>input_sequence_53109
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------ATGCCCCCTGCCACTTCCAAC
CTGTTTGTTGTCAACGTAATGCTTTCGTCCCTGTGCCGTTCCTCTGACCTCGCCTCCGCACGTCTATTCTTTGACGACAT
CCCCGACAAGGACATCGTCTCTTGGTCGACCATGCTCGCTTGCTATTTCTCCAATAAGAGCGTAGCTGATGGCCTTGCCT
TCTTCCGCACAATGACATTCACCACCACACTTGCTCCAGATTATGTAATGCTTGTCACCGTCCTCACAGGCTGTGCGGCG
GCTGGCTTGCTGCAGCCGTTCTGCAGATCCATTCACGGGTATATTGTGCGGCGCCAGGCAGTCAGTATGCACCTTGGGAC
ATCGCTTATTGATTGCTATGCAAAGGTTGGCCGCCTCGATTATGCTTCCCGTATCTTTGCGCGGGTGCCCTCCAGGAAAG
TGATGCACTGGACTGCAATGATTTGTGGGATGGCTATGCATCTGCATTATGACGAGGCTATCCAGCTGTTTGAGGAGATG
CGCCGGCAAGGAGTGCGACCGAATGAGATGACATTCACTGCCGTGCTCAGTGTATGCGGGCATGCTGGACTGGTGGAGCA
AGGGAGAGAGTTCTTTAAACTTATGGTTGAGGAATATGACCTTGAGCCAACTATACATCACTACGGGTGCATGGTTGATA
TCTTTGCAAAGGCAGGTCAGTTGGAAGATGCTTATGATGTTATCAAGACCATGAGAGTGGAGCCAAATATCATCATCTGG
ACTTCGTTGCTAGCGGCTTGCAAGAGGCTTAAGAATTTTGACATTGCAATGGAGGGACTAGAGAAAGTATTGGCAATGGA
GATATCTGATGAAAATGCTGGATTATATACTCTTATATCTGACCTGTATGCCATGGGTGGGCGGTGGGATGATGTGTTGA
AGGTTAGGAGATTGATGGAGGAACATAATGTGCGGAACAACAGAGGATCGAGCTCCATTAAGGCGGGCAAACCACCTGGC
TTGATTGTTCCTGCCGTCAGTTGATCTTTTGCTCGGTTCAACGTCTGCAAAGTTTTGGGTTGAATTGTTGGATGATACTC
TTTTT-CTTAGACTTGCCACAGATGTATTCAGCGGATAGTTCCACACGTTGGTTGATGAAATCCAGCTG-GGCCTTGTGG
GAATCAGCGGAATGGATACAAATTTCCGGTCTAATCTCCTGCAATATTGTGTTGAGGTAAGTCGATCACTGCT-------
---------------ATTGGGGATTATGAGTTGAGATATTAGAAGAATGATTTGGTTG--ACACAGGCGATTCACATGCA
TATGAATATGTGATCACGTGTTATGAGCAAACCGAACTCATGACTGGACATCCTCGTGGTCATGTACTGATTTCCATCTT
C---ATCGTGCCCATAGGACTGGAGATGA---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------
>chr3A_1_TraesCS3A01G329600
TTAATCAATGGGGGCAAAAGCATACTATGCACTAAATAAGAATTAGAATATAGATAAAGCTTAAGAATGTCATTCATAGA
TTATCTTAGAAGCATAAAAAAATTGACAAATAAAGAATGATATCCCATTATACACAATTGTGTGTATGCCTCTTGTGTAC
CATGTTGACAAACTACAAACTTTCAGTTATTTGGAATCATATTATTCGTCAGAGTAAAAGAAAAGAGATTTCTCTTCGTT
CTCAATGATCAATCGCTTCAATCTACGAAGAGAAATCTCCCAGGTTCGAGATTTAACTAGTTTTTTTTAGACAAGTACTT
CTCAACTAGTGATTTCGGATAAATAGTACTCCTTCCGTTTCGAAATTCTCATCTTCAATTTGTCTAGATACAAATATATT
TTTAATACTAAAATGTTACTTGATACATCCGTATTAGACAAATACAAAAATTTTGGGAACGGAGTAGCACCCCATCGACG
ATCTTCT----T-AAAGAGCCCATGAAAGAATCGAGCAGGCTTTCAGCAGTACAGCCTGCTTCACTACGTGGTCCGATGC
AGCCCAACTTGCTCGACCGAGCCAACGCCTCGCCGAAGCAGGAAGTTTCACGGTCCAGCAGTCCCGCCCCAATTCCAAAC
CGAAGCGGCCGCGCCGGCGTCGCGCCGCTCACGA-----------CGCCGGACCCCTACTCGCCATGTCCCTTCCTCACC
ACCTCGCCGCCGGCGAACTCCTCACCGCCCTCCGCGGCGCCTCTTGCGGCTCCTCGGCCCTCCGATTGTACTCCCTCCTC
CGCATCCACCTCCCCCCCTCAGACCCCTCCTTG---GCTGGGCGCGCCGCCGTCTTCGCCCTCAAGCCCCTCTCCGCCGC
CGGCTCCCTCCCTCTCCTCTCCCACTTCCACGCGCACCTCATCAGGTCCAACCTCCTCGCCTACCCCCAGGTCGCCTCAT
CGCTCCTTCGTTCCTATTCACTCCTCTCCCCTGCGGTCGCCCACCACCTGTTCGATCAAATGCCCCCTGCCACTTCCAAC
CTGTTTGTTGTCAACGTAATGCTTTCGTCCCTGTGCCGTTCCTCTGACCTCGCCTCCGCACGTCTATTCTTTGACGACAT
CCCCGACAAGGACATCGTCTCTTGGTCGACCATGCTCGCTTGCTATTTCTCCAATAAGAGCGTAGCTGATGGCCTTGCCT
TCTTCCGCACAATGACATTCACCACCACACTTGCTCCAGATTATGTAATGCTTGTCACCGTCCTCACAGGCTGTGCGGCG
GCTGGCTTGCTGCAGCCGTTCTGCAGATCCATTCACGGGTATATTGTGCGGCGCCAGGCAGTCAGTATGCACCTTGGGAC
ATCGCTTATTGATTGCTATGCAAAGGTTGGCCGCCTCGATTATGCTTCCCGTATCTTTGCGCGGGTGCCCTCCAGGAAAG
TGATGCACTGGACTGCAATGATTTGTGGGATGGCTATGCATCTGCATTATGACGAGGCTATCCAGCTGTTTGAGGAGATG
CGCCGGCAAGGAGTGCGACCGAATGAGATGACATTCACTGCCGTGCTCAGTGTATGCGGGCATGCTGGACTGGTGGAGCA
AGGGAGAGAGTTCTTTAAACTTATGGTTGAGGAATATGACCTTGAGCCAACTATACATCACTACGGGTGCATGGTTGATA
TCTTTGCAAAGGCAGGTCAGTTGGAAGATGCTTATGATGTTATCAAGACCATGAGAGTGGAGCCAAATATCATCATCTGG
ACTTCGTTGCTAGCGGCTTGCAAGAGGCTTAAGAATTTTGACATTGCAATGGAGGGACTAGAGAAAGTATTGGCAATGGA
GATATCTGATGAAAATGCTGGATTATATACTCTTATATCTGACCTGTATGCCATGGGTGGGCGGTGGGATGATGTGTTGA
AGGTTAGGAGATTGATGGAGGAACATAATGTGCGGAACAACAGAGGATCGAGCTCCATTAAGGCGGGCAAACCACCTGGC
TTGATTGTTCCTGCCGTCAGTTGATCTTTTGCTCGGTTCAACGTCTGCAAAGTTTTGGGTTGAATTGTTGGATGATACTC
TTTTT-CTTAGACTTGCCACAGATGTATTCAGCGGATAGTTCCACACGTTGGTTGATGAAATCCAGCTG-GGCCTTGTGG
GAATCAGCGGAATGGATACAAATTTCCGGTCTAATCTCCTGCAATATTGTGTTGAGGTAAGTCGATCACTGCT-------
---------------ATTGGGGATTATGAGTTGAGATATTAGAAGAATGATTTGGTTG--ACACAGGCGATTCACATGCA
TATGAATATGTGATCACGTGTTATGAGCAAACCGAACTCATGACTGGACATCCTCGTGGTCATGTACTGATTTCCATCTT
C---ATCGTGCCCATAGGACTGGAGATGACAGAGAAAGATTTCTTTGAGTACATTGCCATTTTGGCCTTTCAGAGATGA-
CGAATGCAGACTAACAATGGGGTGTCAGGTCAGCGGCTGAAAAAGCCATTTGATTCTATACTAGTTCTTGTCAGGCGGTC
TGTTGCTAACAATGTGCAGCCCTAAGTGTTTCAAATAAATTCTACTACAACATTGGGTCCTGTCAACTTTGTTGATCATC
TGTTCTTTTGCCCAACAGTATGGCAGGTGAAATCTTTGCGGTGCATACACACGGCAGTGCTGGTTCGTCCTGTCAC--AA
-CTGTTTTAAAGCCTGTTGTATTCCAGTGAGAAACTGTGCTCTGATGTAAAAAGACCCTCTATTCAAAAGATATTGTTGC
TGGGATCATGGAACTGATTTTCTGTG----AAAAAGAAGAGGATGTTTTGCCATG-CCCGTACTTCTG-------ATTGC
CATTGCCCTGTTATAGTATTTAATTCACCTGCATATCGGTGATTAATTAGCTTTACGGGAAAGCGTCGTCTGAACCATTT
GAATGTTTACCTCA---TAGTACACACATAGACACGGCTTGCACTATGGCGTGACGCCCTAGTCTTCGCTGCGGCTCAGC
TTGACGCGTGAGCAGGACAGTTGACAAGAACCGACGGAAGACGTTGACGCTAAGCGACACC-TTAATCTTGATGTTACCA
GCCGCCTGAAAGTTCCCAGCATCACCGGAAGGATATACTACTGTGCTACTGGCCGAAGTATTTTCTTGGAGATCATCAGC
GCAATTTGTACCGTCCCGCG------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--CGTTCCCTCCCCGCCGCGGCGT------------GCGTGCCGCTATAGCTTCCTCCTCCTCCCGCCCCGGTCGCTTTC
GGGGACGACGCTGCTGCGCTGATATCCCAATGCCCCCGCCCTCTTCGTTCTCGTCCCCACAGCGCTCGTGTTGGTGTGTC
CTCCTCCA---------------------------TTCCCCACCGCCATTGTACGTCGCCAGTATAAGCTGCAGG---CT
CCGTCCGTGCACTTTGCGCGCCGCGTAGAGCGT
>chr3B_463
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------AGTAGCATCTCATTGATG
ATTCTTCTTAGTAAAAGAACCCATGAAAGAATCGAGCAGGCTTTCAGCAGTACAGCCTGCTTCACTACGTGATCCGATTC
AGCCCAACTTGCCCCG--------ACGCTTTGCCGAAGCAGGAAGTTTCACGGTCCAGCAGTCCCGCCCCAATTCCAAAC
CGAAGCGGCCGCGCCGGCGTCGCACGCCGCTCACATCGCGGCGTGCGCCGCACCCCTACTCCCCATGTCCCTTCCCCACC
AACTCGCCGCCGGCGAACTCCTCACCGCCCTCCGCGGCGCCTCTTGCGCCTCCTCGGCCCTCCGATTGTACTCCCTCCTC
CGCATCCGCCTCCCTCCCTCAGACCCCTCCTCCTTCGCCGGGCGCGCCGCCGCCTTCGCCCTCAAGCCCCTCTCCTCCGC
CGGCTCCCTCCCTCTCCTCTCCCACTTCCACGCGCACCTCATCAGGTCCAACCTCCTCGCGTACCCCCAGGTCGCCTCAT
CCCTCCTGCGTTCCTATTCACTTCTCTCCCCCGCGGCCGCCCACCACCTGTTCGATCAAATACCCCCTGCCACCTGCAAC
CTGTTTGTTGTCAACGTAATGCTTTCGTCCCTGTGCCGTTCCTCTGACCTCGCCTCCGCACGCCTATTCTTTAACGACAT
CCCCGACAAGGACATCGTCTCTTGGTCGACCATGCTCGCTTGCTATTTCTCCAATAAGAGCGTAGCTGACGGCCTTGCCT
TCTTCCGCACAATGACATTCACCACCACACTTGCTCCAGATTATGTAATGCTCGTCACCGTCCTCACAGGATGTGCGTCG
GCTGGCTTGCTGCAGCCGTTCTGCAGATCCATTCACGGGTATATTGTGCGGCGCCAGGCAGTCAGTATGCACCTCGGGAC
ATCGCTTATTGATTGCTATGCAAAGGTTGGCCGCCTCGATTATGCTTCCCGTGTCTTTGTGCGGGTGCCCTCTAGGAATG
TGATGCACTGGACTGCAATGATTTGTGGGATGGCTATGCATCTGCATTATGACGAGGCTATCCAGCTGTTTGAGGAGATG
CGCCGGCAAGGAGTGCGACCAAATGAGATGACATTCACTGCTGTGCTCAGTGTATGCGGGCATGCTGGACTGGTGGAGCA
AGGGAGAGAGTTCTTTAAACTTATGGTTGAGGAATATGACCTTGAGCCAACTGTACATCACTACGGGTGCATGGTTGATA
TCTTTGCAAAGGCAGGTCAGTTGGAAGATGCTTATGATGTTATCAAGACCATGAGAGTGGAGCCAAATATCATCATCTGG
ACTTCGTTGCTAGCGGCTTGCAAGAGGCTTAAGAATTTTGACATTGCAATGGAGGTACTAGATGAAGTATTGGCAATGGA
GATATCTGATGAAAATGGTGGATTATATACTCTTATATCTGACCTGTATGTCATGGCTGGGCGGTGGGATGATGTGTTGA
AGGTTAGGAGATTGATGGAGGAACATAATGTGCGGAAGAACAGATGGTCGAGATCCGTTAGAGCGGGCAAACCACCTGGC
TTGATTGATCCTGCAGTCAGTTGATCTTTCACATTGTTCAACACCTGCAAAGTCTT-GGTTGAATTGTAGGACGATACTT
TTTTTTGTTAGACTCACCACAGATGTATTCAGCGGATAGCTCTACATGTTGCTTGATGAAATCCAGCTGAGGCCTTGTGG
GAATCAGCGGAATGAATACAAATTCCTGGTCTATTCTCCTGCAATATTGCATTGAGGTAAATCAGTGCAAATCATCGCTA
TTTGGATTTAGTCTCATTGGGGATTATGAGTTGAGATATTAGAAGAACCGAACTCAT-----ACAGGCGATTCACACGCA
T--------------ATGTGTTATGAGCAAACCGAGCTCATCGCTGGATATCCTCGTGGTCATGTACTGATTTCCGCT--
-TTCATTGTGCCCATAGGACTGGAGATAACAGATAAAGATTTCTTTGAGTACATTGCCATTTCGGCCTTTCAGAGAGAAC
CGAATGCAGACTAACAATGGGGTGTCAGGTCAGCGGCCGAAAAAGCCATTTGATTCTATACTAGTTCTTGTCAGGCGGTC
TGTTGCTAACAATGTGCAGCTCTAAGTGTTTCGAATAAATT---CTACAACATCGGGTCCTGTCAACTTTGTCGATCATC
TGTTCTTTTGCCCAACAGTATGGCAGGTGAAATCTTTGCAGTGCATACATACGGCGGTGCTGGTTCGTCCTGTCAC--AA
ACTCTTTTAAAGACTGTTGTATTCCAGTGAGAAACTGTGCTGTAATGTAAAAAGGCCTTCTATTCAAAAGATGATATTGC
CGGGATCATGGAACTGATTT-CTGTG----AAAAAGAAGATAATGTTTTGCCATTACCCGTACTTCTG-------ATTGC
CATTGCCTTGCTGTAGTATTTAATTCGCCTGCACATCGGTGATTAATTAGCTTTACGGGAAAGCGTCGTCTGAACCATTT
GAATGTTTACCTCATACTAGTACACACATAGATATGGCTTGCACTATGGCGTGACGCCCTAGTCTTCGCCGCGGCCCAGC
-TGACGCGTGAGCGGGACAGTTGACAAGAGCCGACGGAAGACTTTCACGCCAAGTGACACTTTTAATCTTGATGTTACCA
GGTGCCTGAAAGTTCCCAACATCACCAGAAGGATATACT---GTACCACTGGCCGAAGTA---TCTTGGAGATCATCAGG
GCAATTTGTACCGCCCCGCGCGATCCAAGAGCATATACCGTGCTTCCTGAGCTCTCTGAAAGTTCCGTGTCCGCTGTGCT
CCACAGCTCTCGCTGTCAGCCAGACGTCGCCATAACGGTGGCCATTCGGCCCAAGCGACAGCGCGGCGGCCGCGGGCGCC
CGACGCGGTCGGGTCTCGATCGGAGGCCTTGCGAGCGATCGCGGACAAACAGACGAAAGCGCTTGGCTTGGCTGCCCCCG
CCCGTTCCCTCCCCGCCGCGGCGT----ACGTGCAGGCGTGCCGCTATAGCTTCCTCCTCCCGT-CT--CGGTCGCTTTC
GGGGACGACGCTGCTGTGCTGATATCCCAATGCCCCCGCCCTCTTCATTCTCGTCCCCACAGGCCACAGTGCTCGTGTAT
CGTTGGTGTGGCCGTAGCCCCCTTGGCCTCCCCCCTTCCCCGCCGCCATAGTACGTCGCCACTATAAGCTGCAGGCTTCT
TCGTCCGTGCAGTTTGCGCGCGGCGTAGAGCGT
>chr3D_463
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------AGTAGCACCCCATCGATG
ATCTTCT----TAAAAGAGCCCATGAAAAAATCGAGCAGGCTTTCAGCAGTACAGCCTGCTTCACTACGTGATCCGAAAG
GGCCCAACTTGCTCGACCGAGCCAACGCCTCGCCGAAGCAGGAAGTTTCACGGTCCAGCAGTCCCACCCCAATTCCAAAC
CGAAGCGGCCGCGCCGGCGTCGCACCGCTCACGA-----------CGCCGGACCCCTACTCCCCATGTCCCTTCCTCACC
ACCTCGCCGCCGGCGAACTCCTCACCGCCCTCCGCGGCGCCTCTTGCGCCTCCTCGGCCCTCCGATTGTACCACCTCCTC
CGCATCCGCCTCCCCCCCTCAGATCCCTGCTCCTTCGCCGGGCGCGCCGCCGTCTTCGCCCTCAAGCCCCTCTCCGCCGC
CGGCTCCCTCCCTCTCCTCTCCCACTTCCACGCGCACCTCATCAGGTCCAACCTCCTCGCGTACCCCCAGGTCGCCTCAT
CCCTCCTGCGTTCATATTCACTCCTCTCCCCCGCGGCCGCCCACCACCTGTTCGATCAAATACCCCCTGCCACCTGCAAC
CTGTTTGTTGTCAACGTCATGCTTTCGTCCCTGTGCCGTTCCTCTGACCTCGCCTCCGCACGCCTATTCTTTGACGACAT
CCCCGACAAGGACATCGTTTCTTGGTCGACTATGCTCGCTTGCTATTTCTCCAATAGGAGCGTAGCTGATGGCCTTGCCT
TCTTCCGCACAATGACATTCACCACCACACTTGCTCCAGATTATGTAATGCTCGTTACCGTCCTCACAGGATGTGCGTCG
GCTGGCTTGCTGCAGCCGTTATGCAGATCCATTCACGGGTATATTGTGCGGCGCCAGGCAGTCAGTATGCACCTCGGGAC
ATCGCTTATTGATTGCTATGCAAAGGTTGGCCGCCTCGATTATGCTTCCCGTGTCTTTGCGCGGGTGCCCTCCAGGAAAG
TGATGCACTGGACTGCAATGATTTGTGGGATGGCTATGCATTTGCATTATGACGAGGCTATCCAGCTGTTTGAGGAGATG
CGCCGGCAAGGAGCGCGACCAAATGAGATGACATTCACTGCCGTGCTCAGTGTATGCGGGCATGCTGGACTGGTGGAGCA
AGGGAGAGAGTTCTTTAAACTTATGGTTGAGGAATATGATCTTGAGCCAACTGTACATCACTACGGGTGCATGGTTGATA
TCTTTGCAAAGGCAGGTCAGTTGGAAGATGCTTATGAGGTTATCAAGACCATGAGAGTGGAGCCAAATGTCATCATCTGG
ACTTCGTTGCTAGCGGCTTGCAAGAGGTTTAAGAATTTTGACATTGCAATGGAGGGACTAGAGAAAGTATTGGCAATGGA
GATATCTGATGAAAATGGTGGATTATATACTCTTATATCTGACCTGTATGCCATGGGTGGGCGGTGGGATGATGCGTTGA
AGGTTAGGAGATTGATGGAGGAACATAATGTGCGGAAAAACAGAGGGTCGAGCTCCATTAAGGCGCGCGAAGCACCTGGC
TTGATTGTTCCTGCAGTCAGTTGATCTTTTGCACAGTTCAACATCTGCAAAGTTTTGGGCTGAATTGTTGGATGATACTC
TTTTT-GTTAGACTTGCCACAGATGTATTCAGCGGATAGCTCCACACGTTGCTTGATGAAATCCAGCTGAGGCCTTGTGG
GAATCAGCGGGATGAATACAAATTTCCGGTCTATTCTCCTGCA-------------------------------------
----------------------ATTATGGGTTGAGATATTAGAAGAATGATTTGGTCTCAACACAGGCGATTCACGCGCA
TATGATTGTGTGATCATGTGTTATGAGCAAACCAAACTCATCACTGGATATCCTCGTGGTCATGTACTGATTTCCATCTT
CTTCATTGTGCCCATAGGACTGGAGATAAGGGATACAGATTTCTTTGATTTG-TTGCCATTTCGGCCTTTCAGAGAGGAC
CGAATGCAGACTAACAATGGGGTGTCAGGTCAGTGGCGGAAAATGCCATTTGATTCTATACTAGTATTTGTCAGGCTGTT
GCTAACAAACAATGTGCAGCCCTGAGCGTTTCAAATAAATT---CTTCAACATCGGGTCCTGGCAACGTTGTTGATCATC
TGTTATTTTGCTGAACGGTATGGCAGATGAAATCTTTGTAGTGCCTACATACACAGGTAATCCTGGTGCGCTCTGTTAAA
GCTCTTTCAAAACCTGTTGTATTCGAGCAAGAAACTGTGCTCTGATGTAAAAGGAGCTTCGATGTAAAAAC--ATGTTGC
TGGGATCATGGAACTGAGTT-CTTCTGTAAAAAAAGAAGAGAATATTTTGCCATG-CCTGTACTTTATGATTGCCATTGC
CATTGCCTTGCTATAGTACCATGTAATT-----CACCTGTGATTAATTGCTTTATGGGGAAG----CGTCTGAACCATTT
GAATGTTTACCTCATA---GTACACACATAGATATGGCTTGCACTATGGCGTGACGCCCTAGTCTACGCCGCGGCCCGGC
-TGACGCGTGAGCGGGACAGTTGACAAGAACCGACGGAAAACTTTTACGCCAAGTGACACTTTTAATCTTGATGTTACCA
GCCGCCTGAAAGTTCCCAACATCACCAGAGGGATATACT---GTGCTACTGGCCGAGGTA---TCTT-GAGATCATCAGG
GCAATTTGTATCGTCCCGCGCGATCCAAGAGCATATACCGTGCTTCCTGAGCTCTCTGAAAGTTCCGTGTCCGCTGTGCT
CCACAGCTCTCGCTGTCAGCCAGACGTCGCAATAACGGTGGCCGTTCCGCCCAAGCGACAGCGCGGCGGCCGCGGGCGTC
CGACGCGGTCGGGTCTCGATCGGAAGCCTTGCGAGCGATCGCGGACAAACAGACGAAAGCGCTTGGCTTGGCTGCCCCCG
CCCGTTCCCTCCCCGCCGCGGCGTGCGTACGTACAGGCGTGCCGCTATAGCTTCCTCCTCCCGCCCT--CGGTCGCTTTC
GGGGACGACGCTGCTGTGCTGATATCCCAATGCCCCCGCCCTCTTCGTTCTCGTCCCCACACTGCTCGT-----------
--------------------------------------------------------------------------------
---------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------S-
-----------------------------------------------------------------------S------S-
--------------------------------------------------------------------------------
-----------------------S-------------------------------------S------------------
------------------------------------------------S-------------------------------
-------S-----------------------SS-----S-----------------------------------------
------------------------------------------------------------S-------------------
-S-----S-----------------------S----S------------------------S-----------S-S----
--------------------------------------------------------------S-----------------
--------------------------------------------------------------------------------
----------------------------------------------------S-----------------S------S--
--------------------------------------------------------------------------S-----
----------------------------------------------------S---------------------------
--------------------------------------------------------------------------------
--------------------S-----------------------------------------------------------
----------------------------------------------------S---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------S--------------------------------------------------------------
-------------------------------------S--------S---------------------------------
--------------S-----------------S-S-------S-------------------------------------
------S--------------------------------S-----------S----------------------------
--------------S------------------S---------------SS---------S--SS-SSSSSSS-------
---------------------------------------------------------S------------------S---
-----S-S--------S------------------------S------S-------------------------------
------S--------------------S-----S----------------------------S-------------S---
-------------------------------------S------------------------------------------
-----------------------------------------SSS---------S--------------------------
---------------------------------------S---------S-----S------------------------
---S-----------------------------------------------------S--------------SS------
--------------------S--------------------S--------------------------------------
-------S--S---------------S------S----------------------------------------------
--------------------------------S-S----------------------------------S-----S----
S------------S----------------------------S--S----S---S-----S-------------------
------------------S-------S------------SSS------------------SSS----------------S
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------SS--SSSS-----------
----------------S---------------------------------------------S------SSSSSSSSSSS
-SSSSSSS---------------------------------S-------S-----------S------------------
S----------S---------S-----------
>forward_552
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------CAGCCTGCTTCACTACGTGG--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------
>reverse_1967
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------ATCGAGCTCCATTAAGGCGG--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------
>forward_1355
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------AGGCAGTCAGTATGCACCTT-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------
>reverse_2298
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------GACACAGGCGATTCACATGC---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------
>forward_2175
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TGTGG
GAATCAGCGGAATGG-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------
>reverse_3593
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------GGTGTGTC
CTCCTCCATTCC--------------------------------------------------------------------
---------------------------------
