>input_sequence_53088
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------------ATGGTAAGTTTCTACTGCTACAACTCACTCTGCGTCTATGCCTTGTTCATCTATTATTTCAATGT---
---ATATATACACATTGCTACACGTCTCATG-CATGCTCCATATTTGTTTTTTTACAAGTGCAGATCTGGATTCAACCGG
AAGATCCTAAACAGCTCACACGTATATTCAGTAGCCTTAGAGATGTTTATATCTACAATGTCTTTGCTGAGTGTGATTTG
AATTGGACATTCTTTATCCTTAAAGCTGCACCTTCACTGAAGAACTTCTATGTAAGTCTGTTAATTAAGATTTTCTATGC
CATTTGCCCACTTGATATT-TTTTTTCTTTGACATGTTTATGCATTTTCAGCACTAACTATATACCAGCATGCCACTAAC
GCTCTTCTGTCACCAATAATAAAGATGAGAGCAGGGTATGTGCAAGTGTAAATAGTTAGTTTTATTGCAAACAAAAGCAC
TTGTGGAAAATAAGTTAGTTGTATTGCACAAGCTAGAACACAAGGCAAACACACTCAGTCACTCGCAGCTTTAACGAAAG
GTACTACATGCCGCATTGGGATGTAGGCAATATGAGATTCATTAAATGATATCATTGACAATGCAATGCAAAAAGGTAGA
AATTCTTAAACATGGATTTTCTTGGGAGAGAATTTCCATGCAAGATAATGTTAGAATTCCTTCAAATTTCTACAGATCAT
GATATAATTGCATAGGTACCATATACAGCGTCATTCCTGTTTCAGAGAGCTGTATGCAGATTCCCCTAAAACCATATGAG
GGCCTATCTTTAAATACTAATATGAAGCTCAATGCATTTTTTTGAATAGTACTCCCTCCGATA-TTGATGCAGGTTTAGT
ACAACTTAGAACTAAAGTTGTGCTAGAGCAGCATCAATTAATATTGATTGGAGGGAGTAGTACATTTACTTGTAAGTTTT
TGTAGCTACCGATCTGTCGCTGTACTGCATCTTGAAAACTAGTATTGAGGTTGATGCTGATTTTATATGTAATATTTGCC
GTTTCTTTTGTTGTTGGGTCCATGCAGTTATCTCGACACTCTTGTGAACCCAACAAGTTTGAGGATATTGCCAAGAAGAC
CGACTTGGTGTGGGAAACCTCCAGTTTCAAGCATTTGAACTTGAAGCTGCTGTTCATGAAAGGGTTTTCGGAGGATGAGA
AGGTGATGAACTATATAAGACTTGTCATGAAAAGATCTATGGGCTTGAAGAGAATCGAACTGCATGATAAAGACCCATGT
GAGGAGTGCAAAGCCATATCCCCCGAGTGTTTAAGGTTTCCTGTGGATGAATCTAGCAAGCGTCGGATTAAGGAGCAACT
CACATATGGATTCTCCTTAGATGTGGAGATAATAATGGGATGA-------------------------------------
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>chr1A_1_TraesCS1A01G022900
TAGGCTGTGCATCCATCTGCTGCGGCATCCAATCAAATCAT---------------------------------------
-------------------------------GGTAAATTCACTGCCCCCTCTCTTCTTCTAGCCCGTTTTGTCTTGCTAC
TAATATTCTCTCCTTTTGGTTTTGCAGAGCCAAGATGCCGAGGACAGAATCAGTGCGCTCCCTAGGGACATCCTTATCCG
AATCCTTGAACTCCTTCCGGTGCGCAGTGCGATTCGGACCGGATCGCTCTCCAAACGGTGGAGACACCTCCCTCACCAGC
TCTCTTGTCTGCTCATAGGTGTATCTGACATTCAGAGCGCTAGCTACGTCACGCTGGGTCAGATCATGGGGGCGTACACG
GAGACGACGAGGAGATTGCTATCGTCCACGTGCGAATGCGGCGGCCGTTCCATCAAGAGCCTGAGACTTA----------
------------------------------------------------CCTTTTACCTTTCAAAACTTTTCTTGTGCCCT
ATTGGCCATGCCGTCGGGGATGTGGCCAGGAACGGCGACACTGAATGCCTCGAGTTTGTGATATTCACGCATCTTGCGAG
ACCAAGCAATGCTCAACTTGTCTTGTTTGGACAGCGGTTCATGTCCTTCTTCCACTCTTGCCCTGTCGCCTTCAGATGGC
TCACAAGACTAACTCTCCACAACCTTGCATTTGGAGACTCGGATGTCCCCAATCTCCTCAATGCTTGCGATAAGCTTCAG
TTCCTTAACTTGAGATGCTGCAAATTGGGTCCGAAATCTGTCCTCAGCATAGACGCCCTGTCATCAGAGCTCCAGAAACT
TGAATTGTTTTGCTTTGAGTGTGTGCGGGTTGATCTAGCAAGTCTTCCTAAGCTGAAGCAAGTGCTCTGTGATACTTGGT
GGGCTGTG----ACCACACCTATGTCGATCTTGTGGCTTTGTTCCCCAACTTGAGAAAGTAAGCCTCGCCTCTGCTGCCC
TGTCTGGGCAGAAGCCATTCACATTGAGCAAGTGTTTATCTAGTAGTAGTACAAGAAGCCTCTCGACTTTGTGTCTGGAT
TTTTGCTCTCAGATGGTAAGTTTCTACTGCTACAACTCACTCTGCGTCTATGCCTTGTTCATCTATTATTTCAATGT---
---ATATATACACATTGCTACACGTCTCATG-CATGCTCCATATTTGTTTTTTTACAAGTGCAGATCTGGATTCAACCGG
AAGATCCTAAACAGCTCACACGTATATTCAGTAGCCTTAGAGATGTTTATATCTACAATGTCTTTGCTGAGTGTGATTTG
AATTGGACATTCTTTATCCTTAAAGCTGCACCTTCACTGAAGAACTTCTATGTAAGTCTGTTAATTAAGATTTTCTATGC
CATTTGCCCACTTGATATT-TTTTTTCTTTGACATGTTTATGCATTTTCAGCACTAACTATATACCAGCATGCCACTAAC
GCTCTTCTGTCACCAATAATAAAGATGAGAGCAGGGTATGTGCAAGTGTAAATAGTTAGTTTTATTGCAAACAAAAGCAC
TTGTGGAAAATAAGTTAGTTGTATTGCACAAGCTAGAACACAAGGCAAACACACTCAGTCACTCGCAGCTTTAACGAAAG
GTACTACATGCCGCATTGGGATGTAGGCAATATGAGATTCATTAAATGATATCATTGACAATGCAATGCAAAAAGGTAGA
AATTCTTAAACATGGATTTTCTTGGGAGAGAATTTCCATGCAAGATAATGTTAGAATTCCTTCAAATTTCTACAGATCAT
GATATAATTGCATAGGTACCATATACAGCGTCATTCCTGTTTCAGAGAGCTGTATGCAGATTCCCCTAAAACCATATGAG
GGCCTATCTTTAAATACTAATATGAAGCTCAATGCATTTTTTTGAATAGTACTCCCTCCGATA-TTGATGCAGGTTTAGT
ACAACTTAGAACTAAAGTTGTGCTAGAGCAGCATCAATTAATATTGATTGGAGGGAGTAGTACATTTACTTGTAAGTTTT
TGTAGCTACCGATCTGTCGCTGTACTGCATCTTGAAAACTAGTATTGAGGTTGATGCTGATTTTATATGTAATATTTGCC
GTTTCTTTTGTTGTTGGGTCCATGCAGTTATCTCGACACTCTTGTGAACCCAACAAGTTTGAGGATATTGCCAAGAAGAC
CGACTTGGTGTGGGAAACCTCCAGTTTCAAGCATTTGAACTTGAAGCTGCTGTTCATGAAAGGGTTTTCGGAGGATGAGA
AGGTGATGAACTATATAAGACTTGTCATGAAAAGATCTATGGGCTTGAAGAGAATCGAACTGCATGATAAAGACCCATGT
GAGGAGTGCAAAGCCATATCCCCCGAGTGTTTAAGGTTTCCTGTGGATGAATCTAGCAAGCGTCGGATTAAGGAGCAACT
CACATATGGATTCTCCTTAGATGTGGAGATAATAATGGGATGATGCATATAATCAAGCAGTGCGCAGAACCAAGTTAGTT
GCTTAGCACGCCCATTAACAAGGGATATATAT------AGAGAGAGAGTAGGTGCGAGCATATGTAGGCTTACTTTTT--
------CAGAGACATGGTGAGTGCCCATGTGTTGCAACAGGAGCCAAAAAAAATTCATGTTTACAA----GGTATTGGGT
TAAACTAACACCTGTTATTGTAATTTTTTACACACATATTTAGTAGGTCAATGTGTAGAACTTAGCTCATTTGACATGCA
TGGGACCCAGACAATGGATATCAAAGCAACAGCAAATGCAACCATGTGAGCATCATACTAGTAACGGTCTAAAATAAAAT
TCATTTTTAAATATTATCCTTCCAAACAAAATGTAATGGCTGGTTATTGAAAGTGCACAAGAAGTTGCAAGCGAGAATGA
AAAAGCATGTGTATATGCGTTCCAGCAACAAAGCATATGCATAAATACATTGATTATGCCTTTTTATGTAAAAAAAATCT
TTACAAATTGAACATTACAAGTCCAAAATAAAAAGAAAACAGAAGTGACACCAAACATATTTTTCAAAGTGTTAACTAAG
ATTTGATAATCCACAAGGGACCTATCCATAATGTAGCCGGGCAAACAGTATTGTGGTAGACAGTCATATCAACGGTTATT
ATGCCGATCGCCCCAATATCGCGACTCTGCAAGAGTTGCTCCTGTTACCTAATCTCACAGAAGACACGTAATAGGTAGAA
CATATTTTGGAGATAACTTGGGCCTCTTTGATTCACAGGGTTTTCAAAACGTAGTAGCAACAGAAGTATAGGATTTGAGT
GGCGTGCCCACTTGAATACTAAAGGATTAGCAAAGGAGTGCTTGATGCCACAAGAGAAACAAAGAAATTGTAAAGAGGTT
GAAGTAGATGTTAGATTTTCTATGAAATGTAGTACAAAAGATTTCATAGAAAAAATTCCTATGGGATCCAATCCTATAAA
TCAAAGAACCAACGTAGGAAA
>chr1B_8
-------TGCATCCATCTGCTGCGGCATCCAATCAAATCAT---------------------------------------
-------------------------------GGT----------------------------------------------
--------------------TTTGCAGAGCCAAGATGCCCAAGACAGAATCAGTGCGCTCCCTAGCGACATCCTTATCCG
AATCCTTGAACTCCTTCCGATGCGCAGTGCGATTCGGACCGGATCGCTCTCCAAACGGTGGAGACACCTCCCTCGCCAGC
TCTCTTGTCTGCTCATAGGTGTATCGGACATTCAGAGCGCTACCTACGTCACGCTAGGCCAGATCATGGGGGCGTACACA
GAAACGACGAGGAGATTGCTATCGTCCACATGCGAATGCGGCAGCCGTTCCATCAAGAGCCTGAGACTTA----------
------------------------------------------------CCTTTTACCTTTCAAAACATTTCTTGTGCTCT
ATTGGCCATGCCGTCGGGGATGTAGCCAGGAACGGCGACACTGAATGCCTCGAGTTTGTGATATTCACGCATCTTGCGAG
ACCAAGCAATGCTCAACGTGTCTTGTTCAGACAGCGCTTCATGTCTTTCTTCCACTCTTGCCCAGTCGCCTTCAGATGGC
TCACAAGACTAACTCTCCACAACCTTGCATTTGGAGACTCGGATGTCCCCAATCTCCTCAATGCTTGCGATAAGCTTCAG
TTCCTTAACTTGAGATGCTGCAAATTGGGTCCGAAATCTGTCCTCAGCATAGACGCCCCGTCATCAGAGCTCCAGAAACT
TGAATTGTTTTGCTTTGAGTGTGTGCGGGTTGATCTAGCAAGTCTTCCTAAGCTGAAGCAAGTGCTCTGTGATACTTGGT
GGGCTGTG----ACCACACCTATGTC----TTGTGGCTTTGTTCCCCAACTTGAGAAAGTAAGCCTCGCCTCTGCTG-CC
TGTCTGGGCAGAAGCCATTCACATTGAGCAAGTGTTTATCTAGTAGTAGTACAAGAAGCCTCTCGTCCTTGTGTCTGGAT
TTTTGCTCTCAGATGGTAAGTTTCTACTGCTACAACTCACTCTGCGTCTATGCCTCGTTCATCTATTATTTCAATGT---
---ATATATACACATTGCTACACGTCTCATG-CATGCTCCATATTTGTTTTTTTACAAGTGCAGATCTGGATTCAACCGG
AAGATCCTAAACAGCTCACACGTATATTCAGTAGCCTTAGAGATGTTTATATCTATAATGTCTTTGCTGAGTGTGATTTG
AATTGGACATTCTTTATCCTTAAAGCTGCACCTTCACTGAAGAACTTCTATGTAAGTCTGTTAATTAAGATTTTCTATGC
CACTTGCCCACTTTATATAATTTTTTCTTTGACATGTTTATGCATTTTCAGCACTAACTATATACCAGCATGCCACTAGC
GCTCTTCTGTCACCAATAATAAAGATGAGAGCAGGATATGTGCAAGTGTAAATAGTTAGTTTTTTTGCAAACAAAAGCAC
TTGTGGAAAATAAGTTAGTTGTATTGCACAAGCTAGAACACAAGGCAAACACACTCAGTCACTCGCAGCTTTAACGAAAG
GTACTACATGCCGCATTGGGATGTAGGCAATATGAGATTCATTAAATGATATCATTGACGATGCAATGCAAAAAAGTAGA
AATTCTTAAACATGGATTTTCTTGGGAGATAATTTCCATGCAAGATAATGTTAGAATTCCTCCAAATTTCTACAGATCAT
GATATAATTGCATAGGTACCATATGCAACGTCATTCCTGTTTCAGAGAGCTGTATGCAAATTCCCCTAAAACCATATGAG
GGCCTATCTTTAAATACTAATATGAAGCTCATTGCATTTTTTTGAATAGTACTCCCTCCGATATTTGATGCAGGTTTAAT
ACAACTTAGAACTAAAGTTGTACTAGAGCAGCGTCAACTAATATTGATCGGAGGGAGTAGTACATTTACTTGTAAGTTTT
TGTAGCTACCGGTCTGTCGCCGTACTGCATCTTGAAAACTAGTATTGAGGTTGATGCTGATTTTATATGTAATATTTGTC
GTTTGTTTTGTTGTTGGGTCCATGCAGTTATCTCGACACTCTTGTGAACCCAACAAGTTTGACGATATTGCCAAAAAGAC
CGACTTGGTGTGGGAAACCTCCAGTTTCAAGCATTTGAACTTGAAGCTGCTGTTCATGAAAGGGTTTTCGAAGGATGAGA
AGGTGATGAACTATATAAGACTTGTCATGAAAAGATCTATGGGCTTGAAGAGAATCGAACTGCATGATAAAGACCCATGT
GAGGAGTGCAAAGCCATATCCCCCGAGTGTTTAAGGTTTCCTGTGCATGAATCTAGCAAGCGTCGGATTAAGGAGCAACT
CACATATGGATTCTCCTTAGATGTGGAGATAATAATGGGATGATGCATATGATCAAGCAGTGCGCAGAACCACGTCAGTT
GCTTAGCACGCCCATTAATAAGGGATATATATATAGAGAGAGAGAGAATAGGTGCGAGCATATGTAGGCTTACTTTTTGA
CTTTTTCAGAGACAAGGTGAGTGCCCGTGTGTTGCAACAGGAGCC-AAAAAAATTCATGTTTACAATCAAGGTATTGGGT
TAAACTAACACTTGTTATTGTAATTTTTTACACACATATTTAGTAGGTCAATGTGTAGAACTTAGCTCATTTGACATGCA
TGGGACCCAGACAATGGATATCAAAGCAACAACAAATGCAACCATGTGAGCATCATACCAGTAACGGTCTAAAATAAAAT
TCATTTTTAAAGATTATCCTTCCAAACAAAACGTAATGGCCGGTTATTGAAAGTGCACAAAAAGTTGCAAGCGAGAATGA
AAAAGCGTGTGTCTATGCGTTCCAGCAACAAAGCATATGCATAAATACATTGATTATGCCTTTTTATGTAAA-AAAATCT
TTACAAATTGAACATTACAAGTCCAAAATAAAAACAAAACAGAAGTGACACCAAACATATTTGTCAAAGTGTTAACTAAG
ATTTGATAATCCACAACAGACCTATCCATAATGTAGCCGGGCAAACAGTATTGTGGTAGACAGTCATATCGACGGTTATT
GTGCCGATCGCCCCAATATCGCGACTCTGCAAGAGTTGCTCCTGTTACCTAATCTCACGGAAGACACGTAATAGGTAGAA
CATATTTTGGACAT------------------------------------------------------------------
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---------------------
>chr1A_10
---------CATCGATCTGCTGCGGCATCCAATCAAATCATGGTAAATAAAAATTCACCACCCCCTCTCTTCTTCTAGTC
CGTTTTGTCTTGCTAGACATATTCTCCTTTTGGT----------------------------------------------
--------------------TTTGCAGAGCCAAGATGCCCAAGACAGCATCAGTGCGCTCCCTAGCGACATCCTTATCCG
AATCCTTGAACTCCTTCAGATGCCCAGTGCAATTCAGACCGGATCGCTCTCCAAACAATGGAGACACCTCCCTCACCAGC
TCTATTGTCTGCTCATAGGTGAATCTGACATTCAGAGCGCTAGCTACGTCACGCTGGGTCAGATAATGGGGGCGTACACA
GAAACGACGAGGAGATTGCTATCGTCCACGTGCGAATGCGGCAGCTGTTCCATCAAGAGCCTGAGACTTACTCCCTCCGT
TCCAAATTACTCGTCGTGGTTTTAGTTCAATTTTGAACGGAGGGAGTACCTTTTACCTTTCAAAACCTTTCTCGTGCTCT
ATTGGCCATGCCGTCGGGGATGTGGCCAAGAACGGCGAGACCGAATGCCTCGAGTTTGTGATATTAACGCATCTTGCGAG
ACCTAGCAATGCCCAACTTGTCTCGTTTGGACAGCGGTTCATGTC--TCTTCCACTCTTGCCCTGTCGCCTTCAGATGGC
TCACAAGACTAACTCTCCACAACCTTGCATTTGGAGACTCGGATGTCCCCAACCTCCTCCATGCTTGTGATAAGCTTCAG
TTTCTTAACTTGAGATGCTGCAAATTGGGTCGGAAATCTGTCCTCAGCATAGATGCCCCGTGCTCAGAGCTCCAGAAACT
TGAATTATTTTGCCTTGAGTGCGTGCGGGTTGATCTAGTAACTCTTCCTAAACTGAAGCAAGTGCTCTTTGATACCTGGT
GGGGTGTATGTAACCACACCTGTGTG----TTGTGGCTTTGTTCCCCAACTTGAAAAAGTAAGCCTCGCCTCTGCTGCCC
TGTCTGGGCAGAAGCCATTCACGTTGACCAAGTGTTTATCCAGTAGTAGTACAAGAAGCCTCTCGACTTTGTGTCTGGAT
TTTTGCTCTCAGATGGTATTTTTCTACTGCTACAATTCCCTCTGCGTCTATGCCTTGTCCATTTATCATTTCAATGCAAA
TGCATATATACACATTGCATCGCTTCATGTCTCATGCTCCATAATTATTTTTTGC----TGCAGATATGGATTCAACCGG
AAGATCCTAAACAGCTCAAACGTATATTCAGTAGCCTTAGAGATGTGTATATCTACAATGTGTTTGCTGAGTGTGACTTG
AATTGGACTTTCTTTATCCTTGAAGCTGCACCTTCGCTGAAGAACTTCTACGTAAGTCTGTTAATTAAGGTCTTC-----
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>SNPs
SSSSSSS-------------------------------------------------------------------------
----------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS-------------------S-S-----------------------S--------------
-------------------S------------------------------------------------------------
-------------------------------------------------------------------------------S
--S---------------------------------------S-------------------------------------
------------------------------------------------------------------S----------S--
--------------------------------------------------------------------------------
---------------------------------------------S----------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------S---------------------
--------------------------------------------------------------------------------
--------------------------SSSS--------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--S----------S----S-----------------------------------------------------------S-
-----------------------------------S---------------------------S----------------
--------------------------------------------------------------------------------
-----------------------------------------------------------S--------------S-----
-----------------------------S-------------------------------S------------------
------------------------S--S------------------------------S---------------------
-------------------------------S----------------------------------------------S-
---------------------S----------S----S----------S-------------------------------
-----------S--------S---------------------------------------------------------S-
----S---------------------------------------------------------S-----------S-----
----------------------------------------------------------------------S---------
--------------------------------------------------------------------------------
---------------------------------------------S----------------------------------
--------------------------------------------------S---------------------S--S----
------------------S----------------------------S--------------------------------
--------------S-----------S------------------S----------------------------------
-----------S--------------------------------------------------------------------
-------------------------------S--------------------------S---------------------
-----------S-------------------S--------S-------------------S-------------------
------S-----S-----------------------------------------------------------S-------
----------------------------------S---------------------------S-----------------
----------------SS----------------------------------------------------S---------
S---------------------------------------------------------S---------------------
-----------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS
>forward_140
--------------------------------------------------------------------------------
----------------------------------------ACTGCCCCCTCTCTTCTTCT--------------------
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>reverse_2092
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-----------ATCTGTCGCTGTACTGCATCT------------------------------------------------
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>forward_226
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----------------------------------------------GAATCAGTGCGCTCCCTAGG--------------
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>reverse_2165
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----CTTTTGTTGTTGGGTCCATGCA------------------------------------------------------
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>forward_2101
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-GTAGCTACCGATCTGTCGCT-----------------------------------------------------------
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>reverse_3349
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--------------------------------------------------------------------TAGGATTTGAGT
GGCGTGCC------------------------------------------------------------------------
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---------------------
