>input_sequence_52996
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-------------------------------------------------ATGTCGCAGGAGGAGGTCCACGACGCCGGCC
TGGCGCTGGGCCTGTCCCTGGGCGGCGGGGGCGGAGGCGGAGGCGACGGGCCGTCGTCGGCGCACCGCAGCAG---CAAC
AGCGGCCGGCTGACCCTGTGGGAGGC------------GGAGCCGTCGCTGACCCTCAGCATGCCGGACGACACCACCAT
GACCGGCACCGCGTCCGGCGGCGTGTCGTCCATGTCGGTGGGGGGCGCGGTGAAGAGGGAGCGGGCCGAGGAGGCGGACC
TGGGCGAGATGGTATCGTCCACGGCGGTGGGCGCCGAGGAGGACGACGACGGCAGCACGCGGAAGAAGCTGAGGCTGACC
AAGGAGCAGTCCGCCCTCCTGGAGGACCGCTTCAAGGAGCACAGCACCCTCAACCCGGTACGTACGTTCG------T---
-ACGTACGCATGCGTACTAGTCACGTTCGAATCGATTCACCGCTACTGATAGATGGCCGCGGATACCTAACATGCATCAT
CTTTCATCTGTTGAGATCTTCTTCTCTATTTATGCATGCGCGTAC---GCATGCCTCCT-----------C---AAATCT
GGTTTTTACTTTCTTGATCCAT----------------------------------------------------------
AGTATGAGCTGCTGAATCAAAAATAAAAATGTGTTACTGAACT----TTTTTTCCTTTGTGTGTCCTTTTTGGATTTGAG
CAGAAGCAGAAAGTGGCTTTAGCCAAGCAATTAAACCTCAGGCCAAGGCAGGTGGAAGTCTGGTTCCAGAACAGAAGAGC
CAGGTTAGGAGCCTTGTATTATACACGAGTATATGTCTATATGATATTGGCACCCCAGC----TTACGGTCTCCTGCTAG
AGCTGACTTGAAACAATTAATCCTTGTATTATACACCTCTTCATCTTTCTCAAAAA--AAAAAACACACGGGCAATCATT
TTGTGTG-------TTGCACTCCCATCTCAATTCATTTTGTTTTACGTCCATGCATGCATGAAAAATTAGCGAGA-CCTC
TCCCTAAAATTACGGGTCGTTTCAGTTGTGTTGGTGAACTTTTTGTAA-AACTAACGTTGGATCCCGTT---CACGTGCA
TGCAGGACGAAGCTGAAGCAGACGGAGGTGGACTGCGAGTTCCTGAAGCGCTGCTGCGAGACGCTCACCGAGGAGAACCG
CCGGCTGCAGCGGGAGCTGCAGGAGCTCCGCACCATCAAGTTCGCCCCGCCGCCA---CCGCCCAACAACGCCAGCCAAC
ACCCCGGGACGCCGTCCTCCGCCGCGGCCCCGCCGGCGCCGTTCTACATGCAGCTGCCGGCCGCCACGCTGACCATCTGC
CCGTCCTGCGAACGCCTGGGCGGAACCGCCGCCACCGCCGCCGGCAAGGTCGACCCCGACAGGCCCAAGGCTGCCACCCA
CCACTTCTTCAACCCCTTCACCCACTCCGCCGCCTGCTGA----------------------------------------
--------------------------------------------------------------------------------
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>chr4D_1_TraesCS4D01G236600
ATATGGTTGGGTGGGTGCATGATGAGTCGTAATATTTGTGCCACAAGCGCATCCATCTCCACCACAATCATTTGTGCAAA
TACCTAACAATTATCGAGC----------------CATGCATGCATGATCATCATGTGAAATATA-CTTGTACTAGAACC
AAAGCGGGAG--------GTCCGTACCTGAACGGATGAGTC------TATTATATCTATACACGTA--------------
--------------------------------------------------------------------------------
-------------------------------CGTGCGTACCTAACTGATCTAGAACGCGCCCACCCTCGGTG-----AAC
AGAACAGTAGTAGCAGCAAGCAAAAAAGAAACGGAGGATCTGCTGCAT-----GTCTCACCTTTTGTAACGCCTACATGC
ATGCGTGTGGGCACAA-GGGGCCGAGCGAGCGAGGCTGATGTGTGCGTGCGGCTTCTAATATTGCCGGCCCCTTTACACA
CGCGCGTCCACGCGGCACCCCTAATCATCCATCCATACCAGCAGCACGAGAAAAACCTAAAAGAAAAACCCGACTTTTGA
GCAGCAGCGATGGCTGGCTGCTGAGAACGGGATGAAAAATATGCACATCTGTAGGAGGGAACACGCCCAGA----GAGAG
GGAGGGAGACGGAGGGCGCAGCACGGCACTCTGGTCTG----TGGAGTCTGGACCCTCCCGGCGCGAGGGGTCGATCTCC
CTGCTGCC------TGTGCTGGGCTTGTCAAACATTCGCAAGTGTCGAGTGCGCGTGCGCGTACGCCCGTGTGATGTGGG
TTTGCATCGCCTTGTCCCCCCCGGGCGGCTCCACACCTCCCTCCCTCGCT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------CCTCTTCCTCCTCAAATATTCTCAACCCCTCGGCCTCAACCAATTCATTCCCCTCACTC
ATTCCTTCCTTCCTCCCCTCCCCTCCCCTCTCCTCTCCTCACCTCTACTACACAGACGCGTGAATACACTTCCGCGGCAC
CCTGCAAGAACTGCGAGAGGATTCAAGTCGGCGC---------------AGATAGACAAGATA--GTTTGCTGGTTCTTG
GGTCAAGCTAGCTAGAGACCATTGGCTCTGCCGATTTGTGCGCCACGCCATGTCGCAGGAGGAGGTCCACGACGCCGGCC
TGGCGCTGGGCCTGTCCCTGGGCGGCGGGGGCGGAGGCGGAGGCGACGGGCCGTCGTCGGCGCACCGCAGCAG---CAAC
AGCGGCCGGCTGACCCTGTGGGAGGC------------GGAGCCGTCGCTGACCCTCAGCATGCCGGACGACACCACCAT
GACCGGCACCGCGTCCGGCGGCGTGTCGTCCATGTCGGTGGGGGGCGCGGTGAAGAGGGAGCGGGCCGAGGAGGCGGACC
TGGGCGAGATGGTATCGTCCACGGCGGTGGGCGCCGAGGAGGACGACGACGGCAGCACGCGGAAGAAGCTGAGGCTGACC
AAGGAGCAGTCCGCCCTCCTGGAGGACCGCTTCAAGGAGCACAGCACCCTCAACCCGGTACGTACGTTCG------T---
-ACGTACGCATGCGTACTAGTCACGTTCGAATCGATTCACCGCTACTGATAGATGGCCGCGGATACCTAACATGCATCAT
CTTTCATCTGTTGAGATCTTCTTCTCTATTTATGCATGCGCGTAC---GCATGCCTCCT-----------C---AAATCT
GGTTTTTACTTTCTTGATCCAT----------------------------------------------------------
AGTATGAGCTGCTGAATCAAAAATAAAAATGTGTTACTGAACT----TTTTTTCCTTTGTGTGTCCTTTTTGGATTTGAG
CAGAAGCAGAAAGTGGCTTTAGCCAAGCAATTAAACCTCAGGCCAAGGCAGGTGGAAGTCTGGTTCCAGAACAGAAGAGC
CAGGTTAGGAGCCTTGTATTATACACGAGTATATGTCTATATGATATTGGCACCCCAGC----TTACGGTCTCCTGCTAG
AGCTGACTTGAAACAATTAATCCTTGTATTATACACCTCTTCATCTTTCTCAAAAA--AAAAAACACACGGGCAATCATT
TTGTGTG-------TTGCACTCCCATCTCAATTCATTTTGTTTTACGTCCATGCATGCATGAAAAATTAGCGAGA-CCTC
TCCCTAAAATTACGGGTCGTTTCAGTTGTGTTGGTGAACTTTTTGTAA-AACTAACGTTGGATCCCGTT---CACGTGCA
TGCAGGACGAAGCTGAAGCAGACGGAGGTGGACTGCGAGTTCCTGAAGCGCTGCTGCGAGACGCTCACCGAGGAGAACCG
CCGGCTGCAGCGGGAGCTGCAGGAGCTCCGCACCATCAAGTTCGCCCCGCCGCCA---CCGCCCAACAACGCCAGCCAAC
ACCCCGGGACGCCGTCCTCCGCCGCGGCCCCGCCGGCGCCGTTCTACATGCAGCTGCCGGCCGCCACGCTGACCATCTGC
CCGTCCTGCGAACGCCTGGGCGGAACCGCCGCCACCGCCGCCGGCAAGGTCGACCCCGACAGGCCCAAGGCTGCCACCCA
CCACTTCTTCAACCCCTTCACCCACTCCGCCGCCTGCTGATCGATCTGCGCTCCGCCGACCGCACGTACGTACATACACG
ACGCTCATCAACATCGACCTGCACCACCGCCATAGCTAGCTAGCTAGCTACAAGTAAGTAGCAGTGGCTGCCATAGCTAA
-----TACCTCACGTCGCAAGTAACATATGATCCTTGCAGCCAGCCAGCTGCAGGACATGGACATGGACACGATCCTCCT
--ACTTTTGCCATTTCTTGGTCTGGGGGTTTAGTCCCGAATCTTGTTCAGTTTAGCTAATCCATCCATCCATCAATCATA
GGCGCAATCCATAGACGATAGGTAGTCAAACA----GCCACCTGTAGTAGGCAGTAGCTAGTACTCGAAGCGGCCGGCCA
TTGTATATTCTTGTGCATGCA------TGTAACCGTGGACCTCTCCTTTTGGTTGGCTTCTCTGCCTTTTTGTGTTCAAA
AGCTGATCATCGGAGAGGAGA-TAATAGACTAAGCCGCCGCTGTGATGAACTAATTCCTAGTCGTGTCAGGCAGTGTTTG
GATGATGACATGAGAGAGGCTCTCC------------CTGTCGGGTGCGTACGTGTGTAATGTGTATACCTTTCTGACTT
TTTCTATATGCATATACGTTTCAATGATTGTGCCTGTCGGGCCTTAAACTTTACTTTGCCTCCCTGTTGCTTTCGCCTTT
GCTGGTTCATTTAATTGTTAATGGGAAAGCTTAGCCTCTCTTCTGCTCTTGCTTAACCATCTGTTCAGTTATGTTAA---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------TTGCACCGTTGTAAGTTGTA
ACCTCTACCTGGTTAACCAGGCCAATTTTCACACGACCACTCCGATTTGACTAGAAAGAAGCTCGGGGTATTGCCTGGTA
ATTAGTGACGTGCGGTTTCTGCTTCATCGTCCATCAGAGGTCGTTTTCAGTTAGATCGTTGAGTAATTACCTGGTAACCA
GAAAATAAGTCCTAGGACTTTTTTTAGTCCCAACTTATAAGTCCCAAGTCCCTACCTATTTGGTTCCTAAGACTTAACAT
GGACTAAAAGACC
>chr4B_1
ATATGGTTGGGTGGGTGCATGATGAGTCGCAATATTTTTTCCACAACCGCATCCATCTCCATCACAATCATTTGTGCAAA
TACCTAACAATTATCGAGC----------------CAT----GCATGATCATCATGTGAAATACTTCTTCTACTAGAACC
AAAGCGGGATGTGGATGTGTCCGTACCTGAACGGACGAGTC------TAT--CATCTATACACGTACTCCCTCCGTTTCG
AATTACTTGTCTTGGATTTGTCTAGATACGGATGTATCTAGACTTATTTTAATGCTAGATACATCCGTATCTAGACAAAT
CTAAGACAAGTAATTCGGAACGGAGGGAGTACGTGCGTACCTAACTGATCTAGAACGCGCCCACCCTCGGTGAACAGAAC
AGACTCGTAGTAGTAGCAAGCAAAAAAGAAACGGAGGATCTGCTGCAT-----GTCTCACCTTTTGTAATGCCTACATGC
ATGCGTGTGGGCACAA-GGGGCCAAGCGAGA----CTGATGTGTGCGTGCGGCTTCTAATATTGCCGGCCCCTTTACACA
CGCGCGTCCACGCGGCACCCCTAATCATCCATAA----CAGCAGCACGAGAAAAACCTAAAAGAAAAACCGGGCTTTTGA
GCAGCAGCGATGGCTGGCTGTTGAGAACAGGATGAAAAATATGCAGATCTGCAGGAGGGAACACGCGCAGGGAGGGAGAG
AGAGAGAGAGGGAGGGCGCAGCACGGCACTCTGGTCTG----TGGAGTCTGGACCCTCCCGACGCGAGGGGTCGATCTCC
CTGCTGCC------T--GCTGGGCTTGTCAAACATTCGCAAGTGTCGAGTGCGCGTGCGCGTACGCCCGTGTGATGTGGG
TTTGCATCGCCTTGTCCCCCCCGGGCGGCTCCACACCTCCCTCCCTCGCT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------CCTCTTCCTCCTCAAATATTCTCAACCCCTCGGCCTCAACCAATTCATTCCCCTCACTC
ATTCCTACCTTCCTCCCCACCCCTC----------TCCTCTCCTCTCCTACACAGACGCGTGAATACACTTCCGCGACAC
CCTGCAAGACTTGCGAGAGGATTCAAGTCGGCGCCTGGCAAGGCAGCGCAGATAGACAAGATA--GTTTGCTGATTCTTG
GGTCAAGCTAGCTAGAGACCATTGGCTCTGCCGATTTGTGCGACACGCCATGGCGCAGGAGGAGGTCCACGACGCCGGCC
TGGCGCTGGGACTGTCCCTGGGCGGAGGGGGCCGAGGCGGAGGCGACGGGTCGTCGTCGGCGCACCGCGGCAACAACAGC
AGCAGCCGGCTGACCCTGTGGGAGGCGGCGCCGTCGCTGGAGCCGTCGCTGACCCTCAGCATGCCGGAAGACACCACCAT
GACCAGCACCGCGTCCGGCGGCGTGTCGTCCATGTCAGTGGGGGGCGCGGTGAAGAGGGAGCGCGCGGAGGAGGCGGACC
TGGGCGAGATGGTGTCGTCCACGGCGGCCGGCGCCGAGGAGGACGACGACGGCAGCACGCGGAAGAAGCTGAGGCTCACC
AAGGAGCAGTCCGCGCTCCTGGAGGACCGCTTCAAGGAGCACAGCACCCTCAACCCGGTACGTACGTTGTACGTGCT---
-ACGTACGCATGCGTACTAGTCACGTTCGAATCGATTCACC---GCCGATAGATAGCCGCGGATACCTAACATGCATCAT
CTATCATCTGCTGAGA---TCTTCTCCATTTTTGCGCGCGCGTAC---ACATGCATACAAGCAAAATCGAC---AAATCT
GG--TTTACTTTCTTGATCTATGGTATTCTAGATACCTCTTTTTTATTCATTTTGATGACAAGTATTTCCGGACGGAGGG
AGTATGAGCTACTGAATCAAAAATAAAAATGAGTTACTGAACAGCTTTTT-----TTTGGGTGTCCTTTTTGGATTTGAG
CAGAAGCAGAAAGTGGCTTTAGCCAAGCAGCTAAACCTCAGGCCAAGGCAGGTGGAAGTCTGGTTCCAGAACAGAAGAGC
CAGGTTAGTAACCTTGTATTATACGCGAGTATATGTCTATATGATATTGCCACTCCAGC----TTACAGTCTCCTGCTAG
AGCTGACTTGAAACAATTAATCCTTGTATTATACACCTCTTCATCTTCTCAAAAAATTAAAAAATACACGGGCAATCATT
TTTGTGTGTTGCACTTGCACTCCTATCTCAATTCATTTTCTTTTACGTCCATGCATGCATGAAAAATTAGCGGAACCCTC
TGCCTAAAATTACGGGTTGTTTCAGTTCTGGCGGTGAACTTTTTGTAT-AGCTAACGTTGGATCCCGTGTTACACGTGCA
TGCAGGACGAAGCTGAAGCAGACGGAGGTGGACTGCGAGTTCCTGAAGCGCTGCTGCGAGACGCTCACCGAGGAGAACCG
CCGGCTGCAGCGGGAGCTGCAGGAGCTCCGCGCCATCAAGTTCGCCCCGCCGCCA---CCGCCCAACAACGCCAGCCAAC
ACCCCGGGACGCCGTCCTCCGCCGCGGCCCCTCCGGCGCCGTTTTACATGCAGCTGCCGGCCGCCACGCTGACCATCTGC
CCGTCCTGCGAGCGCCTCGGCGGAACCGCCGCCACCGCCGCCGGCAAGGTCGACCCCGACAGGCCCAAGGCCGCCACCCA
CCACTTCTTCAACCCCTTTACCCACTCCGCCGCCTGCTGATCTGCGCTCCACCGGACCGCG-------CGTACATACACG
ACGCTCATCAACATCGATCAGCACCACCGCCA--------TAGCTAGCTACGAGTAAGTAGCAGTGGCCGCCATAGCTAA
-----TACCTCACGTCGCAAGTAACATATGATCCTTG----CAGCCAGCTGCAGGACATGGACATGGACATGATCCTCCT
--ACTTTTGCCATTTCTTGGTCTGGGGGTTTAGTCCCGAATCTTGTTCAGTTTAGCTAATCCATCCATC----AATCATA
GGCGCAATCCATAGACGATAGGTAGTCAAACATCCAGCCGTAGTAGCTTT---GTAGCTAGTACTCGAAGCGGCCGGCCA
TTGTATATTCTTGTGCGTGCA------TGTAACCGTGGACCTCTCCTTTTGGTTGGCTTCTCTGCCTTTTTGTGTTCAAA
AGCTGATTATCGGAGAGGAGA-TAATAGGTTAAGCCGCCGCTGTGATGAACTAATTCCTAGTCGTGTCAGGCAGTGTTTG
GATGATGACATGAGAGAGGGCTAGAGAGAGGCTCTTGCTGTCGGGTGCGTACGTGTGTAATGTGTATACCTTTCTGACTT
TTTTTATATGCATATACGTTTCAATGATTGTGCTTGTCGGGCCTTAAACTTTACTTTGCGTCCCGGTTGCTTTCGCCTTT
GCTGGTTCATTTAATTGTTAATGGGAAAGCTTAGCCTCTCTTCTGCTCTTGCTTAACCATCTGTTCAGTTATGTTAA---
--------------------------------------------------------------------------------
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------------------------------------------------------------TTACACCGTTGTAAGTTGTA
ACCCCAACCTGGTTAACCAGGCCAATTTTCACACGACCACTCTGATTTGACTAGAAAGAAGCTCGTGGTATTGCCTGGTA
ATTAATGACGTACGGTTTCTGCCTCATCATCCATCAGATGTCGTTTTCAGTTAGATTGTTGAGTAATTACTAGGTAACCA
GAAAA---------------------------------------------------------------------------
-------------
>chr4A_62
-------------------------------------------------------------CCACAATCATTTGTGCAAA
TACCTAACAATTATCGGGCCATGCATGCATGCATGCAT----GCATGATTATCATGTGAAATACTT---GTACCAGAACC
AAAGTAGGATGTGGATGTC-CCGTACCTGAACGGACGGACGAGCTCTTAT--TATCTATACACGTA--------------
--------------------------------------------------------------------------------
-------------------------------CGTGCGTACCTAACTGATCTAGAACGCGCCCACCCTCGGTG-----AAC
GAACAGTGGCAAGCAAAAAAG--AAAAGAAACGGAGGATCTAATATTGCCGAGGTCTCGCCTTTTGTAATGCCTACATGC
ATGCGTGTGGGCAGACGGGGGCCGGGCGGGCGAGGCTGATGTGTGCGTGCGGCTTCTAATATTGCCGGCCCCTTTCCACA
CGCGCGTCCACGCGGCACCCCTAATCATCCATCCATACCAGCAGCAC------------AAAGAAAAACCCGACTTTTGA
GCAGCAGCGATGGCTGGGTGTTGAGAACGAGATGAAAAATATGCAGATCTGCAGGAGGGAACACGCCCAGA----GAGAG
GGAGGGAGACAGAGGGCGCAGCACGGCACTCTGGTCTGTGGATGGAGGCTGGACCCTCCCGGCGCGAGGGGTCGATCTCC
CTCGCTGCTGCCTGT--GCTGGGCTTGTCAAACATTCGCAAGTGTCGAGTGCGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCCCCTCTTCCTCCTCAAATATTCTCAACCCCTCGGCCTCAACCAATTCATTCCCCTCACTC
ATTCCTTCCTTCCTCCCCTCCCCTC----------TCCTCACCTCTCCTACACAGACGCGCGAATACACTTCCGCGACAC
CTTGCAAGAATTGCGAGAGGATTCAAGTCGGCGT---------------AGATAGACAAGATATAGTTTGCTGGTTCTTG
GGTCAAGCTAGCTAGAGACCATTGGCTCTGCCGATTTGTGCGGCACGCCATGTCGCAGGAGGAGGTCCACGACGCCGGCC
TGGCGCTGGGCCTGTCCCTGGGCGGCGGCGGCGGGGGCGGAGGCGACGGGTCGTCGTCGGCGCACCGCGGCAG---CAAC
AGCGGCCGGCTGACCCTGTGGGAGGC------------GGAGCCGTCGCTGACCCTCAGCATGCCGGACGACACCACCAT
GACCGGCACCGCGTCCGGCGGCGTGTCGTCCATGTCGGTGGGGGGCGCGGTGAAGAGGGAGCGCGCGGAGGAGGCGGAGC
TGGGCGAGATGGTGTCGTCCACGGCCGTGGGTGCCGAGGAGGACGACGACGGCAGCACGCGGAAGAAGCTGAGGCTCACC
AAGGAGCAGTCCGCGCTCCTGGAGGACCGCTTCAAGGAGCACAGCACCCTCAACCCGGTACGTACGTACG------TACG
CACGTACGCATGCGTACTAGTCACGTTCGAATCGATTCACCGCTGCTGATAGATAGCCGCAGATACCTAACATGCCTCAT
CTATCATCTGCTGAGATCTTC-TCTCTATTTATGCATGCGCGTACACAACATGCGTACAAGCAAATCCACAAATAAATCT
GG--TTTATTTTCTTGATCCATAGTAGC----------------------------------------------------
--TATGAGCTACTGAATCAAGAAAAAAAATGAGTTACTGAACAGTTCTTTTTTCCTTTGCGTGTCCTATTTGGATTTGAG
CAGAAGCAGAAAGTGGCTTTAGCCAAGCAGCTAAACCTCAGGCCAAGGCAGGTGGAAGTCTGGTTCCAGAACAGAAGAGC
CAGGTTAGTAACCTTGTACTCTACGTATTATTATACGCATATAAGTATGCACTCCAGGTTATATTACGGTCCCCTGCTAG
AGCTGACTTGCAACAATT----CTTGTATTATACACCTCTTCATCTTCTCAAAAAA--AAAAG----ACGGGCAATCATT
TTGTGTG-------TTGCACTCCCATCTCGATTCATTTTGTTTTACGTCCATGCATGCATGAAAAATCAGCGGAACC-TC
TGCCTAAAATTACGGGTCATTTCGGTCCTGGTGGTGAACTTTCTTTGATAAGTAACGTTGGATCCCGTGTTACACGTGCA
TGCAGGACGAAGCTGAAGCAGACGGAGGTGGACTGCGAGTTCCTGAAGCGCTGCTGCGAGACGCTCACCGAGGAGAACCG
CCGGCTGCAGCGGGAGCTGCAGGAGCTCCGCGCCATCAAGTTCGCCCCGCCGCCGCCGCCGCCCAACAACGCCAGCCAAC
ACCCCGGGACGCCGTCCTCCGCCGCGGCCCCGCCGGCGCCGTTCTACATGCAGCTGCCGGCCGCGACGCTGACCATCTGC
CCGTCCTGCGAGCGCCTGGGAGGAACCGCCGCCGCCGCCACCGGCAAGGTCGACCCCGACAGGCCCAAGGCCGCCACCCA
CCACTTCTTCAACCCCTTCACCCACTCCGCCGCCTGCTGATCGATCCGCGCTCCGCCGACCGCACGTACGTACATACACG
ACGCTCATCAACATCGACCAGCACCACCGCCA----TAGCTAGCTAGCTACAAGTAAGTAGCAGTGGCCGCCATAGCTAA
GCTAATACCTGACGTCGCAAGTAACATATGATCCTTG----CAGCCAGCTGCAGGACATGGACATGGACACGATCCTCCT
ACACTTTTGCCATTTCTTGGTCTGGGGGTTTCGTCCCGAATCTTGTTCAGTTTAGCTAATCCATCCATC----AAT----
---------CATAGACGATAGGTAGTCGAACA----GCCGTAGTAGCT-------AGCTAGTACTGGAAGCGGCCGGCCA
TTGTATATTCTTGTGCATGCATGTAAGTGTAACCGTGGACCTCTCCTTTTGGTTGGCTTCTCTGCCTTTTTGCGTTCAAA
AGCTGATTATCGGAGAGGAGGTTAATAGACTAAGCCGCCGCTGTGATGAACTAATTCCTAGTCGTGTCAGGCAGTGTTTG
GATGATGACATGAGAGAGGCTCTCC------------CTGTCGGGTGCGTACGTGTGTAATGTGTATACCTTTCTGACTT
TTTTTATATGCATATACGTCTCAATGATTGTGCCTGTCGGGCCTTAAACTTTACTTTGCGTCCCTGTTGCTTTCGCCTTT
GCTGGTTCATTTAATTGATAATGGGAAAGCCTAGCCTCTCTTCTGCTCTTGCTTAACCATCTGTTCAGTTGTAACAGGGA
CGATAATCCTACACCTACGTAGCTTTACGAAACGTTCTACATAACCTTCCCAATAACTCTCTCGCCCCCCCTGATTTTCA
GGTGGGCGGGGGCCCCTTCCTCCCCCTTCTCCAATCACAATTGTCCATGTGGCAGGTTACGTAAAACACGTAAAATTCTT
TACGTGGATGTAGCATTACTCAATTACACCGTCGATAATCCTACACCTACGTAGCTTTACGAAACGTTCTANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNCCCCCCTGATTTTCAGGTGGGCGGGGGCCCCTTCCTCCCCCTTCTCCAATCACAAT
TGTCCATGTGGCAGGTTACGTAAAACACGTAAAATTCTTTACGTGGATGTAGCATTACTCTTACACCGTTGTAAGTTGTA
ACCTCTACCTGGTTAACCAGCCCAATTTTCACACGGACACTCCGATTTGACTAGAAAGAAGTTCGGGGTATTGCCTGGTA
ATTAGTGACGTACGGTTTCTGCTTTATCATCCATCAGAGGTCGTTTTCAGTTAGATCGTTGAGTAATTACTAGGTAACCA
GAAAA---------------------------------------------------------------------------
-------------
>SNPs
-----------------------------S-------S-S------S---------------------------------
--------------------------------------SSSS---------------------SS---------------
---------S-------------------------S--------------SS----------------------------
--------------------------------------------------------------------------------
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---SSS---------------------------------------------------------------S----------
--------------------------------------------------------------------------------
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--------------------S------------------------S-----S----------------------------
--------------------------------------------------------------------------------
---------------SS---------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------SSSSSSSSSS-----------S-----------------------------S---
----------S---------------------------------------------------------------------
------------------------------------------S-------------------------------------
--------------------------------------------------S-----------------S-----------
--------------------------------------------------------------------------------
---------------------------------------------------------------S--S-------------
-------------S--------------------------------------------------------------S---
--------------S-----------------------------------------------------------------
--------------------------------------------S---------S-------------------------
--S-------S-------------------------------------S-----S-S-S---------------------
--SS----------------------------------------------------------------------------
----------S--------------------S----------S----------------S--------------------
-----------------------------SS-------------------------------------------------
--------S-S-------------S------------------------S------------------------------
-----------------------------------------------SSSS-------------S---------------
------------------------------------------------------------------------SS------
-S-------------------------S--S-------------------------------------S-----------
--------------------------------------------------------------------------------
-------------------------------S------------------------------------------------
--------------------------------------------------------------------------------
-----------S-----------------------------------------------------------S--------
----------------------------------------------S---------------------------------
-------------------S------------SSSS--------------------------------S-----------
-------------------------------------SSSS---------------------------------------
---------------------------------------------------------------------SSSS-------
---------------------------------------SSSSSSSS-SSSSS---------------------------
--------------------------------------------------------------------------------
-------S------------------------------------------------------------------------
--------------------------------------------------------------------------------
---S-------------------------------------------------------S--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------S-----------------
--------------------------------------------------------------------------------
-----------S----------------S-----------------------------------------SS--------
-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS
>forward_30
----------GTGGGTGCATGATGAGTCGT--------------------------------------------------
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>reverse_2191
--------------------------------------------------------------------------------
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------------------------------TTAAACCTCAGGCCAAGGCA------------------------------
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>forward_2003
--------------------------------------------------------------------------------
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--------------------------------------------------------------GCATGCCTCCTCAAATCT
GGT-----------------------------------------------------------------------------
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>reverse_4332
--------------------------------------------------------------------------------
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-----------GCGGTTTCTGCTTCATCGTC-------------------------------------------------
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-------------
