCGACATCATCTCCGATCCTCGGCCGCTCTCCCACAAG
GAGGAGGATGCCCGTGCCAAACTCGTGCTAGCTGCTGTCTGTCTTGGTTCGAAGCTCCGAACATGTGATAGGCATACCAC
CTGGAACGATTGGCGCAAGGGGCACACTGTTGATATGGATGCCATCTCGGTTGACAACCCTGACCATGCTAGGTTGCTCC
CACAGCTCTGGGATGCTCAA---GCCGGGAAATCAACTCTGTGGGATCTGTCTTCAACTTACCCCACCCTAGGCATCCAT
---GGC------GACGACGTTATTTACATGGTGACTAAGGTAAAGTTTCATGATAACAAGGCATGGATGATCGGTGTCGA
CCTTGCAAAAAGGGCGGTGGAAGTGCTCATACCAGTTTCTTCACAGAGAGTCGGTAATTTCAAACCTGACATGATCCTCG
CCTGTGAATTCTCTGAATATCTGAACGCAACTGCAAGGTACATTTCTTT-------------------------------
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>chr4D_1017
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--------------------------------------------------------------------TCCCCGCCTCCT
CCTTCCAGCCCCCCGCCGTGATTCGCGCCGGCGCCCGCTACGCCCCCTGGGTTCTCCTCGACAGAAAGGCCTACTTGGCC
GTCCGCGACAACGCCACCACCGCCGAAGCCCTCAC--------CAGCACAGGCCGCACCGTCAAGATCACCTTCTGCCTC
GCCGAC---CCGCCCGCCATCTCCCACTTCTGCGTCCACGGCCCCGAGTTCCGGCGCGGTGACTTCGCGAGCGAGCCCCT
GGTCGTCTTCTCGGCCAAGGATCTTGTGCTCCTCCGCTTCGCCTTCACTGTCG---------------------------
GCC-----GCCTCGAGTACTTCGTCTACAAGGCCGGCCGCGGCAAGCC---GCCCTCGCTCACGCGGATTCCTCGTACTC
CTCCTGGCACCGCCAACTCGTTACACAAGTGCGTCTTGCCGTTCGACGACGACG------------ATGGGGGATTCCTC
ATGGCCGATCTCTTCATGACG---AAGCTCCGCTCAGACTACCAGCTCCAAGTCTTCTCTTCCAAGACGGGCAAGTGGAC
CATCACGCCGTTGCGGTTGCAAACA---------TCTCCCGGGGTCAGGGAAGAGGACCTGCCCGGCCCTCGT---CTCG
ACAAGGCGATCGCGCTGGGAGGAGGTGCCGTAGGCTGGGTCGACCTCTGGCGCGGCATTCTCACCTGCAACGTGTTTGAC
AAGAACCCCGTTCTAAATTTAATCCCGATACCCA----------------------------------------------
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-------------------------------------------------------------------------
>chr4D_1052
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-----------------------CGCGCCAGCGCCTGCTACGCCCCCTGGGTTCTCCTCGACACGAAGGCCTACTTCGCG
GTCCGTGAGAACGCCACGACCGCCGAAGCTGTGAC--------CAGCACCGGCAACGCATTCAAGGTCACCTTCTGCCTG
GCCGAC---CCGCCGGCCATCTCCCACTTCTGCGTCCACGGGCCCGAGTTCCAGCGCGACGACTTAACGACCGAGCCCGT
GGTCGTCTTCTCTGCCAAGGACTTCGTGCTCCTCCGCTTTA------------TTTCCGGGAGAACCCGTCCGGGATCTC
GACTCGAGTCGAGGAGTACTTCGTCTACAAGGCCGACCACGGCAAGCC---G---TCGCTCACACTGATCCCGCGTACTC
CTCCAAGCACCAGAAACTCGTTAAGCTTGTGCGTCCTGCCATTCGACGATGAT---G---------AT-GGGGATTTGTC
GTCGCAGATCTCTGCAAGACACTAGTGTCCCCGTCAGACTACAAGCTCCACGTCTTCTCTTCCAGAACAGGCAAGTGGGC
CACTACGCCTTTGCGGTTGCAAACA---------TATGCTAGGGTGAGGAAAGAGGACCTGCCGGGCCATTTT---TCCA
ACAAGGTGGTCGCGCTCGGAGGAGGTGCCGTCGGCTGGACCGACCTCTGGCGTGGCATTCTCACCTGCAATGTGTTTGAC
AAGAACCCCGTTCTAAGTTTCATCCCGATACCCA----------------------------------------------
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-------------------------------------------------------------------------
>SNPs
-------S-----------------------------------------------------S-----------------S
-S--S------SSS-------S--------------------------------SS--S--------------------S
--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---
----------S--------------------------SS-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
------S------SSS---S----------S--------------------S-----S----S--------------SSS
--S----S------SS-SS-----SSS-------------------------SS----------------S--S------
------------S----S-----------------------------S--------S--------S-SSSSSSSSSSSSS
SSSSSS------S-------------------------S--------SS-------------------------S-----
-----------------S----S-------------------------------SSSSSSSSSSS--S----------S-
-----------------S---S------SS--SSS-SSSSSSSSSSSSSS--------S---------S-----------
--------S---------S----------------------------------------------------S--------
--------S------------SS-SSSSS-------------------------S-SSSSSSS---------S------S
SSSSSSSSSS---S-SSS----S----SSS------S-S------------S----------------S---------S-
S-----------------------------------------------------------------------------S-
----------------------------S---S-----------------------------------------------
-----------------------------------SSSSSSSS----------------S--------------------
------SSS--------------------------------------------S--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------SS--S---------S-------S
--------------------------------------------------------------------------------
-----------------------------------------S--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------S--------------------------------------------S-S---S-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
--------------------SSS------------S--------------------------------------------
--------------------------------------------------------------------------------
--------------------------S-----------------------------------------------------
------------------------------------------------------------S-------S-----------
---S-----------S-----S----------------------------------------------------------
---------------S-S------------------SSSSSSS-------------------------------------
----------S----------------------------------S--------S-----S----------------S--
----------------S-S--------S-----------S------S-------------------S-S-----------
---------SSSSSSS-----------S--------------S----SSSS----------S------------S----S
---S-----------S-------S--S-SS-----------------S-------S-S-----------------S----
-SS-----S----------------------S------------------------------------S-----------
--------------------SSSSSSSSS----S---------S----------------------S-------------
--S-S-----------S------S---------S----------------S-----------------------------
S--------------SSSSSSS--------------S-------------------SSSSSSSSSSSSSSSSSSSSSSSS
SSSSS-----------------------------S-------S-------------------------S----S------
--------------------------------SS--------S-----------------S--SS-SS-S----------
----------S-----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_177
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------TTG
CCGGTATATGCGGACTC---------------------------------------------------------------
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-------------------------------------------------------------------------
>reverse_1740
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-----------------------------------------------------------ATCAGGGTCACCTTCTGCCT-
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------
>forward_179
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------G
CCGGTATATGCGGACTCTC-------------------------------------------------------------
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-------------------------------------------------------------------------
>reverse_2072
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------AAATTCCTA
CTCGCCGAGCT---------------------------------------------------------------------
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-------------------------------------------------------------------------
>forward_180
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
CCGGTATATGCGGACTCTCC------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------
>reverse_2756
--------------------------------------------------------------------------------
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-----------------------------------GCACTGAGGAACTTGCTTTCC------------------------
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-------------------------------------------------------------------------
>forward_1386
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----CCCGTACACGACTCCTATTGG------------------------------------------------------
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-------------------------------------------------------------------------
>reverse_3320
--------------------------------------------------------------------------------
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---------------------------------------CGCAGCAGAACATGTGGAAC---------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------------------------
