>input_sequence_53281
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------------A
TGGGCGACGCCGGCCAGTCCCACCATCACCACGGCCTCCACACGCAGCTCCTGTCTTTCGGAGGCGCCG---------AC
CATCACATGCATCAGTTCACGGCGCAGGCACAGCCGCCCGCGGCGTCCCAGACGCGGGCGCGAGGAGGACGAGGCGGCGA
GATGGTGCCGGCGGCGACGCCCGCGCGGGTGAGGGGCGGCGGAGGCGGGGAGATCGTGGCGGTGCAGGGAGGGCACATTG
TGCGCTCCACCGGGCGGAAGGACCGGCACAGTAAGGTCTGCACGGCGCGCGGGCCTCGCGACCGCCGCGTGCGGCTGTCG
GCACACACGGCCATCCAGTTCTACGACGTGCAAGACCGGCTGGGCTACGACCGCCCCAGCAAGGCCGTCGATTGGCTCAT
CAAGAACGCCAAGGACGCCATCGACAACCTCGACACCCTTCCCGCTTGGCAGCCCACGGCCGTCGCCCCCTCCGCCAGCA
ATGCCGCCGCGCCGCCGTCCTCCTCCACCCAACCTGACTCCGCCGACAACTCGGACGACCAGGCGCAGGCCATCACCATC
GCGCACTCGTCGTTCGACTTCGCCGGCTCTGGCGGCGCCGGAGGAGCCACGGGCGGCATCAGCTTCCTCCCGCCGTCGCT
CGACTCGGACTCCATCGCCGACACGATCAAGTCCTTCTTCCCCATGGGCGGGACCGCGGGCGGGGAGCCGTCGTCGTCCA
CTGTGGCTGCCCACTCGTCGGCCATGGGTTTTCAAGGCTACACACCGGACCTCTTGTCGCGAACCGGCAGCCAGAGCCAA
GAACTCCGGCTGTCACTGCAGCCTCTACCAGACCCTATGTTTCACCACCACCACCACCAGCAGCAGCAGCAGCAGGAGCA
GCACCGGTCGCATGGCCACGACGGCAACGGCACCGGCCAGCAGGCACTATTCCCCGGTGCGGCCAGCTACTCATTCGGCG
GTGGCGGCGCCATGTGGGGCGAGCAGGCGGCGAGCCAGCGCATGATGCCGTGGAACGTGGCCGACCCAGGCGGCGGGAGC
ACCGGCGGCTACCTGTTCAACGTGTCGCAGCAGGCGGCGCATATGCAGGCGGCGCTGAGCGGCCAGAGCCAGTTCTTCTT
CCAGAGGGGACCCCTTCAGTCCAGTAACCAGCCCTCCGACCGAGGATGGCCGGAGACCGTCGAAGCTGACGACAACCACC
CGATGCAGCAGCAGCAGCAGCAGCACCAAGGGGGCTTGAACCCCTCCGTGTCGGCCATCGGGTTCGGCCCCGGCGTCAGC
TTCTCCGGATTCCGCGTCCCCGCGAGGATGCAGGGCAACGAGGAGCACAACGGCGGCAATGGCGACAAGCCGCCGTCCGT
CTCCTCGGCTTCCCACCACTGA----------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------
>chr3A_1_TraesCS3A01G140100
TCACCACATGAACACATCATGTCTCTACCGT--TTTTCCAAAACTAGAAAAGTAACCGGCTACACATGCAAAACCTGCGC
GCTCAACTGGAGCAGCAGCCCCCATGTTGGCTCTCAATCACTCCTTGGG-------CTCCAGCCAGCAGCCCTCGCTCGG
CTCAGCTTGGGA--------------G-AGCAAGCAAGCAAGCAGTCCCTCTC-----CTCCCTGAAAAAAA-GCTGTCT
CTTTTCTGCCCTGCGCCTACACGCATACGCAGATTGACAGCGGCAGCGGCAGCAGCAAGGAGAGAAACAGACTCTCTCTC
CTCACTAAATCCCAAATCCTGCTCTTATCATCCTGTTTTCCTGCCTCCCTTCTGCTGCTGCTGCCTCCTGCTCTCCAAAG
CTCCCACACACATACACCCAGCCCAAGAGGAGAGAGAGAGTGAGTGAGAGAGAGAAGCCAGCAGCAGCGAAGGCTTTTGC
CTCCCT-CCCCCCCGCCGCCGTCCCCCCTGCTAAAATGTGATGTCCAATCCATCAGATTGCTTCTAGTTCAGTCCCCCAC
TCCTCTCCTGGGTCAGTCCCTTGCCCACCGCTGTTCCCCCTC--------ATGCACCCTCCTCCGCCTTCTTCCTCCTCT
TCTTGATTCTTCTCATGGTTTTTCCTGCTTCTTTTTCCTCCTAGTTATGGGATCCGGCGAGCTGGATGGACGCGCATTGG
AGCAGCACCAGTAGCGGGGGCGAAGCTGCAGCCGGGGGATCTGGATCCGAGGCACCACCACCGGGGCCCTCACGGAGGCG
ACGGCGCAGGAGGAAGAGGAGGTGGAGGTGGAGGTGGCGGCGGCGGGCAGCAGGAGGCTGCAAATGAGGAGCAGCAGCAG
CAGCAACAACAGCACCACCACTACCGGCTGCTGCAGCTGCACCAAGAAGTGCAGCAGGACCAAGAGCCTCCGCCCGCCCC
CGTCTTCCAGCTCTCGCACCTGCAGGCCGCGTCCGTGAGGCAGCCGGGCTCGTCCGCCGAGTATGCCCTTCTCGCGCCCA
TGGGCGACGCCGGCCAGTCCCACCATCACCACGGCCTCCACACGCAGCTCCTGTCTTTCGGAGGCGCCG---------AC
CATCACATGCATCAGTTCACGGCGCAGGCACAGCCGCCCGCGGCGTCCCAGACGCGGGCGCGAGGAGGACGAGGCGGCGA
GATGGTGCCGGCGGCGACGCCCGCGCGGGTGAGGGGCGGCGGAGGCGGGGAGATCGTGGCGGTGCAGGGAGGGCACATTG
TGCGCTCCACCGGGCGGAAGGACCGGCACAGTAAGGTCTGCACGGCGCGCGGGCCTCGCGACCGCCGCGTGCGGCTGTCG
GCACACACGGCCATCCAGTTCTACGACGTGCAAGACCGGCTGGGCTACGACCGCCCCAGCAAGGCCGTCGATTGGCTCAT
CAAGAACGCCAAGGACGCCATCGACAACCTCGACACCCTTCCCGCTTGGCAGCCCACGGCCGTCGCCCCCTCCGCCAGCA
ATGCCGCCGCGCCGCCGTCCTCCTCCACCCAACCTGACTCCGCCGACAACTCGGACGACCAGGCGCAGGCCATCACCATC
GCGCACTCGTCGTTCGACTTCGCCGGCTCTGGCGGCGCCGGAGGAGCCACGGGCGGCATCAGCTTCCTCCCGCCGTCGCT
CGACTCGGACTCCATCGCCGACACGATCAAGTCCTTCTTCCCCATGGGCGGGACCGCGGGCGGGGAGCCGTCGTCGTCCA
CTGTGGCTGCCCACTCGTCGGCCATGGGTTTTCAAGGCTACACACCGGACCTCTTGTCGCGAACCGGCAGCCAGAGCCAA
GAACTCCGGCTGTCACTGCAGCCTCTACCAGACCCTATGTTTCACCACCACCACCACCAGCAGCAGCAGCAGCAGGAGCA
GCACCGGTCGCATGGCCACGACGGCAACGGCACCGGCCAGCAGGCACTATTCCCCGGTGCGGCCAGCTACTCATTCGGCG
GTGGCGGCGCCATGTGGGGCGAGCAGGCGGCGAGCCAGCGCATGATGCCGTGGAACGTGGCCGACCCAGGCGGCGGGAGC
ACCGGCGGCTACCTGTTCAACGTGTCGCAGCAGGCGGCGCATATGCAGGCGGCGCTGAGCGGCCAGAGCCAGTTCTTCTT
CCAGAGGGGACCCCTTCAGTCCAGTAACCAGCCCTCCGACCGAGGATGGCCGGAGACCGTCGAAGCTGACGACAACCACC
CGATGCAGCAGCAGCAGCAGCAGCACCAAGGGGGCTTGAACCCCTCCGTGTCGGCCATCGGGTTCGGCCCCGGCGTCAGC
TTCTCCGGATTCCGCGTCCCCGCGAGGATGCAGGGCAACGAGGAGCACAACGGCGGCAATGGCGACAAGCCGCCGTCCGT
CTCCTCGGCTTCCCACCACTGACAGCAGCAGTGGACGACAGATGACTTCACCACCAACCAACCTCCACAGTGTACCAGTA
ACGACATGAGCCAGCCATCAGCTCCTCCACTTGCATCACTGTGAGAATC----CTAATGGCCTGACTGACTTGTACAGTC
GCAGTACTATAATTCTGCCTGTTCTCCATTACTGCATTGCCGTCGACCCTTTCTTGAACTGCA-----------------
----TCATCCTCTTGCAGGCCGGCGCTAGTTTGATTCCACTTCTTCACACAGTAGGAGCGGGCGATTGCAAGT-AGCTAG
GAGGAGCAAAATCTTCACACGAGTCGGCGATTGCAACTCTACGTTTGGTTGGTTGGTCGATTGGGTTTCCATCTCTTGTG
CTGCGCGTGTCATTGGTTTTTGCTTCAAGATCACTCGGAGCTTCTTAGGCT-----TTGTGAGAGTGCAGCGACATAGCT
AGCTGGTT----AGCCAGCCAGCCAGCCTCTGTGTTGCGTTGCATTAGGTGTAGTTGATGCTGTAGGTCACGCTTAAT--
-------TTGCTTTCTTTCTTTCACTTGTTGATGTATGCATGGATGCTTTGCTTCGCCCTGTGGGTTCAGGACCCGGGAG
AAGCAACGGTGCTACTACCTTAGATGTTGTTGTTGTCAAACTTATAAATGGATGATGGATGGGGAGAGGAGTCTATCACT
CCATCTCCATCTTTCCATCCTTTTTGGTCACAGCATCATCTTTCCAT--------CTTTCTTTCTTTACTGTCACTACTA
TAAGCAGATGTTGATTGGTGCCTGTCGTGGAGTATCTT-CCCTTGACATCTTTTTATGTTTATATTA----T-ATGCTGT
GCAACCGAATCCAACCTTGTTATTTCTATCCAGCCTCTCTTGTTTTTAAAGACCTGTTTGGACCTGGGAAAGAACTTGCT
CAAAACAACCAGAAGGGATGGATTTAATGCAAACTTTTAAGCTTCAAAAATACA-----ACAACCGCAAGCTCCCATGGC
TGTGGCTTGGATGGCCTCAGGCTATAGTTCGCTACAGTACATCCA
>chr3D_1
TCACCACATGAACACATCATCATGTCTATACCGTTTTCCCAAATTAGAAAAGTAACCAGCTACACATGCAAAACCTGCAC
ACTCAACTGGAGCAGCACCCCCCAAATTGGCTTTCCC----------GGCTCCAGCCTCCTGCCAGCAGCCCTCACTCGG
CTCAGCTCGGATGTTCCCACACCGCTG-AGCAAGCAAGCAAGCAGTCTCTCTC-----CTCTCTAAAAAAAAGGCTCTCT
CTTTTCTGCCCTGCGCCTACACGCATACGCACATTGACAGGG--AGCGGCAGCAGCAAGGAGTGAAACAAACTCTCTCTC
CTCACTAAATCCCAAATCCTGCTCTTATCATCCTGTTTTCCTGCCTCCCTT------CTGCTGCCTCCTGCTCTCCAAAG
CTCCCACACCACA--------CCCAAGAGGAGAGAGGAAGC--------------------CAGCAGCAAAAGCTTTTGC
CTCCCTCCCCCCCCGCCGCCGTCCCCCCTGCTAAAATGTGATGTCCAATCCATCAGATTGCTTCTAGTTCAGTCCCCCAC
TCCTCTCCTGGGTCAGTCCCTTGCCCACCGCTGTTCCCCCTCCCTCCCTCATGCACCCTCCGC-----------------
-CTTGATTCTTCTCATGGTTTTTCCTGCTGCTTTTTCCTCCTAGTTATGGGATCCGGCGAGCTGGATGGACGCGCATTGG
AGCAGCAGCAGTAGCGGGGGCGAAGCTGCAGACGGGGGATCTGGATCCGAGGCACCACCACCGGGGTCCTCACGGAGGCG
ACGGCGCAGGAGGAAGAGGAGGTGGAGGTGGAGGTGGCGGCGGCGGGCAGCAGGAGGCTGCGGATGAGGAGCAGCAGCAG
CAGCAGCAACAGCACCACCACTACCGGCTGCTGCAGCTGCACCAACAAGTGCAGCAGGACCAAGAACCTCCGCCCGCCCC
CGTCTTCCAGCTCTCGCACCTCCAGGCCACGTCCGTGAGGCAACCGGGCTCGTCCGCCGAGTATGCCCTTCTCGCGCCCA
TGGGCGATGCCGGCCAGTCCCATCATCACCACGGGCTCCAGACGCAGCTCCTGTCTTTCGGAGGCGCCGGGAGCCACCAC
CATCACATGCATCAATTCACGGCGCAGGCGCAGGCGCCCGCGGCATCCCAGACGCGGGCGCGAGGAGGACGAGGCGGCGA
GATGGTGC---CGGCGACGCCTGCGCGGGTGAGGGGCGGCGGAGGCGGGGAGATCGTGGCAGTGCAGGGAGGGCACATTG
TGCGCTCCACGGGGCGGAAAGACCGGCACAGCAAGGTCTGCACGGCGCGCGGGCCTCGCGACCGGCGCGTCCGGCTGTCG
GCACACACGGCCATCCAGTTCTACGACGTGCAAGACCGGCTGGGCTACGACCGCCCCAGCAAGGCCGTCGATTGGCTCAT
CAAGAACGCCAAGGACGCCATCGACAACCTCGACACCCTTCCGGCTTGGCAGCCCACGGCCGTCGCCCCTGCCTCCAGCA
ATGCCGCCGCGCCGCCGTCCTCCTCGACCCAGCCTGACTCCGCCGACAACTCAGACGACCAGGCGCAGGCCATCACCATC
GCGCACTCGTCCTTCGACTTCGCCGGCTCTGGTGGCGCTGGAGGAGCCACGGGCGGCATCAGCTTCCTCCCGCCGTCGCT
CGACTCGGACTCCATCGCGGACACGATCAAGTCGTTCTTCCCCATGGGCGGGACCGCAGGCGGGGAGCCGTCGTCGTCCA
CTGTGGCTGCGCACTCGTCGGCCATGGGTTTTCAAGGCTACACACCGGACCTCCTGTCGCGAACCGGCAGCCAGAGCCAA
GAACTCCGGCTGTCGCTGCAGCCTTTACCAGACCCCATGTTTCACCACCACCACC------------ACCAGCAGGAGCA
GCACCGGCCGGATGGCCACGACGGCAACGGCACCGCCCAGCAGACACTATTCCCCGGCGCGGCCAGTTACTCATTTGGCG
GCGGCGGCGCCATGTGGGCCGAGCAGGCGGCGAGCCAGCGCATGATGCCGTGGAACGTGCCCGACCCAGGCGGCGGGAGC
ACTGGCGGCTACTTGTTCAACGTGTCGCAGCAGGCGGCGCATATGCAAGCGGCGCTGAGTGGCCAGAGCCAGTTCTTCTT
CCAGAGGGGTCCCCTTCAGTCCAGTAACCAGCCCTCCGACCGAGGATGGCCGGAGACCGTCGAAGCTGACGACAACAACC
CGATGCAGCA---GCAGCAGCAGCACCAAGGGGGCTTGAACCCTTCCGTGTCGGCAATCGGGTTCGGTCCCGGCGTCAGC
TTCTCCGGATTCCGCGTCCCCGCGAGGATGCAGGGCAACGAGGAGCACAACGGCGGCAATGGCGACAAGCCGCCGTCCGT
CTCCTCGGCTTCCCACCACTGACAGCAGCAGTGGATGACAGATGACTTCACC----ACCAACCTCCACAGTGTACCAGCA
ACGACATCG----GCCATCAGCTCCTCCACTTGCATCACTGTGAGAATTCTTACTTATGTCCTAACTGACTTGTACTGTT
---GTACTATAATTCTGCCTGTTCTCCATTACTGCATTGCCGTCGACCCTTCCTTGAACGCGCGATTCC----TGATTGG
TTCTTCATCCTCTTGCAGG---GTGCTAATTTGATTCCGCTTCATCATTTA-TAGGAGCTGGTGATTGCATTGCAACTAG
GAGGAGCGAAATTCGGAGCTGGT--------------TCTACGTCTGGTTGGTTGGTTGGTTGGTTTTCCATCTCTTCTG
CTACGTGTGTCATTGTCTTTTGCTTCAAGATCACTCGGAGCTTCTTAGAATTAGGCTTGTGAGAGTGCAGCGACACAGCA
AGCTGGTG----AGCCAGCC--------TCTTTGTGGCATTGCATTAGGTGTAGTTGATGTTGTAGTTTGCTGTAGGTCA
AGCTCGATTGCTTTCTTTCTTTCACTTGTTGCTGTATGCTACTACTAGA-------------------------------
---------------------------TGTTATTCTCAAACTTATAAATGGATGTTGGATGGGGAGAGGAGTCTATCACT
CCATCTTTATCTTTCCATCCTTTTTGGTCACAACATCATCTTTCCATTGTTCGCTCTTCCTTTCTTTACTGTCACTACTA
TAAGCAGATGTTGATTGGTGCCTGTCGTGGAGTATCTT-CCCTTAACATCTTTTGTTTATTCATATTACATT-ATGCCGT
GCAACCAAATCCAAGCTTCTTATTTTTATCCATTCTCTCTT--TTTAAAAGACTTGT-TGGAGCTGAGAAAGAACTTGCT
CAAAACAACCAAAAGGGATTTATTTAATGCAAACTTTTAAGCTTCAAAAATACTCCTATACAACCGCAAGCTCGCATGGC
A-TGGATGGGATGGCCTCACTCTATAGTTCACTACAGTACATCCA
>chr3B_1
TCACCACATGAACACATCATCATGTCTATACCATTTTCCCAAATTAGAAAAGTAACCAGCTACACATGCAAAACCTGCAC
GCCCAACTGGAGCAGCACCCCCCAAATTGGCTTTCAATCACTGCTTGGGCTCCAGCCTCCTGCCAGCAGCCCTCGCTCGG
CTCAGCTCGGATGTTCCCAAGCTGAGCAAGCAAGCAAGCAAGCGGTCTCTCTCTCTCTCTCTCTAAAAAAAAAGCTCTCT
CTTTTCTGCCCTGCACCTAC----------------ACAGGG--AGCGGCAGCAGCAAGGAGTGAAACAAACTCTCTCTC
CTCACTAAATCCCAAATCCTGCTCTTATCATCCTGTTTTCCTGCCTCCCTT---CTGCTGCTGCCTCCTGCTCTCCAAAG
CTCCCACACCACA--------CCCAAGAGGAGAGAGGAAGC--------------------CAGCAGCAAAAGCTTTTGC
CTCCCTCCCC-CCCGCCGCCGTCCCCCCTGCTAAAATGTGATGTCCAATCCATCAGATTGCTTCTAGTTCAGTCCCCCAC
TCCTCTCCTGGGTCAGTCCCTTGCCCACCGCTGTTCCCCCTCCCTCCCTCA----CCCTCCGC-----------------
-CTTGATTCTTCTCATGGTTTTTCCTGCTTCTTTTTCCTCCTAGTTATGGGATCCGGCGAGCTGGATGGACGCGCATTGG
A---GCAGCAGTAGCGGAGGCGAAGCTGCAGCCGGGGGATCTGGATCCGAGGCACCACCACCGGGGTCTTCACGGAGGCG
ACGGCGCAGGAGGAGGAGGAGGAGGC---------GGCGGCGGCGGGCAGCGGGAGGCTGCAGATGAGGAGCAG------
---------CAGCACCACCACTACCGGCTGCTGCAGCTCCACCAAGAAGTGCAGCAGGACCAAGAACCTCCGCCCGCCCC
CGTCTTCCAGCTCTCGCACCTGCAGGCCGCGTCCGTGAGGCAGCCGGGCTCGTCCGCCGAGTATGCCCTTCTCGCGCCCA
TGGGCGACGCCGGCCAGTCCCATCATCACCACGGGCTCCAGACGCAGCTCCTGTCTTTCGGAGGCGCCGGGAGCCACCAC
CATCACATGCATCAGTTCACGGCGCAGGCGCAGCCGCCCGCGGCATCCCAGACGCGGGCGCGAGGAGGACGAGGCGGCGA
GATGGTGC---CGGCTACGCCTGCGCGGGTGAGGGGCGGCGGAGGCGGGGAGATCGTGGCAGTGCAGGGAGGGCACATTG
TGCGCTCCACGGGGCGGAAAGACCGGCACAGCAAGGTCTGCACGGCGCGCGGGCCTCGCGACCGGCGTGTTCGGCTGTCG
GCACACACGGCCATCCAGTTCTACGACGTGCAAGACCGGCTAGGCTACGACCGCCCCAGCAAGGCCGTCGATTGGCTCAT
CAAGAACGCCAAGGACGCCATCGACAACCTCGACACCCTTCCCGCTTGGCAGCCCACGGCCGTCGCCCCTGCCGCCAGCA
ATGCCGCCGCGCCGCCGTCCTCCTCGACCCAGCCTGACTCCGCCGACAACTCGGACGACCAGGCGCAGGCCATCACCATC
GCGCACTCGTCGTTCGACTTCGCCGGCTCTGGTGGCGCTGGAGGAGCCACGGGCGGCATCAGCTTCCTCCCGCCGTCGCT
CGACTCGGACTCCATCGCGGACACGATCAAGTCGTTCTTCCCCATGGGCGGGACCACAGGTGGGGAGCCGTCGTCGTCCA
CTGTGGCTGCGCACTCGTCGGCCATGGGTTTTCAAGGCTACACGCCGGACCTCCTGTCCCGAACCGGAAGCCAGAGCCAA
GAACTCCGACTGTCGCTGCAGCCGTTACCAGACCCTATGTTTC---ACCACCACC------------AGCAGCAGGAGCA
GCACCGGTCGGATGGCCACGACGGCAACGGCACCGCCCAGCAGACACTATTCCCCGGCGCGGCCAGTTACTCATTTGGCG
GTGGCGGCGCCATGTGGGGCGAGCAGGCGGCGAGCCAGCGCATGATGCCGTGGAACGTGCCCGACCCAGGCGGCGGGAGC
ACTGGCGGCTACCTGTTCAACGTGTCGCAGCAGGCGGCGCATATGCAGGCGGCGCTGAGCGGCCAGAGCCAGTTCTTCTT
CCAGAGGGGACCCCTTCAGTCCAGTAACCAGCCCTCCGACCGAGGATGGCCGGAGACCGTCGAAGCTGACGACAACAACC
CGATGCAGCAGCA------------CCAAGGGGGCCTCAACCCTTCCGTGTCGGCAATCGGGTTCGGTCCCGGCGTCAGC
TTCTCCGGATTCCGCGTCCCCGCGAGGATGCAGGGCAACGAGGAGCACAACGGCGGCAATGGCGACAAGCCGCCGTCCGT
CTCCTCGGCTTCCCACCACTGACAGCAGCAGTGGATGACAGATGACTTCACC----ACCAACCTCCACAGTGTACCAGTA
ACGACATCG----GCCATCAGCTCCTCCACTTGCATCACTGTGAGAATTCTTACT-ATGTCCTAACTGACTTGTACTGTT
---GTACTATAATTCTGCCTGTTCTCCATTACTGCATTGCCGTCGACCCTTACTTGAACGCGATTCCTGATTGTGATTGG
TTCTTCATCCTCTTGCAGG---GTTCTAATTTGATTCTGCTTCATCATTCA-TAGGAGCTGGCGATTGCATTGCAACTAG
GAGGAGCAAAATCAGGAACTGGT--------------TCTATGTCTGGTTGGTTGGTTGGTTGGTTTTCCATCTCTTCTG
CTACGTGTGTCATTGGCTTTTGCTTCAAGATCACCCGGAGCTTCTTAGAATTAGGCTTGTGAGAGTGCAGCGGCATAGCT
AGCTGGTCAGTCAGCCAGCC--------TCTTTGTGGCATTGCATTAGGTGTAGTTGATGCTGTAGTTTGCTGTAGGTCA
AGCTCGATTGCTTTCTTTCTTTCACTTGTTGCTGTATGCTACTACTAGA-------------------------------
---------------------------TGTTGTTCTCAAACTTATAAATGGGTGATGGATGGGGAGAGGAGTCTATCACT
CCATCTTCATCTTTCCATCCTTTTTGGTCACAGCATCATCTTTCCATT--------TTTCTTTCTTTACTGTCACTACTA
TAAGCTGATGTTGATTGGTGCCTGTCGTGGAGTATCTTTCCCTTAACATCTTTTTTA-TTTATATTA----TTATGCTTT
GGAACCAAATCCAACCTTGTTATTTCTATCCAGTCTCTCTTGTTTTTAAAGACTTGTTAGGAGCTGAGAAAGAACTTGCT
CAAGGCAACCAAAAGGGTTGGATTTAATGCAAACTTTTAAGCTTCAAAAATACT-----ACAACCGCAAGCTCCCATGGC
AATGGATGAGATGGCCTCAGGCTATAGTTCACTACAGTACATCCA
>SNPs
--------------------SSSSSSSSSSS--------S---S-------------S--------------------S-
-----------------S------SS------S---------S-----------------S-------------------
-------S--SS-----------------------------------S-------------S--S-----------S---
-------------------------------S--------S-SS------------------S------S----------
---------------------------------------------------SSS--------------------------
---------SSSSSSSSSSSS---------------SS--SSSSSSSSSSSSSSSSSSSSS-------S--S--------
--------------------------------------------------------------------------------
-------------------------------------------------------------S-SSSSSSSSSSSSSSSSS
S-------------------------------------------------------------------------------
-------S----------------------------------------------------------S-------------
--------------------------------------------------------------S-----------------
-----S-----------------------------------------------------------S--------------
--------------------------------------------------------------------------------
----------------------S-----------S-----S---------------------------------------
-----------------------------S--------------S-----------------------------------
--------SSS----------S--------------------------------------S-------------------
----------S--------S-----------S--------------------------------S-----S---------
--------------------------------------------------------------------------------
---------------------------------------------------------------------SS---------
-------------------------S-----S------------------------------------------------
--------------------------------S-----S-----------------------------------------
------------------S--------------S-----------------------S----------------------
----------S------------------------------------------S--------------------------
--------------S---------S------------------------------SSSSSSSSSSSS-------------
----------S------------------------S-------S-------------S--------S--------S----
-----------------------------------------------------------S--------------------
--S-----------------------------------------------------------------------------
----------------------------------------------------------------------------S---
-------------------------------------------S-----------S-----------S------------
--------------------------------------------------------------------------------
-----------------------------------S----------------SSSS------------------------
-------SSSSSS-----------------------------------S------S---S---S------------S--S
SSS------------------------------------------------S-------SSS------------------
-------------------SSS-S----S---------S----S---SS--S-------S----------SSS--S----
-------------SSS-SSS-SSSSSSSSSSSSSSSS-------S------------S-S----S------------S--
--S--S----------S-------------------------------SS------------------------------
-------S------------SSSSSSSS---S---S--S---------------------------S-SS-SS-SSS---
-------------------------------S-------SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS-------S---------------------------------------------
------S-------------------------------------------------------------------------
--------------------------------------------S----------S-S----------------------
------S--------------------------S-------------------S--------S---S-------------
-----------S-----------------------------------------S--------------------------
SS---S-S----------------------S--------------
>forward_281
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------CGCATACGCAGATTGACAGC---------------------------------------
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---------------------------------------------
>reverse_1300
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------GGACCGGCACAGTAAGGTC------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------
>forward_411
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------TCTCCAAAG
CTCCCACACAC---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------
>reverse_1978
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------TGCGGCCAGCTACTCATTC----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------
>forward_412
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------CTCCAAAG
CTCCCACACACA--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------
>reverse_1987
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------CTACTCATTCGGCG
GTGGC---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------
>forward_946
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------AAGTGCAGCAGGACCAAGAG--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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>reverse_2453
--------------------------------------------------------------------------------
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----------------------------------------------------ACCAACCAACCTCCACAGTG--------
--------------------------------------------------------------------------------
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---------------------------------------------
