>input_sequence_53037
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---------------------------------------------ATGAATCCCCTTCCGGCCGCCTCTGATGTTACGGA
GAGCGTGCCCGACGCCGATGGAGCCAGAAGCGTGCAGG---------CTCGAATCGCCCGCGGACCGCCGTCCCAAAGAA
CATTCTCTACCTGCGATTCTCAGGTATGCAAAGAGAAGATCCTGATCTGTTACGATTATTTTTAGTTCTATCTTTCTGTT
TTTTTAGTTCTATATCCTTCTTTGCGAATAAATTTTAGCTACATCTAGATGGACGAATTCGTTAGTTTTAATTTTTTTCG
CAGAAGTTGATCGACCTCCGGGGATTAGTTGGGCTGATTGACGTCGCCCGTTCCCCAGGTGGTTCCGGTCCTGTGATCCG
CATCGCCGGTACTAGTTCTCTTGGCCACGCCATCTACAAGAAGGCACCACGGGAGCTCCCGGGGCTGATTGACGTCGCCC
GTTTCCGAAGAGGTTCCGGTTCCGTGATCCAGCGGCCGCAGCTGCCACCGCCGCGCTGGTCCCTCAGAGATTCCTTAAGC
GACCCCCTCTTCGAGATTTTTGCGGTATATACGCATTTCCCTCTCATTGGCGAAGTATTGGTCTTCAATGGCATGGCCAC
ACAGATCATCTGCCAGAGCAAGAGTGTGGATGCGTTTAATTCAAGCAAAGCGCAATGGGAATTAAAACATCCCAGATCTA
AACATGTTTTCAGGGTATGTTCTTACTAACTTCCTAATTTCTGGGGGAATCCAGTTGGTATGCGATTCACATATATGCAT
GTATGCAGATGGAGCTGCCTCCTACGGGGCCATCAAGGTACATCTCAGCCGAATCAGGCGTTCTCCTTCAAGTGAAGATT
GACCCAACTGAGAATGAACCTGTGGAGGTATCCAACAAGCTGGTCGATTGGTTCAATTCGCCCATGTCTGACAAATGCAA
CTCTGTCACCATCCAAACACGCAAAGGCAAAGTAGATGTGTTATGCGCGGTGATAAATGATGCTGTGGAGGTCACCCTGA
GTGTATGGCTGTGCATACCTTGTGAGCTATGCTCCAATAGCATACACGGTTCCATCACCGCGCACACAGACATATTTCAT
CGTGATATCACCATATTCACCAGAGGTGCCAATTCAGGTGTTAATCCTCTACAGCGTGTTGCCCATCCAGTACCGCCCTT
TCTCTGCGATGAATCGCACCGCCATGTGTGCCTCCCATTGGTGCGGCCTTTCCTTGCCGTGCCTATTCAAGCGACTCGCT
TAGAGTTTAAGGGGTCCCTAACGATAGGGAAATCCAAAACACTGAGTATCAAGGAAACAGTTCTTCTCAATGCAGAGGAT
ATTTCGAGCCAGTGGTTCAAGCATGAAGATGAAGATTGCTATACTAGGCTGTCCCTGTCTATTAGGTGGGCTCGCTAG--
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>chr3B_1_TraesCS3B01G381800
GGCAGCGCAGAGAATCCCGGGAAAGAATCTGTGGTGCGTTTTTTGTAGGCAAAAGAAAGAAACTGCAGTGGAGAAGAAGA
AGCGGTGCGGTCGGGCCAGAGCAGTGGGCCTTCAGAGAAACTGAAGCTGTGTGGTGCAGAAACGAAACAGAGAGAGTTAA
ATTTCAGGAATAAATAGCGTATTTGGAATTGATGATGTGGCTAGACTGTTGAGGTGGACTGAGGTGAATGGCTGCATGTA
GATTGCTGATGTGTATAGCTTGCATGTCAAGAGAAATCAGGTAGTGGAGAGCTCCTATTTAGATATAGTAGATTTAAAAG
TGTTACAACAACTCTGTGCACTTGCAGGTCATCAAGCAACTGTGTGAAGCTAAACGTGGATGA-GCTTTTGACCCAGACT
TACTTAAGGGCTCGTATGGAGCGGTAATCAGACACTCGAATGGCAGATTCGTAGTGGTAGAAAAGGGC-AAATCGATTGG
TGCGGAGGTACGTTTATGGCCAAGGCACTGGCCT----------------TATGATTCGTTCTCAGTTTGACAACTATGG
TCGAATGTAACTGCATAGATGTGAACTTCGACAACATCGAGATGATAAAGACAATAAAGAATGAATGTTG--CTTTTGGT
CTATCGGCGGCAATTTTTAATGATATATATCACATTGCGTTTGATTTCTCTCGCATTA-TTTTGA-GTATGCTCATGG--
AGACTAATTGTGCTGTTCATAATTTAGTTAAATTAGCTAGAAGTAAGATGCGTGCAGGATGGATGGAAGATCCGCCCGTA
GAGAATGTTGATATTTTTATAAAGGATAATATGGTGATCACCTTGCAATAAAGA-TACTTTAATGTAAGAAAAAAAAA--
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----------------------------------------------------------AGATAAATTTGACGTGTCCGGA
TAAGGACGAAAACTGAGCCGGACTCAGACTACAGCACCGTCCCAATTCCCAAATAAAAAGGGCCAGCCCGGCAGGACGGC
AACCAAACCAGTGCCGGCTCGAGGGCTTCTAGGTTTGGATACGCGATGAATCCCCTTCCGGCCGCCTCTGATGTTACGGA
GAGCGTGCCCGACGCCGATGGAGCCAGAAGCGTGCAGG---------CTCGAATCGCCCGCGGACCGCCGTCCCAAAGAA
CATTCTCTACCTGCGATTCTCAGGTATGCAAAGAGAAGATCCTGATCTGTTACGATTATTTTTAGTTCTATCTTTCTGTT
TTTTTAGTTCTATATCCTTCTTTGCGAATAAATTTTAGCTACATCTAGATGGACGAATTCGTTAGTTTTAATTTTTTTCG
CAGAAGTTGATCGACCTCCGGGGATTAGTTGGGCTGATTGACGTCGCCCGTTCCCCAGGTGGTTCCGGTCCTGTGATCCG
CATCGCCGGTACTAGTTCTCTTGGCCACGCCATCTACAAGAAGGCACCACGGGAGCTCCCGGGGCTGATTGACGTCGCCC
GTTTCCGAAGAGGTTCCGGTTCCGTGATCCAGCGGCCGCAGCTGCCACCGCCGCGCTGGTCCCTCAGAGATTCCTTAAGC
GACCCCCTCTTCGAGATTTTTGCGGTATATACGCATTTCCCTCTCATTGGCGAAGTATTGGTCTTCAATGGCATGGCCAC
ACAGATCATCTGCCAGAGCAAGAGTGTGGATGCGTTTAATTCAAGCAAAGCGCAATGGGAATTAAAACATCCCAGATCTA
AACATGTTTTCAGGGTATGTTCTTACTAACTTCCTAATTTCTGGGGGAATCCAGTTGGTATGCGATTCACATATATGCAT
GTATGCAGATGGAGCTGCCTCCTACGGGGCCATCAAGGTACATCTCAGCCGAATCAGGCGTTCTCCTTCAAGTGAAGATT
GACCCAACTGAGAATGAACCTGTGGAGGTATCCAACAAGCTGGTCGATTGGTTCAATTCGCCCATGTCTGACAAATGCAA
CTCTGTCACCATCCAAACACGCAAAGGCAAAGTAGATGTGTTATGCGCGGTGATAAATGATGCTGTGGAGGTCACCCTGA
GTGTATGGCTGTGCATACCTTGTGAGCTATGCTCCAATAGCATACACGGTTCCATCACCGCGCACACAGACATATTTCAT
CGTGATATCACCATATTCACCAGAGGTGCCAATTCAGGTGTTAATCCTCTACAGCGTGTTGCCCATCCAGTACCGCCCTT
TCTCTGCGATGAATCGCACCGCCATGTGTGCCTCCCATTGGTGCGGCCTTTCCTTGCCGTGCCTATTCAAGCGACTCGCT
TAGAGTTTAAGGGGTCCCTAACGATAGGGAAATCCAAAACACTGAGTATCAAGGAAACAGTTCTTCTCAATGCAGAGGAT
ATTTCGAGCCAGTGGTTCAAGCATGAAGATGAAGATTGCTATACTAGGCTGTCCCTGTCTATTAGGTGGGCTCGCTAGTG
TACACTCATGGTGCTCAGGTATGGCCTAAGATGGGTAATCAAACTACATATTTGTTGCTTTTGTTATAAATAAATGTCTA
GCGGTCTTGTTTGTAGTTCTAAGTAGATATATGGCAGGGATGCTTGGGATCTTTACTTGGGCCATGGCGCTGTCGGAAGA
TTGACAAGAGAGGTTTCTGCAAGTCTGGCAAAGTCGTTGTGTTATCCCAGCCTTGTATGATAAATTGTCTTATTAATAGG
TATGTGAGCGAGTGTTCAACTTGTAATCTGATAAAGTTTGCTGCTATGTAGTTTGATGTGTATCTTATTACTCGTATGTG
AGCAAATATTTAACCACAATGTGAGACCTGTAAGATACTCCCTCCGTCCGGAAATACTTGTCATCAAAATAGATGAAAAT
GGATGTATCTACAACTAAAATACATCTAGATACATCCATTTCAATGACAAGTATTTCGGGACGGAGGGAGTATATGATTT
GTCAGTTCTATCTTATCTCTGTTCATAATAGGTGCCACATAAGGTGGTTTCACTTAGCTTTGCTACTTTTTTTTTTGTGA
TCTCACTGTGCAGGGGTAAAAATCTCGCCTGAGTTTCATCTCTTTCTCCCGCATGTTCTCTTGCTTTCACATTCCTTAGG
ATAGATGAAAGCTAGAAATGGAAATTGGAACAAATTGTTTATGTCAGCGTTGAAACAATGTCCTATTTAACCATCACAGA
TTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTTTTTTGAGACAATTGTCGAATTGCAACTGAGAC
TTGAAGTTGGTATGGATTTCTTCTGGCACTAGAAAATG
>chr4A_317
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----------------------------------------------------------------------------AAAG
TGCTACAACAGCTCTGTGCACCTGCAGGTCATCAAGCAAGTATGTGAAGCTAAATGTGGATGA-GCTTTTGACCCAGACT
TACTTAAGGGCTTGTATGGAGCGGTCATCAGAAACTCG-ATGGCAGATTCGTCGTGGCAGAAAAGGGC-AAATTGATTGG
TGCCGAGATATGTTTATGACCGAGGTAGTTTTCAATGATATAGTCAGATTTACGATTTGTTCTCAGTTTGACAACTACAG
TCGGATGTAACCGCATAGATGTGAATTTCGACAACATCGAGGTGATAGAGACAATGAAGAATAGATTTTG--CTTTCGGT
CTATCAGCGGCATTTTTTAATGATATATATCACATTGCGTTTGATTTTTCTCATATTATTTTTCA-GCATGCTCCTAG--
AGACTAATTGTGCTGTCCATGATTTAGCTAAATTAGCTAGAAGTAAGATGCGTGCGGGATGGATGGAAGATCCGCCTGTA
GAGAATGTTGATACTTTTGTAAAAGATAATATGGTGATC-CCTTGCAATAAAGA-TACTTTGATGTACGAAAATGTTAAC
GCCCACACGTGTGGGTGTTTGCATCTCGCCCACACGTGTGGATCCGCATCCATTCGTGAGCGCACGAATCTTGGCATGTT
TCCAGTACCACGTAGGACTGGCCTGGTGTGTGGGCGTTTACACGGTCGCCCACACGGCCGTTTCGCCACACAGAAGGGGC
TGGTGTATGGGCGTTGAGAGTTCGCCCATACGCCACTTTCCACGCACACATAAGGGCTAGTGTGTGGGCATTTGCCATCT
CGCCCACACGCCCGTCTCCTCTCTCACACCTAAGCTGCTAGTTGCCATATGTTTTGCAGCGCACATGGCAACTGCCCTAG
TGTGCTTTATAAGCAGGTGACAACTCTCTTTTTACCCGAGTTGCCATGTGTTTTGCAGGGTACACGGCAACTGCCTAGTG
TGCACGTAAGCAGATGGCAACTCTCTCTTTACCGAGTTGCCATGTGATTTTGTATGGTACATAGCAACTGCCCTAACGTG
CACGTAAGATGGCAACTCTTCCTTTCTACATGACAACTGCCCTAGCATGCTTGTGAGCACATGGCAACTCTCTCAACTGC
CTAGTGTTAGTATGTGGCAACTTCTAAAATTTTGAAATCATGGCAACTACAGTAGATCAGACCATACATGACAACTGCAG
TTGAGCAACCATGGCAACTGCAAATCCGACATGGCAACCGTAGTTCAGCGACATGGCAACTGCAGTTGAACGAACATGGA
CGAGGGTCTGAACCATGGCAACTGCGGGCGCGCAGTGACTGTCACGCGTGCCGTGCGGGTCCACGAGGTACGAGGCCTGA
CATACGGGACGTGTGGGCGTTATCTACTTCGCCCACACGCACGCATGTGAGAGGGACCGGAAGGGGAAAAAAGAGGTGTG
TGGGCATTAGTTGTTTTGCCCACACGTAGGTATGTGGACTGTTCCTCTTATACACCACATAAAATGTGTGGGCAGTCTTC
CTAACGCCCACACGTGTGGCACTTATCGGCGTCCTTGATGTAAGAAAAAACAGATTAGAGATAAATTTGACATGTCCGGA
TAAGGGTGAAAACCCAGCCGGACTCAGACTACAGCACCGTCCCAATTTCCCAAATAAAAGGGCCAGCCCGGCAGGACGGC
AACCAAACCAGTGCCGGCTCGAGGGCTTCTAGGTTTGGATACGCGATGAATCCCCTTCCGGCCGCCTCCGATGGAACCGA
GAGCGTGCCCAACGCCGATGGAGCCACAAGCGTGCAGGAGGTTGTGCCTCGAATCGCCCTCGGACCGCCGTCCCAAAGAA
CATGTTCTACCTGCGATTCTCAGGTATGCAAGGAGAAGATCCAGATCTGTTACGATTTTTTTTAGTTCTATCTTTCTGTT
TTTTTAGTTC--TATCCTTCTCTGCGAATAAATTTTAGCTACATCTAGATGGACGAATTCGTTAGTTTTAACTTTTTTCG
CAGAAGTTGATCGACCTCCGGGGATTAGTTGGGCTGATTGACGTCGCCCGTTCCACAGGTGGTTCCGGCCCTCTGATCCG
CATCGCCGGTACTAGTTCTCCTGGCTACGCCATCTGCAAGAAGGCACCACGGGAGCTCCCGGGGCTGATTGACGTCGCCC
GTTCCCAAAGAGGTTCCGGTTCCATGATCCAGCGGCCCCAGCTGCCACCGCCGCGCTGGTCCCTCAGAGATTCCTTAAGC
GACCCCCTCTTCGAGATTTTTGCGGTATATACATATTTCCCTCTCATTGGCGAAGTATTGGTCTTCAATGGCATGGCCAC
ACAGATCATCAGCCAGAGCAAGAGTGTGGATGCGTTTAATTCAAGCAAAGCGCAATGGGAATTAAAACATCCCAGAACTA
AACATGTTTTCAGGGTATGTTCTTACTAACTTCCTAATTTCTGGGGGAATCCAGTTGGTATGCGATTCACATATATGCAT
GTTTGCAGATGGAGCTGCCTCCTACGGGGCCATCTAGGTACATCTCAGCCGAATCAGGCGTTCTCCTTCAAGTGAAGATT
GACGCAACTGAGAATGAACCTGTGGAGGTATCCAACAAGCTGGTGGATTGGTTCAATTCGCCCATGTCTGACAAATGCAA
GTCTGTCACCATCCAAACAAGCAAAGGCAAAGTAGATGTGTTATGCGCGGTGATAAATGATGCTGTGGAGGTCACCCTGA
GTGTATGGCTGTGCATACCATGTGAGCTATGCTCCAGTAGTATACACGGTTCCATCACCGCGCACACAGACATATTTCAT
CGTGATATCACCGTATTCACCAGAGCTGCCAATTCAGGTGTTAATCCTCTACAGCGTGTTGCCCATCCAGTACCGCCCTC
TCTCTGCGATGAATCGCACCGCCATGTGTGCCTCCCATTGGTGCGGCCTTTCCTTGCCGTGCCTATTCAAGCGACTCGCT
TAGAGTTTAAGGGGTCCCTAACGATAGGGAAATCCAAAACCCTGAGTATCAAGGAAACCGTTCTTCTCAATGCGGAGGAT
ATTTCGAGCGAGTGGTTCAAGCATGAAGATGAAGATTGCTATACTAGGCTGTCCCTGTCTATTAGGTGGGCTCGCTAGTG
TA------------------------------------------------------------------------------
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>chr6A_355
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----------------------------------AGCAACTATGCGAAGCTAAACGTGAATGGGGCTTTTGACCCAGACT
TACTCAAGGACCCTTATACTGCTATCATCAGAGACTCAAATGACAGATTCATCGTGGTAGGAAACGAAGAAATTGATTGG
TACCAAGATGCGGTTATGGCCGAGGCACTGGCCTTATG--------GTTTTATGGTTTGGTCTCAATTTGGCAAATACAT
TCGGGTGCAACCGCATAGAGGTGAACTCTGAAAACATCGAGGTGATAGAGACAATGAAGAATGGATGTCACTCTTTCGGT
CTATCGGCAGCAGTTTT---TGATATATATCACCTTGCGTGTGATTTTCCGCATATTA-TTTTTTGGCATGCTCCTAGAA
AGATTAATTGTGTTGCCCATGATTTAACCAAACTAGCTAGAAGTAAGGTGTGTGCGGGGTGGATGAAAGATCCACCCGTA
AAGATTGTTGATACTCTTATAAAAGATAATATGGTGATCACCTTGCAATAAAAAGTACTTTGATGTTAAAAAA-------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----
--S-------S----------S-------------------S--------------------------------------
-------------------------S------S-------------------S--------------------S------
---S---S-------------S-----------------------------------S-------------------SS-
---S-------S-----------------------------S-----S-------S-------S------------S---
------------S----------------------------------S----SS---------S---S------S-S---
----------------S---S------S---------------------------S------------------------
-------------S---------S-------------------------------------S-----------SSSS---
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-----------------------------------------------------------------------S--------
-----SS------SS--------------------------------S--S--SS-------------------------
--------------------------------------------------------------------S----SS--S--
----------S---------------S--------------------------------S--------------------
---SS--------------------------S----------S--------------S----------------------
----------SS---------S-------------------------------------------------S--------
------------------------------------------------------S-------------S---S-------
--------------------S----S---------S--------------------------------------------
---S--S----------------S-------------S------------------------------------------
--------------------------------SS----------------------------------------------
----------S-----------------------------------------------------------------S---
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--S-------------------------------S---------------------------------------------
---S----------------------------------------S-----------------------------------
S------------------S------------------------------------------------------------
-------------------S----------------S---S---------------------------------------
------------S------------S-----------------------------------------------------S
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----------------------------------------S-----------------S--------------S------
---------S----------------------------------------------------------------------
--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_239
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-----------------------------------------------------------TGAGGTGAATGGCTGCATGT-
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>reverse_2593
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--------------------------------GCATTTCCCTCTCATTGGCG----------------------------
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>forward_2165
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-----------------------------------------------------------------CGCCGTCCCAAAGAA
CATTC---------------------------------------------------------------------------
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>reverse_3795
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----------------------------------ATACTCCCTCCGTCCGGAAA--------------------------
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