>input_sequence_53174
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----ATGACGGACTGCACCGACTCGCCGTCTTGCCGTGCTGGAGCAGGCGCGCCCGTGCTGGAGCGGCCAGACGAGATGA
AGGGCACGAACGGCGACGGAGCAGGCGCGCTGTGCCAGTACCAGCACGGCGGCCCCGCCAGGGCGCCGCGGCTGGGGCTC
GAGATCCGCGAGCCCTTCCTGCGTCTGATCACGTCCATGCGAGCCGCGCTCAACCCCGCCGCCGACGACAGAGGCGCCGG
CCCAGAGGGGGAGGGGGCGCCAGCGGGGAAGAATCAGGGCCAGAGACGGCTGAGCCGGGTGGGACTGCGGGCGCTCCAAA
TCGGCGACAGCAAGGTTCC--------------TGCTCAACTATCTA--------------------------------T
GCACATCGATAGAATCGCATGCTCTTTCTTGGTTTCTTTGTGTTCCTTTCTTTCTTGGCTCTCTTGTTTTGTTGATTGTT
AT------CTTCTATGTACCCACTCCTGGCCATATAC---AGATCGCTCGAACGGACGAGTTCGACATAGCGGCCAAGTT
CCAGTACAAGAAGCCCAAGAAGATCGTGCTCCAGCTGCACCGGGCCGACGCCTTGGTCAAGATCCACATCCTCTGGTCCA
ACATCCTGGCCATGTCGGCGCGCTTCGACGACGCCAGATTCGACACGCTGAGGATCCAGGTATATATGATGCATCTGCGG
CAGGAGTCCGTCTTTGTTTCTCCC-TTTTAAACAGAGAGGATCATCATG------GTG---------------ATGCGAC
TAACAATGAATG-----------AACCGATCGGTGTTTGTACGTGCAGGTCAAATGCGCGTCCGAGCGGTACAGTGCTAT
TCAGCCTCCAGCAGCAAGCAGAATGCATCTCCGATGGCAGCGCTGCAACGATGTTATTCCAAGGTAATAATAGTAAGC--
-----CATGGTTGATCTTGATTTCTCCATCGTAGGTTTCGATCTGCAGCTACTACTACTAAG----------------TA
CTAACGCTTCACTTGAACCATTATTGTTCAATCTCCAGGACCTTTTTGCTCTGGTTTGACAAGGGGACGCTGGAGAGGGG
CTACGGCAAGATGATGTACGCCGACCCTTCGCTGCTTCTACTGCCGTCGCCCCCTCCGGGACAAGGAGAGGAGGG-----
-GGAGGAAGAAGCCCCGTCCCCACCATTCCTCTTTGGCGCGACGCCGAGCACG---ATGATGATGACAGGCTCAGCAAAC
ACAGGTAAACAGCTAAAATTCTGGTCATTCTCCAAGAC---TCCCAAGTGATCGGAGGCTGTCTGCTCGGCGCTGTTTTG
CTCCTGCCCTTCTTCAGCTGAACCTGAA-ACAACGCACGGTTTTT-CTATGATTTGTAGGG---GCCGATCCCGCGACGT
ATCATGAGTACTGGGGCACCCAGTTGCAGGACGCGATTCAGTCGGCACATATTCGTTCCTTGTACAGATAG---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
>chr4D_1_TraesCS4D01G268300
TAGCTCTAATTGAGTCAAATTCCACAACAATATGCT---------TTTTTTCCTCTCCATTTTTCACCGTGAAAGCTTCT
CTCAATCCCTCCCTACTGCTTTCTTTCCCGGACACAGGTTTACCCGACTCACGAGGACTTGGCTATTCAATAAAGGAGGG
AGTCAACGTGAGCCTTAGGGTCCAAGAATATTCCATTGGTGTCAGCTATTAGCGCCCCGCCATGAAAT--TAAGAACATA
AACCCAATAGCCCGGAAGGGAACGTTTTGTCC-AAACTCATTTCGTATTCGATAATCCAACCCTACAAGAAAGAGGGTAC
TAGTTCACGATGGCGGCGGCAATCCCTTGATGAAGCCATTGTCTTAGTTGCTCGCGGTGTCCGTGGTTTGGAATGGGGAT
GTTGAACGCCGTGTTCGGTATAGGGTGCTACTCGGGACATGGGCATCCGGGGTGCAATGTGCAACATCGTCGACGGTTCC
TCCATGACTTCTTCCCT-AGGCGTGGTCAGGTCTTACAACCCACTTGCCGACTCCTCTAGACGTTAA---GAGTGTGCAT
TGATCCTCTCGGTTTTGGAGTTGTGGTTGTGTGACGGAGGCGACCCGCATTGGCCGTGACACGGTCTAGGTGAAGAAGCT
AGCTTCAAGTCTTAAGAGCTCAAGATCAGCTCGGTTGGCGATGGCCACGACGAGCTCACCAACCTGAGTAACCTCCCGCT
CTTGGTCCGATCGAGTTTAGCA----------------------------------------------------------
--------------------------------------------------------------------------------
----TCACAGGACGTGTCGTCCCGTCACACGGTACCTATATATACCCCGGCCCCACTAA-----AGTGCAGCTGCACCAA
CCGCAATCCCAATTCGCAACGGCCCTAACAGACATACGCACGGGCGCGC----GGCCGGCAGCAGGGCAAGTCGGCGACT
CGTGCGCCCGCCGGACACCGGCCACGCTGCACCGGCCTAGCTTCAAACGCGTCGTACGTCTACACCCGCGTGCCGACGCA
GGCTTCCGCTTTTCTCCCTTCCCACCGCC-------------------------------------CCCCGGCGGCCAGA
CGAGATGACGGACTGCACCGACTCGCCGTCTTGCCGTGCTGGAGCAGGCGCGCCCGTGCTGGAGCGGCCAGACGAGATGA
AGGGCACGAACGGCGACGGAGCAGGCGCGCTGTGCCAGTACCAGCACGGCGGCCCCGCCAGGGCGCCGCGGCTGGGGCTC
GAGATCCGCGAGCCCTTCCTGCGTCTGATCACGTCCATGCGAGCCGCGCTCAACCCCGCCGCCGACGACAGAGGCGCCGG
CCCAGAGGGGGAGGGGGCGCCAGCGGGGAAGAATCAGGGCCAGAGACGGCTGAGCCGGGTGGGACTGCGGGCGCTCCAAA
TCGGCGACAGCAAGGTTCC--------------TGCTCAACTATCTA--------------------------------T
GCACATCGATAGAATCGCATGCTCTTTCTTGGTTTCTTTGTGTTCCTTTCTTTCTTGGCTCTCTTGTTTTGTTGATTGTT
AT------CTTCTATGTACCCACTCCTGGCCATATAC---AGATCGCTCGAACGGACGAGTTCGACATAGCGGCCAAGTT
CCAGTACAAGAAGCCCAAGAAGATCGTGCTCCAGCTGCACCGGGCCGACGCCTTGGTCAAGATCCACATCCTCTGGTCCA
ACATCCTGGCCATGTCGGCGCGCTTCGACGACGCCAGATTCGACACGCTGAGGATCCAGGTATATATGATGCATCTGCGG
CAGGAGTCCGTCTTTGTTTCTCCC-TTTTAAACAGAGAGGATCATCATG------GTG---------------ATGCGAC
TAACAATGAATG-----------AACCGATCGGTGTTTGTACGTGCAGGTCAAATGCGCGTCCGAGCGGTACAGTGCTAT
TCAGCCTCCAGCAGCAAGCAGAATGCATCTCCGATGGCAGCGCTGCAACGATGTTATTCCAAGGTAATAATAGTAAGC--
-----CATGGTTGATCTTGATTTCTCCATCGTAGGTTTCGATCTGCAGCTACTACTACTAAG----------------TA
CTAACGCTTCACTTGAACCATTATTGTTCAATCTCCAGGACCTTTTTGCTCTGGTTTGACAAGGGGACGCTGGAGAGGGG
CTACGGCAAGATGATGTACGCCGACCCTTCGCTGCTTCTACTGCCGTCGCCCCCTCCGGGACAAGGAGAGGAGGG-----
-GGAGGAAGAAGCCCCGTCCCCACCATTCCTCTTTGGCGCGACGCCGAGCACG---ATGATGATGACAGGCTCAGCAAAC
ACAGGTAAACAGCTAAAATTCTGGTCATTCTCCAAGAC---TCCCAAGTGATCGGAGGCTGTCTGCTCGGCGCTGTTTTG
CTCCTGCCCTTCTTCAGCTGAACCTGAA-ACAACGCACGGTTTTT-CTATGATTTGTAGGG---GCCGATCCCGCGACGT
ATCATGAGTACTGGGGCACCCAGTTGCAGGACGCGATTCAGTCGGCACATATTCGTTCCTTGTACAGATAGCCGTTATTC
ATTGATATTCATTTTCTTCATTTGTTGTATAGATGCCATACACGGTACATTCAAACAATCAATGGTCTTGTCACATACAA
TCTTTTGTACAATGTTGAGATTGACATTTATGTCGCGTCATATAAACGAAAACGATGCCCCGGCAAAAGGAATTTGTAAA
CCTCGGCATTG-CCCAATGGTAGTAGATTGTTGGAAATGTAGCGCGATCTCGAAGCAGATTTTGCTACAATTTGGACGAT
CTGACCTGGGCAATGAGCTCTCTTCTCAAGATCTTGCCTGCGGCTGACTTTGGCACGCTCTCCACGAAGGTGACCCGCCT
CAGTCTTTTGTAGTGCGTGACCTGAAATGCAGGTCAGAGTTAAAGCTGGATTAGGATGCAGTTGTGAAAGAAC-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------AAAAAAACA
TTGCTTGTTCAAGTGTGTCT-TTTCATGCTAGTGATGGTGACTCGTCCACAAGTG-TGCTGCTATTTGAGTTGAGGTCCT
GGAGTTTAAGGTAGAGG-------TACTCTGATGTCGCGATTTAGCAAGGTTTGAAGTCAGCCTCACCTGCTTCGCGATA
AACTTCTGGACGTCCGCTTCGGTTAATGAACTGGCAGGTGATCTCACCACATAGGCAATAGGAACTTCCCCAGCTACATC
ATCAGGGAACCTTGGAAACAAGCAGAGCTCCAAG----TCAAGAGATAAGAAACAGCAGACAAAAAGAAGTCCAAACCAA
CAAGGTTGCAACAATTTATTTTATACTCGAAAGCCACTAGAATCACTTAACGTTTCGGAGGCAACTTACGGGATAACGAC
GGCATCCAGAATCTCTGGATGAGATAGAAGTAACCCTTCAAGCTCAGCAGGTGCAATCTACCAGTTAAACAAACAAAAGA
TCAGAGGGGTTTATGTACAGAGGACAAAAGTATGACGTATGTTCGAGCAAGAAAACAAGTGCAAAAGGACGGGTTCCGTC
G-TGATCCTTAGATTGGATACTAACAAAGCAAGGCTTCAATTCA
>chr4A_1
TAGCTCTAATTGAGTCAAATTCCACAATTTCAAAGAATAGTATGCTTTTCCCCCCTCCATTTTTCACCGTGAATG-TTCT
CTCAATCCCTCCCTACTCCTTTCTTTCCCGAGCACAGACTTACCCAACTCATGAGGACCTGTCTATTCAATAAAGGACGG
AATCAACGTGAGCCTTAGGGTCCAAAAATATTCCATTGGTGTCGGCTATTAGCGCCCACCAGAAAATTAATAAGAACATA
AATCCAGTAGCCCGAAA-GGAAGGTTATGTCC-AAACTCATTTCATATTCGATAACCCAGCCGTACATGAAAGAGGGTAC
TGGTTGACGATAG----------CCCTTGATGAATCCATTGTCTTAGTTGCTCGTGGTGTCCGCGGTTTAGAATGGGGAT
GTTGAACGTTGTGTTTGGTATGGGGCGTTTCTCAGGGCGTGGGCATTCGGGGCGCAATATGCAACATCGTCGACGATTCT
TCCATGACTTCTTTCCT-GGGCGTGGTCAGGTCCTACAACCCACTTGCCGACTCCTCTAGACGTTAA---GAGTGTACAT
TGATCCGCTCGGTTTTGGAGTCGTGGTTGTGTGGTGGAGGTGACCCGCATTGGCCTGGACACGGTCTAGGTGAAGAAGCT
AGCTTCAAGTCTTA-GAGCTCAAGATCAGTTCGGTTGGCGATGGCCACGACCAGACGAGCCTACC----AACCTCCAGCT
CTTCGTCCGATCGAGTTTAGCTTCACAGGACGTGGAGAAAATATCAGGTGATACAAGAGTTTAGGTGCTACCATGATACG
GGTTTTCGTGAGCCATTGGATCAGAGATCTAAGGGTGACAGCCATCCTTTTGGACTTGCACGTAAATATCAGATTCTGAA
AGCTTCACAGGACGTGTCGTCCCGTCACACGGTACCTATATATACCCCGGCCCCACTAA-----AGTGCAGCCGCACCAA
CCGCAATCCCAATTCGCAACGGCACCAACAGACACACGCACGGGCGCGCGCGCGGCCGGCAGCACGGCAAGTCGGCGACT
CGTGCGCCCGCCGGACACCGGCCGC--------------GCTACAAACGCGTCGTACGTCTACGCCCGCGTGCCGACGCA
GGCTTCCGCTTTTCTTCCCTCCCCCCGCCCGCTCCTCCTCCCCCCATGCGCGGGCGCCGCACCGCCCCCCGGCGGCCAGA
CGAGATGACGGACTCCACCGACTCGCCGTCGGAGC------------------------ACGCCGGC-------------
--GGCACGAACGGCGACGGAGCAGGCGGGCTGTGCCAGTACCAGCACGGCGGCCCGGCCAGGGCGCCGCGGCTGGGGCTC
GAGATCCGGGAGCCCTTCCTGCGTCTGATCACGTCCATGCGAGCCGCGCTCGACCCCGCCCCCGACGACGGAGGCGCCGG
CCCAGAGGAGGAGGGGGCGCCAGCGGGGAAGAATCAGGGCCAGCGACGGCTGACGCGGGTGGGACTGCGGGCGCTCCAAA
TCGGCGACAGCAAGGTTCATACTTCCTACTCATTACTCAACTATACTCCGGC---------------------------T
GCACACCGATAGAATCGCATGCTCTT----GGTTTCTTTGCGTTCCTTTCTTTCTTGGCTATCTTGTTTTGTTGATTGTT
ATTACTACCTTCTATGTACTCGCTCATGGCCATATCTTCTAGATCGATCGAACGGACGAGGCCGACATAGCGGCCAAGTT
CCAGTACAAGAAGCCCAAGAAGATCGTGCTCCAGCTGCACCGGGCCGACGCCTTGGTCAAGATCGACATCCTCTGGTCCA
ACATCCTGGCCATGTCGGCGCGCTTCGACGACGCGAGATTCGACACGCTCAGGATCCAGGTATGATGCAATGATGCA---
---------------------CCC-TTTCAAACAGAGAGGATCATCATGATCATGGTG---------------ATGTGAC
TAACAA---------------------------TGTTCGTGCGTGCAGGTCAAATGCGCGTCCGAGCGGTTCAGTGCTAC
ACAACCTCCAGCAGCAAGCAGAATGCATCTCCGATGGCAGCGCTGCGGCGATGTTATTCCAAGG---TAATAATACTAAG
CCAGGCATGGTTGATCTTGATTTCTCCATCTTAGGTTTCGATCTTAGGCTACCGTGCAGAAGGTGACTGACTGGCTACTA
CCAGCGCTTCACCTGAACCATTGTTGTTCGATCTCCAGGACCTTTTTGCTCTGGTTTGACAAGGGGACGCTGGAGAGGGG
CTACGGCAAGATGATGTACGCCGACCCTTCGCTGCTTCTACTGCCGCCGCCGCCTCCGGGACAAGGAGAGGAGGAGGAGG
AGGAGGAAGAAGCCCCGTCCCCGCCATTCCTCGGAGGCGCGACGCCGAGCACGGTGATGATGATGACAGGCTCGGCAAAC
ACAGGTAAACGGCTAAAATTCTGGTCATTCTCCAAGAC---TCCCAAGTGGTCGGAGACTGC---CTCGCCGCAGTTTTG
CTCCTGCCCTTCTTCAGCTGAACCTGAACACAACGCACGGTTTTTTCTACGTTTTGCAGGGGCCGCCGATCCCGCGGCGT
ATCATGAGTACTGGGGCACCCAGTTCCAGGAC---------TCGGCACATATCCGTTCCTTGTACAGATAGCCGTTATTC
ATTGATATTCATGTTCTTCATTCGTTGTATAGATGTCATGCACGGTACATTCGAA----CAATGGTCTTGTCACATACAA
TCTTTTGTACAATGTTGAGATTGACATTTATGTTGCGCCATATAAACGAAAACGATGCCCCGGCAAAAGGAATTTTTAAG
CCTCGGCATCG-CCCAATGGTAGTAGATTTCTGGAAATGTAGCACGATCTCGAAGCGGATTTTCCTACAACTTGGACGAT
CTGACCTGGGCAATGAGCTCTCTTCTCAAGATCTTGCCTGCGGCTGACTTTGGCACGCTCTCCACGAAGGTGACCCGCCT
CAGTCTTTTGTAGTGCGTGACCTGAAATGTAGATCAGAGTTAAAGCTGGATTAGAATGCAGTTGTGAAAGAAC-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------AAAAAAAAAACA
TTGCTTGTTCAAGTGTGTAT-TTTCATCCTAGTGATGGTGAGTCGTCCACAAGTTCTGCTGCTATTTGAGTTT------T
GGAATTTATAAGGTAGAGGTACTCTGATCTGATGTCGCGATTTAGCAAGGTTTGAAGTCAGCCTCACCTGCTTGGCGATA
AATTTCTGGACGTCCACTTCGGTTAATGAACTGGCAGGTGACCTCACCACATAGGCAATAGGAACTTCCCCAGCTTCATC
ATCAGGGAACCTTGGAAACAAGCAGAGCTCCCAGTCAATCAAGAGATAAGAAACAGAAGACAAAA-GAAGTCCAAACCAA
GAAGGCTGCAAGAATTATTTTATACTCAAAAAGCCGCTAGAATCACTTAACGTTTAGGAGGCAACTTACGGGATAACGAC
GGCATCCAGAATCTCTGGATGAGATAGAAGTAATCCTTCAAGCTCAGCAGGTGCAATCTACCAGTTAAACAAACAAAAGA
TCAGAGGGGTTTATGTACAGAGGACAAA-GTATGACGTATGTTCGAGCAAGAAAAAAAGCGCAAAAGGACGGGTTTCCAT
CATGATTCTTAGATTGGATACGAGCAAAGCAAGGCTTCTATTCA
>chr4B_220
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------TAAGAACATA
AACCCAGTAGCCCAGAA-GGAAGGTTATGTTCAAAACTCATTTCGTATTCGATAACCCAGCCGTACAAGAAAGAGGCTGC
TAGTTGACAATGGTGGCGGCGATCCCTTGATGAAGCCATTTTCTTAGTTGCTCGCGGTGTCTGCCGTTTGGAATGGGGAT
GTTGAATGCCATGTTTGGTATGGGCTGCTTCTCAGGACGTCGGCATCCGGGACGCGATATGCAACGTCGTCAACGGTTCC
TCCATGACTTCTTCCCTTAGGCGTGGTCAGGTCCTACAACCCACTTGCCGACTCCTCTTGGCGTTAAGGTGAGTGCACAC
TGATCCGCTCGGTTTTGGAGTTGTGGTTGTGTGACGGAGGTGACACACATTGGCCGTGACACGGTCTAGGTGAAAAAGCT
AGCTTCAAGTCTTA--AGCTCAAGATCAGTTCGGTTGGCGATGGCCACGACGAGCT-----TACC----AACCTTCAGCT
CTTCGTTCGATCGAGTTTAGCTTCACAGGACGTGTCA-------------------------------------------
--------------------------------------------------------------------------------
-------------------TCCCGTCACACGGTACCTATATATACCCCGGCCCCACTAATATAAAGTGCAGCCGCACCAA
CCGCAATCCCAATTCGCAACGGCCCTAACAGACATACGCACGGGCGCGC----GGCCGGCAGCACGGCAAGTCGGCGACT
CGTGCGCCCGCCGGACACCGGCCCGCCGC-------------------------TACGTCTACGCCAGCGTGCCGACGCA
GGCTTCCACTTTTCTCCCCTCCCCCCGCCCGCTCCTCCTCCTCCCATGAGCGGGCGCCGCACCGCCCCCCGGCGGCCAGA
CGAGATGACGGACTCCACCGACTCGCCGTCGGAGCGCGCGGGCGCCGGCTTGGGCCAACACGCCGGC-------------
--GGCACGGATGGCGACGGAGCAGGCGCGCTGTGCCAGTACCAGCACGGCGGCCCCGCCAGGGCGCCGCGGCTGGGGCTC
GAGATCCGGGAGCCCTTCCTGCGTCTGATCACGTCCATGCGAGCCGCGCTCGACCCCGCCGCCGACGACAGAGGCGCCGG
CCCAGAGGGGGAGGAGCCGCCAGCGGTGAAGAATCAGGGCCGGAGACGGCTGACGCGGGTGGGACTGCGAGCGCTCCAAA
TCGGCGACAGCAAGGTTCC--------------TACTCAACTATAGTACTAGTACATACTACTGTACCATTATCATCTGT
GCACATCGATAGAATCGCATGCTCTT----GGTTTCTTTCTTTCTTGC--------------------------------
-----------CTATGAACTCACTCCTGGCCATATAC---AGATCGATCGAACGGACGAGTTCGACATAGCGGCCAAGTT
CCAGTACAAGAAGCCCAAGAAGATGGTGCTCCAGCTGCACCGGGCCGACGCCTTGGTCAAGATCGACATCCTCTGGTCCA
ACATCCTGGCCATGTCGGCGCGCTTCGACGACGCGAGATTCGACAAGCTGAGGATCCAGGTATATATGATGCATCTGCAG
CCGGAGTCCGTCTTTGTTTCCCCCCTTTTGAACAGATCCTCATGTATGGTGATGCAAGCATGAAGTACAGTATATGCAAC
TAACAATTTACATGTGTGCAACAAACCGATCGGTGTTTGTACGTGCAGGTTAAATGCGCGTCCGAGCGGTACAGTGCTCC
TCAACCTGCGGCAGCAAGCAGAATGCATCTCCGATGGCAGCGCTGCGACGATGTTATACCAAGG---TAATAGTAAGC--
-----CATGGTTGATCTTGATTTCTACACGTTAGGTTTCGATCTCTAGCGCTTCGCCTGAAGC-----------------
-----------CCTGAACCATTGTTATTCAATCTCCAGGACCTTTTTTCTCTGGTTTGACAAGGGGACGCTGGAGAGGGG
CTACGGCAAAATGATGTACGCCGACCCTTCGCTGCTTCGACTGCCGTCGCCCCCTCCGGGACAAGGAGAGGAGGG-----
-GGAGGAAGAAGCCCCGTCCCCGCCATTCCTCATAGGCGCGACGCCGAGCACG---ATGATGATGATAGGCTCAGCAAAC
ACAGGTAAACTGCTAAAATTCTGGTCATTCTCCAAGACGACTCCAAAGTGATCGGAGACTGC---CTCGGCGCAGTTTTG
CTCCTGCCCTTCTTCAGCTGAACCTGAA-ACAACGCACGGTTTTTTCTACGATTTGCAGGGGCCGATTCCCCGAT---GT
ATCATGAGTACTGGGGCACCCAGTTGCAGGAC---------TCAGCACATATTCGTTCCTTGTACAGATAGCCGTTATTC
ATTGACATTCATTTTCTTCATTCGTTGTATAGATGTCGTACATGGTACATTCGAA----CAATGGTCTTGTCACATACAA
TCTTTTGTACAATGTTGAGATTGACATTTATGTTGCGTCATATAAACGAAAATGATGCCCCGGCAAAAGGAATTTGTAAG
CCTAAGCATTGCCCCAATGGTAGTAGATTTTTGGAAATGTAGCACGATCTCGAAGCAGATTTTCCTACAACTTGGACGAT
CTGACCTGGGCAATGAGCTCTCTTCTCAAGATCTTGCCTGCGGTTGACTTTGGCACGCTCTCCACGAAGGTAACCCGCCT
CAACCTTTTGTAGTACGTGACCTGAAATGCAGGTCAGAGTTACAACTGGTATAGAATGAGCCAACAACAGCAGCAACAAC
AACAACAACAAAGCCTTTAGTCCCAAACAAGTTGGGGTAGGCTAGAGGTGAAACCCATAAGATCTCGCAACCAACTCATG
GCTCTGGCACATGGATAGCAAGCTTCCACGCACCCCTGTCCATAGCTAGCCCTTTGTCGATACTTCAATCCTTCAGGTCT
CTCTTAACGGACTCCTCCCATGTCAAATTCGGTCGACCCCGCCCTCTCTTGGTATAGAATGAGCCGTGAAAAAAAAAACA
TTGCTCGTTCAAGTGTATCTCTTTCATGCTGGTGATGGTGAGA----------------------------TT------T
GGAATTTAAGATACAGG-------TGCTCTGATGTCACGATTTATCAAGGTTTGGAGTCAGCCTCACCTGCTTTGCGATA
AACTTCTGGACGTCCGCTTCGGTTAATGAACTGGCAGGTGACCTCACCACATAGGCAATAGGAACTTCCCCAGCTTCATC
GTCAGGCAACCTTGGAAACAAGCAGAGCTCCCAGTCAATCAAGAGATGAGAAACACCAGACAAAA-GAAATCCAAACCAA
GAAGGCTGCAGCAA-TTATTTTATACTCAAAAGCCGCTAGAATCACTTAACGTTTAGGAGGCAACTTACGGGATAACGAC
AGCATCCAGAATCTCTGGATGAGATAGAAGTAATCCTTCAAGCTCAGCAGGTGCAATCTACCAGTTAAACAAACAAACGA
TCAGAGCGCTTTATCTACAGAGGACAAA-GTATGATGTATGCTGGAGCAAGAAAACAAGTGCAAAAGGACGGGTTTCCAT
CATGATTCTTAGATTGGATACGAGCAAAGCAAGGCTTCTATTCA
>SNPs
---------------------------SSSS-SSSS-------------SS--S-------------------S-S----
-----------------S------------SS-----SS------S-----S------S--S---------------S--
-S-----------------------S-----------------S-------------SS-SSSS--S-------------
------S----------S----S---S----------------------------S---S--S-----------------
-----S-------S------S------------------------------------------S----------------
---------------S-----S-------S---S----S-------------S-----S---------------------
---------------------------------S------------------------------------------S---
------S---------------------------------S---------------------------------------
--------------S--------------S--------------------------S-S-SSS-SSSSS-------S---
---S-----------------S----------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------S-------
----------------------------------------------------------------S---------------
-----------------------S-S-SSSSSSSSSSSS---S--------------------S----------------
------------------S----S--------------------------------------------------------
--------------S---------------SSSS--S--S--S--S---SS-SS-SSS-SS-SSS-SSSSSSSSSSSSSS
SS------------------------------------------------------------------------------
--------S------------------------------------------S----------------------------
-----------------------------------------------------SS-------------------------
----------------------------------S---------SSS---------------------------------
--------------------------SSSS------------------------------S-------------------
-------------------S--------------------------S---------------------------------
----------------------------------------------------------------S---------------
----------------------------------S-------------------------------------------S-
-S------------------S-----------------------------------------------------------
-------SS-SS-------------------------------------------------------------------S
---S------------------------------------------S-----------------SSS-------------
------------------------------S-------------SS-------SSSSSS---------------------
-S-S--------S---------S---------------------------------------------------------
--------------------------------------------------------------------------------
----------------------S---------S-S---------------------------------------------
----------S----------------------------------------------S---SSSS--------S------
-------------------------------------------------S------S-------------------S---
--------------------------------SSSSSSSSS---------------------------------------
----------------------S------------S----------------S--SSSS---------------------
---------------------------------S---------------------------------------------S
-----------------------------S-------------S-------------------S------S---------
--------------------------------------------------------------------------------
------------------------------------------------------S-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------S------------S-----------------SSSSSSS-
---S------S--S-----------S-----------------------------------------------S------
-----------------------------------------S---------------------------------S----
-------------------------------S---------------------------------S--------------
S----S----------------------S------S-------------------S------------------------
---------------------------------S----------------------------------------------
----------------------------S----------------------------------------------S-SSS
S-----S--------------S-S--------------S-----
>forward_139
--------------------------------------------------------------------------------
---------------------------------------TTACCCGACTCACGAGGACT---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
>reverse_1271
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------GACGAGATGA
AGGGCACGAA----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
>forward_1215
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------CCAGA
CGAGATGACGGACTG-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
>reverse_2554
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------TGTTTTG
CTCCTGCCCTTCT-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
>forward_2435
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------CGTCCCCACCATTCCTCTTT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
>reverse_3736
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------CGGAGGCAACTTACGGGATA-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
