>input_sequence_53360
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-------------------------------------------------------------------ACACCATCACGAT
CGAGCACTCGCAACAGCTTCACTCAACTCGCAGT-GAAGATCACCTAGAGACCGACTAGCAGTGATCGATGGCGTCCGTC
CGGCGCCCGTGCGCGGTGGCGCTGCTCGCCTGCGCCGCCGCATTCCTCGTGACGGTCGGTGCCCAGCCGAAGGACAACCC
CATTTTGTCGGACCCCAACGTGGTCCCCATCTACATGAGCCCCGGCGCGCAGCCCACCGTGGTGAGCTGCTACAACCAGA
GCAGCCCGTCGCAGGCCCCAGAGTGCATGATTCCGGTGCGCCGGTGCCCCGCCGGCTGCCGCGACCTCTGCTACGTGCAC
TGCCCCAGCTGCAAGCTCGTCTGCAGTAAGAACACCACGCACATACACGTCCATGTTTTTTTTTTGCATTCATTTCACAG
TTG--AAGTTGCTGA---------TCGATCGTGTGCTTGGCGCATCATTGGAACCCAACAGTGTGTGAACTGGCCGGCAC
GGAGTGCTACGACCCGCGCTTCGTGGGTGGCGACGGCAACAAGTTCCTCTTCCACGGCCGCAGGGACGCCGACTTCTGCC
TGCTCTCCGACGCCAACCTGCACATCAACGCGCACTTCATCGGCAAGCGCAACGTGAAGG------CGGCGCGTGACTTC
ACATGGGTGCAGGCGCTCGGCATCCGCTTCGGTGGCCACCGCCTCTACCTCGGCGTCAAGAGGACGGTCACCTGGGACAA
CGCCGTCGACCGCCTCGTCATCACCTTCGACGGCGTGCCCGTCGAGCTGGACGCGGCGCCGGCCGCCAGCTGGAGCCCGG
CCTCCGCGCCCGCGCTGTCCGTCTTCCGCATCGGCAAGGCCAACGGCGTGGTGGTGCGCCTCGACGGCCGGTTCCGCATC
GTCGCCAACGCGGTGCCGGTGACTGAGGAGGACTCGAGGGTCCACGACTACGGCCTCACCGCCGA---CGACAGCCTCGC
GCACCTCAACGTCGCATTCAAGTTCAACTCCATCAGCGCCGACGTGCACGGCGTGCTCGGCCAGACCTACCGCCCGGACT
ACGTCAGCGCCGGGGTTGACATGGGCGCCAAGATCCCGGTGATGGGGGGTGCCGCAAAGTACCAGGTGTCGGACATCTTC
GGGACGGACTGCGAGGTGGCGCGCTTCGCCGGAGAGGACGTCGTCCGCGTCGGGGCGGTCGACATGATCGACGAGCCGGC
CGACACCATGTGCGGCAGCGGCAAGGGCAGCGCCGGGCTGGTCTGCAAGAAGTGAAGTACGAGTATTGCGAGCTGATTTT
GCTTCATTACCCTCGTAAGTGTGCCCATACACGTCTACGTGCTCGCTGCTGCTACACCACGTTAT---TGGTA-------
----GTAGCTCCGCATTTGCTTTCCAAATAAA------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------
>chr2A_1_TraesCS2A01G294100
GGGTTTTATCTCTTCGAGAGGGCCCGAACCTGGTTAAACATTGTCTCATTCGTCTCTTGTTCCCCATCGATCCAAAATCC
ACATCTCGGGACCCCCTATCCGAGATCCGCCGATTTTTGACACTGACACCGGCCGCCATGGTTGTAGCACCGGGGCACCT
CGGTTCCCAGTGTCTGGCCTGCCGCCGGTTGCAGCAAACAACTTATGGTTCCAGCATCGCCGTACGCGCAATGCTCTTGC
TATCGTGTTCATCTCTAGTGAGAGACGATCGTTGGGGATCAGGAGATCAGGACCCGTGAGCGTCGGTCATTGGAGAGAAA
AAAAGGACAGGGAAAAGAGAGAGATCTGTTCGGGACGGTGAAGGGGGGGGGGTGTCTCGACAACGACACCGATGGTGCGG
GATGGCGGACCGGAGTTGTGACGACGCCGGTGGTGCAGGACGGAGGAGCTGCGATTCTGAGCTGCGCTGCGAGGAAGAAA
GCGTTCGATGTGGATAAGGGAGGGGCGCCTGCTATTGCTGGCCACATGATCGCGATCAATCGCCTGGCTTGCATCAGAGC
GGCGCAACGCTTCGGCCAGCAGTCCGGCTGCAAACGTTTTCCTTAGGATAAACTCCTTGCGCCTTTACCCTGATGATTGC
ACGCTACAAATGTCATGTGCATTTTTCAGTGACCATGGTATATCTGAATCTTGATTTCATTCT------AAAGAGAAGAA
TTTTTTGTCCAAGCTAGCCATGTAGATTGTGTTTTGCCATAACGTAGAGCAGATGACACTTGACAGCAAGATCGAGAGCA
AGCGCCCCGGAATTCAATCAACTGTTCCATCAGCGGCGATCGCCGGGATGGTAAGCGTGGAATCGTTTCATGTGGCGGGG
AGCTAGC---------------------CGAGCGGCAGTTGACTTGCCGAGACTTGATAGTTGGAAAGCAATGCGTGGTT
CCGACGACACTCGTTTAGTCAGATCATCCCGGGCCATAAAAGAAGGCGTTCCACGCCTTGCACCATCACACCATCACGAT
CGAGCACTCGCAACAGCTTCACTCAACTCGCAGT-GAAGATCACCTAGAGACCGACTAGCAGTGATCGATGGCGTCCGTC
CGGCGCCCGTGCGCGGTGGCGCTGCTCGCCTGCGCCGCCGCATTCCTCGTGACGGTCGGTGCCCAGCCGAAGGACAACCC
CATTTTGTCGGACCCCAACGTGGTCCCCATCTACATGAGCCCCGGCGCGCAGCCCACCGTGGTGAGCTGCTACAACCAGA
GCAGCCCGTCGCAGGCCCCAGAGTGCATGATTCCGGTGCGCCGGTGCCCCGCCGGCTGCCGCGACCTCTGCTACGTGCAC
TGCCCCAGCTGCAAGCTCGTCTGCAGTAAGAACACCACGCACATACACGTCCATGTTTTTTTTTTGCATTCATTTCACAG
TTG--AAGTTGCTGA---------TCGATCGTGTGCTTGGCGCATCATTGGAACCCAACAGTGTGTGAACTGGCCGGCAC
GGAGTGCTACGACCCGCGCTTCGTGGGTGGCGACGGCAACAAGTTCCTCTTCCACGGCCGCAGGGACGCCGACTTCTGCC
TGCTCTCCGACGCCAACCTGCACATCAACGCGCACTTCATCGGCAAGCGCAACGTGAAGG------CGGCGCGTGACTTC
ACATGGGTGCAGGCGCTCGGCATCCGCTTCGGTGGCCACCGCCTCTACCTCGGCGTCAAGAGGACGGTCACCTGGGACAA
CGCCGTCGACCGCCTCGTCATCACCTTCGACGGCGTGCCCGTCGAGCTGGACGCGGCGCCGGCCGCCAGCTGGAGCCCGG
CCTCCGCGCCCGCGCTGTCCGTCTTCCGCATCGGCAAGGCCAACGGCGTGGTGGTGCGCCTCGACGGCCGGTTCCGCATC
GTCGCCAACGCGGTGCCGGTGACTGAGGAGGACTCGAGGGTCCACGACTACGGCCTCACCGCCGA---CGACAGCCTCGC
GCACCTCAACGTCGCATTCAAGTTCAACTCCATCAGCGCCGACGTGCACGGCGTGCTCGGCCAGACCTACCGCCCGGACT
ACGTCAGCGCCGGGGTTGACATGGGCGCCAAGATCCCGGTGATGGGGGGTGCCGCAAAGTACCAGGTGTCGGACATCTTC
GGGACGGACTGCGAGGTGGCGCGCTTCGCCGGAGAGGACGTCGTCCGCGTCGGGGCGGTCGACATGATCGACGAGCCGGC
CGACACCATGTGCGGCAGCGGCAAGGGCAGCGCCGGGCTGGTCTGCAAGAAGTGAAGTACGAGTATTGCGAGCTGATTTT
GCTTCATTACCCTCGTAAGTGTGCCCATACACGTCTACGTGCTCGCTGCTGCTACACCACGTTAT---TGGTA-------
----GTAGCTCCGCATTTGCTTTCCAAATAAATCACCTGCTGGTGATGATGTCGTGTC-TTGTGTGTTAGTCAAACGATC
GTCGTGTAGGGCA------ACGTTGGAAATCCAGGCGTTGCTCGGCGTGC-CAGGCTAGGATAGGATCGGCAGGGCATGA
TCCGAAGATCGAAGTTCATATGCATGTCGAGTCGAGCCCATCTTAGCTGCTTTTTCCCCCTCAATGTATTTTTTCAAATA
TAATGATTGAGCAATCAAGTTTGT--TTTTCATGTTATATTACATGTGTGAGATACAGTTTTCCATTGAGCTA---CATC
GGAA-----------GGTGGATCGGGATTCCTTACCGTGCCTTGAAACAAACGCCACGTACCTGCCAATGTGTCGCCCCT
TTTAGCTCGTCCCTTCCCTTTGCGCGCCACTCAGCTTCATCGGCAATCACAGCTAGCTCCGCCTCCGCGTGATCATATTC
CTTGCGTCGCCTTGCTCCAAGC------------GGCAGAGCTACAGACAGAGGCAGTGCAATATAAACAACGTCATCTC
GCGGATGTCTCTGTGGGCTGCCATAT-CAGGACAGGAGCAGCGATGGCGGGCGGGCAGCCGGAGGAGAGCCAGCAACCGC
AGCTTGTTCGTGTTCGGCGGCAGCGCCCTGGCCACCATGAGCCACCGACGCAACCACCGGCGCCGCGCAAGATAAGGAGA
AAGCGGCGTGGCCGCCGCCTTCGCAGCCTCGTCTTGCTGCTCGGTCTCCTCGCCTTCCTCCTCTACCTGCGGAGGCGCCG
CCGTAGGCGGCGCCGACGGAGTCACGCCGGCGGGCGGGTCGTCGCCATCGTCGCGGAGTAGG-------GCCAAGGCTCC
GTCGCGCGTCAAGGACGATAAGCTGCCGCACAAGATTTTCGTGAGTCATGACGTGCCCGGCCCCGCACCTTGACATTCGA
TTGCGTGCGTTCGTCAATCTGGAGTTCGTGCGCACAAGGATTGGATCGTCCGA---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------CATCCATGGGAATTGATCGGTTCGTATAAATTTCCAGTTTATCTCATCGTGTGCCTTTTTCCT
>chr2A_654
CATAGT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------GCAATTTCTGTCGACCATGCTATATCTGAATCTTGGTTTCTTTCTCTAAGAAATGAGAAGAA
AATTTTGTCCTAGCGGGGCATGTAGATTCTGCTTAGCCATAACGTAGAGCAGATGACACTTGACACAAAGATCGAGACCA
AGCGCCCCGGATTTGAATCAACCGT--------------TCGCCGGGACGGCAAGCGTGGAATCGTTTCATGTGGCGCGC
GG----GGGAGCTAGCCGAGCGATCTATCGAGCGGCAGTTGACTTGCCGGGACTA---------AAAGCCGTGCGTGGTT
CCGACGACACTCGTTTAGTCAGATCATCCCGGGCCATAAAAGAAGGCGTTCCACGCCTTGCACCATCACACCATCACGAT
CGAGCACTCGCAACAGCTTCACTCAACTCGCAGT-GAAGATCACCTAGAGACCGACTAGCAGTGATCGATGGCGTCCGTC
CGGCGCCCGTGCGCGGTGGCGCTGCTCGCCTGCGCCGCCGCATTCCTCGTGACGGTCGGTGCCCAGCCGAAGGACAACCC
CATTTTGTCGGACCCCAACGTGGTCCCCATCTACATGAGCCCCGGCGCGCAGCCCACCGTGGTGAGCTGCTACAACCAGA
GCAGCCCGTCGCAGGCCCCAGAGTGCATGATTCCGGTGCGCCGGTGCCCCGCCGGCTGCCGCGACCTCTGCTACGTGCAC
TGCCCCAGCTGCAAGCTCGTCTGCAGTAAGAACACCACGCACATACACGTCCATGTTTTTTTTTTGCATTCATTTCACAG
TTG--AAGTTGCTGA---------TCGATCGTGTGCTTGGCGCATCATTGGAACCCAACAGTGTGTGAACTGGCCGGCAC
GGAGTGCTACGACCCGCGCTTCGTGGGTGGCGACGGCAACAAGTTCCTCTTCCACGGCCGCAGGGACGCCGACTTCTGCC
TGCTCTCCGACGCCAACCTGCACATCAACGCGCACTTCATCGGCAAGCTCAACGTGAAGG------CGGCGCGTGACTTC
ACATGGGTGCAGGCGCTCGGCGTCCGCTTCGGTGGCCACCGCCTCTACCTCGGCGTCAAGAGGACGGTCACCTGGGACAA
CGCCGTCGACCGCCTCGTCATCACCTTCGACGGCGTGCCCGTCGAGCTGGACGCGGCGCCGGCCGCCAGCTGGAGCCCGG
CCTCCGCGCCCGCGCTGTCCGTCTTCCGCATCGGCGCGGCCAACGGCGTGGTGGTGCGCCTCGACGGCCGGTTCCGCATC
GTCGCCAACGCGGTGCCGGTGACTGAGGAGGACTCGAGGGTCCACGACTACGGCCTCACCGCCGA---CGACAGCCTCGC
GCACCTCAACGTCGCATTCAAGTTCAACTCCATCAGCGCCGACGTGCACGGCGTGCTCGGCCAGACCTACCGCCCGGACT
ACGTCAGCGCCGGGGTTGACATGGGCGCCAAGATCCCGGTGATGGGGGGTGCCGCAAAGTACCAGGTGTCGGACATCTTC
GGGACGGACTGCGAGGTGGCGCGCTTCGCCGGAGAGGACGTCGTCCGCGTCGGGGCGGTCGACATGATCGACGAGCCGGC
CGACACCATGTGCGGCAGCGGCAAGGGCAGCGCCGGGCTGGTCTGCAAGAAGTGATGTG---GTATCGCGAGCTGATTTT
GCTTCGTTACCCTCGTAAGTGTGCCCATACACGTCTACGTGCTCGCTGCTGCTACAC--------------TACATTATC
GGTAGTAGCTCCGCA-----TTTCAGAATAAATAACC-GC---TGGTGATGTCGTGTCGTTGTGTGTTAGTCAATCGATA
GTCGTGTAGGGCA------ACGTTGGAAATCCAGGCGTTGCTCGGTGTAA-CAGGCTA----------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------
>chr2D_656
--------------------------------------------------------------------------------
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---------------TGTGCAATTTTTGGTGGCCAGGCTATATCTGAATCTTGGTTTCTTTCT------GAAGAGGATAA
ATTTTTGTCCTGGCTGGACACGTAGATTCTGCTTAGCCATAACGTAGAGCAGATGACACTTGACACCACGATCGAGACCA
AGCGCCCCGGATTTGAATCAACCGT--------------TCGCTGGGACGGCAAGCGTGGAATCGTTTCATGTGGCGCGC
GG----GGGAGCTAGCCGAGCCATCTATCGAGCGGCAGTTGACTTGCCGGGACTA---------AAAGCCATGCGTGGTT
CCGACGACACAAGTTTAGTCAGATCATCCCGGGCTATAAAAGAATGCGTTCCACGCCTTGCACCATCACACCATCACGA-
---GCACTCGCAACAGCTTCACTCAACTAGCAGT-AAAGATCACCCGGAGACCGACTAGCAGTGATCGATGGCGTCTTTC
CGGCGCCCGTGCGCGGTGGCTCTGCTCGCCTGCGCCGCCGCATTCCTCGTGACGGTCGGTGCCCAGCCGATGGACAACCC
CATTTTGTCCGACCCCAACGTGGTCCCCATCTACATGAGCCCCGGCGCGCAGCCCACCGTGGTGAGCTGCTACAACCAGA
GCAGCCCGTCGCAGGCCCCGCAGTGCATGATCCCGGTGCGCCGGTGCCCCGCCGGCTGCCGCGACCTCTGCTACGTGCAC
TGCCCCAGCTGCAAGCTCGTCTGCAGTAAGAACACCACACACATACACGTCCATGTTTTTT----ACATTCATTTCGCAG
CTG--AAGTTACTGA---------TCGACCGTGTGCTTGATGCATCATTGGAACCCAACAGTGTGTGAACTGGCCGGCAC
GGAGTGCTACGACCCGCGCTTCGTGGGCGGCGACGGCAACAAGTTCCTCTTCCACGGCCGCAGGGACGCCGACTTCTGCC
TGCTCTCCGACACCAACCTGCACATCAACGCGCACTTCATCGGCAAGCGCAACGTGAAGG------CGGCGCGGGACTTC
ACATGGGTGCAGGCGCTCGGCATCCGCTTCGGCGGCCACCGCCTCTACCTCGGCGTCAAGAGGACGGTCACCTGGGATAA
CGCCGTCGACCGCCTCGTCATCACCTTAGATGGTGTGCCCGTCGAGCTGGCCGGGGCGCCGGCCGCCAGCTGGAGCCCGG
CCTCCGCGCCTGCGCTGTCCGTCTTCCGCATCGGCGCGGCCAACGGCGTGGTGGTGCGCCTCGACGGCCAGTTCCGCATC
GTCGCCAACGCGGTGCCGGTGACCGAGGAGGACTCGAGGGTCCACGACTACGGCCTCACCGCCGA---CGACAGCCTCGC
GCACCTCAACGTCGCGTTCAAGTTCAACTCCATCAGCGCCGACGTGCACGGCGTGCTCGGCCAGACCTACCGCCCGGACT
ACGTCAGCGCCGGGGTTGACATGGGCGCCAAGATCCCGGTGATGGGGGGTGCCGGAAAGTACCAGGTGTCGGACATCTTC
GGGACGGACTGCGAGGTGGCGCGCTTCGCCGGAGAGGACGTCGTCCGCGTCGGGGCGGTCGACATGATCGACGAGCCGGC
CGACACCATGTGCGGCAGCGGCAAGGGCAGCGCCGGGCTGGTCTGCAAGAAGTGAAGTG---GTATCGCGAGCTGATTTT
GCTTCATTACCCTCGTAAGTGTGCCCATACACGTCTACGTGCTCGCTGCTGCTATGCTACGTTAT---TGGTA-------
----GTGGCTCCGCATTTGCTTTCCGAATAAATCAGCTGC---TGGTCATGTCGTGTC-TT-TGTGTCAGCCAATCGATC
-TCGTGTAGGGCA------ACGTTGGAAATCCAGGCGTTGCTCAGTGTGC-CAGGCTA----------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------
>chr2D_657
--------------------------------------------------------------------------------
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----------------GTGCAATTTTTGGTGGCCAGGCTATCTCTGAGTCTTGGTTTCTTTCT------GAAGAGGATAA
AATTTTGTCCAAGCTGGGCACGTAGATTCTGTTTAGCCATAACGTAGAGCAGATGACACTTGACACCAAGATCGAGACCA
AGCGCCCCGGATTTGAATCAACCGT--------------TCGCCGGGACGGCAAGCGTGGAATCGTTTCATGTGGCGCGC
GG----GGGAGCTAGCCGAGCCATCTATCGAGCGGCAGTTGACTTGCCGGGACTA---------AAAGCCATGCGTGGTT
CCGACGACACAAGTTTAGTCAGATCATCCCGGGCTATAAAAGAATGCGTTCCACGCCTTGCACCATCACACCATCACGA-
---GCACTCGCAACAGCTTCACTCAACTAGCAGT-AAAGATCACCCAGAGACCGACTAGCAGTGATCGATGGCGTCCGTC
CGGCGCCCGTGCGCGGTGGTGCTGCTCGCCTGCGCCGCCGCATTCCTCGTCACGGTCGGTGCCCAGCCTATGGACAACCC
CATTCTTTCGGACCCCAACGTGGTACCCGTCTACATGAGCCCCGGCGCGCAGCCCACTGTGGTGAGCTGCTACAACCAGA
GCAGCCCGTCGCAGGCCCCAGAGTGCATGATCCCGGTGCGCCGGTGCCCCGCCGGCTGCCGCGACCTCTGCTACGTGCAC
TGCCCCAGCTGCAAGCTCGTCTGCAGTAAGAACACCACACACATACACGTCCATGTTTTTT---TGCAGTCATTTCACAG
TTG--AGGTTGCTGA---------TCGATCGTGTGCTTGGTGCATCATTGGAACCCAACAGTGTGTGAACTGGCCGGCAC
GGAGTGCTACGACCCGCGCTTCGTGGGCGGCGACGGCAACAAGTTCCTCTTCCACGGCCGCAGGGACGCCGACTTCTGCC
TGCTCTCCGACGCCAACCTGCACATCAACGCGCACTTCATCGGCAAGCGCAACGCGCAGGCGGCGCCGGCGCGGGACTTC
ACATGGGTGCAGGCGCTCGGCATCCGCTTCGGCGGCCACCGCCTCTACCTCGGCGTCAAGAGGACGGTCACCTGGGACAA
CGCCGTCGACCGCCTCGCCATCACCTTCGACGGCATGCCTGTCGAGCTGGACGCGGCGCCGGCCGCCAGCTGGAGCCCGG
CCTCCGCGCCCGCGCTGTCCGTCTTACGCATCGGCGCGGCCAACGGCGTGGTGGTGCGCCTCGACGGCCGGTTCCGCATC
GTCGCCAACGCGGTTCCGGTGACCGAGGAGGACTCGAGGGTCCACGACTACGGCCTCACCGCCGA---CGACAGCCTCGC
GCACCTCAACGTCGCGTTCAAGTTCAACTCCATCAGCGCCGACGTGCACGGCGTGCTCGGCCAGACCTACCGCCCGGACT
ACGTCAGCGCCGGGGTTGACATGGGCGCCAAGATCCCGGTGATGGGGGGTGCCGGAAAGTACCAGGTGTCGGACATCTTC
GGGACGGACTGCGAGGTGGCGCGCTTCGGCGGAGAGGACGTCGTCCGCGTCGGGGCGGTGGACATGATCGACGAGCCGGC
CGACACCATGTGCGGCAGCGGCAAGGGCAGCGCCGGGCTGGTCTGCAAGAAGTGAAGTG---ATACCGCGAGCTGATTTT
GCTTCATCACCCTCGTAAGTGTGCCCATACACGTCTACGTGCTCGCTGCTGCTACACCACGTTACTGGTGGTA-------
----GTAGCTCCGCATTTGCTTTCCGAATAAATCACCTGC---TGGTGATGTCGTGTC-TTGTGTGTTAGTCAAACGATC
GTCGTGCAGGGCAACGTTGACGTTGGAAATCCAGGCGTTGCTCGGTGTGC-CAGGCTAC---------------------
---------------------------------------------------TTTTTT-CCT--ATGTA--TTTTCAAATG
TAATGATTGAACAATCAAGCTTGTGATTTTC-----ATGTTACATGCGTGAGATATGGTATTCCATTGAGCTAGTACATC
GGAAAGTTTGGACATGGTGGATCGGGATTCCTTACCCTGCCTTGAAACAAACGCCACGTACCTGCCAATGTGTCGCTCCT
TTTAGCTCGTCCCTTCCATTTGCGCGCCACTCAGCTTCATCGGCAATCACAGCTAGCTCCGCCTCCGCGTGATCGTATTC
CTTGCGTCGCCTTGCTCCAAGC------------GGCAGAGCTACAGACAGAGGCAGTGCAATATAAACAACGTTGTCCC
GCGGATGTCTCTGTGAGCTGCCAATACCAGGACAGGAGCAGCGATGGCGGGCGGGCAGCTGGAGGAGCGCCAGCAACCGC
AGCTTGTTCGGGTTCGGCGTCAGCGCCCAGGCCAACACGAGCCACCGACGCAAGCAA------CGCGCGAGATAAGAAGA
AAGCGGCGTGGCCGCCGCCTTCGCAGCCTCGTCTTGCTGCTCGGTCTCCTCGCCTTCCTCCTCTACCTGCGGAGGCACCG
CCGTAGGCGGCGCCGAGGGAGTCGCGCGGGCGGGCGGGTCCTCGCCATCGTCGCGGAGTAGGGCCAAGCGCCAAGGCTCC
GTCGCGCGTCAAGGACGATAAGCTGCCGC---------------------------------------------------
---------------------------------ACAAGGATTGGATCGTCCGGCGTCCCTTTTTCCTCCAACACTGCTCT
ACGCTCTACGGTGCGTGCACACGGCGTTTCTGCCGGAGGAGCTTTGTTCAATGAGACGCGTATTTTTATGGGTTTAAATT
TCTCTCATGTTGCAGTTTCTTTTTGCTCTCAGACATGTACTCTCTTCATTCCTAAATATAAGTATTTATAGAGATTTCAT
TATGGTCCATCCATGGGAAATGATCGGTTCGTATAAATTTTCAGTTTATCTCATCGTGTGCCTTTTTCCT
>chr2B_657
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------GTGCAATTTTTGGTGGCCAGGCTATATCTGAATCTTGGTTTCTCTCT------GAAGAGGATAA
ATTTTTGTCCTGGCTGGGCATGTAGATTGTGCTTAGCCATAACGTAGAGCAGATGATACTTGACACAAAGATCGAGACCA
AGCGCCCCGGATTTGAATCAACCGT--------------TCGCCGGGACGGTAAGCGTGGAATCGTTTCATGTGGCGGGG
GACTCTGGGAGCTAGCCGAGCCATCTATCGAGCGGCAGTTGACTT-CCGGGACTA---------AAAGCCATGCGTGGTT
CCGACGACACTCGTTTAGTCAGATCGTCCCGGGCTATAAAAGAATGCGTTCCACGCCTTGCACCACCACACCATCACGA-
---GCACTCGCAACAGCTTCACTCAACCAGCAGTGAAAGATCACCCAGAGACCGACTAGCAGTGATCGATGGCGTCCGTC
CGGCGCCCGTGCGCGGTGGTGCTGCTCGCCTGCGCCGCCGCATTCCTCGTCACGGTCGGCGCCCAGCCGATGGACAACCC
CATCCTTTCGGACCCCAACGTGGTACCCGTCTACATGAGCCCCGGCGCGCAGCCCACCGTGGTGAGCTGCTACAACCAGA
GCAGCCCGTCGCAGGCCCCAGAGTGCATGATCCCGGTGCGCCGGTGCCCCGCCGGCTGCCGCGACCTCTGCTACGTGCAC
TGCCCCAGCTGCAAGCTCGTCTGCAGTAAGAACACCACACACATACACGTCCATGTTTTTT----GCATTCATTTCGCAG
TTAGAAAGTTACTGATTGCTCGGCTCGATCGTGTGCTTGATGCATCATTGGAACCCAACAGTGTGTGAACTGGCCGGCAC
GGAGTGCTACGACCCGCGCTTCGTGGGCGGCGACGGCAACAAGTTCCTCTTCCACGGCCGCAGGGACGCCGACTTCTGCC
TGCTCTCCGACGCCAACCTGCACATCAACGCGCACTTCATCGGCAAGCGCAACGTGAAGGCGG------CGCGGGACTTC
ACATGGGTGCAGGCGCTCGGCATCCGCTTCGGCGGCCACCGCCTCTACCTCGGCGTCAAGAGGACGGTCACCTGGGACAA
CGCCGTCGACCGCCTCGCCATCACCTTCGACGGCATGCCTGTCGAGCTGGACGCGGCGCCGGCCGCCAGCTGGAGCCCGG
CCTCCGCGCCCGCGCTGTCCGTCTTACGCATCGGCGCGGCCAACGGCGTGGTGGTGCGCCTCGACGGCCAGTTCCGCATC
GTCGCCAACGCGGTGCCGGTGACCGAGGAGGACTCGAGGATCCACGACTACGGCCTCACCGCCGA---CGACAGCCTCGC
GCACCTCAACGTCGCGTTCAAGTTCCACTCCATCAGCGCCGACGTGCACGGCGTGCTCGGCCAGACCTACCGCTCCGACT
ACGTCAGCGCCGGGGTTGACATGGGCGCCAAGATACCCGTGATGGGGGGTGCCGCAAAGTACCAGGTCTCGGACATCTTC
GGCACGGACTGCGAGGTGGCGCGCTTCGCCGGAGAGGACGTCGTCCGCGTCGGGGCGGTGGACATGATCGACGAGCCGGC
CGACACCATGTGCGGCAGCGGCAAGGGCAGCGCCGGGCTGGTCTGCAAGAAGTGAAGTG---GTACCGCGAGCTGATTTT
GCCTCATTACCCTCGTAAGTGTGCCCATACACGTCTACGTGCTCGCTGCTGCTACAC--------------TA-------
----GTAGCTCCGGATTTGGTTTCAGAATAAATCACC-G--GGTGGTGATGTCGTGTCTTTGTGTGTTAGTCAATCGATC
GTTGTGTAGGGCA------ACGTTGGAAATCCAGGCGTTGCTCGGTGTGTGCAGGCTAGGATAGGATCGGCAGGGCTTGG
TCCGAAGACCAAACCAGATGCAT-------GTCGAGCCAATCTTGGCTACTTTTTTT-CCTCAATGTA--CTTTCGAATA
TAATGATTGAACAATCAAGTTTGT--TTTTCATGTT--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------------------------------------------------------------------
>chr2B_657
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------GTGCAATTTTTGGTGGCCAGGCTATATCTGAATCTTGGTTTCTCTCT------GAAGAGGATAA
ATTTTTGTCCTGGCTGGGCATGTAGATTGTGCTTAGCCATAACGTAGAGCAGATGATACTTGACACAAAGATCGAGACCA
AGCGCCCCGGATTTGAATCAACCGT--------------TCGCCGGGACGGTAAGCGTGGAATCGTTTCATGTGGCGGGG
GACTCTGGGAGCTAGCCGAGCCATCTATCGAGCGGCAGTTGACTT-CCGGGACTA---------AAAGCCATGCGTGGTT
CCGACGACACTCGTTTAGTCAGATCGTCCCGGGCTATAAAAGAATGCGTTCCACGCCTTGCACCACCACACCATCACGA-
---GCACTCGCAACAGCTTCACTCAACCAGCAGTGAAAGATCACCCAGAGACCGACTAGCAGTGATCGATGGCGTCCGTC
CGGCGCCCGTGCGCGGTGGTGCTGCTCGCCTGCGCCGCCGCATTCCTCGTCACGGTCGGCGCCCAGCCGATGGACAACCC
CATCCTTTCGGACCCCAACGTGGTACCCGTCTACATGAGCCCCGGCGCGCAGCCCACCGTGGTGAGCTGCTACAACCAGA
GCAGCCCGTCGCAGGCCCCAGAGTGCATGATCCCGGTGCGCCGGTGCCCCGCCGGCTGCCGCGACCTCTGCTACGTGCAC
TGCCCCAGCTGCAAGCTCGTCTGCAGTAAGAACACCACACACATACACGTCCATGTTTTTT----GCATTCATTTCGCAG
TTAGAAAGTTACTGATTGCTCGGCTCGATCGTGTGCTTGATGCATCATTGGAACCCAACAGTGTGTGAACTGGCCGGCAC
GGAGTGCTACGACCCGCGCTTCGTGGGCGGCGACGGCAACAAGTTCCTCTTCCACGGCCGCAGGGACGCCGACTTCTGCC
TGCTCTCCGACGCCAACCTGCACATCAACGCGCACTTCATCGGCAAGCGCAACGTGAAGGCGG------CGCGGGACTTC
ACATGGGTGCAGGCGCTCGGCATCCGCTTCGGCGGCCACCGCCTCTACCTCGGCGTCAAGAGGACGGTCACCTGGGACAA
CGCCGTCGACCGCCTCGCCATCACCTTCGACGGCATGCCTGTCGAGCTGGACGCGGCGCCGGCCGCCAGCTGGAGCCCGG
CCTCCGCGCCCGCGCTGTCCGTCTTACGCATCGGCGCGGCCAACGGCGTGGTGGTGCGCCTCGACGGCCAGTTCCGCATC
GTCGCCAACGCGGTGCCGGTGACCGAGGAGGACTCGAGGATCCACGACTACGGCCTCACCGCCGA---CGACAGCCTCGC
GCACCTCAACGTCGCGTTCAAGTTCCACTCCATCAGCGCCGACGTGCACGGCGTGCTCGGCCAGACCTACCGCTCCGACT
ACGTCAGCGCCGGGGTTGACATGGGCGCCAAGATACCCGTGATGGGGGGTGCCGCAAAGTACCAGGTCTCGGACATCTTC
GGCACGGACTGCGAGGTGGCGCGCTTCGCCGGAGAGGACGTCGTCCGCGTCGGGGCGGTGGACATGATCGACGAGCCGGC
CGACACCATGTGCGGCAGCGGCAAGGGCAGCGCCGGGCTGGTCTGCAAGAAGTGAAGTG---GTA-------------TT
GCTTCATCACCTTCGTAAGTGTGCCCATACACGTCTACGTGCTCGCTGCTGCTATGCTACCTTAT---TCGTA-------
----GTAGCTCCACATTTGGTTTCCGAATAAATCACCTGC---TGGTGATGTCGTGTCGTTGTGTGTCAACCAATCAATC
GTCGTGTAGGGCA------ACGTTGGAAATCCAGGCGTTGCTCGGTGTGC-TAGGCTA----------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------
>chr3A_1491
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------CGACCCGCGCTTCACCGGCGGCGACGGCAACAACTTCTACTTCCACGGCAAGAAGGACCAGGACTTCTGCA
TCGTCTCCGACGCCGACCTCCACATCAACGCCCACTTCATCGGCAAGCGCAACCCCTCCATGAGC------CGCGACTTC
ACCTGGATCCAGGCCCTCGGCATCCGCTTCGCCCACCACCGTCTCTTCATGGGAGCCCTCAAGACCACCAGCTGGAACGG
CGACGTCGACCACCTCGAGATGTCCTTCGACGACGCGGCCATCGAGATCCCGGCCGAGGCCGGCGCGCGGTGGCAGTCGG
CCGCCGTGCCAGGGCTGACCCTCACGAGGACTGCGGCCACCAACGGAGTGAGGGTGCACCTGAGGGGCGTGTTCGACATC
ATGGCCAACGTGGTGCCCATCACCGAGGAGGACTCGCGCATCCACAACTACGGCGTCGCGGGGTCGGGCGACAGCCTCGC
GCACCTTGACATCGGGTTCAAGTTCCATGACCTCACCGACGACGTGCACGGCGTGCTCGGCCAGACCTACCGCTCCGACT
ACGT----------------------------------------------------------------------------
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>chr3D_1492
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----------GACCCGCGCTTCACCGGCGGCGACGGCAACAACTTCTACTTCCACGGCAAGAAGGACCAGGACTTCTGCA
TCGTCTCCGACGCCGACCTCCACATCAACGCCCACTTCATCGGCAAGCGCAACCCCTCCATGAGC------CGCGACTTC
ACCTGGATCCAGGCCCTCGGCATCCGCTTCGCCCACCACCGTCTCTTCATGGGAGCCAAGAATACCACCAGCTGGAACGG
CGACGTCGACCACCTCGAGATGTCCTTCGACGACGCGGCCATCGAGATCCCGATCGAGGTCGGCGCACGGTGGCAGTCGG
CCGCGGTGCCAGGGCTGACCGTCACGAGGACCGCGGCCACCAACGGAGTGAGGGTGCACCTGAGGGGCGTGTTCGACATC
ATGGCCAACGTGGTGCCGATCACCGAGGAGGACTCGCGCATCCACAACTATGGCGTCGCGGGGTCGGGCGACAGCCTCGC
GCACCTCGACATCGGGTTCAAGTTCCACGACCTCACCGACGACGTGCACGGCGTGCTCGGCCAGACCTACCGCTCCGACT
ACGT----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>chr3B_1492
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----------GACCCGCGCTTCACCGGCGGCGACGGCAACAACTTCTACTTCCACGGCAAGAAGGACCAGGACTTCTGCA
TCGTCTCCGACGCCGACCTCCACATCAACGCCCACTTCATCGGCAAGCGCAACCCCTCCATGAGC------CGCGACTTC
ACCTGGATCCAGGCCCTCGGCATCCGCTTCGCGCACCACCGTCTCTTCATGGGAGCCCAGAAGACCACCAGCTGGAACGG
CGACGTTGATCACCTCGAGATGTCCTTCGACGATGCGGCCATCGAGATCCCGATCGAGGCCGGCGCACGGTGGCAGTCGG
CCGCGGTTCCAGGGCTGACCGTCACGAGGACGGCGGCGACCAACGGAGTGAGGGTGCACCTGAGGGGCGTGTTCGACATC
ATGGCCAACGTGGTGCCCATCACCGAGGAGGACTCGCGCATCCACAACTACGGCGTCGCTGGGTCAGGAGACAGCCTCGC
GCACCTCGACATTGGGTTCAAGTTCCACGACCTCACCGACGACGTGCACGGCGTGCTCGGCCAGACCTACCGCTCCGACT
ACGT----------------------------------------------------------------------------
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----------------------------------------------------------------------
>chr2B_2589
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------------------GTTTGT--TTTTC-----ATGTTACATGTATGAGATACAGTATTCCATTGAGCTA---CATC
GGAAAGTTTGGACA---TGGATCACGATTCCTTACCGTGCCTTGAAACAAACGCCATGTAGCTGCCAACGTCTCGCGCCT
TTTAGCTTC----------------------------CATTGCCGATCACAGTTAG------CTCCGCGTGATCATATTC
CTTGCGTTGCCTTGCTCCAAGCGGAGCACAGCGCGGCAGAGCTACAGACAGAGGCAGTGCAATATAAACAACGTCGTCTT
GCGGATGTC-----------------------CAGGAGCAGCGATGGTGGGCGGGCAGCTGGAGGAGGGCCAGCAACCGC
AGCTTGTTCGGGTTCGGCGTCAGCGCCCAGGCCAACACGAGCCACCGACGCAAGCAA------CGCGCGAGATAAGAAGA
AAGCGGCGTGGCCGCCGCCTTCGCAGCCTCGTCTTGCTGCTCGGTCTCCTCGCCTTCCTCCTCTACCTGCGGAGGCACCG
CCGTAGGCGGCGCCGAGGGAGTCGCGCCGGCGGGCGGGTCCTCGCCATCGTCGCGGAGTAGGGCCAAGCGCCAAGGCTCC
GTCGCGCGTCAAGGACGATAAGCTGCC-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
>SNPs
SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS------S----SS---------S---------------S----S---------------------
S--------------S-S----------------S------------------------------S-----------S--
-----------S--S-------S--SSSSSSSSSSSSSS---------S-------------------------------
S---SSS------------------------------------------S----SSSSSSSSSS-----S----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------SS-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------SSSS----S-------------
--------------------------------------------------------------------------------
-------------------------S--------------S----S----------------------------------
---------------------------------------------S------------------------------S--S
--------S-S--SSSS--SSSSSSSSSSS--------S-----S---S------SSS----------SS----------
----------S---------------------------S--------------------S--------------------
----------------------------------------------------------------------------S---
-----------------S--------------------------------------------------------------
---------------------------------------------------------------------------S----
---------------S-------SSS---------------------------------S-------S------------
----------S--------S--------S-----S--S---------------S--SSSSSSS-----S-------S---
----------------------------------------------------------------------------S---
----------------S------S----------------S---------------------------------------
-----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------S---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------S--------------------S-----------------------------
>forward_285
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------CGATCGTTGGGGATCAGGAG-----------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------
>reverse_2307
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------TGCGAGCTGATTTT
GCTTCA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
>forward_529
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------TGCTATTGCTGGCCACATGA-------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
>reverse_2588
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------CGAGTCGAGCCCATCTTAGC---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
